AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1355700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1355700 MtrunA17_Chr5g0437971 93.716 366 4 1 1 347 1 366 0.0 678
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1355700 AT2G40430.2 52.016 248 93 6 1 229 1 241 1.39e-64 212
Msa1355700 AT2G40430.2 52.326 172 81 1 180 351 275 445 4.79e-42 152
Msa1355700 AT2G40430.1 52.016 248 93 6 1 229 1 241 1.56e-64 211
Msa1355700 AT2G40430.1 53.704 162 74 1 180 341 275 435 5.10e-41 149
Msa1355700 AT2G40430.3 53.704 162 74 1 180 341 126 286 2.81e-42 149
Msa1355700 AT2G40430.3 73.563 87 23 0 1 87 1 87 3.86e-35 130

Find 66 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGTGTATTGTTAGAAAA+TGG 0.170567 tig0015000:+57206 Msa1355700:exon
TCAACAAAAGATGCTCTTTC+TGG 0.195441 tig0015000:+57315 Msa1355700:CDS
TGGAGATGGGTTTAACTTAA+TGG 0.240731 tig0015000:-65533 None:intergenic
ACAGTTAAAGGCACCGGTTC+AGG 0.249592 tig0015000:-59310 None:intergenic
TAAAGTCTACAGAAATGAAT+TGG 0.292665 tig0015000:+59285 Msa1355700:CDS
TTCATTGGCGACAAAACTTT+TGG 0.293554 tig0015000:-58593 None:intergenic
TCTCCAGCAGGAACAGTTAA+AGG 0.308159 tig0015000:-59322 None:intergenic
TTATTAAGCGAAGAGATAAA+TGG 0.314835 tig0015000:+60504 Msa1355700:CDS
AACCTGTTTCTCCTCGGCTT+TGG 0.348665 tig0015000:-60724 None:intergenic
AAAGAAATCTTCAATTTCTT+CGG 0.356673 tig0015000:-57286 None:intergenic
ATTCTTCTTCTTCTTTGATT+CGG 0.360872 tig0015000:-60087 None:intergenic
ACAAGTCTACCTTAAGCTTT+CGG 0.364930 tig0015000:-60533 None:intergenic
AAAGTGTATTGTTAGAAAAT+GGG 0.381905 tig0015000:+57207 Msa1355700:exon
ATTTCTCAAAAGAAATTGAT+AGG 0.389918 tig0015000:+60108 Msa1355700:CDS
TCGCTTAATAAAACTTGAAC+AGG 0.391740 tig0015000:-60492 None:intergenic
TTCCAAAGCCGAGGAGAAAC+AGG 0.394318 tig0015000:+60722 Msa1355700:CDS
TGCTAAACAAGAGAGGTTAA+AGG 0.397687 tig0015000:+60294 Msa1355700:CDS
TTGAGTTGAATAAGAGAATT+CGG 0.399925 tig0015000:+60039 Msa1355700:CDS
TGGATCCATCCGAAAGCTTA+AGG 0.404582 tig0015000:+60524 Msa1355700:CDS
AAATGAATTGGGCCCTGAAC+CGG 0.418925 tig0015000:+59297 Msa1355700:CDS
AAGGCACTGGCTTAACAAAC+TGG 0.432795 tig0015000:-58528 None:intergenic
ACAATACACTTTCAGGTACA+AGG 0.455242 tig0015000:-57196 None:intergenic
CGCCAATGAAAATATTCATA+AGG 0.467315 tig0015000:+58606 Msa1355700:CDS
GGAGGATCAACCTCGACAGC+TGG 0.470903 tig0015000:-59093 None:intergenic
GGGTTGTTGCACCCTTCTAA+AGG 0.473919 tig0015000:+60663 Msa1355700:intron
AAAGTCTACAGAAATGAATT+GGG 0.481927 tig0015000:+59286 Msa1355700:CDS
TCAGAAATAGCTTCTCCAGC+AGG 0.486553 tig0015000:-59334 None:intergenic
AAGGCATGTCCTCCTCGCTT+AGG 0.491146 tig0015000:+60313 Msa1355700:CDS
TCCCACACATGAAAGTCATC+AGG 0.503208 tig0015000:+59131 Msa1355700:CDS
CAGTTAAAGGCACCGGTTCA+GGG 0.505603 tig0015000:-59309 None:intergenic
GGAAGAAATCGAAAAGTTCA+AGG 0.508630 tig0015000:+57229 Msa1355700:CDS
TATAAAAGCATAGAGAAGAG+AGG 0.512651 tig0015000:+60691 Msa1355700:CDS
GTGCCTTTAACTGTTCCTGC+TGG 0.514168 tig0015000:+59319 Msa1355700:CDS
AATAAAACTTGAACAGGAGC+AGG 0.514471 tig0015000:-60486 None:intergenic
TAAACCAACCTGTTTCTCCT+CGG 0.519016 tig0015000:-60730 None:intergenic
AAGCATAGAGAAGAGAGGGT+TGG 0.525558 tig0015000:+60696 Msa1355700:CDS
GGAAATTAAGCATGAAGATG+AGG 0.531668 tig0015000:+60240 Msa1355700:CDS
AATCGAAAAGTTCAAGGAAG+GGG 0.536801 tig0015000:+57235 Msa1355700:CDS
TGTTTCTTTAGAGTAGATGA+AGG 0.544003 tig0015000:-58547 None:intergenic
TACTTGTGCTTTCCTAAGCG+AGG 0.545713 tig0015000:-60325 None:intergenic
GTCTACCTTAAGCTTTCGGA+TGG 0.547767 tig0015000:-60529 None:intergenic
AAGTGTATTGTTAGAAAATG+GGG 0.549466 tig0015000:+57208 Msa1355700:exon
TTTAGAGTAGATGAAGGCAC+TGG 0.552068 tig0015000:-58541 None:intergenic
ACCTGATGACTTTCATGTGT+GGG 0.552896 tig0015000:-59132 None:intergenic
TACATTAGCTACTGCTGTTG+CGG 0.553793 tig0015000:+59252 Msa1355700:CDS
GCTGTCGAGGTTGATCCTCC+AGG 0.559631 tig0015000:+59096 Msa1355700:CDS
ACAAAAGATGCTCTTTCTGG+TGG 0.562367 tig0015000:+57318 Msa1355700:CDS
GAAATCGAAAAGTTCAAGGA+AGG 0.564439 tig0015000:+57233 Msa1355700:CDS
CAAGGAAGGGGAAGAAAGCA+TGG 0.569927 tig0015000:+57247 Msa1355700:CDS
AAATCGAAAAGTTCAAGGAA+GGG 0.576425 tig0015000:+57234 Msa1355700:CDS
TTTATACCGATCCTTTAGAA+GGG 0.578806 tig0015000:-60674 None:intergenic
TACTCATATTCCAGCTGTCG+AGG 0.579607 tig0015000:+59083 Msa1355700:CDS
ATAAAAGCATAGAGAAGAGA+GGG 0.580504 tig0015000:+60692 Msa1355700:CDS
CAATACACTTTCAGGTACAA+GGG 0.583055 tig0015000:-57195 None:intergenic
TTTGATGTGGCTAGATCTTG+CGG 0.583564 tig0015000:+58441 Msa1355700:intron
GTTGCACCCTTCTAAAGGAT+CGG 0.583877 tig0015000:+60668 Msa1355700:CDS
GCAGGAACAGTTAAAGGCAC+CGG 0.584872 tig0015000:-59316 None:intergenic
GAAAGTAATCACGAAGATGA+TGG 0.598830 tig0015000:+59544 Msa1355700:CDS
TCGACAGCTGGAATATGAGT+AGG 0.600011 tig0015000:-59081 None:intergenic
GGTTGGTTGTTCCAAAGCCG+AGG 0.611415 tig0015000:+60713 Msa1355700:CDS
GTGGGATTAAATGAGCATCC+TGG 0.637097 tig0015000:-59114 None:intergenic
TACCTGATGACTTTCATGTG+TGG 0.645793 tig0015000:-59133 None:intergenic
TTGTGCTTTCCTAAGCGAGG+AGG 0.655472 tig0015000:-60322 None:intergenic
GACAAGTTGCTAAACAAGAG+AGG 0.673783 tig0015000:+60287 Msa1355700:CDS
GGATTAAATGAGCATCCTGG+AGG 0.690842 tig0015000:-59111 None:intergenic
AAATACGTCAGAATCTAACA+CGG 0.731068 tig0015000:-58798 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CCAAAATAAATAAATAAAAA+TGG - tig0015000:57409-57428 None:intergenic 10.0%
