AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0954550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0954550 MtrunA17_Chr3g0105881 93.194 191 8 1 2 187 202 392 4.92e-122 350
Msa0954550 MtrunA17_Chr3g0086371 35.233 193 114 5 2 187 69 257 2.31e-29 108
Msa0954550 MtrunA17_Chr4g0058541 38.971 136 81 2 20 154 220 354 2.37e-21 90.5
Msa0954550 MtrunA17_Chr4g0058541 32.571 175 107 5 8 180 305 470 2.14e-13 67.4
Msa0954550 MtrunA17_Chr3g0116991 38.235 136 82 2 20 154 217 351 2.64e-19 84.7
Msa0954550 MtrunA17_Chr3g0116991 33.562 146 89 4 2 143 294 435 8.81e-12 62.8
Msa0954550 MtrunA17_Chr8g0370111 36.752 117 74 0 21 137 330 446 2.94e-16 75.9
Msa0954550 MtrunA17_Chr8g0370111 35.593 118 76 0 20 137 306 423 3.72e-15 72.8
Msa0954550 MtrunA17_Chr8g0370111 32.847 137 90 1 7 141 245 381 5.68e-13 66.2
Msa0954550 MtrunA17_Chr8g0370111 30.370 135 89 2 2 134 337 468 3.19e-12 64.3
Msa0954550 MtrunA17_Chr5g0407461 36.765 136 83 1 2 137 302 434 3.66e-16 75.5
Msa0954550 MtrunA17_Chr5g0407461 35.772 123 78 1 21 142 341 463 1.18e-14 71.2
Msa0954550 MtrunA17_Chr5g0407461 28.800 125 86 2 12 134 262 385 7.98e-14 68.9
Msa0954550 MtrunA17_Chr5g0407461 33.051 118 79 0 22 139 296 413 1.35e-13 68.2
Msa0954550 MtrunA17_Chr5g0407461 28.058 139 97 2 20 156 363 500 3.12e-12 64.3
Msa0954550 MtrunA17_Chr5g0407461 30.159 126 86 1 20 143 409 534 3.74e-11 61.2
Msa0954550 MtrunA17_Chr2g0317831 32.886 149 93 2 2 148 48 191 1.41e-15 73.9
Msa0954550 MtrunA17_Chr4g0054721 35.938 128 81 1 21 147 235 362 6.30e-14 68.9
Msa0954550 MtrunA17_Chr4g0054721 35.897 117 73 1 20 134 303 419 4.64e-13 66.6
Msa0954550 MtrunA17_Chr4g0054721 29.167 144 99 2 13 154 202 344 4.20e-12 63.9
Msa0954550 MtrunA17_Chr4g0054721 35.652 115 74 0 20 134 280 394 8.83e-12 62.8
Msa0954550 MtrunA17_Chr4g0054721 32.353 136 89 1 2 137 242 374 9.53e-12 62.8
Msa0954550 MtrunA17_Chr4g0052921 38.961 154 89 5 9 158 378 530 7.15e-14 69.3
Msa0954550 MtrunA17_Chr5g0447001 31.690 142 93 4 21 158 243 384 1.17e-13 68.6
Msa0954550 MtrunA17_Chr3g0144581 35.000 140 86 5 24 159 124 262 1.06e-12 65.9
Msa0954550 MtrunA17_Chr4g0051961 37.419 155 90 7 9 158 321 473 1.09e-12 65.9
Msa0954550 MtrunA17_Chr5g0412701 35.294 136 86 2 20 154 167 301 1.76e-12 64.7
Msa0954550 MtrunA17_Chr5g0412701 37.288 118 68 2 23 134 259 376 2.43e-12 64.3
Msa0954550 MtrunA17_Chr7g0218991 34.868 152 93 5 2 149 137 286 2.60e-12 64.7
