AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0511490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511490 MtrunA17_Chr3g0117831 100.000 73 0 0 1 73 1 73 3.85e-44 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511490 AT1G64750.2 76.712 73 16 1 1 72 1 73 3.37e-11 53.5
Msa0511490 AT1G64750.1 76.712 73 16 1 1 72 1 73 3.37e-11 53.5

Find 40 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCTGTTTCATTTATATT+TGG 0.190193 3_4:-61085716 Msa0511490:three_prime_UTR
TTTCATTTATATTTGGTATT+GGG 0.244519 3_4:-61085709 Msa0511490:three_prime_UTR
GTTTCATTTATATTTGGTAT+TGG 0.268290 3_4:-61085710 Msa0511490:three_prime_UTR
CTCAACAATGGGAGGATGAT+TGG 0.329365 3_4:-61086095 Msa0511490:CDS
TTGGCATCTAGCTTTATGTT+TGG 0.368291 3_4:-61085755 Msa0511490:three_prime_UTR
TGTGATTCTATATGATTAGT+TGG 0.393123 3_4:-61085774 Msa0511490:three_prime_UTR
GCAAAGTAATTACCCGGTAT+TGG 0.396702 3_4:+61087379 None:intergenic
ATTTATATTTGGTATTGGGT+TGG 0.401822 3_4:-61085705 Msa0511490:three_prime_UTR
CGATAAACCTTGGAGTGGTT+AGG 0.422444 3_4:+61087416 None:intergenic
TAAACTATGCCTTGTTATGA+AGG 0.436496 3_4:-61085895 Msa0511490:three_prime_UTR
TCAACAATGGGAGGATGATT+GGG 0.443446 3_4:-61086094 Msa0511490:CDS
TCATTCAATTCAACCAATAC+CGG 0.446119 3_4:-61087392 Msa0511490:five_prime_UTR
ATTTCTCTGTTCAGCTGAGA+AGG 0.461195 3_4:-61086050 Msa0511490:CDS
GCTTGTAAAGGAAGTAAGAA+AGG 0.491583 3_4:+61087473 None:intergenic
TGTTCAGCTGAGAAGGGAGT+TGG 0.494913 3_4:-61086043 Msa0511490:CDS
GAAAGAAGTAACTCAACAAT+GGG 0.498445 3_4:-61086106 Msa0511490:CDS
GAAGAGTTTGAAATCAATGA+AGG 0.502774 3_4:-61087133 Msa0511490:intron
ATTGAATGAACGATAAACCT+TGG 0.515059 3_4:+61087406 None:intergenic
AGAATCTTGTGTGCTTGTAA+AGG 0.524189 3_4:+61087461 None:intergenic
GAGTGGGATGACATGGAGGA+AGG 0.532354 3_4:-61086129 Msa0511490:CDS
TTTCTCTGTTCAGCTGAGAA+GGG 0.558420 3_4:-61086049 Msa0511490:CDS
AGCCTTTGCTTCAGTCGCCA+TGG 0.560336 3_4:+61087204 None:intergenic
GGTATCTGAGACTTTGAGCT+CGG 0.562408 3_4:-61085943 Msa0511490:three_prime_UTR
CATTCAATTCAACCAATACC+GGG 0.563039 3_4:-61087391 Msa0511490:intron
GGAAAGAAGTAACTCAACAA+TGG 0.565472 3_4:-61086107 Msa0511490:CDS
ATCCATGGCGACTGAAGCAA+AGG 0.576258 3_4:-61087206 Msa0511490:exon
ACTTGCAGAGTGGGATGACA+TGG 0.578383 3_4:-61086136 Msa0511490:intron
AGTGGGATGACATGGAGGAA+GGG 0.591985 3_4:-61086128 Msa0511490:CDS
TGCAGATTCAGATTTATCCA+TGG 0.592856 3_4:-61087221 Msa0511490:intron
ATAAGAATTAAACCACCTGC+TGG 0.593819 3_4:-61086008 Msa0511490:exon