!!! CCATTTTTATTTATTTATTT+TGG + tig0015000:57406-57425 Msa1355700:intron 10.0%
!!! TATTTTTAGATTATATGAAA+AGG + tig0015000:57434-57453 Msa1355700:intron 10.0%
!!! TATTTTATTTTTTCAAAACA+AGG + tig0015000:57944-57963 Msa1355700:intron 10.0%
!!! AATTTATTTTAAATTTGATG+TGG + tig0015000:58428-58447 Msa1355700:intron 10.0%
!!! AATAAAACAAATTTTAAAAG+AGG - tig0015000:58743-58762 None:intergenic 10.0%
!! TTAATTTATAATAACCAAAA+TGG - tig0015000:58868-58887 None:intergenic 10.0%
!!! TTTTGGTTATTATAAATTAA+TGG + tig0015000:58868-58887 Msa1355700:intron 10.0%
!! TTTGGTTATTATAAATTAAT+GGG + tig0015000:58869-58888 Msa1355700:intron 10.0%
!! ATTTATTATAGAAAAAGATT+TGG + tig0015000:61608-61627 Msa1355700:intron 10.0%
!! TAAATATAGAAATAATATGT+TGG + tig0015000:61796-61815 Msa1355700:intron 10.0%
!! AGAAAGAAAAAAAAAAAAAA+CGG - tig0015000:61904-61923 None:intergenic 10.0%
!! AACCTATTAATATTATAAAA+AGG - tig0015000:61939-61958 None:intergenic 10.0%
!! TATTGAATAATTGATATATT+TGG + tig0015000:61959-61978 Msa1355700:intron 10.0%
!!! AAGCTAATTTTTTTAAAAAT+AGG + tig0015000:62026-62045 Msa1355700:intron 10.0%
!! AAATATAAATATATAAGCAT+TGG + tig0015000:62287-62306 Msa1355700:intron 10.0%
!!! TTTTTTCCATATTTTTAATT+TGG + tig0015000:63325-63344 Msa1355700:intron 10.0%
!!! TCAATGTATTATATTATTTT+TGG + tig0015000:64544-64563 Msa1355700:intron 10.0%
!!! CAATGTATTATATTATTTTT+GGG + tig0015000:64545-64564 Msa1355700:intron 10.0%
!!! ATTTTTTTTTGTAAAAAAAG+TGG + tig0015000:64621-64640 Msa1355700:intron 10.0%
!!! TTATTTTTTAATCAAAATGT+GGG + tig0015000:64678-64697 Msa1355700:intron 10.0%
!!! GTTAAAATTCATTTTCTTTT+AGG + tig0015000:57984-58003 Msa1355700:intron 15.0%
!! TTAAAATAAATTCAAATCCA+AGG - tig0015000:58420-58439 None:intergenic 15.0%
!! TTTCTTTAATAATCTATATC+AGG + tig0015000:58769-58788 Msa1355700:intron 15.0%
!!! TTTTAGGTGTATAAATTTTA+TGG + tig0015000:59777-59796 Msa1355700:intron 15.0%
!! TTACTTACAAATATATTAAG+TGG - tig0015000:59905-59924 None:intergenic 15.0%
!!! ATTAGTCTAAAAAAAAAGTA+AGG - tig0015000:60614-60633 None:intergenic 15.0%
!!! TATTTTGCTTACAATTTTAT+TGG + tig0015000:61490-61509 Msa1355700:intron 15.0%
!!! GTCCTTTTTATAATATTAAT+AGG + tig0015000:61934-61953 Msa1355700:intron 15.0%
!!! TCTTTTATATTATGCATAAA+TGG + tig0015000:62933-62952 Msa1355700:intron 15.0%
!!! ATTTTTGAAATAAAAAAGCA+AGG - tig0015000:63241-63260 None:intergenic 15.0%
!!! AACCTTTTATTTTCATTTAT+AGG + tig0015000:63923-63942 Msa1355700:intron 15.0%
!! ATCCTATAAATGAAAATAAA+AGG - tig0015000:63928-63947 None:intergenic 15.0%
!!! AGAAATTAGAAGTATATTAT+AGG - tig0015000:64106-64125 None:intergenic 15.0%
!!! ACAATTTTAAATCACAATTA+TGG + tig0015000:64236-64255 Msa1355700:intron 15.0%
!! AAACTATAAGCATAATATAA+AGG - tig0015000:64274-64293 None:intergenic 15.0%
!!! TTTTTTTGAAGGAATTTTTA+TGG - tig0015000:64571-64590 None:intergenic 15.0%
!! TAAAAAATAACTGGTAATTA+TGG - tig0015000:64668-64687 None:intergenic 15.0%
!!! CATTTTGATTAAAAAATAAC+TGG - tig0015000:64677-64696 None:intergenic 15.0%
!!! GTTATTTTTTAATCAAAATG+TGG + tig0015000:64677-64696 Msa1355700:intron 15.0%
!! AATTTAATTATTTGATGTGT+CGG - tig0015000:64937-64956 None:intergenic 15.0%
!! AAGAAAAAACATAATTTCAT+TGG - tig0015000:65152-65171 None:intergenic 15.0%
!! AAAGTGTATTGTTAGAAAAT+GGG + tig0015000:57207-57226 Msa1355700:exon 20.0%
!! AAAGAAATCTTCAATTTCTT+CGG - tig0015000:57289-57308 None:intergenic 20.0%
!!! TCATAAGTTGTTTTAGTTTT+AGG + tig0015000:57764-57783 Msa1355700:intron 20.0%
!!! CATAAGTTGTTTTAGTTTTA+GGG + tig0015000:57765-57784 Msa1355700:intron 20.0%
!!! TTTATTTTTTCAAAACAAGG+AGG + tig0015000:57947-57966 Msa1355700:intron 20.0%
!!! GTAACACAATCTTTTTTTTT+AGG + tig0015000:58031-58050 Msa1355700:intron 20.0%
!! GAAAACACATCAATTATAAT+AGG - tig0015000:58236-58255 None:intergenic 20.0%
!! CTAAATAATAATATGCTTAG+TGG + tig0015000:58656-58675 Msa1355700:intron 20.0%
!! TTTAATAATCTATATCAGGA+GGG + tig0015000:58773-58792 Msa1355700:intron 20.0%
!! AAATATGGAAACAAATTCAT+AGG - tig0015000:59410-59429 None:intergenic 20.0%
!!! TTAAATACTTTCTTTTTTGC+CGG + tig0015000:59632-59651 Msa1355700:intron 20.0%
!! ATTTCTCAAAAGAAATTGAT+AGG + tig0015000:60108-60127 Msa1355700:CDS 20.0%
!!! ACTAATTTTCCTACTTATTT+TGG + tig0015000:60628-60647 Msa1355700:intron 20.0%
!!! TTATTTTGGTGTACATAATT+AGG + tig0015000:60642-60661 Msa1355700:intron 20.0%
!!! TATTTTGGTGTACATAATTA+GGG + tig0015000:60643-60662 Msa1355700:intron 20.0%
!! ATTATTATCTCAAACAGATT+TGG + tig0015000:60797-60816 Msa1355700:intron 20.0%
!!! ATCAAATTTTCATATCCTTT+TGG + tig0015000:61083-61102 Msa1355700:intron 20.0%
!! TTAATCGAATGTATTTGTTT+AGG + tig0015000:61729-61748 Msa1355700:intron 20.0%
!!! ACTTAATCATTTTCCTAAAA+GGG - tig0015000:61760-61779 None:intergenic 20.0%
!! TTTCTATATTTACTTACTCA+AGG - tig0015000:61788-61807 None:intergenic 20.0%
!!! ATTTTTTTAAAAATAGGACG+AGG + tig0015000:62032-62051 Msa1355700:intron 20.0%
!!! TTTTTTTAAAAATAGGACGA+GGG + tig0015000:62033-62052 Msa1355700:intron 20.0%
!! AATAAGATTTATGATGTGTT+AGG + tig0015000:62093-62112 Msa1355700:intron 20.0%
!!! ATATCATTTTTGTAGGTAAA+AGG - tig0015000:62366-62385 None:intergenic 20.0%
!!! CTACATTATATCATTTTTGT+AGG - tig0015000:62373-62392 None:intergenic 20.0%
!! TCATTATATGAGTTATCATA+TGG - tig0015000:62796-62815 None:intergenic 20.0%
!! CATAGACCAAATTAAAAATA+TGG - tig0015000:63334-63353 None:intergenic 20.0%
!!! AAAAGTTTTATTCCTCATAA+AGG - tig0015000:64331-64350 None:intergenic 20.0%
