AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0691290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691290 MtrunA17_Chr4g0040381 94.564 883 23 2 1 873 1 868 0.0 1628
Msa0691290 MtrunA17_Chr4g0035141 76.000 875 89 12 1 873 1 756 0.0 1245
Msa0691290 MtrunA17_Chr2g0282131 32.636 239 139 7 1 226 1 230 4.06e-33 130
Msa0691290 MtrunA17_Chr5g0435361 27.155 232 113 4 13 199 8 228 1.58e-14 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691290 AT4G25730.1 60.000 855 301 12 4 853 2 820 0.0 941
Msa0691290 AT5G01230.1 33.473 239 137 7 1 226 1 230 1.84e-34 134
Msa0691290 AT5G13830.1 29.204 226 107 6 13 199 8 219 4.02e-15 75.9
Msa0691290 AT5G01230.2 48.333 60 28 1 1 60 1 57 1.01e-11 61.2

Find 230 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTGAAGATTTGAGGGTTT+TGG 0.056725 4_4:-59293868 Msa0691290:CDS
ATCTGCTGAGATATATATTT+TGG 0.117981 4_4:-59294680 Msa0691290:CDS
ATCTTCATCTGAATCATATT+TGG 0.153647 4_4:+59291113 None:intergenic
TCGAGGCGCGATTGCTATTC+AGG 0.166197 4_4:-59295728 Msa0691290:CDS
CAGACGAAATCAATCAAATT+TGG 0.171707 4_4:+59289905 None:intergenic
GGGATTGCCCAAGTGGTTTC+TGG 0.182660 4_4:-59290617 Msa0691290:CDS
GCCTCAGCCACCTTCTTTGC+AGG 0.204831 4_4:+59290502 None:intergenic
GTTAGAAATGGTTAATGATA+TGG 0.235764 4_4:-59289827 Msa0691290:three_prime_UTR
AGTAAGATATACTCTCTTTA+TGG 0.242198 4_4:+59292464 None:intergenic
CTCCCAATGTTGGTGGTGCT+TGG 0.262237 4_4:-59295612 Msa0691290:CDS
TCGGTCAATTTGCTTATTCT+TGG 0.270953 4_4:+59290384 None:intergenic
TGATGCAGACTCCCAACTTT+TGG 0.277133 4_4:-59291703 Msa0691290:CDS
AGGAAAATCATGAATGAAAA+TGG 0.282110 4_4:-59295670 Msa0691290:CDS
GGATTCGAGGAAATGGAATT+TGG 0.294730 4_4:+59295867 None:intergenic
AGAACGGTAACCGTGTTCTT+TGG 0.300601 4_4:+59295921 None:intergenic
GAATCATCGGAATCAGTTTC+AGG 0.300811 4_4:+59290772 None:intergenic
AAAATACCTCTTCAGTTGTT+AGG 0.308107 4_4:+59294005 None:intergenic
AGTATATCTTACTTACCTTC+TGG 0.323384 4_4:-59292454 Msa0691290:CDS
AATCTCAAAATCCATTTCAT+TGG 0.329088 4_4:+59290804 None:intergenic
CTAACTCTAGATTTACATTC+AGG 0.329912 4_4:+59295691 None:intergenic
AACACGCTTCTTCCGTGCTT+TGG 0.332263 4_4:+59290480 None:intergenic
AAACAATTAACCTTGGCTAT+TGG 0.339780 4_4:+59294580 None:intergenic
GGAAGGAAATAACTGAAAAT+AGG 0.342149 4_4:-59290076 Msa0691290:exon
TCCGAGTGGCAAGGCTCCTA+TGG 0.343540 4_4:-59290146 Msa0691290:CDS
AAATCAATCAAATTTGGAAT+AGG 0.347043 4_4:+59289911 None:intergenic
TGCCTTGCCACCCTTTGCCT+TGG 0.347609 4_4:+59290204 None:intergenic
TCCCAATGTTGGTGGTGCTT+GGG 0.351691 4_4:-59295611 Msa0691290:CDS
GCAAGGCACCAAAGGGCAGC+AGG 0.355143 4_4:-59290117 Msa0691290:CDS
TTTGGTGCCTTACCACCCTT+TGG 0.358283 4_4:+59290181 None:intergenic
GATACTCCTCTGGAGATTCT+TGG 0.360047 4_4:-59294085 Msa0691290:CDS
TTTACCCATTGTTGATGAAT+TGG 0.361246 4_4:+59295990 None:intergenic
TCTTTCGTGACAGGCTTAAC+TGG 0.364894 4_4:+59290571 None:intergenic
ATTCTGACGAAGAACGTAAA+AGG 0.372662 4_4:-59292159 Msa0691290:intron
ATCTCTCTGTGAAGATTTGA+GGG 0.373125 4_4:-59293874 Msa0691290:CDS
AAAGATCAAAGAAAATAAAA+TGG 0.374167 4_4:-59290866 Msa0691290:CDS
ATCTAAAGCATCCAATGAAA+TGG 0.378752 4_4:-59290815 Msa0691290:CDS
AGCTGGATCAGTAAAGCTTA+TGG 0.381413 4_4:+59294051 None:intergenic
TCAAGAAGCAAATCCTTTGA+TGG 0.387985 4_4:-59291082 Msa0691290:CDS
CTCGGAGCCCTGCCACCCTT+TGG 0.388717 4_4:+59290163 None:intergenic
CCCGTCGATCATCTCGTTAT+CGG 0.389719 4_4:-59295778 Msa0691290:CDS
GTAAGGCACCAAAGGGTGGC+AGG 0.390931 4_4:-59290171 Msa0691290:CDS
GTATATCTTACTTACCTTCT+GGG 0.392930 4_4:-59292453 Msa0691290:CDS
CTGAATGTAAATCTAGAGTT+AGG 0.399356 4_4:-59295690 Msa0691290:CDS
CACAAATATGTGGTTTAGTC+AGG 0.399550 4_4:-59291019 Msa0691290:CDS
TTGTTACTGACTGCTATAGA+TGG 0.406985 4_4:-59289982 Msa0691290:three_prime_UTR
CTCGATCTCTGTGCCGCCCC+TGG 0.413783 4_4:-59295832 Msa0691290:CDS
AATCTCTCTGTGAAGATTTG+AGG 0.419218 4_4:-59293875 Msa0691290:CDS
AGCGTGAGGATTCGAGGAAA+TGG 0.422603 4_4:+59295860 None:intergenic
AAGTTGGGAGTCTGCATCAT+AGG 0.427509 4_4:+59291707 None:intergenic
TTCCCTTACCAGCCTTAACT+TGG 0.434158 4_4:+59290299 None:intergenic
GGGTGGTGGCAAGGCACCAA+AGG 0.435786 4_4:-59290125 Msa0691290:CDS
TTTGATGTTATTCTTCATGA+TGG 0.436220 4_4:-59295637 Msa0691290:CDS
ACATATTTGTGATCTCCTCT+TGG 0.436244 4_4:+59291031 None:intergenic
GCAACATCCTCTTTCGTGAC+AGG 0.437692 4_4:+59290562 None:intergenic
CATATTTGTGATCTCCTCTT+GGG 0.439598 4_4:+59291032 None:intergenic
TTCCTCATCCAGAAACCACT+TGG 0.441265 4_4:+59290609 None:intergenic
GTTAGGTCATGATCCTTGAT+TGG 0.441802 4_4:+59294022 None:intergenic
GCCCAAGTGGTTTCTGGATG+AGG 0.441943 4_4:-59290611 Msa0691290:CDS
TTAGCAGAAACAGTTAGAAA+TGG 0.442117 4_4:-59289839 Msa0691290:three_prime_UTR
TTCCTTCCCTTCTTGCCGCC+CGG 0.443588 4_4:+59290091 None:intergenic
GACAAGGCGCGGAAAGCTAC+AGG 0.445252 4_4:-59293197 Msa0691290:CDS
TCCACCTCAGCTGTAGTAGC+AGG 0.451487 4_4:+59293627 None:intergenic
AAGAGTGATGCGAGGAAAAG+TGG 0.451838 4_4:-59290253 Msa0691290:CDS
TAACTGTTTCTGCTAACAAC+CGG 0.452510 4_4:+59289846 None:intergenic
TCTGTGCCGCCCCTGGTGGT+TGG 0.454977 4_4:-59295825 Msa0691290:CDS
TGATAGAATACTCAACGAAA+TGG 0.455129 4_4:-59293577 Msa0691290:CDS
GGATGACAGCGAGAATGAAA+TGG 0.459874 4_4:-59290956 Msa0691290:CDS
TAAACATACAAAATTTGCCT+TGG 0.462905 4_4:+59290017 None:intergenic
TTCACCAATTCATCAACAAT+GGG 0.462946 4_4:-59295994 Msa0691290:exon
AAAGGGTGGCAAGGCACCAA+AGG 0.463780 4_4:-59290197 Msa0691290:CDS
AACCAGATATGATGAACAAA+TGG 0.466646 4_4:-59291811 Msa0691290:intron
GAAGAGAAGAGGTTGAAGGA+GGG 0.472790 4_4:+59296017 None:intergenic
CAAGGCACCAAAGGGCAGCA+GGG 0.472964 4_4:-59290116 Msa0691290:CDS
CTCAGCTGTAGTAGCAGGTT+CGG 0.473439 4_4:+59293632 None:intergenic
TCCTTGATTGGTATATCAGC+TGG 0.474319 4_4:+59294034 None:intergenic
TGATGCGAGGAAAAGTGGTA+TGG 0.476078 4_4:-59290248 Msa0691290:CDS
ATGCAGATGGTGGATGTACT+TGG 0.476660 4_4:-59294488 Msa0691290:intron
AGCTCCATACCTCCAAAAGT+TGG 0.477483 4_4:+59291691 None:intergenic
GGCCGGGCGGCAAGAAGGGA+AGG 0.478092 4_4:-59290093 Msa0691290:CDS
GCGCCTCGAAGTGGTTTAAT+CGG 0.478159 4_4:+59295742 None:intergenic
ATGCGAGGATCAATCTTAGC+AGG 0.479923 4_4:+59294640 None:intergenic
TGTCCAAGTTAAGGCTGGTA+AGG 0.480802 4_4:-59290302 Msa0691290:CDS
AAGGCACCAAAGGGCAGCAG+GGG 0.481308 4_4:-59290115 Msa0691290:CDS
GAAGAAAGGTGTCCAAGTTA+AGG 0.482664 4_4:-59290311 Msa0691290:CDS
GAGGAAAAGTGGTATGGGTA+AGG 0.487792 4_4:-59290242 Msa0691290:CDS
GGCTCCTATGGGTGGTGGCA+AGG 0.490743 4_4:-59290134 Msa0691290:CDS
AGCCCAAGCACCACCAACAT+TGG 0.491668 4_4:+59295609 None:intergenic
GAAAAGTTCTTGTTGATCGC+AGG 0.493458 4_4:-59290279 Msa0691290:CDS
ATCTTACTTACCTTCTGGGA+TGG 0.493491 4_4:-59292449 Msa0691290:CDS
TCCAGCTGATATACCAATCA+AGG 0.495100 4_4:-59294035 Msa0691290:CDS
AGCAAAAGAGGCATCGTGAC+GGG 0.496805 4_4:-59294457 Msa0691290:intron
GCCCAAGCACCACCAACATT+GGG 0.496890 4_4:+59295610 None:intergenic
ATATGATTCAGATGAAGATC+AGG 0.497095 4_4:-59291109 Msa0691290:CDS
CCCATAGGAGCCTTGCCACT+CGG 0.497790 4_4:+59290145 None:intergenic
TTGGAACGGTCAGATATGTC+TGG 0.499475 4_4:+59290403 None:intergenic
CTTCACCAATTCATCAACAA+TGG 0.500458 4_4:-59295995 Msa0691290:exon
TTGGTAACAAAAGTTCCCTT+AGG 0.503952 4_4:+59295520 None:intergenic
TTTGTGATCTCCTCTTGGGT+GGG 0.504064 4_4:+59291036 None:intergenic
TTGGAAACAATAAGCAAAAG+AGG 0.505563 4_4:-59294469 Msa0691290:CDS
TAAGTACATGTTTGATGACC+AGG 0.505574 4_4:-59290638 Msa0691290:CDS