TGTTACTAAAACAGCACACA+AGG 0.595630 3_4:-61085869 Msa0511490:three_prime_UTR
TGTGTAATGAGTTACAACTT+AGG 0.596314 3_4:-61085964 Msa0511490:three_prime_UTR
CATATAGAATCACAGAACTC+AGG 0.596950 3_4:+61085783 None:intergenic
TGAAGCAAAGGCTGTGACCG+AGG 0.600680 3_4:-61087194 Msa0511490:CDS
GTAACATTTCCTTCATAACA+AGG 0.614099 3_4:+61085886 None:intergenic
TAGATCGATCTTGACATCCT+CGG 0.618819 3_4:+61087177 None:intergenic
AGAAGTAACTCAACAATGGG+AGG 0.631574 3_4:-61086103 Msa0511490:CDS
AGCGAAACCTAACCACTCCA+AGG 0.652837 3_4:-61087423 Msa0511490:five_prime_UTR
ATGAACGATAAACCTTGGAG+TGG 0.655424 3_4:+61087411 None:intergenic
TGCAGAGTGGGATGACATGG+AGG 0.657206 3_4:-61086133 Msa0511490:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCTGTTTCATTTATATT+TGG - chr3_4:61087436-61087455 Msa0511490:five_prime_UTR 15.0%
!! TTTCATTTATATTTGGTATT+GGG - chr3_4:61087443-61087462 Msa0511490:five_prime_UTR 15.0%
!! TATTCTGTTTCATTTATATT+TGG - chr3_4:61087436-61087455 Msa0511490:five_prime_UTR 15.0%
!! TTTCATTTATATTTGGTATT+GGG - chr3_4:61087443-61087462 Msa0511490:five_prime_UTR 15.0%
!!! AAAACCCTAATTTTGATAAA+GGG + chr3_4:61085863-61085882 None:intergenic 20.0%
!!! AAAAACCCTAATTTTGATAA+AGG + chr3_4:61085864-61085883 None:intergenic 20.0%
!! AAGTTTCAAATTACATGATT+GGG + chr3_4:61086502-61086521 None:intergenic 20.0%
!! TAAGTTTCAAATTACATGAT+TGG + chr3_4:61086503-61086522 None:intergenic 20.0%
!! GTTTCATTTATATTTGGTAT+TGG - chr3_4:61087442-61087461 Msa0511490:five_prime_UTR 20.0%
!!! AAAACCCTAATTTTGATAAA+GGG + chr3_4:61085863-61085882 None:intergenic 20.0%
!!! AAAAACCCTAATTTTGATAA+AGG + chr3_4:61085864-61085883 None:intergenic 20.0%
!! AAGTTTCAAATTACATGATT+GGG + chr3_4:61086502-61086521 None:intergenic 20.0%
!! TAAGTTTCAAATTACATGAT+TGG + chr3_4:61086503-61086522 None:intergenic 20.0%
!! GTTTCATTTATATTTGGTAT+TGG - chr3_4:61087442-61087461 Msa0511490:five_prime_UTR 20.0%
!!! AATTTTGATAAAGGGGAATA+GGG + chr3_4:61085855-61085874 None:intergenic 25.0%
!!! TAATTTTGATAAAGGGGAAT+AGG + chr3_4:61085856-61085875 None:intergenic 25.0%
! TATTCCCCTTTATCAAAATT+AGG - chr3_4:61085855-61085874 Msa0511490:three_prime_UTR 25.0%
! ATTCCCCTTTATCAAAATTA+GGG - chr3_4:61085856-61085875 Msa0511490:three_prime_UTR 25.0%
!!! AAACCCTAATTTTGATAAAG+GGG + chr3_4:61085862-61085881 None:intergenic 25.0%
!! ATTATCTTTGCTTCTGTTTT+AGG - chr3_4:61086076-61086095 Msa0511490:CDS 25.0%
! AACATCACTGAAAATTTCTT+AGG + chr3_4:61086122-61086141 None:intergenic 25.0%
! CTTATACATAAGCACTTATT+TGG - chr3_4:61086423-61086442 Msa0511490:intron 25.0%