!! TTCATTGTTGTGTAATAAAA+CGG + tig0015000:64443-64462 Msa1355700:intron 20.0%
!!! GATCATTAGATTTTTTTTGA+AGG - tig0015000:64582-64601 None:intergenic 20.0%
!! AAGTAAAGAGTTATTTATCA+AGG - tig0015000:65202-65221 None:intergenic 20.0%
!!! GATAAATTATCGATCATTTT+AGG - tig0015000:65225-65244 None:intergenic 20.0%
!!! AATTTATTAAGCAAAAGTAC+CGG + tig0015000:65245-65264 Msa1355700:intron 20.0%
!!! ATACATAGCATTATTTTTCT+TGG + tig0015000:65410-65429 Msa1355700:intron 20.0%
!! AATTAATTGAAAAAATCGTG+TGG - tig0015000:65489-65508 None:intergenic 20.0%
!! TTTTCTAACAATACACTTTC+AGG - tig0015000:57206-57225 None:intergenic 25.0%
!! GAAAGTGTATTGTTAGAAAA+TGG + tig0015000:57206-57225 Msa1355700:exon 25.0%
! AAGTGTATTGTTAGAAAATG+GGG + tig0015000:57208-57227 Msa1355700:exon 25.0%
!!! CATTTTTGAAGTGTTTGTTT+TGG + tig0015000:57852-57871 Msa1355700:intron 25.0%
! CTCTATAAAGAAAAGCTATT+AGG + tig0015000:57902-57921 Msa1355700:intron 25.0%
! AGCTTATGAAAACAACTTAT+AGG + tig0015000:58101-58120 Msa1355700:intron 25.0%
! ATTAAGCTGTTTATTCAAAC+AGG + tig0015000:58177-58196 Msa1355700:intron 25.0%
! TTAAGCTGTTTATTCAAACA+GGG + tig0015000:58178-58197 Msa1355700:intron 25.0%
! GTACAAGTTTATGTAATTCA+TGG - tig0015000:58258-58277 None:intergenic 25.0%
! ATCAATGAAAAAGTGAATTC+TGG - tig0015000:58397-58416 None:intergenic 25.0%
!! GACCTTATGAATATTTTCAT+TGG - tig0015000:58611-58630 None:intergenic 25.0%
! CTTTAATAATCTATATCAGG+AGG + tig0015000:58772-58791 Msa1355700:intron 25.0%
!!! AAAGCATTTAGTATCCATTT+TGG + tig0015000:58851-58870 Msa1355700:intron 25.0%
! ATTAATGGGATGTTAACATT+AGG + tig0015000:58883-58902 Msa1355700:intron 25.0%
! AAGAACTTTATTGTTTAACC+AGG + tig0015000:59228-59247 Msa1355700:intron 25.0%
! TAAAGTCTACAGAAATGAAT+TGG + tig0015000:59285-59304 Msa1355700:CDS 25.0%
! AAAGTCTACAGAAATGAATT+GGG + tig0015000:59286-59305 Msa1355700:CDS 25.0%
!!! TGTTATTTTTATGACCTGAT+TGG - tig0015000:59667-59686 None:intergenic 25.0%
! CAAATTATACATGAAAGCTT+GGG - tig0015000:59706-59725 None:intergenic 25.0%
! TCAAATTATACATGAAAGCT+TGG - tig0015000:59707-59726 None:intergenic 25.0%
! GCTTTCAAAAAAAAGAATAC+CGG - tig0015000:59814-59833 None:intergenic 25.0%
!! CTTAATTTCATTTTGAACAC+TGG + tig0015000:59870-59889 Msa1355700:intron 25.0%
! TCAGATATTTAGACATAACT+GGG - tig0015000:59957-59976 None:intergenic 25.0%
! ATCAGATATTTAGACATAAC+TGG - tig0015000:59958-59977 None:intergenic 25.0%
! TGTATTGTTTGAATCACTAT+TGG + tig0015000:59983-60002 Msa1355700:intron 25.0%
!!! GTCACTTTCTTTGTTTTAAT+GGG - tig0015000:60014-60033 None:intergenic 25.0%
!!! AGTCACTTTCTTTGTTTTAA+TGG - tig0015000:60015-60034 None:intergenic 25.0%
!!! TTGAGTTGAATAAGAGAATT+CGG + tig0015000:60039-60058 Msa1355700:CDS 25.0%
! ATTCTTCTTCTTCTTTGATT+CGG - tig0015000:60090-60109 None:intergenic 25.0%
! CATTAATACAAGTACGATAA+GGG - tig0015000:60368-60387 None:intergenic 25.0%
! CTTATCGTACTTGTATTAAT+GGG + tig0015000:60367-60386 Msa1355700:intron 25.0%
! TAACGTAATTGTTGTAGAAA+TGG - tig0015000:60435-60454 None:intergenic 25.0%
! TTATTAAGCGAAGAGATAAA+TGG + tig0015000:60504-60523 Msa1355700:CDS 25.0%
! TTATGTACACCAAAATAAGT+AGG - tig0015000:60640-60659 None:intergenic 25.0%
!! GGATTTTGTAGAAGTTAATT+TGG + tig0015000:60942-60961 Msa1355700:intron 25.0%
!! TGAGTTTAAAGTGAAATAGT+TGG + tig0015000:60972-60991 Msa1355700:intron 25.0%
!! TGAAATAGTTGGTGTTTAAA+GGG + tig0015000:60983-61002 Msa1355700:intron 25.0%
!!! TTGAAAGTTTTGACTTGAAA+TGG - tig0015000:61058-61077 None:intergenic 25.0%
!! ATTTCAAGTCAAAACTTTCA+AGG + tig0015000:61057-61076 Msa1355700:intron 25.0%
!! AGTCTTTGATTTAGAATTTG+AGG + tig0015000:61165-61184 Msa1355700:intron 25.0%
! ATTGAAATATACAACATGGA+AGG - tig0015000:61227-61246 None:intergenic 25.0%
! TTCCATGTTGTATATTTCAA+TGG + tig0015000:61226-61245 Msa1355700:intron 25.0%
! ATCCATTGAAATATACAACA+TGG - tig0015000:61231-61250 None:intergenic 25.0%
! ATTATGATTATGCATTATGC+AGG + tig0015000:61281-61300 Msa1355700:intron 25.0%
!! CTTAATCATTTTCCTAAAAG+GGG - tig0015000:61759-61778 None:intergenic 25.0%
!! CACTTAATCATTTTCCTAAA+AGG - tig0015000:61761-61780 None:intergenic 25.0%
! AGAAATAATATGTTGGAAAG+TGG + tig0015000:61803-61822 Msa1355700:intron 25.0%
! AATCATAATATCTGAATTGC+TGG - tig0015000:62194-62213 None:intergenic 25.0%
! TATGTTGTCAATTATGCAAT+GGG - tig0015000:62332-62351 None:intergenic 25.0%
! TTATGTTGTCAATTATGCAA+TGG - tig0015000:62333-62352 None:intergenic 25.0%
!! ATTTCGATTTGATATTCGTA+CGG - tig0015000:62548-62567 None:intergenic 25.0%
!! AATTTTGCAATATTAATGCG+AGG - tig0015000:62595-62614 None:intergenic 25.0%
!!! GCATAAATGGTTTTAATTAG+AGG + tig0015000:62946-62965 Msa1355700:intron 25.0%
!!! TTGTGATTTTTTTGCGATTT+CGG - tig0015000:63025-63044 None:intergenic 25.0%
!! CATTTTCTTATTCAATCACA+TGG + tig0015000:63066-63085 Msa1355700:intron 25.0%
!!! TTCTTATGTTGCTTTAGATT+TGG - tig0015000:63129-63148 None:intergenic 25.0%
! AACATTATTGAATGTGACAT+TGG + tig0015000:63362-63381 Msa1355700:intron 25.0%
! TAGAATTTGCCTTAAAACTA+AGG - tig0015000:63581-63600 None:intergenic 25.0%
!!! TAGTTTTAAGGCAAATTCTA+TGG + tig0015000:63581-63600 Msa1355700:intron 25.0%
!!! TTTACGCATTTTTTTGTAGT+GGG - tig0015000:63611-63630 None:intergenic 25.0%
!!! ATTTACGCATTTTTTTGTAG+TGG - tig0015000:63612-63631 None:intergenic 25.0%
! ACAAAAAAATGCGTAAATTC+CGG + tig0015000:63614-63633 Msa1355700:intron 25.0%
! CCACTATATACTATGTATTA+CGG + tig0015000:63705-63724 Msa1355700:intron 25.0%