ACCTGCAAAGAAGGTGGCTG+AGG 0.505683 4_4:-59290503 Msa0691290:CDS
ATTTGTGATCTCCTCTTGGG+TGG 0.505793 4_4:+59291035 None:intergenic
TGAAGAAGAGAAGAGGTTGA+AGG 0.506713 4_4:+59296013 None:intergenic
GCTCCATACCTCCAAAAGTT+GGG 0.507010 4_4:+59291692 None:intergenic
AGGAAAAGTGGTATGGGTAA+GGG 0.507350 4_4:-59290241 Msa0691290:CDS
CCGAGTGGCAAGGCTCCTAT+GGG 0.507623 4_4:-59290145 Msa0691290:CDS
AGAAGAGAAGAGGTTGAAGG+AGG 0.507708 4_4:+59296016 None:intergenic
ATGGGTAAAGCAAAAGCAAA+AGG 0.507777 4_4:-59295976 Msa0691290:CDS
TCTGTAAGTGGCACCATCAA+AGG 0.508040 4_4:+59291069 None:intergenic
TCGGAATCAGTTTCAGGTGC+AGG 0.511470 4_4:+59290778 None:intergenic
GTTACCGTTCTCGTGCATCA+TGG 0.512816 4_4:-59295909 Msa0691290:CDS
CAAGGCACCAAAGGGTGGTA+AGG 0.514100 4_4:-59290188 Msa0691290:CDS
CAATTTGCTTATTCTTGGAA+CGG 0.517847 4_4:+59290389 None:intergenic
GGTGCCTTGCCACCACCCAT+AGG 0.517893 4_4:+59290130 None:intergenic
GAACGGAGCGTGAGGATTCG+AGG 0.522727 4_4:+59295854 None:intergenic
GGTGGTGGCAAGGCACCAAA+GGG 0.525237 4_4:-59290124 Msa0691290:CDS
GGAAATAACTGAAAATAGGT+TGG 0.525268 4_4:-59290072 Msa0691290:exon
TTGTGCTACAGGTATGAAGA+TGG 0.526372 4_4:-59294157 Msa0691290:intron
AATGGATATTGATGAGTTGA+AGG 0.527096 4_4:-59290938 Msa0691290:CDS
TCTTACTTACCTTCTGGGAT+GGG 0.527220 4_4:-59292448 Msa0691290:intron
ATGGGTAAGGGAGGCAAAAG+AGG 0.527531 4_4:-59290229 Msa0691290:CDS
ATCGACGGGAACACGTTGAA+CGG 0.527840 4_4:+59295792 None:intergenic
TGTTTGGACAGATACTCCTC+TGG 0.528273 4_4:-59294095 Msa0691290:CDS
TGTATTGCAGTTGTTTGAGA+AGG 0.530032 4_4:-59294737 Msa0691290:intron
TGATACTAGACCTGCAAAGA+AGG 0.532383 4_4:-59290512 Msa0691290:CDS
TGGCAGGGCTCCGAGTGGCA+AGG 0.532689 4_4:-59290155 Msa0691290:CDS
GCGACTTGCATCCAACCACC+AGG 0.532806 4_4:+59295814 None:intergenic
GCAAACCTTCATAGAAGCAA+GGG 0.534739 4_4:+59293127 None:intergenic
GTGCCACTTACAGATGGTAC+AGG 0.535287 4_4:-59291060 Msa0691290:CDS
CAAAAGAGGTTCCAAGGCAA+AGG 0.540250 4_4:-59290215 Msa0691290:CDS
TATTTAGTAATTGATTGTAC+CGG 0.542464 4_4:-59289865 Msa0691290:three_prime_UTR
CATGATGGTTCTCCCAATGT+TGG 0.542545 4_4:-59295622 Msa0691290:CDS
TGGCTGATCTGATATAGCAT+TGG 0.544299 4_4:+59290423 None:intergenic
AAGGGTGGCAAGGCACCAAA+GGG 0.550438 4_4:-59290196 Msa0691290:CDS
GAAACCACTTGGGCAATCCC+TGG 0.550706 4_4:+59290620 None:intergenic
GCTCCGATTAAACCACTTCG+AGG 0.551749 4_4:-59295745 Msa0691290:CDS
AGGCACCAAAGGGCAGCAGG+GGG 0.552421 4_4:-59290114 Msa0691290:CDS
AAGATGGAAACACAACTTTG+AGG 0.553591 4_4:-59294141 Msa0691290:CDS
AGTTAAGCCTGTCACGAAAG+AGG 0.553825 4_4:-59290569 Msa0691290:CDS
ATATAGCATTGGCCTTCTTG+CGG 0.554799 4_4:+59290434 None:intergenic
GAGTATGTAGTTGCGAAGAA+AGG 0.555023 4_4:-59290325 Msa0691290:CDS
AGCAAACCTTCATAGAAGCA+AGG 0.555592 4_4:+59293126 None:intergenic
TAAGGCACCAAAGGGTGGCA+GGG 0.556224 4_4:-59290170 Msa0691290:CDS
TGTCTTTGCTGAAGCTGTAG+AGG 0.557186 4_4:-59290995 Msa0691290:CDS
GGCAAGGCTCCTATGGGTGG+TGG 0.559489 4_4:-59290139 Msa0691290:CDS
TTCCAAGGCAAAGGGTGGCA+AGG 0.561704 4_4:-59290206 Msa0691290:CDS
AAGGGTGGTAAGGCACCAAA+GGG 0.563654 4_4:-59290178 Msa0691290:CDS
ATAGCAATCGCGCCTCGAAG+TGG 0.563885 4_4:+59295733 None:intergenic
TGAAGGTGGTGAGGGTGAAG+TGG 0.564875 4_4:-59292239 Msa0691290:CDS
CTCATCAGATGACGAATCAT+CGG 0.565900 4_4:+59290759 None:intergenic
GATGCGAGGAAAAGTGGTAT+GGG 0.568839 4_4:-59290247 Msa0691290:CDS
GGCCCTGTACCATCTGTAAG+TGG 0.570155 4_4:+59291057 None:intergenic
AAAGGTGTCCAAGTTAAGGC+TGG 0.572799 4_4:-59290307 Msa0691290:CDS
AAAGGGTGGTAAGGCACCAA+AGG 0.574446 4_4:-59290179 Msa0691290:CDS
GATCTCTGTGCCGCCCCTGG+TGG 0.575014 4_4:-59295829 Msa0691290:CDS
AAAAGAGGTTCCAAGGCAAA+GGG 0.578732 4_4:-59290214 Msa0691290:CDS
TCCTCATCCAGAAACCACTT+GGG 0.580501 4_4:+59290610 None:intergenic
GATGGTTCTCCCAATGTTGG+TGG 0.580953 4_4:-59295619 Msa0691290:CDS
GAGATCGAGAACGGAGCGTG+AGG 0.581272 4_4:+59295846 None:intergenic
GTTTCCATGATGCACGAGAA+CGG 0.581399 4_4:+59295905 None:intergenic
TCCGATAACGAGATGATCGA+CGG 0.583188 4_4:+59295777 None:intergenic
GCAGATTCAGAACGACTAGC+CGG 0.583189 4_4:+59294697 None:intergenic
ACCTGCTACTACAGCTGAGG+TGG 0.584451 4_4:-59293628 Msa0691290:CDS
GGGAGGCAAAAGAGGTTCCA+AGG 0.587727 4_4:-59290221 Msa0691290:CDS
ATGACCAGGGATTGCCCAAG+TGG 0.588076 4_4:-59290624 Msa0691290:CDS
AGAGGAAGGAGGCTTTGAGA+AGG 0.588884 4_4:-59290977 Msa0691290:CDS
CCGATAACGAGATGATCGAC+GGG 0.588987 4_4:+59295778 None:intergenic
TGTGGTGTGGTGTATGAAGA+AGG 0.590485 4_4:-59295378 Msa0691290:intron
TTGATGGTGCCACTTACAGA+TGG 0.590708 4_4:-59291066 Msa0691290:CDS
TGCGAGGATCAATCTTAGCA+GGG 0.591124 4_4:+59294641 None:intergenic
AAAAGTGGTATGGGTAAGGG+AGG 0.594301 4_4:-59290238 Msa0691290:CDS
TCATCTGAATCATATTTGGA+CGG 0.595641 4_4:+59291117 None:intergenic
GATGAGTCGGAGGATGATGT+TGG 0.597553 4_4:-59290742 Msa0691290:CDS
CAGATATGATGAACAAATGG+AGG 0.598813 4_4:-59291808 Msa0691290:CDS
GCTGAAGCTGTAGAGGAAGG+AGG 0.599542 4_4:-59290988 Msa0691290:CDS
GGCGGCACAGAGATCGAGAA+CGG 0.599834 4_4:+59295837 None:intergenic
AGTGGCAAGGCTCCTATGGG+TGG 0.601416 4_4:-59290142 Msa0691290:CDS
TTCTGCTCAACCAATAGCCA+AGG 0.602304 4_4:-59294590 Msa0691290:intron
TTGCATCCAACCACCAGGGG+CGG 0.603549 4_4:+59295819 None:intergenic
TACTTGAACAAGCTTATGAG+CGG 0.604310 4_4:-59291782 Msa0691290:CDS
AAGCAAGGGAAAACAACTCA+TGG 0.604688 4_4:+59293141 None:intergenic
GGTGGTAAGGCACCAAAGGG+TGG 0.605911 4_4:-59290175 Msa0691290:CDS
GCAGTTGTTTGAGAAGGTTG+AGG 0.607438 4_4:-59294731 Msa0691290:intron
GTTGTTTGAGAAGGTTGAGG+TGG 0.608440 4_4:-59294728 Msa0691290:CDS
GTCCAAGTTAAGGCTGGTAA+GGG 0.608786 4_4:-59290301 Msa0691290:CDS
AAGAGGAGATCACAAATATG+TGG 0.610175 4_4:-59291029 Msa0691290:CDS
AAGTACATGTTTGATGACCA+GGG 0.610744 4_4:-59290637 Msa0691290:CDS
GTTGACACCACTGACTATGA+AGG 0.612962 4_4:-59292256 Msa0691290:CDS
TCATGACCTAACAACTGAAG+AGG 0.614244 4_4:-59294011 Msa0691290:intron
TGGAAACACAACTTTGAGGA+AGG 0.614292 4_4:-59294137 Msa0691290:CDS
GGTGGCAAGGCACCAAAGGG+TGG 0.614380 4_4:-59290193 Msa0691290:CDS
GATTGAGAAAGTCCGCAAGA+AGG 0.615324 4_4:-59290446 Msa0691290:CDS
AACAAAATACCCATCCCAGA+AGG 0.620580 4_4:+59292439 None:intergenic
GGAGGAACTGACAAATGCAA+TGG 0.622437 4_4:-59293556 Msa0691290:CDS
TTTGCTGAAGCTGTAGAGGA+AGG 0.623225 4_4:-59290991 Msa0691290:CDS
AAGCAAAAGAGGCATCGTGA+CGG 0.630705 4_4:-59294458 Msa0691290:CDS
CACTGACTATGAAGGTGGTG+AGG 0.631148 4_4:-59292248 Msa0691290:CDS
GACTTGCATCCAACCACCAG+GGG 0.641278 4_4:+59295816 None:intergenic
TACTAGACCTGCAAAGAAGG+TGG 0.643500 4_4:-59290509 Msa0691290:CDS
GAAAGCTACAGGGATGCAAG+TGG 0.643829 4_4:-59293186 Msa0691290:CDS
TGATTCGTCATCTGATGAGT+CGG 0.644842 4_4:-59290755 Msa0691290:CDS
AGAGGTTCCAAGGCAAAGGG+TGG 0.646378 4_4:-59290211 Msa0691290:CDS
CTCACCACCTTCATAGTCAG+TGG 0.647399 4_4:+59292249 None:intergenic
TGCCACTTACAGATGGTACA+GGG 0.648540 4_4:-59291059 Msa0691290:CDS
CTTATGCTAAGAAGATGCTG+AGG 0.650492 4_4:-59290699 Msa0691290:CDS
GGAAAATGAGCATGATGTGG+TGG 0.650915 4_4:-59293607 Msa0691290:CDS
GTCGCAGGATTACAATTCTG+TGG 0.652491 4_4:-59295396 Msa0691290:CDS
CGACTTGCATCCAACCACCA+GGG 0.654008 4_4:+59295815 None:intergenic
AGGATTACAATTCTGTGGTG+TGG 0.654132 4_4:-59295391 Msa0691290:CDS
ACAAGGCGCGGAAAGCTACA+GGG 0.654275 4_4:-59293196 Msa0691290:CDS
TACTACTTAGCCAAAGAACA+CGG 0.656107 4_4:-59295931 Msa0691290:CDS
TTCGTCATCTGATGAGTCGG+AGG 0.656144 4_4:-59290752 Msa0691290:CDS