! ATTTCATACACGAAATAAAG+TGG + chr3_4:61086543-61086562 None:intergenic 25.0%
!! TGTTAATCCTATTTCTCATT+AGG - chr3_4:61086790-61086809 Msa0511490:intron 25.0%
!!! TGAATCTCATTTAGTTTGAT+TGG - chr3_4:61086858-61086877 Msa0511490:intron 25.0%
! ATTGGCATTTGTATGTTAAT+TGG - chr3_4:61086876-61086895 Msa0511490:intron 25.0%
! TGTGATTCTATATGATTAGT+TGG - chr3_4:61087378-61087397 Msa0511490:intron 25.0%
!! ATTTATATTTGGTATTGGGT+TGG - chr3_4:61087447-61087466 Msa0511490:five_prime_UTR 25.0%
!!! AATTTTGATAAAGGGGAATA+GGG + chr3_4:61085855-61085874 None:intergenic 25.0%
!!! TAATTTTGATAAAGGGGAAT+AGG + chr3_4:61085856-61085875 None:intergenic 25.0%
! TATTCCCCTTTATCAAAATT+AGG - chr3_4:61085855-61085874 Msa0511490:three_prime_UTR 25.0%
! ATTCCCCTTTATCAAAATTA+GGG - chr3_4:61085856-61085875 Msa0511490:three_prime_UTR 25.0%
!!! AAACCCTAATTTTGATAAAG+GGG + chr3_4:61085862-61085881 None:intergenic 25.0%
!! ATTATCTTTGCTTCTGTTTT+AGG - chr3_4:61086076-61086095 Msa0511490:CDS 25.0%
! AACATCACTGAAAATTTCTT+AGG + chr3_4:61086122-61086141 None:intergenic 25.0%
! CTTATACATAAGCACTTATT+TGG - chr3_4:61086423-61086442 Msa0511490:intron 25.0%
! ATTTCATACACGAAATAAAG+TGG + chr3_4:61086543-61086562 None:intergenic 25.0%
!! TGTTAATCCTATTTCTCATT+AGG - chr3_4:61086790-61086809 Msa0511490:intron 25.0%
!!! TGAATCTCATTTAGTTTGAT+TGG - chr3_4:61086858-61086877 Msa0511490:intron 25.0%
! ATTGGCATTTGTATGTTAAT+TGG - chr3_4:61086876-61086895 Msa0511490:intron 25.0%
! TGTGATTCTATATGATTAGT+TGG - chr3_4:61087378-61087397 Msa0511490:intron 25.0%
!! ATTTATATTTGGTATTGGGT+TGG - chr3_4:61087447-61087466 Msa0511490:five_prime_UTR 25.0%
ATTGAATGAACGATAAACCT+TGG + chr3_4:61085749-61085768 None:intergenic 30.0%
TCATTCAATTCAACCAATAC+CGG - chr3_4:61085760-61085779 Msa0511490:three_prime_UTR 30.0%
AGAACAAATGATTGCAATGA+AGG + chr3_4:61085800-61085819 None:intergenic 30.0%
GCGCATAAATTTCACAAATT+CGG + chr3_4:61085893-61085912 None:intergenic 30.0%
! GAAGAGTTTGAAATCAATGA+AGG - chr3_4:61086019-61086038 Msa0511490:exon 30.0%
TTGGCATTCAATTAATTACG+AGG - chr3_4:61086247-61086266 Msa0511490:intron 30.0%
ACAGCACTTATATACTAGAT+AGG + chr3_4:61086290-61086309 None:intergenic 30.0%
! TCTAGTATATAAGTGCTGTT+TGG - chr3_4:61086291-61086310 Msa0511490:intron 30.0%
! TGAACATTTGTTAGACTGTT+TGG - chr3_4:61086326-61086345 Msa0511490:intron 30.0%
! GAACATTTGTTAGACTGTTT+GGG - chr3_4:61086327-61086346 Msa0511490:intron 30.0%
CAAATTACATGATTGGGTTA+TGG + chr3_4:61086496-61086515 None:intergenic 30.0%