! AAAGGTTCATAATGTGTAAA+TGG - tig0015000:63910-63929 None:intergenic 25.0%
! AGACAATTACTAAAATGTTC+TGG + tig0015000:64034-64053 Msa1355700:intron 25.0%
!! GAATAAAACTTTTTGCAAGA+GGG + tig0015000:64338-64357 Msa1355700:intron 25.0%
! TGTAAAAAAAGTGGTAATTG+TGG + tig0015000:64630-64649 Msa1355700:intron 25.0%
!!! TATATTTTTGTCATTAGTGG+CGG - tig0015000:64721-64740 None:intergenic 25.0%
! AGTTTAAACATTGTGTATTG+CGG + tig0015000:64747-64766 Msa1355700:intron 25.0%
AAATCGAAAAGTTCAAGGAA+GGG + tig0015000:57234-57253 Msa1355700:CDS 30.0%
!! TTTTTCGAAGACAAATCCAA+AGG + tig0015000:57372-57391 Msa1355700:CDS 30.0%
TCTAATAAGCCAATCCAAAT+AGG - tig0015000:57673-57692 None:intergenic 30.0%
CACTTCAAAAATGACAAAAG+TGG - tig0015000:57845-57864 None:intergenic 30.0%
ACTAATGGGAATAAGATCAA+GGG - tig0015000:58071-58090 None:intergenic 30.0%
AACTAATGGGAATAAGATCA+AGG - tig0015000:58072-58091 None:intergenic 30.0%
AGCTATCTTAGAGAACTAAT+GGG - tig0015000:58085-58104 None:intergenic 30.0%
AAGCTATCTTAGAGAACTAA+TGG - tig0015000:58086-58105 None:intergenic 30.0%
ACATAAACTTGTACGAGAAA+TGG + tig0015000:58264-58283 Msa1355700:intron 30.0%
!!! TTCACTTTTTCATTGATCCT+TGG + tig0015000:58400-58419 Msa1355700:intron 30.0%
!! TGTTTCTTTAGAGTAGATGA+AGG - tig0015000:58550-58569 None:intergenic 30.0%
CGCCAATGAAAATATTCATA+AGG + tig0015000:58606-58625 Msa1355700:CDS 30.0%
GTTTGCGATGAAAAGAAAAA+AGG - tig0015000:58721-58740 None:intergenic 30.0%
AAATACGTCAGAATCTAACA+CGG - tig0015000:58801-58820 None:intergenic 30.0%
ATTCTGACGTATTTGATATG+TGG + tig0015000:58807-58826 Msa1355700:intron 30.0%
TTCTGACGTATTTGATATGT+GGG + tig0015000:58808-58827 Msa1355700:intron 30.0%
AAGGCAACAAAAAGTGAAAA+AGG + tig0015000:58937-58956 Msa1355700:intron 30.0%
TAAAATGGAAGAAGAAACAC+TGG - tig0015000:58990-59009 None:intergenic 30.0%
AATGTGCAGCAACAATAAAA+TGG - tig0015000:59005-59024 None:intergenic 30.0%
!!! ATTCAGTAACCTTGCTTTTT+TGG + tig0015000:59481-59500 Msa1355700:intron 30.0%
! AAGGCTAAGTTAAGCTTTTT+AGG + tig0015000:59761-59780 Msa1355700:intron 30.0%
!!! TTATTTTAGTAGAGAGAGAG+AGG - tig0015000:60163-60182 None:intergenic 30.0%
!! AGATGATTTTTAAGCATCTC+TGG + tig0015000:60184-60203 Msa1355700:intron 30.0%
CCATTAATACAAGTACGATA+AGG - tig0015000:60369-60388 None:intergenic 30.0%
CCTTATCGTACTTGTATTAA+TGG + tig0015000:60366-60385 Msa1355700:intron 30.0%
ACCAATTCCATTATTGTAAC+AGG + tig0015000:60457-60476 Msa1355700:intron 30.0%
! ACCTGTTACAATAATGGAAT+TGG - tig0015000:60461-60480 None:intergenic 30.0%
TCGCTTAATAAAACTTGAAC+AGG - tig0015000:60495-60514 None:intergenic 30.0%
! TTTATACCGATCCTTTAGAA+GGG - tig0015000:60677-60696 None:intergenic 30.0%
! TTTTATACCGATCCTTTAGA+AGG - tig0015000:60678-60697 None:intergenic 30.0%
! TATAAAAGCATAGAGAAGAG+AGG + tig0015000:60691-60710 Msa1355700:CDS 30.0%
! ATAAAAGCATAGAGAAGAGA+GGG + tig0015000:60692-60711 Msa1355700:CDS 30.0%
TATTTATGCCTGCAATAAGT+TGG + tig0015000:60865-60884 Msa1355700:intron 30.0%
! GTGAAATAGTTGGTGTTTAA+AGG + tig0015000:60982-61001 Msa1355700:intron 30.0%
! TGCAAAAAGTTATGGTGTTT+TGG - tig0015000:61112-61131 None:intergenic 30.0%
TTTCTGTCTGCAAAAAGTTA+TGG - tig0015000:61120-61139 None:intergenic 30.0%
GACTCATGAAGTGAAAAAAT+AGG - tig0015000:61149-61168 None:intergenic 30.0%
TTAAGTTAGGGAAGAAAACA+AGG - tig0015000:61319-61338 None:intergenic 30.0%
GAAATGATTAACAAAGATCC+TGG + tig0015000:61532-61551 Msa1355700:intron 30.0%
!!! AGGGAGTAGTAGTTTTATAT+TGG - tig0015000:61864-61883 None:intergenic 30.0%
ATATAAAACTACTACTCCCT+CGG + tig0015000:61864-61883 Msa1355700:intron 30.0%
ACAATTTATTTGTCTGTCAC+TGG - tig0015000:62260-62279 None:intergenic 30.0%
ATGTTGTCAATTATGCAATG+GGG - tig0015000:62331-62350 None:intergenic 30.0%
TTGCATGATCCTATTATTGA+AGG + tig0015000:62495-62514 Msa1355700:intron 30.0%
TGCATGATCCTATTATTGAA+GGG + tig0015000:62496-62515 Msa1355700:intron 30.0%
! TTTCGATTTGATATTCGTAC+GGG - tig0015000:62547-62566 None:intergenic 30.0%
CATGCTACAAACAAAAAAGT+AGG + tig0015000:62632-62651 Msa1355700:intron 30.0%
ATGTTAGGAGTCAAACTAAT+TGG - tig0015000:62714-62733 None:intergenic 30.0%
AAATGAAGGGGAAAAATTGA+AGG + tig0015000:62760-62779 Msa1355700:intron 30.0%
! GTTTGAACTGATTCAGTTTA+CGG - tig0015000:63003-63022 None:intergenic 30.0%
TTCAATCACATGGTTTGATT+TGG + tig0015000:63076-63095 Msa1355700:intron 30.0%
!! ATGTTGCTTTAGATTTGGTT+CGG - tig0015000:63124-63143 None:intergenic 30.0%
CCAAATCAATTAAACCAATG+TGG - tig0015000:63504-63523 None:intergenic 30.0%
!! CCACATTGGTTTAATTGATT+TGG + tig0015000:63501-63520 Msa1355700:intron 30.0%
CCGTAATACATAGTATATAG+TGG - tig0015000:63708-63727 None:intergenic 30.0%
AACATCATCAAAATCATGTG+AGG - tig0015000:63782-63801 None:intergenic 30.0%
!!! TCACATGATTTTGATGATGT+TGG + tig0015000:63781-63800 Msa1355700:intron 30.0%
!!! CTTTTTTCACGATGCTAAAA+AGG - tig0015000:64201-64220 None:intergenic 30.0%
! GGAATAAAACTTTTTGCAAG+AGG + tig0015000:64337-64356 Msa1355700:intron 30.0%
AAAAAAAGTGGTAATTGTGG+CGG + tig0015000:64633-64652 Msa1355700:intron 30.0%
TAATCAAAATGTGGGAATTC+TGG + tig0015000:64686-64705 Msa1355700:intron 30.0%
AATCAAAATGTGGGAATTCT+GGG + tig0015000:64687-64706 Msa1355700:intron 30.0%
!! GGCTATATTTTTGTCATTAG+TGG - tig0015000:64724-64743 None:intergenic 30.0%
ATACACAATGTTTAAACTGG+CGG - tig0015000:64745-64764 None:intergenic 30.0%
GCAATACACAATGTTTAAAC+TGG - tig0015000:64748-64767 None:intergenic 30.0%
ACAAAAAAACGCGTAAATTC+CGG - tig0015000:64891-64910 None:intergenic 30.0%