GAGAATGATGAAAACAAAGG+TGG 0.658526 4_4:-59292208 Msa0691290:CDS
TAGAATACTCAACGAAATGG+AGG 0.659661 4_4:-59293574 Msa0691290:CDS
GAATTGGTGAAGAAGAGAAG+AGG 0.664678 4_4:+59296006 None:intergenic
AGGTGGCTGAGGCCAAAGCA+CGG 0.664696 4_4:-59290492 Msa0691290:CDS
GGAAGAAGCGTGTTGCAATG+AGG 0.668768 4_4:-59290471 Msa0691290:CDS
GCAGGATGAAGAGTGATGCG+AGG 0.670277 4_4:-59290261 Msa0691290:CDS
GCGAGGATCAATCTTAGCAG+GGG 0.672582 4_4:+59294642 None:intergenic
ACTGACTATGAAGGTGGTGA+GGG 0.672668 4_4:-59292247 Msa0691290:CDS
GATTCAGAACGACTAGCCGG+TGG 0.675718 4_4:+59294700 None:intergenic
TGGTACAGGGCCCACCCAAG+AGG 0.676289 4_4:-59291046 Msa0691290:CDS
CGAACCTGCTACTACAGCTG+AGG 0.683122 4_4:-59293631 Msa0691290:CDS
TGACAGGCTTAACTGGTACA+CGG 0.694707 4_4:+59290578 None:intergenic
TGTTTGATATCAAGAATGCG+AGG 0.697910 4_4:+59294625 None:intergenic
AAGGGTGGCAGGGCTCCGAG+TGG 0.701713 4_4:-59290160 Msa0691290:CDS
AGTGAGAATGATGAAAACAA+AGG 0.718737 4_4:-59292211 Msa0691290:CDS
GACACCACTGACTATGAAGG+TGG 0.729517 4_4:-59292253 Msa0691290:CDS
GGTGGAAAATGAGCATGATG+TGG 0.733532 4_4:-59293610 Msa0691290:CDS
ACTGAACCAAGAATCTCCAG+AGG 0.740370 4_4:+59294079 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTACTATATTTTATCTT+GGG + chr4_4:59290848-59290867 None:intergenic 10.0%
!!! TTTTTCTTTTATTTTATATC+TGG - chr4_4:59292082-59292101 Msa0691290:intron 10.0%
!!! TTTTCTTTTATTTTATATCT+GGG - chr4_4:59292083-59292102 Msa0691290:intron 10.0%
!!! CATATTTAATTTGAAGTTAA+AGG + chr4_4:59290702-59290721 None:intergenic 15.0%
!!! CAATTTACTATATTTTATCT+TGG + chr4_4:59290849-59290868 None:intergenic 15.0%
!! TTAAAAAAAACAATTAACCT+TGG + chr4_4:59291245-59291264 None:intergenic 15.0%
!!! TTTCTTTTATTTTATATCTG+GGG - chr4_4:59292084-59292103 Msa0691290:intron 15.0%
!! TAATACTTCAATTGTTAATA+AGG + chr4_4:59292813-59292832 None:intergenic 15.0%
!! TTAAATAAAGTAATATTGTG+AGG - chr4_4:59293829-59293848 Msa0691290:intron 15.0%
!! TAAATAAAGTAATATTGTGA+GGG - chr4_4:59293830-59293849 Msa0691290:intron 15.0%
!! AAAAAAAAAAAAGAACAAGA+GGG + chr4_4:59293885-59293904 None:intergenic 15.0%
!! AAAGATCAAAGAAAATAAAA+TGG - chr4_4:59294949-59294968 Msa0691290:intron 15.0%
!!! TTGTATGTTTATTTTTCTTT+TGG - chr4_4:59295810-59295829 Msa0691290:CDS 15.0%
!! TTATAGCACAAATGATAAAA+GGG - chr4_4:59290550-59290569 Msa0691290:CDS 20.0%
!! CATAGACTAAAATTGAAAAT+AGG + chr4_4:59290613-59290632 None:intergenic 20.0%
!! TTAAAAAAGAAGTTGAAACA+CGG - chr4_4:59290775-59290794 Msa0691290:CDS 20.0%
!!! TAATTTTTTTTAGTAGTCTG+AGG - chr4_4:59291854-59291873 Msa0691290:intron 20.0%
!!! AATTTTTTTTAGTAGTCTGA+GGG - chr4_4:59291855-59291874 Msa0691290:intron 20.0%
!!! AAAAAGGAATAAACATTTTC+AGG + chr4_4:59292064-59292083 None:intergenic 20.0%
!!! TTCTTTTATTTTATATCTGG+GGG - chr4_4:59292085-59292104 Msa0691290:intron 20.0%
!! CAACATTGTTAATATTTAGT+TGG - chr4_4:59292401-59292420 Msa0691290:intron 20.0%
!! ATTTAGTTGGAAACTATAAT+AGG - chr4_4:59292414-59292433 Msa0691290:intron 20.0%
!! TTTATTACTCATCTTTAGAT+AGG - chr4_4:59293459-59293478 Msa0691290:intron 20.0%
!! ACTATTTATTAATCGTTTCT+TGG - chr4_4:59293495-59293514 Msa0691290:intron 20.0%
!! CAAAAAAAAAAAAGAACAAG+AGG + chr4_4:59293886-59293905 None:intergenic 20.0%
!!! TTTCATAAATGGACTATAAA+TGG + chr4_4:59294192-59294211 None:intergenic 20.0%
!!! AGATAATAGTTTTCAAGAAT+CGG + chr4_4:59294372-59294391 None:intergenic 20.0%
!! TCATATTAAATATTCGACAT+AGG + chr4_4:59294460-59294479 None:intergenic 20.0%
!! ATATTTAATATGAAGCTTAC+CGG - chr4_4:59294467-59294486 Msa0691290:CDS 20.0%
!! TGAAATCATGTTTATATTAC+CGG + chr4_4:59294489-59294508 None:intergenic 20.0%
!! ATATAAACATGATTTCATGT+TGG - chr4_4:59294492-59294511 Msa0691290:intron 20.0%
!!! TAAATATTTCTTTTTGCACA+CGG + chr4_4:59294625-59294644 None:intergenic 20.0%
!!! AAATCAATCAAATTTGGAAT+AGG + chr4_4:59295907-59295926 None:intergenic 20.0%
!! TATTTAGTAATTGATTGTAC+CGG - chr4_4:59295950-59295969 Msa0691290:CDS 20.0%
! AGGAAAATCATGAATGAAAA+TGG - chr4_4:59290145-59290164 Msa0691290:CDS 25.0%
! TTTGATGTTATTCTTCATGA+TGG - chr4_4:59290178-59290197 Msa0691290:CDS 25.0%
! GCAAAATTATGTTAAAACCT+TGG + chr4_4:59290317-59290336 None:intergenic 25.0%
!!! TCTGTTTGTGTTTTTTAATC+TGG - chr4_4:59290490-59290509 Msa0691290:CDS 25.0%
!!! TGTGTTTTTTAATCTGGTTT+TGG - chr4_4:59290496-59290515 Msa0691290:CDS 25.0%
! CTTATAGCACAAATGATAAA+AGG - chr4_4:59290549-59290568 Msa0691290:CDS 25.0%
! AGGAAGTTTGTATATTTAGA+GGG + chr4_4:59290593-59290612 None:intergenic 25.0%
! TAGGAAGTTTGTATATTTAG+AGG + chr4_4:59290594-59290613 None:intergenic 25.0%
! AAAGGCAAATTAATAGAGAT+TGG + chr4_4:59290684-59290703 None:intergenic 25.0%
! TAAAAAAGAAGTTGAAACAC+GGG - chr4_4:59290776-59290795 Msa0691290:CDS 25.0%
! AGTGATAGTTGTATATTTAG+AGG - chr4_4:59290805-59290824 Msa0691290:CDS 25.0%
! GTGATAGTTGTATATTTAGA+GGG - chr4_4:59290806-59290825 Msa0691290:CDS 25.0%
! TGAACAATTGTAATACTGTT+TGG + chr4_4:59290960-59290979 None:intergenic 25.0%
! TTGAAATTTCTTTGATGTTG+TGG - chr4_4:59291043-59291062 Msa0691290:CDS 25.0%
!! ATCTGCTGAGATATATATTT+TGG - chr4_4:59291135-59291154 Msa0691290:CDS 25.0%
!! TCTGCTGAGATATATATTTT+GGG - chr4_4:59291136-59291155 Msa0691290:CDS 25.0%
!! TGATATCAAACATCTTTTTG+AGG - chr4_4:59291201-59291220 Msa0691290:intron 25.0%
!!! CTCTTTTCATTTGATTTACT+TGG - chr4_4:59291290-59291309 Msa0691290:intron 25.0%
! AAATCCAAAACACAATAATG+AGG + chr4_4:59291390-59291409 None:intergenic 25.0%
!!! TTCTGCTTGTTATTTTGAAA+TGG - chr4_4:59291451-59291470 Msa0691290:intron 25.0%
! TTTGCAAAAGAAACTAATTG+TGG - chr4_4:59291516-59291535 Msa0691290:intron 25.0%
!! TTTAACTGCTTATTTAGAGT+AGG - chr4_4:59291577-59291596 Msa0691290:intron 25.0%
!! TTAACTGCTTATTTAGAGTA+GGG - chr4_4:59291578-59291597 Msa0691290:intron 25.0%
! GTTGTAACTGCTTAATTATA+TGG - chr4_4:59291609-59291628 Msa0691290:intron 25.0%
!! TTATAACTATTTTGTGCTAC+AGG - chr4_4:59291647-59291666 Msa0691290:intron 25.0%
!! GATAATAAAAGCTTTGATTG+TGG - chr4_4:59291902-59291921 Msa0691290:intron 25.0%
!! CTGTTTTATAATCCTTTTTG+TGG - chr4_4:59292550-59292569 Msa0691290:intron 25.0%
! AAAAAAATATTGTGCGCTTT+CGG + chr4_4:59292867-59292886 None:intergenic 25.0%
!!! AAAGCGCACAATATTTTTTT+GGG - chr4_4:59292867-59292886 Msa0691290:intron 25.0%
! TAAATTTATATGCTTGAAGC+AGG - chr4_4:59292916-59292935 Msa0691290:intron 25.0%
! ACACATACTTGAAAAAAAGT+AGG - chr4_4:59293158-59293177 Msa0691290:CDS 25.0%
! AAGATAAGAAGTCATAGTAA+TGG + chr4_4:59293299-59293318 None:intergenic 25.0%
! AGTAAGATATACTCTCTTTA+TGG + chr4_4:59293354-59293373 None:intergenic 25.0%
! ATGTGTCTATCTTTCATAAA+TGG + chr4_4:59294203-59294222 None:intergenic 25.0%
! TATCACCTTATCTCATAAAT+GGG - chr4_4:59294271-59294290 Msa0691290:intron 25.0%
!!! GATAATAGTTTTCAAGAATC+GGG + chr4_4:59294371-59294390 None:intergenic 25.0%
! TTAAAGGAAACTGGAATTAA+AGG + chr4_4:59294413-59294432 None:intergenic 25.0%
! ATAGGATATATTTGAACGAA+AGG + chr4_4:59294442-59294461 None:intergenic 25.0%
! ATCTTCATCTGAATCATATT+TGG + chr4_4:59294705-59294724 None:intergenic 25.0%
! AATCTCAAAATCCATTTCAT+TGG + chr4_4:59295014-59295033 None:intergenic 25.0%
! TAAACATACAAAATTTGCCT+TGG + chr4_4:59295801-59295820 None:intergenic 25.0%
! GTTAGAAATGGTTAATGATA+TGG - chr4_4:59295988-59296007 Msa0691290:exon 25.0%
!!! TGGTTAATGATATGGTTTTA+TGG - chr4_4:59295996-59296015 Msa0691290:exon 25.0%
!!! GGTTAATGATATGGTTTTAT+GGG - chr4_4:59295997-59296016 Msa0691290:exon 25.0%