GCTGCATCATTTATATAATC+AGG + chr3_4:61086645-61086664 None:intergenic 30.0%
TTTCTTGACGACTTGAAATT+AGG - chr3_4:61086918-61086937 Msa0511490:intron 30.0%
GAAAGAAGTAACTCAACAAT+GGG - chr3_4:61087046-61087065 Msa0511490:intron 30.0%
TGTGTAATGAGTTACAACTT+AGG - chr3_4:61087188-61087207 Msa0511490:CDS 30.0%
! TAAACTATGCCTTGTTATGA+AGG - chr3_4:61087257-61087276 Msa0511490:intron 30.0%
GTAACATTTCCTTCATAACA+AGG + chr3_4:61087269-61087288 None:intergenic 30.0%
!! TTTTTCTATGAAGAGTGTGT+TGG - chr3_4:61087476-61087495 Msa0511490:five_prime_UTR 30.0%
ATTGAATGAACGATAAACCT+TGG + chr3_4:61085749-61085768 None:intergenic 30.0%
TCATTCAATTCAACCAATAC+CGG - chr3_4:61085760-61085779 Msa0511490:three_prime_UTR 30.0%
AGAACAAATGATTGCAATGA+AGG + chr3_4:61085800-61085819 None:intergenic 30.0%
GCGCATAAATTTCACAAATT+CGG + chr3_4:61085893-61085912 None:intergenic 30.0%
! GAAGAGTTTGAAATCAATGA+AGG - chr3_4:61086019-61086038 Msa0511490:exon 30.0%
TTGGCATTCAATTAATTACG+AGG - chr3_4:61086247-61086266 Msa0511490:intron 30.0%
ACAGCACTTATATACTAGAT+AGG + chr3_4:61086290-61086309 None:intergenic 30.0%
! TCTAGTATATAAGTGCTGTT+TGG - chr3_4:61086291-61086310 Msa0511490:intron 30.0%
! TGAACATTTGTTAGACTGTT+TGG - chr3_4:61086326-61086345 Msa0511490:intron 30.0%
! GAACATTTGTTAGACTGTTT+GGG - chr3_4:61086327-61086346 Msa0511490:intron 30.0%
CAAATTACATGATTGGGTTA+TGG + chr3_4:61086496-61086515 None:intergenic 30.0%
GCTGCATCATTTATATAATC+AGG + chr3_4:61086645-61086664 None:intergenic 30.0%
TTTCTTGACGACTTGAAATT+AGG - chr3_4:61086918-61086937 Msa0511490:intron 30.0%
GAAAGAAGTAACTCAACAAT+GGG - chr3_4:61087046-61087065 Msa0511490:intron 30.0%
TGTGTAATGAGTTACAACTT+AGG - chr3_4:61087188-61087207 Msa0511490:CDS 30.0%
! TAAACTATGCCTTGTTATGA+AGG - chr3_4:61087257-61087276 Msa0511490:intron 30.0%
GTAACATTTCCTTCATAACA+AGG + chr3_4:61087269-61087288 None:intergenic 30.0%
!! TTTTTCTATGAAGAGTGTGT+TGG - chr3_4:61087476-61087495 Msa0511490:five_prime_UTR 30.0%
GCTTGTAAAGGAAGTAAGAA+AGG + chr3_4:61085682-61085701 None:intergenic 35.0%
AGAATCTTGTGTGCTTGTAA+AGG + chr3_4:61085694-61085713 None:intergenic 35.0%
CATTCAATTCAACCAATACC+GGG - chr3_4:61085761-61085780 Msa0511490:three_prime_UTR 35.0%
TTGTGAAATTTATGCGCTGT+TGG - chr3_4:61085896-61085915 Msa0511490:three_prime_UTR 35.0%
TGTGAAATTTATGCGCTGTT+GGG - chr3_4:61085897-61085916 Msa0511490:three_prime_UTR 35.0%
TGCAGATTCAGATTTATCCA+TGG - chr3_4:61085931-61085950 Msa0511490:three_prime_UTR 35.0%