TACGATACACCTCATAAATT+GGG - tig0015000:65276-65295 None:intergenic 30.0%
GCATTGGGTGATTAAAATTA+GGG - tig0015000:65305-65324 None:intergenic 30.0%
! AGCATTGGGTGATTAAAATT+AGG - tig0015000:65306-65325 None:intergenic 30.0%
!! ATGTTTAATGAGGAAGCATT+GGG - tig0015000:65320-65339 None:intergenic 30.0%
! TATGTTTAATGAGGAAGCAT+TGG - tig0015000:65321-65340 None:intergenic 30.0%
ATGCTTCCTCATTAAACATA+CGG + tig0015000:65321-65340 Msa1355700:intron 30.0%
! CAATAGATTTTTGCAAGACA+TGG + tig0015000:65443-65462 Msa1355700:intron 30.0%
AAATCGTGTGGTTGAAAATA+AGG - tig0015000:65477-65496 None:intergenic 30.0%
! CAATACACTTTCAGGTACAA+GGG - tig0015000:57198-57217 None:intergenic 35.0%
! ACAATACACTTTCAGGTACA+AGG - tig0015000:57199-57218 None:intergenic 35.0%
GGAAGAAATCGAAAAGTTCA+AGG + tig0015000:57229-57248 Msa1355700:CDS 35.0%
GAAATCGAAAAGTTCAAGGA+AGG + tig0015000:57233-57252 Msa1355700:CDS 35.0%
AATCGAAAAGTTCAAGGAAG+GGG + tig0015000:57235-57254 Msa1355700:CDS 35.0%
TCAACAAAAGATGCTCTTTC+TGG + tig0015000:57315-57334 Msa1355700:CDS 35.0%
TTCGAAAAAGAGAGAATCAC+TGG - tig0015000:57361-57380 None:intergenic 35.0%
AATGGGTACATACATACCTT+TGG - tig0015000:57391-57410 None:intergenic 35.0%
ACTTACACATAGAGCCTATT+TGG + tig0015000:57656-57675 Msa1355700:intron 35.0%
TAAGTACCTGTGAGATTGAT+TGG + tig0015000:57708-57727 Msa1355700:intron 35.0%
AAGTACCTGTGAGATTGATT+GGG + tig0015000:57709-57728 Msa1355700:intron 35.0%
ATCCAAACTGTCTCATTATG+TGG + tig0015000:58203-58222 Msa1355700:intron 35.0%
TACCACATAATGAGACAGTT+TGG - tig0015000:58208-58227 None:intergenic 35.0%
!! TTATCTGCGTTTCTAGTATG+TGG + tig0015000:58326-58345 Msa1355700:intron 35.0%
!! CTAGTATGTGGTTGATTTGT+TGG + tig0015000:58338-58357 Msa1355700:intron 35.0%
!! TTGGTTGTAGAGTACTGTAT+TGG + tig0015000:58357-58376 Msa1355700:intron 35.0%
TAAAGAAACACGCGAAAAAC+CGG + tig0015000:58560-58579 Msa1355700:CDS 35.0%
! TTCATTGGCGACAAAACTTT+TGG - tig0015000:58596-58615 None:intergenic 35.0%
! TGGCAAACATACTTGGATTT+TGG + tig0015000:58676-58695 Msa1355700:intron 35.0%
! TACTTGGATTTTGGACAGAA+TGG + tig0015000:58685-58704 Msa1355700:intron 35.0%
! ACTTGGATTTTGGACAGAAT+GGG + tig0015000:58686-58705 Msa1355700:intron 35.0%
TCTGACGTATTTGATATGTG+GGG + tig0015000:58809-58828 Msa1355700:intron 35.0%
TTTGATATGTGGGGTGATAA+AGG + tig0015000:58818-58837 Msa1355700:intron 35.0%
! GAAAGTCATCAGGTAGTTTT+TGG + tig0015000:59141-59160 Msa1355700:intron 35.0%
TATCGAGAGCTTCGTAAATA+TGG - tig0015000:59425-59444 None:intergenic 35.0%
CCACATCAAGAAAATACATC+TGG - tig0015000:59507-59526 None:intergenic 35.0%
! CCAGATGTATTTTCTTGATG+TGG + tig0015000:59504-59523 Msa1355700:intron 35.0%
GAAAGTAATCACGAAGATGA+TGG + tig0015000:59544-59563 Msa1355700:CDS 35.0%
!! ACCTGATTGGTAATGTAAAC+CGG - tig0015000:59654-59673 None:intergenic 35.0%
!! TGCATGTTGATAGCTAATGA+AGG + tig0015000:59742-59761 Msa1355700:intron 35.0%
! TAAATTTTATGGAGACCACG+TGG + tig0015000:59788-59807 Msa1355700:intron 35.0%
TGTTTGAATCACTATTGGAC+AGG + tig0015000:59988-60007 Msa1355700:intron 35.0%
!!! TTAAGCATCTCTGGTTCTTT+TGG + tig0015000:60193-60212 Msa1355700:intron 35.0%
GGAAATTAAGCATGAAGATG+AGG + tig0015000:60240-60259 Msa1355700:CDS 35.0%
AAAAATCGAGAAGACATCTG+AGG + tig0015000:60263-60282 Msa1355700:CDS 35.0%
TGCTAAACAAGAGAGGTTAA+AGG + tig0015000:60294-60313 Msa1355700:CDS 35.0%
GCTGAAACCTGTTACAATAA+TGG - tig0015000:60467-60486 None:intergenic 35.0%
AATAAAACTTGAACAGGAGC+AGG - tig0015000:60489-60508 None:intergenic 35.0%
ACAAGTCTACCTTAAGCTTT+CGG - tig0015000:60536-60555 None:intergenic 35.0%
ATCTCAAACAGATTTGGAGA+CGG + tig0015000:60803-60822 Msa1355700:intron 35.0%
GGTGTTTAAAGGGTTAAGTA+TGG + tig0015000:60993-61012 Msa1355700:intron 35.0%
!!! ATGGTGTTTTGGTTTCCAAA+AGG - tig0015000:61101-61120 None:intergenic 35.0%
!! AGGATAGTACATTTTTGAGC+AGG + tig0015000:61185-61204 Msa1355700:intron 35.0%
CAACATGGAAGGAAATAAGT+TGG - tig0015000:61216-61235 None:intergenic 35.0%
TCTTCTTGCCATATATCATG+CGG - tig0015000:61348-61367 None:intergenic 35.0%
! AACAAAGATCCTGGAGTATT+TGG + tig0015000:61541-61560 Msa1355700:intron 35.0%
CAAACTTAATCGAATGTGTG+TGG + tig0015000:61665-61684 Msa1355700:intron 35.0%
AGCAAGATAAGGTAGAATGA+AGG - tig0015000:61700-61719 None:intergenic 35.0%
TTCATTCTACCTTATCTTGC+TGG + tig0015000:61699-61718 Msa1355700:intron 35.0%
! AAGTTTGTTCCAGCAAGATA+AGG - tig0015000:61711-61730 None:intergenic 35.0%
! TGTTTAGGAAATCCCCTTTT+AGG + tig0015000:61744-61763 Msa1355700:intron 35.0%
TGTTGTCAATTATGCAATGG+GGG - tig0015000:62330-62349 None:intergenic 35.0%
! ATCTCTAGAAATGTGCTTCA+TGG - tig0015000:62401-62420 None:intergenic 35.0%
TTCATGCACCCTTCAATAAT+AGG - tig0015000:62507-62526 None:intergenic 35.0%
TAACTAGCCAGAAAACAAGT+AGG + tig0015000:62567-62586 Msa1355700:intron 35.0%
GAAGGTGGTTCATAAATGTT+AGG - tig0015000:62729-62748 None:intergenic 35.0%
! TTCATTTTCCTCGATTGAGA+AGG - tig0015000:62747-62766 None:intergenic 35.0%
TTCTCAATCGAGGAAAATGA+AGG + tig0015000:62746-62765 Msa1355700:intron 35.0%
TCTCAATCGAGGAAAATGAA+GGG + tig0015000:62747-62766 Msa1355700:intron 35.0%
AAGGGGAAAAATTGAAGGAA+CGG + tig0015000:62765-62784 Msa1355700:intron 35.0%
TCAATTAAACCAATGTGGTG+TGG - tig0015000:63499-63518 None:intergenic 35.0%
!!! CGGTAAACACCTTAGTTTTA+AGG + tig0015000:63569-63588 Msa1355700:intron 35.0%
AAAAAATGCGTAAATTCCGG+CGG + tig0015000:63617-63636 Msa1355700:intron 35.0%