!!! TATGGTTTTATGGGTAATAT+TGG - chr4_4:59296006-59296025 Msa0691290:five_prime_UTR 25.0%
TTCACCAATTCATCAACAAT+GGG - chr4_4:59289821-59289840 Msa0691290:three_prime_UTR 30.0%
! TTTACCCATTGTTGATGAAT+TGG + chr4_4:59289828-59289847 None:intergenic 30.0%
CTAACTCTAGATTTACATTC+AGG + chr4_4:59290127-59290146 None:intergenic 30.0%
! CTGAATGTAAATCTAGAGTT+AGG - chr4_4:59290125-59290144 Msa0691290:CDS 30.0%
!! CTTTTACTTTGTTGTGTGAT+AGG - chr4_4:59290389-59290408 Msa0691290:CDS 30.0%
AAAAAAGAAGTTGAAACACG+GGG - chr4_4:59290777-59290796 Msa0691290:CDS 30.0%
TTTCATAAGCTAAGCTATCT+TGG - chr4_4:59290869-59290888 Msa0691290:CDS 30.0%
AAATTTCTTTGATGTTGTGG+TGG - chr4_4:59291046-59291065 Msa0691290:CDS 30.0%
! CTGCTGAGATATATATTTTG+GGG - chr4_4:59291137-59291156 Msa0691290:CDS 30.0%
AAACAATTAACCTTGGCTAT+TGG + chr4_4:59291238-59291257 None:intergenic 30.0%
TTGGAAACAATAAGCAAAAG+AGG - chr4_4:59291346-59291365 Msa0691290:intron 30.0%
! ACTACCTCATTATTGTGTTT+TGG - chr4_4:59291383-59291402 Msa0691290:intron 30.0%
! GGATTTTACATTGTTTCGTT+CGG - chr4_4:59291404-59291423 Msa0691290:intron 30.0%
! GATTTTACATTGTTTCGTTC+GGG - chr4_4:59291405-59291424 Msa0691290:intron 30.0%
TTTACGCATTCTTTCTCAAA+TGG - chr4_4:59291428-59291447 Msa0691290:intron 30.0%
! AATGTTATGATGTTTGGAGT+AGG - chr4_4:59291541-59291560 Msa0691290:intron 30.0%
! ATGTTATGATGTTTGGAGTA+GGG - chr4_4:59291542-59291561 Msa0691290:intron 30.0%
CTAAATAAGCAGTTAAACTG+CGG + chr4_4:59291574-59291593 None:intergenic 30.0%
AAAATACCTCTTCAGTTGTT+AGG + chr4_4:59291813-59291832 None:intergenic 30.0%
!!! CAACTGAAGAGGTATTTTTT+TGG - chr4_4:59291815-59291834 Msa0691290:intron 30.0%
AAAAATAGTGCCAGAAATGA+CGG + chr4_4:59292028-59292047 None:intergenic 30.0%
TGATAGAATACTCAACGAAA+TGG - chr4_4:59292238-59292257 Msa0691290:CDS 30.0%
!! CATGATTTTAGTCCCAAAAA+TGG - chr4_4:59292458-59292477 Msa0691290:CDS 30.0%
!!! TTTACCCATTTTGGTTTTAC+AGG - chr4_4:59292596-59292615 Msa0691290:intron 30.0%
TTGTCCTGTAAAACCAAAAT+GGG + chr4_4:59292603-59292622 None:intergenic 30.0%
TACTCGTTATAAATGCATAG+TGG - chr4_4:59292831-59292850 Msa0691290:intron 30.0%
!!! GAAAGCGCACAATATTTTTT+TGG - chr4_4:59292866-59292885 Msa0691290:intron 30.0%
!!! AAGCGCACAATATTTTTTTG+GGG - chr4_4:59292868-59292887 Msa0691290:intron 30.0%
TAACAAAGTGAACAAGAGTT+CGG + chr4_4:59292959-59292978 None:intergenic 30.0%
ACTCTTGTTCACTTTGTTAA+AGG - chr4_4:59292960-59292979 Msa0691290:intron 30.0%
TAAAGGAGATATGTACATAG+AGG - chr4_4:59292977-59292996 Msa0691290:intron 30.0%
TTAGATGGTCACAATCATTT+GGG - chr4_4:59293117-59293136 Msa0691290:intron 30.0%
! GGATTAGTAGGAAAATACTT+GGG + chr4_4:59293278-59293297 None:intergenic 30.0%
!! TGGATTAGTAGGAAAATACT+TGG + chr4_4:59293279-59293298 None:intergenic 30.0%
!! AGTCATAGTAATGGATTAGT+AGG + chr4_4:59293290-59293309 None:intergenic 30.0%
! TATCTTCGCATATGTTCTTT+TGG - chr4_4:59293313-59293332 Msa0691290:intron 30.0%
AGTATATCTTACTTACCTTC+TGG - chr4_4:59293361-59293380 Msa0691290:intron 30.0%
GTATATCTTACTTACCTTCT+GGG - chr4_4:59293362-59293381 Msa0691290:intron 30.0%
AGTGAGAATGATGAAAACAA+AGG - chr4_4:59293604-59293623 Msa0691290:CDS 30.0%
TAAAGTAATATTGTGAGGGA+AGG - chr4_4:59293834-59293853 Msa0691290:intron 30.0%
GAACAAATGTGATTGAAGAA+TGG + chr4_4:59293920-59293939 None:intergenic 30.0%
AACCAGATATGATGAACAAA+TGG - chr4_4:59294004-59294023 Msa0691290:intron 30.0%
GACTATAAATGGAACAAATC+CGG + chr4_4:59294181-59294200 None:intergenic 30.0%
CTATCACCTTATCTCATAAA+TGG - chr4_4:59294270-59294289 Msa0691290:intron 30.0%
TATTGCCCATTTATGAGATA+AGG + chr4_4:59294279-59294298 None:intergenic 30.0%
TCTCATAAATGGGCAATAAT+TGG - chr4_4:59294281-59294300 Msa0691290:intron 30.0%
TGAACTCTAATTATACCTTC+CGG - chr4_4:59294312-59294331 Msa0691290:intron 30.0%
GAAACTGGAATTAAAGGAAT+GGG + chr4_4:59294407-59294426 None:intergenic 30.0%
AGGAAGAAATTAAAGGAAAC+TGG + chr4_4:59294422-59294441 None:intergenic 30.0%
GAACGAAAGGAAGAAATTAA+AGG + chr4_4:59294429-59294448 None:intergenic 30.0%
TGATTTCATGTTGGTATTGT+TGG - chr4_4:59294501-59294520 Msa0691290:intron 30.0%
ACAAAAATACCAGTCCTAAA+GGG + chr4_4:59294545-59294564 None:intergenic 30.0%
! TTTTGTCATGTCAAATGTGT+TGG - chr4_4:59294559-59294578 Msa0691290:intron 30.0%
TTGGTTATTGTTGAGAATTG+TGG - chr4_4:59294578-59294597 Msa0691290:intron 30.0%
! TTTTGCACACGGAATAAAAA+AGG + chr4_4:59294614-59294633 None:intergenic 30.0%
! ACACATGTTCTATTACCTTT+TGG - chr4_4:59294644-59294663 Msa0691290:CDS 30.0%
TCATCTGAATCATATTTGGA+CGG + chr4_4:59294701-59294720 None:intergenic 30.0%
ATATGATTCAGATGAAGATC+AGG - chr4_4:59294706-59294725 Msa0691290:CDS 30.0%
! AATGGATATTGATGAGTTGA+AGG - chr4_4:59294877-59294896 Msa0691290:intron 30.0%
! TCTTTGATCTTTTCAGCAAT+AGG + chr4_4:59294941-59294960 None:intergenic 30.0%
! ATCTAAAGCATCCAATGAAA+TGG - chr4_4:59295000-59295019 Msa0691290:intron 30.0%
! CAATTTGCTTATTCTTGGAA+CGG + chr4_4:59295429-59295448 None:intergenic 30.0%
ATAAAAACGCTGTTCCAAAA+AGG - chr4_4:59295458-59295477 Msa0691290:intron 30.0%
GGAAGGAAATAACTGAAAAT+AGG - chr4_4:59295739-59295758 Msa0691290:CDS 30.0%
GGAAATAACTGAAAATAGGT+TGG - chr4_4:59295743-59295762 Msa0691290:CDS 30.0%
! ATGAGTTTTCTTACTTTCCA+AGG - chr4_4:59295781-59295800 Msa0691290:CDS 30.0%
!!! GCTGTTTTGTTTTTCATTGA+AGG - chr4_4:59295877-59295896 Msa0691290:CDS 30.0%
CAGACGAAATCAATCAAATT+TGG + chr4_4:59295913-59295932 None:intergenic 30.0%
TTAGCAGAAACAGTTAGAAA+TGG - chr4_4:59295976-59295995 Msa0691290:CDS 30.0%
CTTCACCAATTCATCAACAA+TGG - chr4_4:59289820-59289839 Msa0691290:three_prime_UTR 35.0%
ATGGGTAAAGCAAAAGCAAA+AGG - chr4_4:59289839-59289858 Msa0691290:three_prime_UTR 35.0%
TACTACTTAGCCAAAGAACA+CGG - chr4_4:59289884-59289903 Msa0691290:three_prime_UTR 35.0%
!!! TACTCAGTTTTTAGCTCCTA+AGG - chr4_4:59290279-59290298 Msa0691290:CDS 35.0%
!!! ACTCAGTTTTTAGCTCCTAA+GGG - chr4_4:59290280-59290299 Msa0691290:CDS 35.0%
! TTGGTAACAAAAGTTCCCTT+AGG + chr4_4:59290298-59290317 None:intergenic 35.0%
! TAAGGGAACTTTTGTTACCA+AGG - chr4_4:59290297-59290316 Msa0691290:CDS 35.0%
! TTGTTGTGTGATAGGTTTTC+AGG - chr4_4:59290397-59290416 Msa0691290:CDS 35.0%
!! ATGCCACAAGTTGTTTTCAT+AGG - chr4_4:59290929-59290948 Msa0691290:CDS 35.0%
GAACCTATGAAAACAACTTG+TGG + chr4_4:59290935-59290954 None:intergenic 35.0%
TCCACAATGAATTCAACAGA+GGG + chr4_4:59291021-59291040 None:intergenic 35.0%
ATCCACAATGAATTCAACAG+AGG + chr4_4:59291022-59291041 None:intergenic 35.0%
TGTATTGCAGTTGTTTGAGA+AGG - chr4_4:59291078-59291097 Msa0691290:CDS 35.0%
TGTTTGATATCAAGAATGCG+AGG + chr4_4:59291193-59291212 None:intergenic 35.0%
TGTTGAATCGATAATGCAGA+TGG - chr4_4:59291314-59291333 Msa0691290:intron 35.0%
GTGGAGAATGTTATGATGTT+TGG - chr4_4:59291535-59291554 Msa0691290:intron 35.0%
AAGATGGAAACACAACTTTG+AGG - chr4_4:59291674-59291693 Msa0691290:intron 35.0%
! CTTCAGCTGCAAATTTTGTT+TGG - chr4_4:59291704-59291723 Msa0691290:CDS 35.0%
!! TTTTTAGTAGTCTGAGGGAT+TGG - chr4_4:59291860-59291879 Msa0691290:intron 35.0%
AATCTCTCTGTGAAGATTTG+AGG - chr4_4:59291940-59291959 Msa0691290:intron 35.0%
ATCTCTCTGTGAAGATTTGA+GGG - chr4_4:59291941-59291960 Msa0691290:intron 35.0%
! TGTGAAGATTTGAGGGTTTT+GGG - chr4_4:59291948-59291967 Msa0691290:intron 35.0%
GGTAATTATGTTGTATCTGC+TGG - chr4_4:59292106-59292125 Msa0691290:intron 35.0%
TAGAATACTCAACGAAATGG+AGG - chr4_4:59292241-59292260 Msa0691290:CDS 35.0%