TAATTGCATCAGCGAAGAAA+CGG + chr3_4:61086060-61086079 None:intergenic 35.0%
!! TATTCATTAGTTTGCTTCCG+TGG - chr3_4:61086165-61086184 Msa0511490:intron 35.0%
ATCCTAATTCGTTTCTTCCA+CGG + chr3_4:61086185-61086204 None:intergenic 35.0%
GCATTCAATTAATTACGAGG+AGG - chr3_4:61086250-61086269 Msa0511490:intron 35.0%
TTACATGATTGGGTTATGGT+TGG + chr3_4:61086492-61086511 None:intergenic 35.0%
ATACACGAAATAAAGTGGTG+AGG + chr3_4:61086538-61086557 None:intergenic 35.0%
GTTCATGCCTAATGAGAAAT+AGG + chr3_4:61086800-61086819 None:intergenic 35.0%
ATTAGGCATGAACACTTCTA+GGG - chr3_4:61086807-61086826 Msa0511490:intron 35.0%
!! ACTTCTAGGGCGAAAATTAT+AGG - chr3_4:61086820-61086839 Msa0511490:intron 35.0%
TTCAAGTCGTCAAGAAAAGT+TGG + chr3_4:61086915-61086934 None:intergenic 35.0%
! GACTTGAAATTAGGAGGTTT+TGG - chr3_4:61086927-61086946 Msa0511490:intron 35.0%
ACATTAGATTGTGAGTGCAA+TGG + chr3_4:61086960-61086979 None:intergenic 35.0%
!! TTGTTTTACAACTTGCAGAG+TGG - chr3_4:61087006-61087025 Msa0511490:intron 35.0%
! TGTTTTACAACTTGCAGAGT+GGG - chr3_4:61087007-61087026 Msa0511490:intron 35.0%
GGAAAGAAGTAACTCAACAA+TGG - chr3_4:61087045-61087064 Msa0511490:intron 35.0%
ATAAGAATTAAACCACCTGC+TGG - chr3_4:61087144-61087163 Msa0511490:CDS 35.0%
ATCAAACAAAAATAGCCAGC+AGG + chr3_4:61087162-61087181 None:intergenic 35.0%
TGTTACTAAAACAGCACACA+AGG - chr3_4:61087283-61087302 Msa0511490:intron 35.0%
CATATAGAATCACAGAACTC+AGG + chr3_4:61087372-61087391 None:intergenic 35.0%
!! TTGGCATCTAGCTTTATGTT+TGG - chr3_4:61087397-61087416 Msa0511490:five_prime_UTR 35.0%
GCTTGTAAAGGAAGTAAGAA+AGG + chr3_4:61085682-61085701 None:intergenic 35.0%
AGAATCTTGTGTGCTTGTAA+AGG + chr3_4:61085694-61085713 None:intergenic 35.0%
CATTCAATTCAACCAATACC+GGG - chr3_4:61085761-61085780 Msa0511490:three_prime_UTR 35.0%
TTGTGAAATTTATGCGCTGT+TGG - chr3_4:61085896-61085915 Msa0511490:three_prime_UTR 35.0%
TGTGAAATTTATGCGCTGTT+GGG - chr3_4:61085897-61085916 Msa0511490:three_prime_UTR 35.0%
TGCAGATTCAGATTTATCCA+TGG - chr3_4:61085931-61085950 Msa0511490:three_prime_UTR 35.0%
TAATTGCATCAGCGAAGAAA+CGG + chr3_4:61086060-61086079 None:intergenic 35.0%
!! TATTCATTAGTTTGCTTCCG+TGG - chr3_4:61086165-61086184 Msa0511490:intron 35.0%
ATCCTAATTCGTTTCTTCCA+CGG + chr3_4:61086185-61086204 None:intergenic 35.0%
GCATTCAATTAATTACGAGG+AGG - chr3_4:61086250-61086269 Msa0511490:intron 35.0%
TTACATGATTGGGTTATGGT+TGG + chr3_4:61086492-61086511 None:intergenic 35.0%
ATACACGAAATAAAGTGGTG+AGG + chr3_4:61086538-61086557 None:intergenic 35.0%