Msa0954550 MtrunA17_Chr7g0237821 34.568 162 94 7 12 162 317 477 4.60e-12 63.9
Msa0954550 MtrunA17_Chr7g0237821 33.333 147 69 5 20 137 211 357 5.46e-12 63.5
Msa0954550 MtrunA17_Chr7g0237821 29.936 157 103 5 7 158 127 281 5.06e-11 60.8
Msa0954550 MtrunA17_Chr7g0257621 32.164 171 108 7 2 167 208 375 6.77e-12 63.2
Msa0954550 MtrunA17_Chr2g0296591 32.680 153 100 3 9 158 366 518 8.79e-12 63.2
Msa0954550 MtrunA17_Chr2g0296601 32.680 153 100 3 9 158 366 518 1.56e-11 62.4
Msa0954550 MtrunA17_Chr3g0129391 35.099 151 94 4 22 168 434 584 5.23e-11 60.8
Msa0954550 MtrunA17_Chr4g0058861 35.507 138 85 4 25 158 387 524 5.41e-11 60.8
Msa0954550 MtrunA17_Chr1g0201241 35.976 164 96 9 1 158 93 253 6.84e-11 60.5
Msa0954550 MtrunA17_Chr7g0232171 37.226 137 77 7 22 153 302 434 9.99e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0954550 AT2G30105.1 60.209 191 71 1 2 187 178 368 3.37e-76 233
Msa0954550 AT5G07910.1 39.264 163 94 1 22 179 87 249 3.71e-24 95.9
Msa0954550 AT3G26500.1 38.235 136 82 2 20 154 177 311 1.03e-17 80.5
Msa0954550 AT3G26500.1 29.897 194 116 7 2 181 231 418 8.74e-12 63.2
Msa0954550 AT3G11330.1 36.029 136 85 2 20 154 215 349 4.95e-17 78.6
Msa0954550 AT3G15410.1 34.848 132 83 1 2 133 47 175 3.15e-16 76.3
Msa0954550 AT3G15410.1 37.226 137 83 2 20 155 154 288 2.28e-14 70.9
Msa0954550 AT3G15410.2 34.848 132 83 1 2 133 53 181 3.45e-16 76.3
Msa0954550 AT3G15410.2 37.226 137 83 2 20 155 160 294 2.09e-14 70.9
Msa0954550 AT1G12970.1 36.029 136 85 2 20 154 178 312 8.60e-16 74.7
Msa0954550 AT4G35470.2 37.681 138 79 3 2 137 271 403 1.36e-15 74.3
Msa0954550 AT4G35470.2 37.398 123 76 1 21 142 310 432 6.30e-15 72.4
Msa0954550 AT4G35470.2 31.210 157 102 3 2 156 317 469 4.65e-13 67.0
Msa0954550 AT4G35470.2 33.846 130 84 1 7 134 225 354 2.59e-12 64.7
Msa0954550 AT4G35470.2 33.051 118 79 0 22 139 265 382 2.66e-12 64.7
Msa0954550 AT4G35470.1 37.681 138 79 3 2 137 271 403 2.17e-15 73.9
Msa0954550 AT4G35470.1 37.398 123 76 1 21 142 310 432 8.04e-15 72.0
Msa0954550 AT4G35470.1 31.210 157 102 3 2 156 317 469 5.34e-13 67.0
Msa0954550 AT4G35470.1 33.846 130 84 1 7 134 225 354 3.70e-12 64.3
Msa0954550 AT4G35470.1 33.051 118 79 0 22 139 265 382 4.23e-12 64.3
Msa0954550 AT2G17440.1 36.283 113 72 0 25 137 298 410 2.72e-15 73.6
Msa0954550 AT2G17440.1 29.677 155 103 3 2 154 301 451 3.39e-12 64.3
Msa0954550 AT2G17440.1 35.156 128 79 1 22 149 249 372 4.14e-12 64.3
Msa0954550 AT2G17440.1 29.851 134 92 1 20 151 362 495 1.63e-11 62.4