!!! TTTTTTCACGCTTCTTCTTG+CGG + chr4_4:59292286-59292305 None:intergenic 35.0%
TCTATCAAAAAGAAGAGCCA+AGG - chr4_4:59292310-59292329 Msa0691290:intron 35.0%
AACTAAGAAGCTACAAACCT+TGG + chr4_4:59292330-59292349 None:intergenic 35.0%
TTAGTTACCACTGAGTACTT+TGG - chr4_4:59292344-59292363 Msa0691290:intron 35.0%
TAGTTACCACTGAGTACTTT+GGG - chr4_4:59292345-59292364 Msa0691290:intron 35.0%
TAGTCCCAAAAATGGTTTCA+AGG - chr4_4:59292466-59292485 Msa0691290:CDS 35.0%
!! CATGCCTTGAAACCATTTTT+GGG + chr4_4:59292473-59292492 None:intergenic 35.0%
! TCATGCCTTGAAACCATTTT+TGG + chr4_4:59292474-59292493 None:intergenic 35.0%
GTTAATCCTTCCATGTATCA+TGG - chr4_4:59292511-59292530 Msa0691290:intron 35.0%
CTTGTCCTGTAAAACCAAAA+TGG + chr4_4:59292604-59292623 None:intergenic 35.0%
!!! CATTTTGGTTTTACAGGACA+AGG - chr4_4:59292602-59292621 Msa0691290:intron 35.0%
TTGAGATGGAGGAAGTAAAA+AGG + chr4_4:59292718-59292737 None:intergenic 35.0%
! AAACAGCACTTGATTTGAGA+TGG + chr4_4:59292732-59292751 None:intergenic 35.0%
!!! AGCGCACAATATTTTTTTGG+GGG - chr4_4:59292869-59292888 Msa0691290:intron 35.0%
GAAACATTCACAGTAAACTC+AGG + chr4_4:59293021-59293040 None:intergenic 35.0%
! TTCTGAGAGTTTACTGTGAT+AGG - chr4_4:59293038-59293057 Msa0691290:intron 35.0%
GATAGGAGATCTACTTTGAT+TGG - chr4_4:59293055-59293074 Msa0691290:intron 35.0%
CTTAGATGGTCACAATCATT+TGG - chr4_4:59293116-59293135 Msa0691290:intron 35.0%
! CTTGGGTTGTTACAATCATT+TGG + chr4_4:59293261-59293280 None:intergenic 35.0%
CTTTATGGTTTCCTTCTGAA+GGG + chr4_4:59293339-59293358 None:intergenic 35.0%
TCTTTATGGTTTCCTTCTGA+AGG + chr4_4:59293340-59293359 None:intergenic 35.0%
GTTCTGTCACTATATCTTCA+TGG - chr4_4:59293425-59293444 Msa0691290:intron 35.0%
GAGAATGATGAAAACAAAGG+TGG - chr4_4:59293607-59293626 Msa0691290:CDS 35.0%
ATTCTGACGAAGAACGTAAA+AGG - chr4_4:59293656-59293675 Msa0691290:CDS 35.0%
AGAACGTAAAAGGTGATTGA+CGG - chr4_4:59293666-59293685 Msa0691290:CDS 35.0%
CTTGTGCATAAGATATACAC+TGG + chr4_4:59293762-59293781 None:intergenic 35.0%
AACAGAATAAAACAGTGGAG+AGG + chr4_4:59293946-59293965 None:intergenic 35.0%
!! TCTCCACTGTTTTATTCTGT+TGG - chr4_4:59293945-59293964 Msa0691290:intron 35.0%
AGACCAACAGAATAAAACAG+TGG + chr4_4:59293951-59293970 None:intergenic 35.0%
!! TTCTGTTGGTCTTTCATAAC+TGG - chr4_4:59293959-59293978 Msa0691290:intron 35.0%
TCATAACTGGTGAATCTAAC+TGG - chr4_4:59293972-59293991 Msa0691290:intron 35.0%
CTCCATTTGTTCATCATATC+TGG + chr4_4:59294009-59294028 None:intergenic 35.0%
CAGATATGATGAACAAATGG+AGG - chr4_4:59294007-59294026 Msa0691290:intron 35.0%
TACTTGAACAAGCTTATGAG+CGG - chr4_4:59294033-59294052 Msa0691290:CDS 35.0%
TGAGCGGTTTGTGATAAAAA+AGG - chr4_4:59294049-59294068 Msa0691290:CDS 35.0%
CGGTTTGTGATAAAAAAGGA+AGG - chr4_4:59294053-59294072 Msa0691290:CDS 35.0%
GCGATAGATTAGTGATTTAG+TGG - chr4_4:59294223-59294242 Msa0691290:intron 35.0%
TCTAATTATACCTTCCGGTT+TGG - chr4_4:59294317-59294336 Msa0691290:intron 35.0%
CTAATTATACCTTCCGGTTT+GGG - chr4_4:59294318-59294337 Msa0691290:intron 35.0%
CCTTTATATAACTCCCAAAC+CGG + chr4_4:59294334-59294353 None:intergenic 35.0%
! CGGTTTGGGAGTTATATAAA+GGG - chr4_4:59294332-59294351 Msa0691290:intron 35.0%
GGAAACTGGAATTAAAGGAA+TGG + chr4_4:59294408-59294427 None:intergenic 35.0%
!!! TATTGTTGGTTTTACCTGCT+TGG - chr4_4:59294515-59294534 Msa0691290:intron 35.0%
GACAAAAATACCAGTCCTAA+AGG + chr4_4:59294546-59294565 None:intergenic 35.0%
!!! TCTATTACCTTTTGGCTTGT+AGG - chr4_4:59294652-59294671 Msa0691290:CDS 35.0%
TCAAGAAGCAAATCCTTTGA+TGG - chr4_4:59294733-59294752 Msa0691290:intron 35.0%
CATATTTGTGATCTCCTCTT+GGG + chr4_4:59294786-59294805 None:intergenic 35.0%
ACATATTTGTGATCTCCTCT+TGG + chr4_4:59294787-59294806 None:intergenic 35.0%
AAGAGGAGATCACAAATATG+TGG - chr4_4:59294786-59294805 Msa0691290:intron 35.0%
CACAAATATGTGGTTTAGTC+AGG - chr4_4:59294796-59294815 Msa0691290:intron 35.0%
! TTGATCTTTTCAGCAACAAG+AGG + chr4_4:59294908-59294927 None:intergenic 35.0%
! TAAGTACATGTTTGATGACC+AGG - chr4_4:59295177-59295196 Msa0691290:intron 35.0%
! AAGTACATGTTTGATGACCA+GGG - chr4_4:59295178-59295197 Msa0691290:intron 35.0%
! TCGGTCAATTTGCTTATTCT+TGG + chr4_4:59295434-59295453 None:intergenic 35.0%
! GAACAGCGTTTTTATAGAGT+CGG + chr4_4:59295453-59295472 None:intergenic 35.0%
! TTGTTACTGACTGCTATAGA+TGG - chr4_4:59295833-59295852 Msa0691290:CDS 35.0%
!! TAACTGTTTCTGCTAACAAC+CGG + chr4_4:59295972-59295991 None:intergenic 35.0%
TGAAGAAGAGAAGAGGTTGA+AGG + chr4_4:59289805-59289824 None:intergenic 40.0%
GAATTGGTGAAGAAGAGAAG+AGG + chr4_4:59289812-59289831 None:intergenic 40.0%
GGATTCGAGGAAATGGAATT+TGG + chr4_4:59289951-59289970 None:intergenic 40.0%
AGGATTACAATTCTGTGGTG+TGG - chr4_4:59290424-59290443 Msa0691290:CDS 40.0%
!!! AATCTGGTTTTGGCTCTGTT+TGG - chr4_4:59290506-59290525 Msa0691290:CDS 40.0%
! AATTCAACAGAGGGCTTGTT+TGG + chr4_4:59291012-59291031 None:intergenic 40.0%
TTTCTTTGATGTTGTGGTGG+TGG - chr4_4:59291049-59291068 Msa0691290:CDS 40.0%
TGAATCGATAATGCAGATGG+TGG - chr4_4:59291317-59291336 Msa0691290:intron 40.0%
TTGTGCTACAGGTATGAAGA+TGG - chr4_4:59291658-59291677 Msa0691290:intron 40.0%
! TGGAAACACAACTTTGAGGA+AGG - chr4_4:59291678-59291697 Msa0691290:intron 40.0%
AGCTGGATCAGTAAAGCTTA+TGG + chr4_4:59291767-59291786 None:intergenic 40.0%
TCCAGCTGATATACCAATCA+AGG - chr4_4:59291780-59291799 Msa0691290:CDS 40.0%
TCCTTGATTGGTATATCAGC+TGG + chr4_4:59291784-59291803 None:intergenic 40.0%
GTTAGGTCATGATCCTTGAT+TGG + chr4_4:59291796-59291815 None:intergenic 40.0%
TCATGACCTAACAACTGAAG+AGG - chr4_4:59291804-59291823 Msa0691290:CDS 40.0%
TTTGATTGTGGTTGTATGCC+AGG - chr4_4:59291914-59291933 Msa0691290:intron 40.0%
! CTTCACAGAGAGATTTTACC+TGG + chr4_4:59291935-59291954 None:intergenic 40.0%
! CTGTGAAGATTTGAGGGTTT+TGG - chr4_4:59291947-59291966 Msa0691290:intron 40.0%
! GTGAAGATTTGAGGGTTTTG+GGG - chr4_4:59291949-59291968 Msa0691290:intron 40.0%
ACTTTACTCTCCGTCATTTC+TGG - chr4_4:59292015-59292034 Msa0691290:intron 40.0%
! TGTATCTGCTGGTTATCTCT+AGG - chr4_4:59292117-59292136 Msa0691290:intron 40.0%
AGTTACCACTGAGTACTTTG+GGG - chr4_4:59292346-59292365 Msa0691290:intron 40.0%
AGAATGCCATGATACATGGA+AGG + chr4_4:59292520-59292539 None:intergenic 40.0%
GCTTAGAATGCCATGATACA+TGG + chr4_4:59292524-59292543 None:intergenic 40.0%
GCTTGATCTCATCCACAAAA+AGG + chr4_4:59292565-59292584 None:intergenic 40.0%
! GCTCATTGCTTTACCCATTT+TGG - chr4_4:59292587-59292606 Msa0691290:intron 40.0%
AAGCAAGGGAAAACAACTCA+TGG + chr4_4:59292677-59292696 None:intergenic 40.0%
! GTTTTCCCTTGCTTCTATGA+AGG - chr4_4:59292683-59292702 Msa0691290:intron 40.0%
GCAAACCTTCATAGAAGCAA+GGG + chr4_4:59292691-59292710 None:intergenic 40.0%
AGCAAACCTTCATAGAAGCA+AGG + chr4_4:59292692-59292711 None:intergenic 40.0%
!!! GCGCACAATATTTTTTTGGG+GGG - chr4_4:59292870-59292889 Msa0691290:intron 40.0%
TTGAGCTAGTGAGTCTTAGA+TGG - chr4_4:59293102-59293121 Msa0691290:intron 40.0%
! ATCTTACTTACCTTCTGGGA+TGG - chr4_4:59293366-59293385 Msa0691290:intron 40.0%
!! TCTTACTTACCTTCTGGGAT+GGG - chr4_4:59293367-59293386 Msa0691290:intron 40.0%
AACAAAATACCCATCCCAGA+AGG + chr4_4:59293379-59293398 None:intergenic 40.0%
ATCCTTCTTACCCTAAAACC+CGG + chr4_4:59293530-59293549 None:intergenic 40.0%
!!! GTTTTAGGGTAAGAAGGATC+TGG - chr4_4:59293531-59293550 Msa0691290:CDS 40.0%