GTTCATGCCTAATGAGAAAT+AGG + chr3_4:61086800-61086819 None:intergenic 35.0%
ATTAGGCATGAACACTTCTA+GGG - chr3_4:61086807-61086826 Msa0511490:intron 35.0%
!! ACTTCTAGGGCGAAAATTAT+AGG - chr3_4:61086820-61086839 Msa0511490:intron 35.0%
TTCAAGTCGTCAAGAAAAGT+TGG + chr3_4:61086915-61086934 None:intergenic 35.0%
! GACTTGAAATTAGGAGGTTT+TGG - chr3_4:61086927-61086946 Msa0511490:intron 35.0%
ACATTAGATTGTGAGTGCAA+TGG + chr3_4:61086960-61086979 None:intergenic 35.0%
!! TTGTTTTACAACTTGCAGAG+TGG - chr3_4:61087006-61087025 Msa0511490:intron 35.0%
! TGTTTTACAACTTGCAGAGT+GGG - chr3_4:61087007-61087026 Msa0511490:intron 35.0%
GGAAAGAAGTAACTCAACAA+TGG - chr3_4:61087045-61087064 Msa0511490:intron 35.0%
ATAAGAATTAAACCACCTGC+TGG - chr3_4:61087144-61087163 Msa0511490:CDS 35.0%
ATCAAACAAAAATAGCCAGC+AGG + chr3_4:61087162-61087181 None:intergenic 35.0%
TGTTACTAAAACAGCACACA+AGG - chr3_4:61087283-61087302 Msa0511490:intron 35.0%
CATATAGAATCACAGAACTC+AGG + chr3_4:61087372-61087391 None:intergenic 35.0%
!! TTGGCATCTAGCTTTATGTT+TGG - chr3_4:61087397-61087416 Msa0511490:five_prime_UTR 35.0%
! TCTGAAGAGCGTGAAAAACT+TGG + chr3_4:61085645-61085664 None:intergenic 40.0%
ATGAACGATAAACCTTGGAG+TGG + chr3_4:61085744-61085763 None:intergenic 40.0%
GCAAAGTAATTACCCGGTAT+TGG + chr3_4:61085776-61085795 None:intergenic 40.0%
GAAGGAGCAAAGTAATTACC+CGG + chr3_4:61085782-61085801 None:intergenic 40.0%
TAGATCGATCTTGACATCCT+CGG + chr3_4:61085978-61085997 None:intergenic 40.0%
AATTGCATCAGCGAAGAAAC+GGG + chr3_4:61086059-61086078 None:intergenic 40.0%
TTCCGTGGAAGAAACGAATT+AGG - chr3_4:61086180-61086199 Msa0511490:intron 40.0%
TGAGCTAGACTTTGTGTGTT+TGG - chr3_4:61086228-61086247 Msa0511490:intron 40.0%
AGACTGTTTGGGAGAACTTA+TGG - chr3_4:61086338-61086357 Msa0511490:intron 40.0%
CATTAGGCATGAACACTTCT+AGG - chr3_4:61086806-61086825 Msa0511490:intron 40.0%
GTCGTCAAGAAAAGTTGGAT+AGG + chr3_4:61086910-61086929 None:intergenic 40.0%
CTTGACGACTTGAAATTAGG+AGG - chr3_4:61086921-61086940 Msa0511490:intron 40.0%
AGAAGTAACTCAACAATGGG+AGG - chr3_4:61087049-61087068 Msa0511490:intron 40.0%
TCAACAATGGGAGGATGATT+GGG - chr3_4:61087058-61087077 Msa0511490:intron 40.0%
ATTTCTCTGTTCAGCTGAGA+AGG - chr3_4:61087102-61087121 Msa0511490:intron 40.0%
TTTCTCTGTTCAGCTGAGAA+GGG - chr3_4:61087103-61087122 Msa0511490:intron 40.0%
AAACAAAAATAGCCAGCAGG+TGG + chr3_4:61087159-61087178 None:intergenic 40.0%
! TCTGAAGAGCGTGAAAAACT+TGG + chr3_4:61085645-61085664 None:intergenic 40.0%