CTCTCTATTTCAGTATGAGA+TGG - tig0015000:63820-63839 None:intergenic 35.0%
! AATTCAGTTTTTCCTACCTC+AGG - tig0015000:63862-63881 None:intergenic 35.0%
GAGGTAGGAAAAACTGAATT+AGG + tig0015000:63862-63881 Msa1355700:intron 35.0%
TGATGCAATGATAGCAGAAA+TGG + tig0015000:63986-64005 Msa1355700:intron 35.0%
CAAGTCTTCTACAAAAGACA+TGG - tig0015000:64175-64194 None:intergenic 35.0%
! TGATTGACTCTTTAACTAGC+AGG + tig0015000:64296-64315 Msa1355700:intron 35.0%
! GATTGACTCTTTAACTAGCA+GGG + tig0015000:64297-64316 Msa1355700:intron 35.0%
! ATTGACTCTTTAACTAGCAG+GGG + tig0015000:64298-64317 Msa1355700:intron 35.0%
! TAAAACTTTTTGCAAGAGGG+AGG + tig0015000:64341-64360 Msa1355700:intron 35.0%
ACAACAATGAACTAGTTGCT+AGG - tig0015000:64434-64453 None:intergenic 35.0%
ATCAAAATGTGGGAATTCTG+GGG + tig0015000:64688-64707 Msa1355700:intron 35.0%
TTAAACATTGTGTATTGCGG+CGG + tig0015000:64750-64769 Msa1355700:intron 35.0%
! CGGCTAATTTTTGCTTATTG+CGG - tig0015000:64868-64887 None:intergenic 35.0%
AATAAGCAAAAATTAGCCGC+CGG + tig0015000:64869-64888 Msa1355700:intron 35.0%
GTCGGTACACTCAAATATTT+GGG - tig0015000:64919-64938 None:intergenic 35.0%
TGTCGGTACACTCAAATATT+TGG - tig0015000:64920-64939 None:intergenic 35.0%
!! TTTTATTTCGTCGACGCTTT+TGG - tig0015000:65040-65059 None:intergenic 35.0%
CCTCATAAATTGGGATATAC+CGG - tig0015000:65267-65286 None:intergenic 35.0%
CTACGATACACCTCATAAAT+TGG - tig0015000:65277-65296 None:intergenic 35.0%
ACAAAAGATGCTCTTTCTGG+TGG + tig0015000:57318-57337 Msa1355700:CDS 40.0%
CACATAGAGCCTATTTGGAT+TGG + tig0015000:57661-57680 Msa1355700:intron 40.0%
ATTCTCCCAATCAATCTCAC+AGG - tig0015000:57717-57736 None:intergenic 40.0%
TTTGATGTGGCTAGATCTTG+CGG + tig0015000:58441-58460 Msa1355700:intron 40.0%
! TTTAGAGTAGATGAAGGCAC+TGG - tig0015000:58544-58563 None:intergenic 40.0%
! AACTTTTGGACACCACTTTC+CGG - tig0015000:58582-58601 None:intergenic 40.0%
TGCTTAGTGGCAAACATACT+TGG + tig0015000:58669-58688 Msa1355700:intron 40.0%
! CTTGGATTTTGGACAGAATG+GGG + tig0015000:58687-58706 Msa1355700:intron 40.0%
! TTGGATTTTGGACAGAATGG+GGG + tig0015000:58688-58707 Msa1355700:intron 40.0%
AGGTACACGTTATTGCATAG+CGG + tig0015000:58957-58976 Msa1355700:intron 40.0%
ACCTGATGACTTTCATGTGT+GGG - tig0015000:59135-59154 None:intergenic 40.0%
TACCTGATGACTTTCATGTG+TGG - tig0015000:59136-59155 None:intergenic 40.0%
AACAACATCTCTAACAGCAG+AGG - tig0015000:59181-59200 None:intergenic 40.0%
TACATTAGCTACTGCTGTTG+CGG + tig0015000:59252-59271 Msa1355700:CDS 40.0%
AGCAAGGTTACTGAATTAGC+AGG - tig0015000:59477-59496 None:intergenic 40.0%
TACATCTGGCCAAAAAAGCA+AGG - tig0015000:59493-59512 None:intergenic 40.0%
TTATACATGAAAGCTTGGGC+AGG - tig0015000:59702-59721 None:intergenic 40.0%
CAGCATCTCAAAAATTGCTG+AGG + tig0015000:60219-60238 Msa1355700:intron 40.0%
GACAAGTTGCTAAACAAGAG+AGG + tig0015000:60287-60306 Msa1355700:CDS 40.0%
! TAAACCAACCTGTTTCTCCT+CGG - tig0015000:60733-60752 None:intergenic 40.0%
CTGGTAAAACAAGCAGAAGA+CGG - tig0015000:60893-60912 None:intergenic 40.0%
ACAGGTAAACCAAATACTCC+AGG - tig0015000:61553-61572 None:intergenic 40.0%
GATTTGATATTCGTACGGGT+GGG - tig0015000:62543-62562 None:intergenic 40.0%
! ATTTTCCTCGATTGAGAAGG+TGG - tig0015000:62744-62763 None:intergenic 40.0%
CTCAATCGAGGAAAATGAAG+GGG + tig0015000:62748-62767 Msa1355700:intron 40.0%
!! TGCTTTAGATTTGGTTCGGA+TGG - tig0015000:63120-63139 None:intergenic 40.0%
!!! TTTACCGTGCGGTTTTGATT+TGG - tig0015000:63556-63575 None:intergenic 40.0%
! AAACTAAGGTGTTTACCGTG+CGG - tig0015000:63567-63586 None:intergenic 40.0%
TAGGAAACCGCCACTATTAA+CGG + tig0015000:63657-63676 Msa1355700:intron 40.0%
GAATAGACCGTTAATAGTGG+CGG - tig0015000:63667-63686 None:intergenic 40.0%
CCACTATTAACGGTCTATTC+CGG + tig0015000:63667-63686 Msa1355700:intron 40.0%
!! TGTATTACGGCAGTTTTAGC+CGG + tig0015000:63718-63737 Msa1355700:intron 40.0%
AAATCATGTGAGGTGTGTAC+TGG - tig0015000:63772-63791 None:intergenic 40.0%
AGAAAGGAAGTCATTCACGT+CGG - tig0015000:63967-63986 None:intergenic 40.0%
CTGCTATCATTGCATCAGAA+AGG - tig0015000:63983-64002 None:intergenic 40.0%
TGCAATGATAGCAGAAATGG+AGG + tig0015000:63989-64008 Msa1355700:intron 40.0%
TTGACTCTTTAACTAGCAGG+GGG + tig0015000:64299-64318 Msa1355700:intron 40.0%
TCAAAATGTGGGAATTCTGG+GGG + tig0015000:64689-64708 Msa1355700:intron 40.0%
CCTAGTGGCAGCAAAAATAA+CGG + tig0015000:64797-64816 Msa1355700:intron 40.0%
AAAAAACGCGTAAATTCCGG+CGG - tig0015000:64888-64907 None:intergenic 40.0%
CCGGTATATCCCAATTTATG+AGG + tig0015000:65264-65283 Msa1355700:intron 40.0%
!! AAGGCACTGGCTTAACAAAC+TGG - tig0015000:58531-58550 None:intergenic 45.0%
TCGACAGCTGGAATATGAGT+AGG - tig0015000:59084-59103 None:intergenic 45.0%
TACTCATATTCCAGCTGTCG+AGG + tig0015000:59083-59102 Msa1355700:CDS 45.0%
GGATTAAATGAGCATCCTGG+AGG - tig0015000:59114-59133 None:intergenic 45.0%
GTGGGATTAAATGAGCATCC+TGG - tig0015000:59117-59136 None:intergenic 45.0%
TCCCACACATGAAAGTCATC+AGG + tig0015000:59131-59150 Msa1355700:CDS 45.0%
CAGCAGTAGCTAATGTATCC+TGG - tig0015000:59249-59268 None:intergenic 45.0%
AAATGAATTGGGCCCTGAAC+CGG + tig0015000:59297-59316 Msa1355700:CDS 45.0%
TCTCCAGCAGGAACAGTTAA+AGG - tig0015000:59325-59344 None:intergenic 45.0%
TCAGAAATAGCTTCTCCAGC+AGG - tig0015000:59337-59356 None:intergenic 45.0%
! GCCGGTTTACATTACCAATC+AGG + tig0015000:59650-59669 Msa1355700:intron 45.0%
AAAAAAGAATACCGGCCACG+TGG - tig0015000:59806-59825 None:intergenic 45.0%