GAACGTAAAAGGTGATTGAC+GGG - chr4_4:59293667-59293686 Msa0691290:CDS 40.0%
AAAGTTGGGGGTTATGTTAC+GGG - chr4_4:59293799-59293818 Msa0691290:intron 40.0%
TAGATGTAGTTACACGAGTC+CGG - chr4_4:59294159-59294178 Msa0691290:intron 40.0%
GAGATAAGGTGATAGCTTAG+TGG + chr4_4:59294265-59294284 None:intergenic 40.0%
TATATAACTCCCAAACCGGA+AGG + chr4_4:59294330-59294349 None:intergenic 40.0%
!! CCGGTTTGGGAGTTATATAA+AGG - chr4_4:59294331-59294350 Msa0691290:intron 40.0%
AAAATACCAGTCCTAAAGGG+AGG + chr4_4:59294542-59294561 None:intergenic 40.0%
GAATCATCGGAATCAGTTTC+AGG + chr4_4:59295046-59295065 None:intergenic 40.0%
CTCATCAGATGACGAATCAT+CGG + chr4_4:59295059-59295078 None:intergenic 40.0%
TGATTCGTCATCTGATGAGT+CGG - chr4_4:59295060-59295079 Msa0691290:intron 40.0%
CTTATGCTAAGAAGATGCTG+AGG - chr4_4:59295116-59295135 Msa0691290:intron 40.0%
AGATGCTGAGGAAAAAGCAA+AGG - chr4_4:59295128-59295147 Msa0691290:intron 40.0%
GATGCTGAGGAAAAAGCAAA+GGG - chr4_4:59295129-59295148 Msa0691290:intron 40.0%
TGATACTAGACCTGCAAAGA+AGG - chr4_4:59295303-59295322 Msa0691290:intron 40.0%
!! ATATAGCATTGGCCTTCTTG+CGG + chr4_4:59295384-59295403 None:intergenic 40.0%
TGGCTGATCTGATATAGCAT+TGG + chr4_4:59295395-59295414 None:intergenic 40.0%
TGTTCCAAAAAGGCCTCAAA+AGG - chr4_4:59295468-59295487 Msa0691290:intron 40.0%
!!! TACTCCTTTTGAGGCCTTTT+TGG + chr4_4:59295475-59295494 None:intergenic 40.0%
! GCAACTACATACTCCTTTTG+AGG + chr4_4:59295484-59295503 None:intergenic 40.0%
GAGTATGTAGTTGCGAAGAA+AGG - chr4_4:59295490-59295509 Msa0691290:intron 40.0%
!! GAAGAAAGGTGTCCAAGTTA+AGG - chr4_4:59295504-59295523 Msa0691290:intron 40.0%
GAAAAGTTCTTGTTGATCGC+AGG - chr4_4:59295536-59295555 Msa0691290:CDS 40.0%
AGGAAAAGTGGTATGGGTAA+GGG - chr4_4:59295574-59295593 Msa0691290:CDS 40.0%
AAAAGAGGTTCCAAGGCAAA+GGG - chr4_4:59295601-59295620 Msa0691290:CDS 40.0%
AGAAGAGAAGAGGTTGAAGG+AGG + chr4_4:59289802-59289821 None:intergenic 45.0%
AGAACGGTAACCGTGTTCTT+TGG + chr4_4:59289897-59289916 None:intergenic 45.0%
GTTTCCATGATGCACGAGAA+CGG + chr4_4:59289913-59289932 None:intergenic 45.0%
TCCGATAACGAGATGATCGA+CGG + chr4_4:59290041-59290060 None:intergenic 45.0%
CATGATGGTTCTCCCAATGT+TGG - chr4_4:59290193-59290212 Msa0691290:CDS 45.0%
GTCGCAGGATTACAATTCTG+TGG - chr4_4:59290419-59290438 Msa0691290:CDS 45.0%
TGTGGTGTGGTGTATGAAGA+AGG - chr4_4:59290437-59290456 Msa0691290:CDS 45.0%
GCCCTCTGTTGAATTCATTG+TGG - chr4_4:59291017-59291036 Msa0691290:CDS 45.0%
GCAGTTGTTTGAGAAGGTTG+AGG - chr4_4:59291084-59291103 Msa0691290:CDS 45.0%
GTTGTTTGAGAAGGTTGAGG+TGG - chr4_4:59291087-59291106 Msa0691290:CDS 45.0%
TGCGAGGATCAATCTTAGCA+GGG + chr4_4:59291177-59291196 None:intergenic 45.0%
ATGCGAGGATCAATCTTAGC+AGG + chr4_4:59291178-59291197 None:intergenic 45.0%
TTCTGCTCAACCAATAGCCA+AGG - chr4_4:59291225-59291244 Msa0691290:intron 45.0%
!! ATGCAGATGGTGGATGTACT+TGG - chr4_4:59291327-59291346 Msa0691290:intron 45.0%
!! AAGCAAAAGAGGCATCGTGA+CGG - chr4_4:59291357-59291376 Msa0691290:intron 45.0%
TGTTTGGACAGATACTCCTC+TGG - chr4_4:59291720-59291739 Msa0691290:CDS 45.0%
! GATACTCCTCTGGAGATTCT+TGG - chr4_4:59291730-59291749 Msa0691290:CDS 45.0%
ACTGAACCAAGAATCTCCAG+AGG + chr4_4:59291739-59291758 None:intergenic 45.0%
! ATCTGCTGGTTATCTCTAGG+TGG - chr4_4:59292120-59292139 Msa0691290:intron 45.0%
!! GCAGGTTCGGTCTTTTTAGA+AGG + chr4_4:59292173-59292192 None:intergenic 45.0%
GGTGGAAAATGAGCATGATG+TGG - chr4_4:59292205-59292224 Msa0691290:CDS 45.0%
GGAAAATGAGCATGATGTGG+TGG - chr4_4:59292208-59292227 Msa0691290:CDS 45.0%
GGAGGAACTGACAAATGCAA+TGG - chr4_4:59292259-59292278 Msa0691290:CDS 45.0%
! CAGCACTTGATTTGAGATGG+AGG + chr4_4:59292729-59292748 None:intergenic 45.0%
! TGTTCTTTTGGCCCTTCAGA+AGG - chr4_4:59293325-59293344 Msa0691290:intron 45.0%
CGTTTCTTGGTTGTTGTCAC+CGG - chr4_4:59293508-59293527 Msa0691290:CDS 45.0%
GTTTCTTGGTTGTTGTCACC+GGG - chr4_4:59293509-59293528 Msa0691290:CDS 45.0%
! GTTGTTGTCACCGGGTTTTA+GGG - chr4_4:59293517-59293536 Msa0691290:CDS 45.0%
! GTTGACACCACTGACTATGA+AGG - chr4_4:59293559-59293578 Msa0691290:CDS 45.0%
ACTGACTATGAAGGTGGTGA+GGG - chr4_4:59293568-59293587 Msa0691290:CDS 45.0%
TATGCACAAGCCTCAACTCA+AGG - chr4_4:59293772-59293791 Msa0691290:intron 45.0%
! AGGGAAGGCATATAAGTGAG+AGG - chr4_4:59293849-59293868 Msa0691290:CDS 45.0%
! GGGAAGGCATATAAGTGAGA+GGG - chr4_4:59293850-59293869 Msa0691290:CDS 45.0%
AAGTTGGGAGTCTGCATCAT+AGG + chr4_4:59294111-59294130 None:intergenic 45.0%
! TGATGCAGACTCCCAACTTT+TGG - chr4_4:59294112-59294131 Msa0691290:CDS 45.0%
!! ACTCCCAACTTTTGGAGGTA+TGG - chr4_4:59294120-59294139 Msa0691290:CDS 45.0%
GCTCCATACCTCCAAAAGTT+GGG + chr4_4:59294126-59294145 None:intergenic 45.0%
AGCTCCATACCTCCAAAAGT+TGG + chr4_4:59294127-59294146 None:intergenic 45.0%
!!! TTACCTTTTGGCTTGTAGGC+TGG - chr4_4:59294656-59294675 Msa0691290:CDS 45.0%
TCTGTAAGTGGCACCATCAA+AGG + chr4_4:59294749-59294768 None:intergenic 45.0%
!! TTGATGGTGCCACTTACAGA+TGG - chr4_4:59294749-59294768 Msa0691290:intron 45.0%
! TGCCACTTACAGATGGTACA+GGG - chr4_4:59294756-59294775 Msa0691290:intron 45.0%
TTTGTGATCTCCTCTTGGGT+GGG + chr4_4:59294782-59294801 None:intergenic 45.0%
ATTTGTGATCTCCTCTTGGG+TGG + chr4_4:59294783-59294802 None:intergenic 45.0%
TGTCTTTGCTGAAGCTGTAG+AGG - chr4_4:59294820-59294839 Msa0691290:intron 45.0%
TTTGCTGAAGCTGTAGAGGA+AGG - chr4_4:59294824-59294843 Msa0691290:intron 45.0%
GGATGACAGCGAGAATGAAA+TGG - chr4_4:59294859-59294878 Msa0691290:intron 45.0%
TCCTCATCCAGAAACCACTT+GGG + chr4_4:59295208-59295227 None:intergenic 45.0%
TTCCTCATCCAGAAACCACT+TGG + chr4_4:59295209-59295228 None:intergenic 45.0%
TGACAGGCTTAACTGGTACA+CGG + chr4_4:59295240-59295259 None:intergenic 45.0%
TCTTTCGTGACAGGCTTAAC+TGG + chr4_4:59295247-59295266 None:intergenic 45.0%
AGTTAAGCCTGTCACGAAAG+AGG - chr4_4:59295246-59295265 Msa0691290:intron 45.0%
TACTAGACCTGCAAAGAAGG+TGG - chr4_4:59295306-59295325 Msa0691290:intron 45.0%
GATTGAGAAAGTCCGCAAGA+AGG - chr4_4:59295369-59295388 Msa0691290:intron 45.0%
TTGGAACGGTCAGATATGTC+TGG + chr4_4:59295415-59295434 None:intergenic 45.0%
!! AAAGGTGTCCAAGTTAAGGC+TGG - chr4_4:59295508-59295527 Msa0691290:intron 45.0%
TGTCCAAGTTAAGGCTGGTA+AGG - chr4_4:59295513-59295532 Msa0691290:intron 45.0%
GTCCAAGTTAAGGCTGGTAA+GGG - chr4_4:59295514-59295533 Msa0691290:intron 45.0%
TTCCCTTACCAGCCTTAACT+TGG + chr4_4:59295519-59295538 None:intergenic 45.0%
AAGAGTGATGCGAGGAAAAG+TGG - chr4_4:59295562-59295581 Msa0691290:CDS 45.0%
TGATGCGAGGAAAAGTGGTA+TGG - chr4_4:59295567-59295586 Msa0691290:CDS 45.0%
GATGCGAGGAAAAGTGGTAT+GGG - chr4_4:59295568-59295587 Msa0691290:CDS 45.0%
GAGGAAAAGTGGTATGGGTA+AGG - chr4_4:59295573-59295592 Msa0691290:CDS 45.0%
AAAAGTGGTATGGGTAAGGG+AGG - chr4_4:59295577-59295596 Msa0691290:CDS 45.0%
CAAAAGAGGTTCCAAGGCAA+AGG - chr4_4:59295600-59295619 Msa0691290:CDS 45.0%
!! TATAAAATAAAAGAAAAAAA+AGG + chr4_4:59292080-59292099 None:intergenic 5.0%
GTTACCGTTCTCGTGCATCA+TGG - chr4_4:59289906-59289925 Msa0691290:three_prime_UTR 50.0%
AGCGTGAGGATTCGAGGAAA+TGG + chr4_4:59289958-59289977 None:intergenic 50.0%
ATCGACGGGAACACGTTGAA+CGG + chr4_4:59290026-59290045 None:intergenic 50.0%
CCGATAACGAGATGATCGAC+GGG + chr4_4:59290040-59290059 None:intergenic 50.0%
CCCGTCGATCATCTCGTTAT+CGG - chr4_4:59290037-59290056 Msa0691290:three_prime_UTR 50.0%
GCTCCGATTAAACCACTTCG+AGG - chr4_4:59290070-59290089 Msa0691290:exon 50.0%