ATGAACGATAAACCTTGGAG+TGG + chr3_4:61085744-61085763 None:intergenic 40.0%
GCAAAGTAATTACCCGGTAT+TGG + chr3_4:61085776-61085795 None:intergenic 40.0%
GAAGGAGCAAAGTAATTACC+CGG + chr3_4:61085782-61085801 None:intergenic 40.0%
TAGATCGATCTTGACATCCT+CGG + chr3_4:61085978-61085997 None:intergenic 40.0%
AATTGCATCAGCGAAGAAAC+GGG + chr3_4:61086059-61086078 None:intergenic 40.0%
TTCCGTGGAAGAAACGAATT+AGG - chr3_4:61086180-61086199 Msa0511490:intron 40.0%
TGAGCTAGACTTTGTGTGTT+TGG - chr3_4:61086228-61086247 Msa0511490:intron 40.0%
AGACTGTTTGGGAGAACTTA+TGG - chr3_4:61086338-61086357 Msa0511490:intron 40.0%
CATTAGGCATGAACACTTCT+AGG - chr3_4:61086806-61086825 Msa0511490:intron 40.0%
GTCGTCAAGAAAAGTTGGAT+AGG + chr3_4:61086910-61086929 None:intergenic 40.0%
CTTGACGACTTGAAATTAGG+AGG - chr3_4:61086921-61086940 Msa0511490:intron 40.0%
AGAAGTAACTCAACAATGGG+AGG - chr3_4:61087049-61087068 Msa0511490:intron 40.0%
TCAACAATGGGAGGATGATT+GGG - chr3_4:61087058-61087077 Msa0511490:intron 40.0%
ATTTCTCTGTTCAGCTGAGA+AGG - chr3_4:61087102-61087121 Msa0511490:intron 40.0%
TTTCTCTGTTCAGCTGAGAA+GGG - chr3_4:61087103-61087122 Msa0511490:intron 40.0%
AAACAAAAATAGCCAGCAGG+TGG + chr3_4:61087159-61087178 None:intergenic 40.0%
CGATAAACCTTGGAGTGGTT+AGG + chr3_4:61085739-61085758 None:intergenic 45.0%
ATGCCACTACTCTCTTCTCA+TGG - chr3_4:61086766-61086785 Msa0511490:intron 45.0%
TGCCACTACTCTCTTCTCAT+GGG - chr3_4:61086767-61086786 Msa0511490:intron 45.0%
CTCAACAATGGGAGGATGAT+TGG - chr3_4:61087057-61087076 Msa0511490:intron 45.0%
! GGTATCTGAGACTTTGAGCT+CGG - chr3_4:61087209-61087228 Msa0511490:exon 45.0%
CGATAAACCTTGGAGTGGTT+AGG + chr3_4:61085739-61085758 None:intergenic 45.0%
ATGCCACTACTCTCTTCTCA+TGG - chr3_4:61086766-61086785 Msa0511490:intron 45.0%
TGCCACTACTCTCTTCTCAT+GGG - chr3_4:61086767-61086786 Msa0511490:intron 45.0%
CTCAACAATGGGAGGATGAT+TGG - chr3_4:61087057-61087076 Msa0511490:intron 45.0%
! GGTATCTGAGACTTTGAGCT+CGG - chr3_4:61087209-61087228 Msa0511490:exon 45.0%
AGCGAAACCTAACCACTCCA+AGG - chr3_4:61085729-61085748 Msa0511490:three_prime_UTR 50.0%
ATCCATGGCGACTGAAGCAA+AGG - chr3_4:61085946-61085965 Msa0511490:three_prime_UTR 50.0%
CACCCATGAGAAGAGAGTAG+TGG + chr3_4:61086772-61086791 None:intergenic 50.0%
ACTTGCAGAGTGGGATGACA+TGG - chr3_4:61087016-61087035 Msa0511490:intron 50.0%
AGTGGGATGACATGGAGGAA+GGG - chr3_4:61087024-61087043 Msa0511490:intron 50.0%
TGTTCAGCTGAGAAGGGAGT+TGG - chr3_4:61087109-61087128 Msa0511490:intron 50.0%
AGCGAAACCTAACCACTCCA+AGG - chr3_4:61085729-61085748 Msa0511490:three_prime_UTR 50.0%
