AlfalfaGEDB | Msa0797360

M. sativa cultivar zhongmu-4 / Msa0797360

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0797360	XP_003611496.1	77.070	314	39	3	1	288	1	307	3.13e-154	443

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0797360	sp\|Q9T072\|BH025_ARATH	38.384	198	95	3	113	283	127	324	5.35e-32	124

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0797360	G7K128	77.070	314	39	3	1	288	1	307	1.50e-154	443

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TFs/TRs:

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Gene ID	Type	Classification
Msa0797360	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0142200	Msa0797360	0.802062	6.704005e-49	-8.615850e-47
Msa0221060	Msa0797360	0.802773	4.785662e-49	-8.615850e-47
Msa0227470	Msa0797360	0.819536	1.103284e-52	-8.615850e-47
Msa0243890	Msa0797360	0.806173	9.354331e-50	-8.615850e-47
Msa0266000	Msa0797360	-0.804081	2.563277e-49	-8.615850e-47
Msa0272730	Msa0797360	0.800716	1.265106e-48	-8.615850e-47
Msa0338110	Msa0797360	0.805382	1.371465e-49	-8.615850e-47
Msa0376590	Msa0797360	0.808633	2.813340e-50	-8.615850e-47
Msa0452920	Msa0797360	0.800888	1.166473e-48	-8.615850e-47
Msa0483650	Msa0797360	0.811098	8.297845e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0797360	MtrunA17_Chr5g0400621	61.976	334	80	5	1	288	1	333	8.95e-110	321
Msa0797360	MtrunA17_Chr5g0400641	81.395	129	18	1	141	263	1	129	3.73e-65	201
Msa0797360	MtrunA17_Chr2g0307131	35.262	363	152	14	1	288	1	355	4.59e-42	148
Msa0797360	MtrunA17_Chr4g0033281	36.499	337	153	15	1	288	1	325	3.66e-39	139
Msa0797360	MtrunA17_Chr6g0468491	35.556	315	137	10	36	288	3	313	1.65e-36	132
Msa0797360	MtrunA17_Chr4g0033291	34.603	315	146	11	25	288	23	328	8.44e-36	130
Msa0797360	MtrunA17_Chr4g0033391	33.129	326	168	11	1	285	1	317	2.10e-35	129
Msa0797360	MtrunA17_Chr5g0400661	34.589	292	157	6	6	263	2	293	4.94e-35	129
Msa0797360	MtrunA17_Chr4g0054621	33.898	354	144	14	4	288	9	341	3.78e-34	127
Msa0797360	MtrunA17_Chr2g0307141	41.758	182	80	2	133	288	178	359	1.55e-33	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0797360	AT4G37850.2	38.384	198	95	3	113	283	127	324	5.44e-33	124
Msa0797360	AT4G37850.1	38.384	198	95	3	113	283	127	324	5.44e-33	124
Msa0797360	AT2G22750.1	38.953	172	92	2	105	263	91	262	1.57e-22	95.1
Msa0797360	AT2G22750.2	38.953	172	92	2	105	263	91	262	1.59e-22	95.1
Msa0797360	AT2G22750.4	38.953	172	92	2	105	263	119	290	1.74e-22	95.5
Msa0797360	AT2G22750.3	38.953	172	92	2	105	263	119	290	1.85e-22	95.5
Msa0797360	AT2G22750.5	38.953	172	92	2	105	263	115	286	1.89e-22	95.5
Msa0797360	AT2G22760.2	40.288	139	71	4	132	261	116	251	9.28e-21	90.1
Msa0797360	AT2G22760.1	40.288	139	71	4	132	261	116	251	1.47e-20	89.7
Msa0797360	AT2G22770.1	35.811	148	74	2	137	263	131	278	2.87e-19	86.7