GCGCCTCGAAGTGGTTTAAT+CGG + chr4_4:59290076-59290095 None:intergenic 50.0%
GATGGTTCTCCCAATGTTGG+TGG - chr4_4:59290196-59290215 Msa0691290:CDS 50.0%
!! TCCCAATGTTGGTGGTGCTT+GGG - chr4_4:59290204-59290223 Msa0691290:CDS 50.0%
!!! GTGATAGGTTTTCAGGTCGC+AGG - chr4_4:59290404-59290423 Msa0691290:CDS 50.0%
GGTTGAGGTGGAAAAACCAC+CGG - chr4_4:59291099-59291118 Msa0691290:CDS 50.0%
GCAGATTCAGAACGACTAGC+CGG + chr4_4:59291121-59291140 None:intergenic 50.0%
GCGAGGATCAATCTTAGCAG+GGG + chr4_4:59291176-59291195 None:intergenic 50.0%
!! AGCAAAAGAGGCATCGTGAC+GGG - chr4_4:59291358-59291377 Msa0691290:intron 50.0%
! TGCTGGTTATCTCTAGGTGG+CGG - chr4_4:59292123-59292142 Msa0691290:intron 50.0%
CTCAGCTGTAGTAGCAGGTT+CGG + chr4_4:59292186-59292205 None:intergenic 50.0%
!! ACCACTGAGTACTTTGGGGT+TGG - chr4_4:59292350-59292369 Msa0691290:intron 50.0%
! TCCAACCCCAAAGTACTCAG+TGG + chr4_4:59292354-59292373 None:intergenic 50.0%
!! TGGTTTTACAGGACAAGGCG+CGG - chr4_4:59292607-59292626 Msa0691290:intron 50.0%
GAAAGCTACAGGGATGCAAG+TGG - chr4_4:59292629-59292648 Msa0691290:intron 50.0%
! GGTTGTTGTCACCGGGTTTT+AGG - chr4_4:59293516-59293535 Msa0691290:CDS 50.0%
!!! CACCGGGTTTTAGGGTAAGA+AGG - chr4_4:59293525-59293544 Msa0691290:CDS 50.0%
! GACACCACTGACTATGAAGG+TGG - chr4_4:59293562-59293581 Msa0691290:CDS 50.0%
CTCACCACCTTCATAGTCAG+TGG + chr4_4:59293569-59293588 None:intergenic 50.0%
! CACTGACTATGAAGGTGGTG+AGG - chr4_4:59293567-59293586 Msa0691290:CDS 50.0%
! TGCAGACTCCCAACTTTTGG+AGG - chr4_4:59294115-59294134 Msa0691290:CDS 50.0%
GATTTAGTGGCTCCCACTAG+TGG - chr4_4:59294236-59294255 Msa0691290:intron 50.0%
GCTTAGTGGCATCCACTAGT+GGG + chr4_4:59294251-59294270 None:intergenic 50.0%
AGCTTAGTGGCATCCACTAG+TGG + chr4_4:59294252-59294271 None:intergenic 50.0%
TCACCAGCCTACAAGCCAAA+AGG + chr4_4:59294662-59294681 None:intergenic 50.0%
!! GTGCCACTTACAGATGGTAC+AGG - chr4_4:59294755-59294774 Msa0691290:intron 50.0%
!! AGAGGAAGGAGGCTTTGAGA+AGG - chr4_4:59294838-59294857 Msa0691290:intron 50.0%
! TCGGAATCAGTTTCAGGTGC+AGG + chr4_4:59295040-59295059 None:intergenic 50.0%
TTCGTCATCTGATGAGTCGG+AGG - chr4_4:59295063-59295082 Msa0691290:intron 50.0%
GATGAGTCGGAGGATGATGT+TGG - chr4_4:59295073-59295092 Msa0691290:intron 50.0%
GCAACATCCTCTTTCGTGAC+AGG + chr4_4:59295256-59295275 None:intergenic 50.0%
AACACGCTTCTTCCGTGCTT+TGG + chr4_4:59295338-59295357 None:intergenic 50.0%
! GGAAGAAGCGTGTTGCAATG+AGG - chr4_4:59295344-59295363 Msa0691290:intron 50.0%
ATGGGTAAGGGAGGCAAAAG+AGG - chr4_4:59295586-59295605 Msa0691290:CDS 50.0%
!! TTTGGTGCCTTACCACCCTT+TGG + chr4_4:59295637-59295656 None:intergenic 50.0%
! AAAGGGTGGTAAGGCACCAA+AGG - chr4_4:59295636-59295655 Msa0691290:CDS 50.0%
! AAGGGTGGTAAGGCACCAAA+GGG - chr4_4:59295637-59295656 Msa0691290:CDS 50.0%
GACTTGCATCCAACCACCAG+GGG + chr4_4:59290002-59290021 None:intergenic 55.0%
CGACTTGCATCCAACCACCA+GGG + chr4_4:59290003-59290022 None:intergenic 55.0%
ATAGCAATCGCGCCTCGAAG+TGG + chr4_4:59290085-59290104 None:intergenic 55.0%
! TCGAGGCGCGATTGCTATTC+AGG - chr4_4:59290087-59290106 Msa0691290:CDS 55.0%
!! CTCCCAATGTTGGTGGTGCT+TGG - chr4_4:59290203-59290222 Msa0691290:CDS 55.0%
GCCCAAGCACCACCAACATT+GGG + chr4_4:59290208-59290227 None:intergenic 55.0%
AGCCCAAGCACCACCAACAT+TGG + chr4_4:59290209-59290228 None:intergenic 55.0%
! GATTCAGAACGACTAGCCGG+TGG + chr4_4:59291118-59291137 None:intergenic 55.0%
CGAACCTGCTACTACAGCTG+AGG - chr4_4:59292184-59292203 Msa0691290:CDS 55.0%
ACCTGCTACTACAGCTGAGG+TGG - chr4_4:59292187-59292206 Msa0691290:CDS 55.0%
TCCACCTCAGCTGTAGTAGC+AGG + chr4_4:59292191-59292210 None:intergenic 55.0%
ACAAGGCGCGGAAAGCTACA+GGG - chr4_4:59292619-59292638 Msa0691290:intron 55.0%
TGAAGGTGGTGAGGGTGAAG+TGG - chr4_4:59293576-59293595 Msa0691290:CDS 55.0%
ACCTGCTTGGACCTCCCTTT+AGG - chr4_4:59294528-59294547 Msa0691290:intron 55.0%
TCCTAAAGGGAGGTCCAAGC+AGG + chr4_4:59294532-59294551 None:intergenic 55.0%
!! CTTGGACCTCCCTTTAGGAC+TGG - chr4_4:59294533-59294552 Msa0691290:intron 55.0%
GGCCCTGTACCATCTGTAAG+TGG + chr4_4:59294761-59294780 None:intergenic 55.0%
GCTGAAGCTGTAGAGGAAGG+AGG - chr4_4:59294827-59294846 Msa0691290:intron 55.0%
ATGACCAGGGATTGCCCAAG+TGG - chr4_4:59295191-59295210 Msa0691290:intron 55.0%
GAAACCACTTGGGCAATCCC+TGG + chr4_4:59295198-59295217 None:intergenic 55.0%
GGGATTGCCCAAGTGGTTTC+TGG - chr4_4:59295198-59295217 Msa0691290:intron 55.0%
! GCCCAAGTGGTTTCTGGATG+AGG - chr4_4:59295204-59295223 Msa0691290:intron 55.0%
ACCTGCAAAGAAGGTGGCTG+AGG - chr4_4:59295312-59295331 Msa0691290:intron 55.0%
GCAGGATGAAGAGTGATGCG+AGG - chr4_4:59295554-59295573 Msa0691290:CDS 55.0%
GGGAGGCAAAAGAGGTTCCA+AGG - chr4_4:59295594-59295613 Msa0691290:CDS 55.0%
AGAGGTTCCAAGGCAAAGGG+TGG - chr4_4:59295604-59295623 Msa0691290:CDS 55.0%
TTCCAAGGCAAAGGGTGGCA+AGG - chr4_4:59295609-59295628 Msa0691290:CDS 55.0%
! AAAGGGTGGCAAGGCACCAA+AGG - chr4_4:59295618-59295637 Msa0691290:CDS 55.0%
! AAGGGTGGCAAGGCACCAAA+GGG - chr4_4:59295619-59295638 Msa0691290:CDS 55.0%
! CAAGGCACCAAAGGGTGGTA+AGG - chr4_4:59295627-59295646 Msa0691290:CDS 55.0%
! TAAGGCACCAAAGGGTGGCA+GGG - chr4_4:59295645-59295664 Msa0691290:CDS 55.0%
GAACGGAGCGTGAGGATTCG+AGG + chr4_4:59289964-59289983 None:intergenic 60.0%
GAGATCGAGAACGGAGCGTG+AGG + chr4_4:59289972-59289991 None:intergenic 60.0%
GGCGGCACAGAGATCGAGAA+CGG + chr4_4:59289981-59290000 None:intergenic 60.0%
TTGCATCCAACCACCAGGGG+CGG + chr4_4:59289999-59290018 None:intergenic 60.0%
GCGACTTGCATCCAACCACC+AGG + chr4_4:59290004-59290023 None:intergenic 60.0%
GACAAGGCGCGGAAAGCTAC+AGG - chr4_4:59292618-59292637 Msa0691290:intron 60.0%
GCCTCAGCCACCTTCTTTGC+AGG + chr4_4:59295316-59295335 None:intergenic 60.0%
AGGTGGCTGAGGCCAAAGCA+CGG - chr4_4:59295323-59295342 Msa0691290:intron 60.0%
TGCCTTGCCACCCTTTGCCT+TGG + chr4_4:59295614-59295633 None:intergenic 60.0%
! GGTGGTAAGGCACCAAAGGG+TGG - chr4_4:59295640-59295659 Msa0691290:CDS 60.0%
! GTAAGGCACCAAAGGGTGGC+AGG - chr4_4:59295644-59295663 Msa0691290:CDS 60.0%
TCCGAGTGGCAAGGCTCCTA+TGG - chr4_4:59295669-59295688 Msa0691290:CDS 60.0%
CCCATAGGAGCCTTGCCACT+CGG + chr4_4:59295673-59295692 None:intergenic 60.0%
CCGAGTGGCAAGGCTCCTAT+GGG - chr4_4:59295670-59295689 Msa0691290:CDS 60.0%
AGTGGCAAGGCTCCTATGGG+TGG - chr4_4:59295673-59295692 Msa0691290:CDS 60.0%
! GGTGGTGGCAAGGCACCAAA+GGG - chr4_4:59295691-59295710 Msa0691290:CDS 60.0%
! CAAGGCACCAAAGGGCAGCA+GGG - chr4_4:59295699-59295718 Msa0691290:CDS 60.0%
! AAGGCACCAAAGGGCAGCAG+GGG - chr4_4:59295700-59295719 Msa0691290:CDS 60.0%
TTCCTTCCCTTCTTGCCGCC+CGG + chr4_4:59295727-59295746 None:intergenic 60.0%
TGGTACAGGGCCCACCCAAG+AGG - chr4_4:59294769-59294788 Msa0691290:intron 65.0%
! GGTGGCAAGGCACCAAAGGG+TGG - chr4_4:59295622-59295641 Msa0691290:CDS 65.0%
GGCAAGGCTCCTATGGGTGG+TGG - chr4_4:59295676-59295695 Msa0691290:CDS 65.0%
! GGCTCCTATGGGTGGTGGCA+AGG - chr4_4:59295681-59295700 Msa0691290:CDS 65.0%
GGTGCCTTGCCACCACCCAT+AGG + chr4_4:59295688-59295707 None:intergenic 65.0%
! GGGTGGTGGCAAGGCACCAA+AGG - chr4_4:59295690-59295709 Msa0691290:CDS 65.0%
! GCAAGGCACCAAAGGGCAGC+AGG - chr4_4:59295698-59295717 Msa0691290:CDS 65.0%
AGGCACCAAAGGGCAGCAGG+GGG - chr4_4:59295701-59295720 Msa0691290:CDS 65.0%
CTCGATCTCTGTGCCGCCCC+TGG - chr4_4:59289983-59290002 Msa0691290:three_prime_UTR 70.0%