Msa0954550 AT2G17440.1 34.314 102 67 0 36 137 286 387 1.68e-11 62.4
Msa0954550 AT2G17440.1 32.800 125 81 2 12 134 215 338 7.13e-11 60.5
Msa0954550 AT5G44700.1 37.500 160 93 7 4 158 364 521 3.58e-14 70.5
Msa0954550 AT5G05850.1 35.294 136 86 2 20 154 221 355 5.68e-14 69.7
Msa0954550 AT5G05850.1 34.906 106 67 1 36 139 330 435 5.89e-11 60.8
Msa0954550 AT4G20140.1 41.290 155 84 7 9 158 368 520 1.01e-13 68.9
Msa0954550 AT2G19330.1 35.374 147 87 4 2 144 155 297 9.95e-13 65.9
Msa0954550 AT2G19330.1 35.398 113 71 2 24 134 81 193 5.59e-11 60.8
Msa0954550 AT4G26050.1 32.192 146 91 3 2 143 152 293 1.16e-11 62.8
Msa0954550 AT4G29880.1 34.375 128 79 4 24 148 74 199 1.31e-11 62.8
Msa0954550 AT5G27060.3 35.200 125 74 5 11 128 175 299 1.38e-11 62.8
Msa0954550 AT5G27060.1 35.200 125 74 5 11 128 175 299 1.38e-11 62.8
Msa0954550 AT5G27060.2 35.200 125 74 5 11 128 176 300 1.38e-11 62.8
Msa0954550 AT5G07280.1 37.419 155 86 8 2 149 426 576 1.61e-11 62.8
Msa0954550 AT5G56040.2 30.282 142 95 4 21 158 236 377 1.73e-11 62.8
Msa0954550 AT5G56040.1 30.282 142 95 4 21 158 236 377 2.29e-11 62.4
Msa0954550 AT3G56370.1 31.818 154 99 6 20 168 209 361 2.31e-11 62.4
Msa0954550 AT4G26540.1 27.568 185 105 5 2 158 191 374 4.53e-11 61.2
Msa0954550 AT1G72180.1 33.083 133 82 6 28 155 436 566 5.94e-11 60.8

Find 34 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGGCCTTCCTGATGAAAT+AGG 0.235623 6_3:-55569769 Msa0954550:CDS
TGTTGGATGAATCAATTAAC+TGG 0.277999 6_3:-55570010 Msa0954550:CDS
AGTAAAATCAGTGAATTTAT+AGG 0.289858 6_3:-55569464 Msa0954550:CDS
AAGGCCAGCCAATTGATTAT+TGG 0.315782 6_3:+55569783 None:intergenic
TCTTGAAAGCCAACAATAAT+AGG 0.326003 6_3:-55569726 Msa0954550:intron
TTCATTGTACCTATTATTGT+TGG 0.358586 6_3:+55569717 None:intergenic
ATCACGTAACTCACCGGTTC+TGG 0.364497 6_3:+55569943 None:intergenic
TATTAATTCTAATAACTTGT+TGG 0.379499 6_3:-55570027 Msa0954550:CDS
GTAAAATCAGTGAATTTATA+GGG 0.387035 6_3:-55569463 Msa0954550:CDS
ACTACTTTGCCATCTGCGTT+GGG 0.404610 6_3:-55569838 Msa0954550:CDS
CAATAGTTATTTCTGTATCA+TGG 0.413644 6_3:+55568246 None:intergenic
AACTACTTTGCCATCTGCGT+TGG 0.415383 6_3:-55569839 Msa0954550:CDS
GTCAGATGCCCTATTTCATC+AGG 0.417982 6_3:+55569760 None:intergenic
CTGGCCTTCCTGATGAAATA+GGG 0.434149 6_3:-55569768 Msa0954550:CDS
TTGCTTGCAGCTTTCCACCT+TGG 0.442166 6_3:-55568273 Msa0954550:CDS
AACTATTGATATTCTTCGCC+AGG 0.442536 6_3:-55568231 Msa0954550:CDS