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Find 49 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAAATATATTAAAGAA+AGG	0.536678	5_3:-9480157	None:intergenic
AACAAATACATCCCAAATCA+AGG	0.480151	5_3:-9480090	None:intergenic
AACTACCTCAAAATCAAGAA+GGG	0.608663	5_3:+9473257	Msa0797360:CDS
AAGTTATTATTCTTGTCCTT+TGG	0.396571	5_3:+9473156	Msa0797360:CDS
AATTAGCTGGTTATCTGATT+GGG	0.417900	5_3:+9472861	Msa0797360:CDS
ACGGACAAGACTTCAGTCAT+AGG	0.509641	5_3:+9474854	Msa0797360:CDS
ACTCTAGCTGCTCTTATTCC+TGG	0.272370	5_3:+9473415	Msa0797360:CDS
AGTATTATTATTTCATCGAC+CGG	0.498715	5_3:-9479868	None:intergenic
ATAATAATACTAAGATGTCA+TGG	0.553313	5_3:+9479880	Msa0797360:three_prime_UTR
ATGGAGTGAATATGGTTCTA+AGG	0.389690	5_3:+9474997	Msa0797360:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCTTAACAATTTCAGAGAT+TGG	-	chr5_3:9472768-9472787	None:intergenic	30.0%
AATTAGCTGGTTATCTGATT+GGG	+	chr5_3:9472861-9472880	Msa0797360:CDS	30.0%
AACTACCTCAAAATCAAGAA+GGG	+	chr5_3:9473257-9473276	Msa0797360:CDS	30.0%
GTTATTTAACCGGATTAACT+CGG	+	chr5_3:9473887-9473906	Msa0797360:intron	30.0%
CTGCTTACTTGAATTTATGT+TGG	-	chr5_3:9474104-9474123	None:intergenic	30.0%
GTGTTGGAATTATACTTTGT+TGG	-	chr5_3:9474160-9474179	None:intergenic	30.0%
CAAAAATTAATAACTCGGCT+CGG	-	chr5_3:9474447-9474466	None:intergenic	30.0%
TACACATACCGAATAAAGTT+TGG	-	chr5_3:9474481-9474500	None:intergenic	30.0%
TGTAGTGATGAGAATTCATT+TGG	-	chr5_3:9474686-9474705	None:intergenic	30.0%
TGCTATTAACAACAAAGAGA+TGG	-	chr5_3:9475153-9475172	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	9472726	9480191	9472726	ID=Msa0797360;Name=Msa0797360
chr5_3	mRNA	9472726	9480191	9472726	ID=Msa0797360-mRNA-1;Parent=Msa0797360;Name=Msa0797360-mRNA-1;_AED=0.04;_eAED=0.04;_QI=100\|0.5\|0.6\|1\|0.5\|0.6\|5\|338\|288
chr5_3	exon	9472726	9472882	9472726	ID=Msa0797360-mRNA-1:exon:4100;Parent=Msa0797360-mRNA-1
chr5_3	exon	9473007	9473447	9473007	ID=Msa0797360-mRNA-1:exon:4101;Parent=Msa0797360-mRNA-1
chr5_3	exon	9474854	9474944	9474854	ID=Msa0797360-mRNA-1:exon:4102;Parent=Msa0797360-mRNA-1
chr5_3	exon	9474963	9475162	9474963	ID=Msa0797360-mRNA-1:exon:4103;Parent=Msa0797360-mRNA-1
chr5_3	exon	9479776	9480191	9479776	ID=Msa0797360-mRNA-1:exon:4104;Parent=Msa0797360-mRNA-1
chr5_3	five_prime_UTR	9472726	9472825	9472726	ID=Msa0797360-mRNA-1:five_prime_utr;Parent=Msa0797360-mRNA-1
chr5_3	CDS	9472826	9472882	9472826	ID=Msa0797360-mRNA-1:cds;Parent=Msa0797360-mRNA-1
chr5_3	CDS	9473007	9473447	9473007	ID=Msa0797360-mRNA-1:cds;Parent=Msa0797360-mRNA-1
chr5_3	CDS	9474854	9474944	9474854	ID=Msa0797360-mRNA-1:cds;Parent=Msa0797360-mRNA-1
chr5_3	CDS	9474963	9475162	9474963	ID=Msa0797360-mRNA-1:cds;Parent=Msa0797360-mRNA-1
chr5_3	CDS	9479776	9479853	9479776	ID=Msa0797360-mRNA-1:cds;Parent=Msa0797360-mRNA-1
chr5_3	three_prime_UTR	9479854	9480191	9479854	ID=Msa0797360-mRNA-1:three_prime_utr;Parent=Msa0797360-mRNA-1

Gene Sequence

>Msa0797360

ATGGAAAAATTAAACACTTCTTCAAACGCATCATCAATTAGCTGGTTATCTGATTGGCTATTTGAAGAAAATGAAATAGAGGGTTGTAATTTGTTTCAGCAATGCGAACAAAACTTGTATGGTGAAGAAGAGTTTCTTTCACATGACATAGCAAGTATTTTTCAACAAGAGGAAAATTTGCAACATCAACCATTGTTACCTTTTGAAAGTTATTATTCTTGTCCTTTGGAAACAAATTTGGAAAGAGACAACAAGAAGTTGAAAACGAACACCACTTTGCATGAAGTTGTTCCATTGTCACAAACACAACTACCTCAAAATCAAGAAGGGTCATTGCAAAAGCAAAACGTTGTTGAAACTAAAAATACACAAAGACAAGAGACTAAGAGGTCTGTTGCTCGTGATCATCAAGACCGTATCATGGCGGAGAGAAAGAGAAGAGAAAAACTCAGTCAGTGCTTGATTACTCTAGCTGCTCTTATTCCTGGCTTGAAGAAGACGGACAAGACTTCAGTCATAGGAGATGCTATCAAGCATGTGAAAGAGCTCCAAGAACGTTTGAGAGTATTAGAAGAACAGAACAAGAATATGACGCTTAACAAATCGCAGCTAAGTTACAAGTCATGGAGTGAATATGGTTCTAAGGCTGCTAGTTCTATTAATGAAGATCTCCTCCACGTGGATGCCAAAATTTTGGACAAAAACGTGCTCATAAGGATCCAGTGCCAAAAGCAAAAGAGTTTTTTGCTTAATAAATTGGTTGAGATTCAAAAGCTCCATCTCTTTGTTAAAGAAACAGGATACAACTTGACCGAAAATGATCTTGTAAAAAGCGTACGCGCTGCTGTATTGAGATCCATGTCGTAA

Protein sequence

>Msa0797360

MEKLNTSSNASSISWLSDWLFEENEIEGCNLFQQCEQNLYGEEEFLSHDIASIFQQEENLQHQPLLPFESYYSCPLETNLERDNKKLKTNTTLHEVVPLSQTQLPQNQEGSLQKQNVVETKNTQRQETKRSVARDHQDRIMAERKRREKLSQCLITLAALIPGLKKTDKTSVIGDAIKHVKELQERLRVLEEQNKNMTLNKSQLSYKSWSEYGSKAASSINEDLLHVDAKILDKNVLIRIQCQKQKSFLLNKLVEIQKLHLFVKETGYNLTENDLVKSVRAAVLRSMS*