GATCTCTGTGCCGCCCCTGG+TGG - chr4_4:59289986-59290005 Msa0691290:three_prime_UTR 70.0%
TCTGTGCCGCCCCTGGTGGT+TGG - chr4_4:59289990-59290009 Msa0691290:three_prime_UTR 70.0%
CTCGGAGCCCTGCCACCCTT+TGG + chr4_4:59295655-59295674 None:intergenic 70.0%
AAGGGTGGCAGGGCTCCGAG+TGG - chr4_4:59295655-59295674 Msa0691290:CDS 70.0%
TGGCAGGGCTCCGAGTGGCA+AGG - chr4_4:59295660-59295679 Msa0691290:CDS 70.0%
ACCAAAGGGCAGCAGGGGGC+CGG - chr4_4:59295705-59295724 Msa0691290:CDS 70.0%
CCAAAGGGCAGCAGGGGGCC+GGG - chr4_4:59295706-59295725 Msa0691290:CDS 75.0%
AGGGGGCCGGGCGGCAAGAA+GGG - chr4_4:59295718-59295737 Msa0691290:CDS 75.0%
GGCCGGGCGGCAAGAAGGGA+AGG - chr4_4:59295722-59295741 Msa0691290:CDS 75.0%
! CCCGGCCCCCTGCTGCCCTT+TGG + chr4_4:59295709-59295728 None:intergenic 80.0%
! AAGGGCAGCAGGGGGCCGGG+CGG - chr4_4:59295709-59295728 Msa0691290:CDS 80.0%
! CAGGGGGCCGGGCGGCAAGA+AGG - chr4_4:59295717-59295736 Msa0691290:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 59289799 59296038 59289799 ID=Msa0691290;Name=Msa0691290
chr4_4 mRNA 59289799 59296038 59289799 ID=Msa0691290-mRNA-1;Parent=Msa0691290;Name=Msa0691290-mRNA-1;_AED=0.04;_eAED=0.04;_QI=40|0.81|0.91|0.91|1|1|12|288|873
chr4_4 exon 59289799 59291163 59289799 ID=Msa0691290-mRNA-1:exon:16116;Parent=Msa0691290-mRNA-1
chr4_4 exon 59291701 59291827 59291701 ID=Msa0691290-mRNA-1:exon:16115;Parent=Msa0691290-mRNA-1
chr4_4 exon 59292160 59292299 59292160 ID=Msa0691290-mRNA-1:exon:16114;Parent=Msa0691290-mRNA-1
chr4_4 exon 59292449 59292493 59292449 ID=Msa0691290-mRNA-1:exon:16113;Parent=Msa0691290-mRNA-1
chr4_4 exon 59293133 59293219 59293133 ID=Msa0691290-mRNA-1:exon:16112;Parent=Msa0691290-mRNA-1
chr4_4 exon 59293506 59293698 59293506 ID=Msa0691290-mRNA-1:exon:16111;Parent=Msa0691290-mRNA-1
chr4_4 exon 59293840 59293901 59293840 ID=Msa0691290-mRNA-1:exon:16110;Parent=Msa0691290-mRNA-1
chr4_4 exon 59294012 59294168 59294012 ID=Msa0691290-mRNA-1:exon:16109;Parent=Msa0691290-mRNA-1
chr4_4 exon 59294458 59294504 59294458 ID=Msa0691290-mRNA-1:exon:16108;Parent=Msa0691290-mRNA-1
chr4_4 exon 59294591 59294749 59294591 ID=Msa0691290-mRNA-1:exon:16107;Parent=Msa0691290-mRNA-1
chr4_4 exon 59295379 59295426 59295379 ID=Msa0691290-mRNA-1:exon:16106;Parent=Msa0691290-mRNA-1
chr4_4 exon 59295519 59296038 59295519 ID=Msa0691290-mRNA-1:exon:16105;Parent=Msa0691290-mRNA-1
chr4_4 five_prime_UTR 59295999 59296038 59295999 ID=Msa0691290-mRNA-1:five_prime_utr;Parent=Msa0691290-mRNA-1
chr4_4 CDS 59295519 59295998 59295519 ID=Msa0691290-mRNA-1:cds;Parent=Msa0691290-mRNA-1
chr4_4 CDS 59295379 59295426 59295379 ID=Msa0691290-mRNA-1:cds;Parent=Msa0691290-mRNA-1
chr4_4 CDS 59294591 59294749 59294591 ID=Msa0691290-mRNA-1:cds;Parent=Msa0691290-mRNA-1
chr4_4 CDS 59294458 59294504 59294458 ID=Msa0691290-mRNA-1:cds;Parent=Msa0691290-mRNA-1
chr4_4 CDS 59294012 59294168 59294012 ID=Msa0691290-mRNA-1:cds;Parent=Msa0691290-mRNA-1
chr4_4 CDS 59293840 59293901 59293840 ID=Msa0691290-mRNA-1:cds;Parent=Msa0691290-mRNA-1
chr4_4 CDS 59293506 59293698 59293506 ID=Msa0691290-mRNA-1:cds;Parent=Msa0691290-mRNA-1
chr4_4 CDS 59293133 59293219 59293133 ID=Msa0691290-mRNA-1:cds;Parent=Msa0691290-mRNA-1
chr4_4 CDS 59292449 59292493 59292449 ID=Msa0691290-mRNA-1:cds;Parent=Msa0691290-mRNA-1
chr4_4 CDS 59292160 59292299 59292160 ID=Msa0691290-mRNA-1:cds;Parent=Msa0691290-mRNA-1
chr4_4 CDS 59291701 59291827 59291701 ID=Msa0691290-mRNA-1:cds;Parent=Msa0691290-mRNA-1
chr4_4 CDS 59290087 59291163 59290087 ID=Msa0691290-mRNA-1:cds;Parent=Msa0691290-mRNA-1
chr4_4 three_prime_UTR 59289799 59290086 59289799 ID=Msa0691290-mRNA-1:three_prime_utr;Parent=Msa0691290-mRNA-1
Gene Sequence

>Msa0691290

ATGGGTAAAGCAAAAGCAAAAGGAAAACATCGTTTAGACAAATACTACTACTTAGCCAAAGAACACGGTTACCGTTCTCGTGCATCATGGAAACTCGTTCAAATCAATTCCAAATTCCATTTCCTCGAATCCTCACGCTCCGTTCTCGATCTCTGTGCCGCCCCTGGTGGTTGGATGCAAGTCGCCGTTCAACGTGTTCCCGTCGATCATCTCGTTATCGGAGTCGATCTAGCTCCGATTAAACCACTTCGAGGCGCGATTGCTATTCAGGAAGATATTACTAGACCTGAATGTAAATCTAGAGTTAGGAAAATCATGAATGAAAATGGTTATCGTGCTTTTGATGTTATTCTTCATGATGGTTCTCCCAATGTTGGTGGTGCTTGGGCTCAAGAAGCTACTAGTCAGAATTCGCTTGTTATTGATGCTGTTAAGCTTGCTACTCAGTTTTTAGCTCCTAAGGGAACTTTTGTTACCAAGGTTTTCAGGTCGCAGGATTACAATTCTGTGGTGTGGTGTATGAAGAAGTTGTTTGAGAAGGTTGAGGTGGAAAAACCACCGGCTAGTCGTTCTGAATCTGCTGAGATATATATTTTGGGGATTAAGTATTTAGCCCCTGCTAAGATTGATCCTCGCATTCTTGATATCAAACATCTTTTTGAGGCTTCTGCTCAACCAATAGCCAAGATGGTGGATGTACTTGGAAACAATAAGCAAAAGAGGCATCGTGACGGGTATGAAGATGGAAACACAACTTTGAGGAAGGTGTCTTCAGCTGCAAATTTTGTTTGGACAGATACTCCTCTGGAGATTCTTGGTTCAGTTACTTCCATAAGCTTTACTGATCCAGCTGATATACCAATCAAGGATCATGACCTAACAACTGAAGAGGTAAAATCTCTCTGTGAAGATTTGAGGGTTTTGGGGAAGCAAGACTTCAAGCATCTTCTAAAGTGGCGGATTAACATTAGAAAAGCTCTATCACCTTCTAAAAAGACCGAACCTGCTACTACAGCTGAGGTGGAAAATGAGCATGATGTGGTGGATGAAGATGATAGAATACTCAACGAAATGGAGGAACTGACAAATGCAATGGACCGCAAGAAGAAGCGTGAAAAAAAGATTCTATCAAAAAGAAGAGCCAAGGACAAGGCGCGGAAAGCTACAGGGATGCAAGTGGATGCAGTAGAAGATTATGTTGACCATGAGTTGTTTTCCCTTGCTTCTATGAAGAAGGAAACCATAAAGAGAGTATATCTTACTTACCTTCTGGGATGGGGTAAGAAGGATCTGGTAGCTGTTGACACCACTGACTATGAAGGTGGTGAGGGTGAAGTGGATGACAGTGAGAATGATGAAAACAAAGGTGGCTCAGAGCATTCATCTAGTGATTTAGATTCTGACGAAGAACGTAAAAGATATGATGAACAAATGGAGGATTTACTTGAACAAGCTTATGAGCGGTTTGTGATAAAAAAGGAAGGCACTGCACAGCAGCGTAAGCGTATCAAGAAATCCTATGATGCAGACTCCCAACTTTTGGAGGCTGGTGAAGATGATGACATTATTCCGTCCAAATATGATTCAGATGAAGATCAGGATGTTCAAGAAGCAAATCCTTTGATGGTGCCACTTACAGATGGTACAGGGCCCACCCAAGAGGAGATCACAAATATGTGGTTTAGTCAGGATGTCTTTGCTGAAGCTGTAGAGGAAGGAGGCTTTGAGAAGGATGACAGCGAGAATGAAATGGATATTGATGAGTTGAAGGAGAAGCCTCTTGTTGCTGAAAAGATCAAAGAAAATAAGCCTATTGCTGAAAAGATCAAAGAAAATAAAATGGCTACTTCTGTCGAGACAGATCGCAGTCAATCTAAAGCATCCAATGAAATGGATTTTGAGATTGTTCCTGCACCTGAAACTGATTCCGATGATTCGTCATCTGATGAGTCGGAGGATGATGTTGGAAAAAAAGCTGAGATACTAGCTTATGCTAAGAAGATGCTGAGGAAAAAGCAAAGGGAACAGATGCTAGATGATGCATATAATAAGTACATGTTTGATGACCAGGGATTGCCCAAGTGGTTTCTGGATGAGGAAAGAAAACACCGTGTACCAGTTAAGCCTGTCACGAAAGAGGATGTTGCTGCTATGAAAGCACAATTTAAAGCAATTGATACTAGACCTGCAAAGAAGGTGGCTGAGGCCAAAGCACGGAAGAAGCGTGTTGCAATGAGGAAGATTGAGAAAGTCCGCAAGAAGGCCAATGCTATATCAGATCAGCCAGACATATCTGACCGTTCCAAGAATAAGCAAATTGACCGACTCTATAAAAACGCTGTTCCAAAAAGGCCTCAAAAGGAGTATGTAGTTGCGAAGAAAGGTGTCCAAGTTAAGGCTGGTAAGGGAAAAGTTCTTGTTGATCGCAGGATGAAGAGTGATGCGAGGAAAAGTGGTATGGGTAAGGGAGGCAAAAGAGGTTCCAAGGCAAAGGGTGGCAAGGCACCAAAGGGTGGTAAGGCACCAAAGGGTGGCAGGGCTCCGAGTGGCAAGGCTCCTATGGGTGGTGGCAAGGCACCAAAGGGCAGCAGGGGGCCGGGCGGCAAGAAGGGAAGGAAATAA
Protein sequence

>Msa0691290

MGKAKAKGKHRLDKYYYLAKEHGYRSRASWKLVQINSKFHFLESSRSVLDLCAAPGGWMQVAVQRVPVDHLVIGVDLAPIKPLRGAIAIQEDITRPECKSRVRKIMNENGYRAFDVILHDGSPNVGGAWAQEATSQNSLVIDAVKLATQFLAPKGTFVTKVFRSQDYNSVVWCMKKLFEKVEVEKPPASRSESAEIYILGIKYLAPAKIDPRILDIKHLFEASAQPIAKMVDVLGNNKQKRHRDGYEDGNTTLRKVSSAANFVWTDTPLEILGSVTSISFTDPADIPIKDHDLTTEEVKSLCEDLRVLGKQDFKHLLKWRINIRKALSPSKKTEPATTAEVENEHDVVDEDDRILNEMEELTNAMDRKKKREKKILSKRRAKDKARKATGMQVDAVEDYVDHELFSLASMKKETIKRVYLTYLLGWGKKDLVAVDTTDYEGGEGEVDDSENDENKGGSEHSSSDLDSDEERKRYDEQMEDLLEQAYERFVIKKEGTAQQRKRIKKSYDADSQLLEAGEDDDIIPSKYDSDEDQDVQEANPLMVPLTDGTGPTQEEITNMWFSQDVFAEAVEEGGFEKDDSENEMDIDELKEKPLVAEKIKENKPIAEKIKENKMATSVETDRSQSKASNEMDFEIVPAPETDSDDSSSDESEDDVGKKAEILAYAKKMLRKKQREQMLDDAYNKYMFDDQGLPKWFLDEERKHRVPVKPVTKEDVAAMKAQFKAIDTRPAKKVAEAKARKKRVAMRKIEKVRKKANAISDQPDISDRSKNKQIDRLYKNAVPKRPQKEYVVAKKGVQVKAGKGKVLVDRRMKSDARKSGMGKGGKRGSKAKGGKAPKGGKAPKGGRAPSGKAPMGGGKAPKGSRGPGGKKGRK*