TAGTAGAGAGAGAGAGGTGA+GGG - tig0015000:60157-60176 None:intergenic 45.0%
TTAGTAGAGAGAGAGAGGTG+AGG - tig0015000:60158-60177 None:intergenic 45.0%
TACTTGTGCTTTCCTAAGCG+AGG - tig0015000:60328-60347 None:intergenic 45.0%
TGGATCCATCCGAAAGCTTA+AGG + tig0015000:60524-60543 Msa1355700:CDS 45.0%
GTCTACCTTAAGCTTTCGGA+TGG - tig0015000:60532-60551 None:intergenic 45.0%
! GTTGCACCCTTCTAAAGGAT+CGG + tig0015000:60668-60687 Msa1355700:CDS 45.0%
AAGCATAGAGAAGAGAGGGT+TGG + tig0015000:60696-60715 Msa1355700:CDS 45.0%
CAAACAGATTTGGAGACGGT+TGG + tig0015000:60807-60826 Msa1355700:intron 45.0%
!!! CGTCTTCTGCTTGTTTTACC+AGG + tig0015000:60891-60910 Msa1355700:intron 45.0%
!! TTGTTTTACCAGGTGCTTCG+TGG + tig0015000:60901-60920 Msa1355700:intron 45.0%
TGGCACAAGGTTTAAGTGTG+TGG + tig0015000:60921-60940 Msa1355700:intron 45.0%
ATGCGGAGCGACTTAAGTTA+GGG - tig0015000:61331-61350 None:intergenic 45.0%
AAGTCGCTCCGCATGATATA+TGG + tig0015000:61337-61356 Msa1355700:intron 45.0%
GGACTGTTCGATGAAAGAGA+TGG + tig0015000:62114-62133 Msa1355700:intron 45.0%
GGTGCATGAACGATGTATCT+GGG + tig0015000:62517-62536 Msa1355700:intron 45.0%
CGATTTGATATTCGTACGGG+TGG - tig0015000:62544-62563 None:intergenic 45.0%
!! CGAGGTACCTACTTGTTTTC+TGG - tig0015000:62577-62596 None:intergenic 45.0%
GAGTAGATAGTAGCAAGACG+TGG + tig0015000:62654-62673 Msa1355700:intron 45.0%
ATGAACCACCTTCTCAATCG+AGG + tig0015000:62736-62755 Msa1355700:intron 45.0%
TGTGGTGTGGTTTGAATCGT+TGG - tig0015000:63486-63505 None:intergenic 45.0%
CGATTCAAACCACACCACAT+TGG + tig0015000:63487-63506 Msa1355700:intron 45.0%
!!! CGTGCGGTTTTGATTTGGTT+CGG - tig0015000:63551-63570 None:intergenic 45.0%
CGAACCAAATCAAAACCGCA+CGG + tig0015000:63549-63568 Msa1355700:intron 45.0%
!!! AAATTCCGGCGGTTTTGTTG+CGG + tig0015000:63628-63647 Msa1355700:intron 45.0%
CCGGAATAGACCGTTAATAG+TGG - tig0015000:63670-63689 None:intergenic 45.0%
AGAACGTGAAGGAACAACAC+CGG - tig0015000:63740-63759 None:intergenic 45.0%
GGTGAAGACTTAGAACGTGA+AGG - tig0015000:63751-63770 None:intergenic 45.0%
TACCTGCAAACCATATACGC+TGG - tig0015000:64015-64034 None:intergenic 45.0%
AACTGCCAGTTTACACCTAG+TGG + tig0015000:64782-64801 Msa1355700:intron 45.0%
!!! CCGTTATTTTTGCTGCCACT+AGG - tig0015000:64800-64819 None:intergenic 45.0%
ACCGCCAGTGAAGTTTATAG+TGG + tig0015000:64830-64849 Msa1355700:intron 45.0%
GCCACTATAAACTTCACTGG+CGG - tig0015000:64834-64853 None:intergenic 45.0%
GCCAGTGAAGTTTATAGTGG+CGG + tig0015000:64833-64852 Msa1355700:intron 45.0%
!! GAGGTGCCGTATGTTTAATG+AGG - tig0015000:65330-65349 None:intergenic 45.0%
GATGATGCTATACTGCGAAC+AGG - tig0015000:65374-65393 None:intergenic 45.0%
!! CAAAATAAATAAATAAAAAT+GGG - tig0015000:57408-57427 None:intergenic 5.0%
CAAGGAAGGGGAAGAAAGCA+TGG + tig0015000:57247-57266 Msa1355700:CDS 50.0%
ACACGCGAAAAACCGGAAAG+TGG + tig0015000:58567-58586 Msa1355700:CDS 50.0%
TGTCATGCAGACGCAGATGA+AGG + tig0015000:58918-58937 Msa1355700:intron 50.0%
!! CAGTTAAAGGCACCGGTTCA+GGG - tig0015000:59312-59331 None:intergenic 50.0%
!! ACAGTTAAAGGCACCGGTTC+AGG - tig0015000:59313-59332 None:intergenic 50.0%
! GCAGGAACAGTTAAAGGCAC+CGG - tig0015000:59319-59338 None:intergenic 50.0%
GTGCCTTTAACTGTTCCTGC+TGG + tig0015000:59319-59338 Msa1355700:CDS 50.0%
AAGCTTGGGCAGGAAGGAAA+TGG - tig0015000:59692-59711 None:intergenic 50.0%
ACATGAAAGCTTGGGCAGGA+AGG - tig0015000:59698-59717 None:intergenic 50.0%
! TTTTATGGAGACCACGTGGC+CGG + tig0015000:59792-59811 Msa1355700:intron 50.0%
TTGTGCTTTCCTAAGCGAGG+AGG - tig0015000:60325-60344 None:intergenic 50.0%
GGGTTGTTGCACCCTTCTAA+AGG + tig0015000:60663-60682 Msa1355700:intron 50.0%
TTCCAAAGCCGAGGAGAAAC+AGG + tig0015000:60722-60741 Msa1355700:CDS 50.0%
! AACCTGTTTCTCCTCGGCTT+TGG - tig0015000:60727-60746 None:intergenic 50.0%
AAAGCCGAGGAGAAACAGGT+TGG + tig0015000:60726-60745 Msa1355700:intron 50.0%
AGACGGCACCAACTTATTGC+AGG - tig0015000:60876-60895 None:intergenic 50.0%
CATGCGGAGCGACTTAAGTT+AGG - tig0015000:61332-61351 None:intergenic 50.0%
TGGTTTACCTGTGCACTTCG+AGG + tig0015000:61561-61580 Msa1355700:intron 50.0%
GGTTTACCTGTGCACTTCGA+GGG + tig0015000:61562-61581 Msa1355700:intron 50.0%
TTCTTACCCTCGAAGTGCAC+AGG - tig0015000:61571-61590 None:intergenic 50.0%
GGACACTACTGTAAGACCGA+GGG - tig0015000:61883-61902 None:intergenic 50.0%
GGGTGCATGAACGATGTATC+TGG + tig0015000:62516-62535 Msa1355700:intron 50.0%
GTGGCGTTCAGAAAAACTGC+CGG - tig0015000:63689-63708 None:intergenic 50.0%
! CTCAGGATCAGACTCTGGAA+CGG - tig0015000:63845-63864 None:intergenic 50.0%
! GGAAGTCATTCACGTCGGTT+TGG - tig0015000:63962-63981 None:intergenic 50.0%
GAAATGGAGGCCAGCGTATA+TGG + tig0015000:64002-64021 Msa1355700:intron 50.0%
AGGGAGGAGCAAGTATGAAG+AGG + tig0015000:64357-64376 Msa1355700:intron 50.0%
GGGAGGAGCAAGTATGAAGA+GGG + tig0015000:64358-64377 Msa1355700:intron 50.0%
TGCTGCCACTAGGTGTAAAC+TGG - tig0015000:64790-64809 None:intergenic 50.0%
GCCGCCACTATAAACTTCAC+TGG - tig0015000:64837-64856 None:intergenic 50.0%
GGTGAGGGAGGATGAGAGAA+TGG - tig0015000:60142-60161 None:intergenic 55.0%
TAGAGAGAGAGAGGTGAGGG+AGG - tig0015000:60154-60173 None:intergenic 55.0%
AAGGCATGTCCTCCTCGCTT+AGG + tig0015000:60313-60332 Msa1355700:CDS 55.0%
! GGTTGGTTGTTCCAAAGCCG+AGG + tig0015000:60713-60732 Msa1355700:CDS 55.0%
CGGACACTACTGTAAGACCG+AGG - tig0015000:61884-61903 None:intergenic 55.0%
CACAAGGACAGCTGCTGTAG+CGG - tig0015000:62449-62468 None:intergenic 55.0%