TACTATCATTGAACCAGAAC+CGG 0.446260 6_3:-55569956 Msa0954550:intron
GCATGTCTCCAATAATCAAT+TGG 0.450762 6_3:-55569791 Msa0954550:CDS
TGGGATCGATAACCTCTTTG+AGG 0.453759 6_3:-55569819 Msa0954550:CDS
GGTTCAATGATAGTACTGTT+AGG 0.458087 6_3:+55569964 None:intergenic
CTAAAACTACTGAATGTCTC+TGG 0.466762 6_3:+55569234 None:intergenic
CTTTGCATCTTAGTAACAAT+GGG 0.467481 6_3:-55568328 Msa0954550:CDS
GGGATCGATAACCTCTTTGA+GGG 0.505620 6_3:-55569818 Msa0954550:CDS
GTCTCCAATAATCAATTGGC+TGG 0.520232 6_3:-55569787 Msa0954550:CDS
GCTTTGCATCTTAGTAACAA+TGG 0.556237 6_3:-55568329 Msa0954550:CDS
GAAATGTCGTTCTCTTGTTG+AGG 0.569964 6_3:-55569441 Msa0954550:intron
AAACAAATAGAATTCCGAGT+TGG 0.580256 6_3:-55568043 Msa0954550:CDS
TTCTGTATCATGGAGATCCA+AGG 0.581361 6_3:+55568256 None:intergenic
GTTATCGATCCCAACGCAGA+TGG 0.592731 6_3:+55569829 None:intergenic
GTTGGATGAATCAATTAACT+GGG 0.623225 6_3:-55570009 Msa0954550:CDS
GATGCCCTATTTCATCAGGA+AGG 0.628283 6_3:+55569764 None:intergenic
AATCTCTAGAAACTCCAACT+CGG 0.645232 6_3:+55568029 None:intergenic
GACATGCAGCTCCCTCAAAG+AGG 0.667609 6_3:+55569807 None:intergenic
TGTATCATGGAGATCCAAGG+TGG 0.690823 6_3:+55568259 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATAATATATCTTCTTT+TGG + chr6_3:55569256-55569275 None:intergenic 10.0%
!!! TATTTTTTTTTTTGCATTTT+CGG - chr6_3:55569269-55569288 Msa0954550:CDS 10.0%
!!! AAAAATAATATATCTTCTTT+TGG + chr6_3:55569256-55569275 None:intergenic 10.0%
!!! TATTTTTTTTTTTGCATTTT+CGG - chr6_3:55569269-55569288 Msa0954550:CDS 10.0%
!!! TATTAATTCTAATAACTTGT+TGG - chr6_3:55568038-55568057 Msa0954550:CDS 15.0%
!! ATTTCACTTATGATTTAATT+TGG + chr6_3:55568721-55568740 None:intergenic 15.0%
!!! TTGTAATTTTGAAAAATTTG+AGG + chr6_3:55568985-55569004 None:intergenic 15.0%
!!! TATTAATTCTAATAACTTGT+TGG - chr6_3:55568038-55568057 Msa0954550:CDS 15.0%
!! ATTTCACTTATGATTTAATT+TGG + chr6_3:55568721-55568740 None:intergenic 15.0%
!!! TTGTAATTTTGAAAAATTTG+AGG + chr6_3:55568985-55569004 None:intergenic 15.0%
!! TAATGCTAATAAGTTTACAT+AGG - chr6_3:55568445-55568464 Msa0954550:intron 20.0%
!! AGTAAAATCAGTGAATTTAT+AGG - chr6_3:55568601-55568620 Msa0954550:intron 20.0%
!! GTAAAATCAGTGAATTTATA+GGG - chr6_3:55568602-55568621 Msa0954550:intron 20.0%
!!! GCTTATCAATTTTTTTTTTG+TGG - chr6_3:55568770-55568789 Msa0954550:intron 20.0%
!!! TACAAATCGAAATTTTATCT+TGG - chr6_3:55569060-55569079 Msa0954550:intron 20.0%