ATCCATGGCGACTGAAGCAA+AGG - chr3_4:61085946-61085965 Msa0511490:three_prime_UTR 50.0%
CACCCATGAGAAGAGAGTAG+TGG + chr3_4:61086772-61086791 None:intergenic 50.0%
ACTTGCAGAGTGGGATGACA+TGG - chr3_4:61087016-61087035 Msa0511490:intron 50.0%
AGTGGGATGACATGGAGGAA+GGG - chr3_4:61087024-61087043 Msa0511490:intron 50.0%
TGTTCAGCTGAGAAGGGAGT+TGG - chr3_4:61087109-61087128 Msa0511490:intron 50.0%
AGCCTTTGCTTCAGTCGCCA+TGG + chr3_4:61085951-61085970 None:intergenic 55.0%
TGAAGCAAAGGCTGTGACCG+AGG - chr3_4:61085958-61085977 Msa0511490:three_prime_UTR 55.0%
TGCAGAGTGGGATGACATGG+AGG - chr3_4:61087019-61087038 Msa0511490:intron 55.0%
GAGTGGGATGACATGGAGGA+AGG - chr3_4:61087023-61087042 Msa0511490:intron 55.0%
AGCCTTTGCTTCAGTCGCCA+TGG + chr3_4:61085951-61085970 None:intergenic 55.0%
TGAAGCAAAGGCTGTGACCG+AGG - chr3_4:61085958-61085977 Msa0511490:three_prime_UTR 55.0%
TGCAGAGTGGGATGACATGG+AGG - chr3_4:61087019-61087038 Msa0511490:intron 55.0%
GAGTGGGATGACATGGAGGA+AGG - chr3_4:61087023-61087042 Msa0511490:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 61085639 61087535 61085639 ID=Msa0511490;Name=Msa0511490
chr3_4 mRNA 61085639 61087535 61085639 ID=Msa0511490-mRNA-1;Parent=Msa0511490;Name=Msa0511490-mRNA-1;_AED=0.00;_eAED=0.00;_QI=158|1|1|1|0.5|0.33|3|381|73
chr3_4 exon 61085639 61086150 61085639 ID=Msa0511490-mRNA-1:exon:14792;Parent=Msa0511490-mRNA-1
chr3_4 exon 61087134 61087238 61087134 ID=Msa0511490-mRNA-1:exon:14791;Parent=Msa0511490-mRNA-1
chr3_4 exon 61087392 61087535 61087392 ID=Msa0511490-mRNA-1:exon:14790;Parent=Msa0511490-mRNA-1
chr3_4 five_prime_UTR 61087392 61087535 61087392 ID=Msa0511490-mRNA-1:five_prime_utr;Parent=Msa0511490-mRNA-1
chr3_4 five_prime_UTR 61087225 61087238 61087225 ID=Msa0511490-mRNA-1:five_prime_utr;Parent=Msa0511490-mRNA-1
chr3_4 CDS 61087134 61087224 61087134 ID=Msa0511490-mRNA-1:cds;Parent=Msa0511490-mRNA-1
chr3_4 CDS 61086020 61086150 61086020 ID=Msa0511490-mRNA-1:cds;Parent=Msa0511490-mRNA-1
chr3_4 three_prime_UTR 61085639 61086019 61085639 ID=Msa0511490-mRNA-1:three_prime_utr;Parent=Msa0511490-mRNA-1
Gene Sequence

>Msa0511490

ATGGCGACTGAAGCAAAGGCTGTGACCGAGGATGTCAAGATCGATCTATTCGAAGACGATGATGAGTTCGAAGAGTTTGAAATCAATGAAGAGTGGGATGACATGGAGGAAGGGAAAGAAGTAACTCAACAATGGGAGGATGATTGGGATGATGATGATGTTAGCGATGATTTCTCTGTTCAGCTGAGAAGGGAGTTGGAGAAGACTACTGATAAGAATTAA

Protein sequence

>Msa0511490

MATEAKAVTEDVKIDLFEDDDEFEEFEINEEWDDMEEGKEVTQQWEDDWDDDDVSDDFSVQLRRELEKTTDKN*