CAGCTGTCCTTGTGAACTCG+TGG + tig0015000:62455-62474 Msa1355700:intron 55.0%
TCCTTGTGAACTCGTGGCTG+AGG + tig0015000:62461-62480 Msa1355700:intron 55.0%
CCTTGTGAACTCGTGGCTGA+GGG + tig0015000:62462-62481 Msa1355700:intron 55.0%
!!! GGTTTTGTTGCGGCGGTTGT+AGG + tig0015000:63638-63657 Msa1355700:intron 55.0%
CGTTCCAGAGTCTGATCCTG+AGG + tig0015000:63843-63862 Msa1355700:intron 55.0%
CCTACCTCAGGATCAGACTC+TGG - tig0015000:63850-63869 None:intergenic 55.0%
CCAGAGTCTGATCCTGAGGT+AGG + tig0015000:63847-63866 Msa1355700:intron 55.0%
! GGCCAGCGTATATGGTTTGC+AGG + tig0015000:64010-64029 Msa1355700:intron 55.0%
AGGGGGACTGCTCCTTTATG+AGG + tig0015000:64316-64335 Msa1355700:intron 55.0%
ATACGGCACCTCTGACAGTG+AGG + tig0015000:65338-65357 Msa1355700:intron 55.0%
TACGGCACCTCTGACAGTGA+GGG + tig0015000:65339-65358 Msa1355700:intron 55.0%
TTGTAGCCCCTCACTGTCAG+AGG - tig0015000:65349-65368 None:intergenic 55.0%
TCTGACAGTGAGGGGCTACA+AGG + tig0015000:65348-65367 Msa1355700:intron 55.0%
GGAGGATCAACCTCGACAGC+TGG - tig0015000:59096-59115 None:intergenic 60.0%
! GCTGTCGAGGTTGATCCTCC+AGG + tig0015000:59096-59115 Msa1355700:CDS 60.0%
ACCAGGTGCTTCGTGGCACA+AGG + tig0015000:60908-60927 Msa1355700:intron 60.0%
! ACCTTGTGCCACGAAGCACC+TGG - tig0015000:60912-60931 None:intergenic 60.0%
CCCTCAGCCACGAGTTCACA+AGG - tig0015000:62465-62484 None:intergenic 60.0%
!!! TTCCGGCGGTTTTGTTGCGG+CGG + tig0015000:63631-63650 Msa1355700:intron 60.0%
AACCGCCGCAACAAAACCGC+CGG - tig0015000:63636-63655 None:intergenic 60.0%
ACGGCACCTCTGACAGTGAG+GGG + tig0015000:65340-65359 Msa1355700:intron 60.0%
Chromosome Type Strat End Strand Name
tig0015000 gene 57175 65544 57175 ID=Msa1355700;Name=Msa1355700
tig0015000 mRNA 57175 65544 57175 ID=Msa1355700-mRNA-1;Parent=Msa1355700;Name=Msa1355700-mRNA-1;_AED=0.20;_eAED=0.20;_QI=50|0.8|0.81|0.90|0.7|0.81|11|0|354
tig0015000 exon 57175 57393 57175 ID=Msa1355700-mRNA-1:exon:9563;Parent=Msa1355700-mRNA-1
tig0015000 exon 58455 58627 58455 ID=Msa1355700-mRNA-1:exon:9564;Parent=Msa1355700-mRNA-1
tig0015000 exon 58791 58814 58791 ID=Msa1355700-mRNA-1:exon:9565;Parent=Msa1355700-mRNA-1
tig0015000 exon 59072 59152 59072 ID=Msa1355700-mRNA-1:exon:9566;Parent=Msa1355700-mRNA-1
tig0015000 exon 59250 59363 59250 ID=Msa1355700-mRNA-1:exon:9567;Parent=Msa1355700-mRNA-1
tig0015000 exon 59508 59596 59508 ID=Msa1355700-mRNA-1:exon:9568;Parent=Msa1355700-mRNA-1
tig0015000 exon 60010 60129 60010 ID=Msa1355700-mRNA-1:exon:9569;Parent=Msa1355700-mRNA-1
tig0015000 exon 60222 60344 60222 ID=Msa1355700-mRNA-1:exon:9570;Parent=Msa1355700-mRNA-1
tig0015000 exon 60479 60545 60479 ID=Msa1355700-mRNA-1:exon:9571;Parent=Msa1355700-mRNA-1
tig0015000 exon 60664 60743 60664 ID=Msa1355700-mRNA-1:exon:9572;Parent=Msa1355700-mRNA-1
tig0015000 exon 65520 65544 65520 ID=Msa1355700-mRNA-1:exon:9573;Parent=Msa1355700-mRNA-1
tig0015000 five_prime_UTR 57175 57224 57175 ID=Msa1355700-mRNA-1:five_prime_utr;Parent=Msa1355700-mRNA-1
tig0015000 CDS 57225 57393 57225 ID=Msa1355700-mRNA-1:cds;Parent=Msa1355700-mRNA-1
tig0015000 CDS 58455 58627 58455 ID=Msa1355700-mRNA-1:cds;Parent=Msa1355700-mRNA-1
tig0015000 CDS 58791 58814 58791 ID=Msa1355700-mRNA-1:cds;Parent=Msa1355700-mRNA-1
tig0015000 CDS 59072 59152 59072 ID=Msa1355700-mRNA-1:cds;Parent=Msa1355700-mRNA-1
tig0015000 CDS 59250 59363 59250 ID=Msa1355700-mRNA-1:cds;Parent=Msa1355700-mRNA-1
tig0015000 CDS 59508 59596 59508 ID=Msa1355700-mRNA-1:cds;Parent=Msa1355700-mRNA-1
tig0015000 CDS 60010 60129 60010 ID=Msa1355700-mRNA-1:cds;Parent=Msa1355700-mRNA-1
tig0015000 CDS 60222 60344 60222 ID=Msa1355700-mRNA-1:cds;Parent=Msa1355700-mRNA-1
tig0015000 CDS 60479 60545 60479 ID=Msa1355700-mRNA-1:cds;Parent=Msa1355700-mRNA-1
tig0015000 CDS 60664 60743 60664 ID=Msa1355700-mRNA-1:cds;Parent=Msa1355700-mRNA-1
tig0015000 CDS 65520 65544 65520 ID=Msa1355700-mRNA-1:cds;Parent=Msa1355700-mRNA-1
Gene Sequence

>Msa1355700

ATGGGGAAGAAATCGAAAAGTTCAAGGAAGGGGAAGAAAGCATGGAGAGCTAACATAAGCACCGAAGAAATTGAAGATTTCTTTGAGAAATCAACAAAAGATGCTCTTTCTGGTGGTTCTCTTCAAGCTGTTTCCAGTGATTCTCTCTTTTTCGAAGACAAATCCAAAGATCTTGCGGTAAAGAAGAAGATCGAAAAACATAGAGAAAAAGTGCTTCATGTTGATAGCATACTACAAAAAAACCAGTTTGTTAAGCCAGTGCCTTCATCTACTCTAAAGAAACACGCGAAAAACCGGAAAGTGGTGTCCAAAAGTTTTGTCGCCAATGAAAATATTCATAAGGAGGGTTCCGTGTTAGATTCTGACTTGTGCAAGCCTACTCATATTCCAGCTGTCGAGGTTGATCCTCCAGGATGCTCATTTAATCCCACACATGAAAGTCATCAGGATACATTAGCTACTGCTGTTGCGGAAGAAATGATTAAAGTCTACAGAAATGAATTGGGCCCTGAACCGGTGCCTTTAACTGTTCCTGCTGGAGAAGCTATTTCTGAAGAAGATATGTATTTTCTTGATGTGGAGAAGAGTGACGATGATGAAAGTAATCACGAAGATGATGGTGAAAATGAAGATGATGCGTCAGAGAAAAAGCCCATTAAAACAAAGAAAGTGACTAGAGTTGAGTTGAATAAGAGAATTCGGCGCAGAGAACAATTGAAAAAAGAAGCCGAATCAAAGAAGAAGAAGAATTTCTCAAAAGAAATTGATAGCATCTCAAAAATTGCTGAGGAAATTAAGCATGAAGATGAGGAAAAATCGAGAAGACATCTGAGGCGACAAGTTGCTAAACAAGAGAGGTTAAAGGCATGTCCTCCTCGCTTAGGAAAGCACAAGTTTCAGCCTGCTCCTGTTCAAGTTTTATTAAGCGAAGAGATAAATGGATCCATCCGAAAGCTTAAGGGTTGTTGCACCCTTCTAAAGGATCGGTATAAAAGCATAGAGAAGAGAGGGTTGGTTGTTCCAAAGCCGAGGAGAAACAGAAAAGTGAATTATCCATTAAGTTAA

Protein sequence

>Msa1355700

MGKKSKSSRKGKKAWRANISTEEIEDFFEKSTKDALSGGSLQAVSSDSLFFEDKSKDLAVKKKIEKHREKVLHVDSILQKNQFVKPVPSSTLKKHAKNRKVVSKSFVANENIHKEGSVLDSDLCKPTHIPAVEVDPPGCSFNPTHESHQDTLATAVAEEMIKVYRNELGPEPVPLTVPAGEAISEEDMYFLDVEKSDDDESNHEDDGENEDDASEKKPIKTKKVTRVELNKRIRRREQLKKEAESKKKKNFSKEIDSISKIAEEIKHEDEEKSRRHLRRQVAKQERLKACPPRLGKHKFQPAPVQVLLSEEINGSIRKLKGCCTLLKDRYKSIEKRGLVVPKPRRNRKVNYPLS*