!!! ACAAATCGAAATTTTATCTT+GGG - chr6_3:55569061-55569080 Msa0954550:intron 20.0%
!!! ATAAGATGTTACTTTTGATT+CGG - chr6_3:55569087-55569106 Msa0954550:intron 20.0%
!! TTCATTAAAACTTACTTGTT+TGG - chr6_3:55569128-55569147 Msa0954550:intron 20.0%
!! TCATTAAAACTTACTTGTTT+GGG - chr6_3:55569129-55569148 Msa0954550:intron 20.0%
!! TTGAGAACAAATATAACTAA+GGG + chr6_3:55569196-55569215 None:intergenic 20.0%
!! TTTGAGAACAAATATAACTA+AGG + chr6_3:55569197-55569216 None:intergenic 20.0%
!! TACATTCAATATTACACTAA+TGG - chr6_3:55569449-55569468 Msa0954550:CDS 20.0%
!!! AATTTACTTTTGAGAAATTG+AGG - chr6_3:55569498-55569517 Msa0954550:intron 20.0%
!!! AAGTATTGCATTTTAATTGA+CGG - chr6_3:55569894-55569913 Msa0954550:intron 20.0%
!! TAATGCTAATAAGTTTACAT+AGG - chr6_3:55568445-55568464 Msa0954550:intron 20.0%
!! AGTAAAATCAGTGAATTTAT+AGG - chr6_3:55568601-55568620 Msa0954550:intron 20.0%
!! GTAAAATCAGTGAATTTATA+GGG - chr6_3:55568602-55568621 Msa0954550:intron 20.0%
!!! GCTTATCAATTTTTTTTTTG+TGG - chr6_3:55568770-55568789 Msa0954550:intron 20.0%
!!! TACAAATCGAAATTTTATCT+TGG - chr6_3:55569060-55569079 Msa0954550:intron 20.0%
!!! ACAAATCGAAATTTTATCTT+GGG - chr6_3:55569061-55569080 Msa0954550:intron 20.0%
!!! ATAAGATGTTACTTTTGATT+CGG - chr6_3:55569087-55569106 Msa0954550:intron 20.0%
!! TTCATTAAAACTTACTTGTT+TGG - chr6_3:55569128-55569147 Msa0954550:intron 20.0%
!! TCATTAAAACTTACTTGTTT+GGG - chr6_3:55569129-55569148 Msa0954550:intron 20.0%
!! TTGAGAACAAATATAACTAA+GGG + chr6_3:55569196-55569215 None:intergenic 20.0%
!! TTTGAGAACAAATATAACTA+AGG + chr6_3:55569197-55569216 None:intergenic 20.0%
!! TACATTCAATATTACACTAA+TGG - chr6_3:55569449-55569468 Msa0954550:CDS 20.0%
!!! AATTTACTTTTGAGAAATTG+AGG - chr6_3:55569498-55569517 Msa0954550:intron 20.0%
!!! AAGTATTGCATTTTAATTGA+CGG - chr6_3:55569894-55569913 Msa0954550:intron 20.0%
! TTCATTGTACCTATTATTGT+TGG + chr6_3:55568351-55568370 None:intergenic 25.0%
! AACTTATTAGCATTAGACAT+TGG + chr6_3:55568440-55568459 None:intergenic 25.0%
!!! TTTTGATAATAACCACTAAG+TGG - chr6_3:55568522-55568541 Msa0954550:intron 25.0%
!! ACTAAGAAACTTTCTGAAAA+AGG + chr6_3:55568682-55568701 None:intergenic 25.0%
!!! TTTTTCAGAAAGTTTCTTAG+TGG - chr6_3:55568681-55568700 Msa0954550:intron 25.0%
!! AATGGTTTAAAACCAATCTT+GGG + chr6_3:55568927-55568946 None:intergenic 25.0%
!! TAATGGTTTAAAACCAATCT+TGG + chr6_3:55568928-55568947 None:intergenic 25.0%
!! ACCATTATTCTGAAAGTAAA+CGG - chr6_3:55568941-55568960 Msa0954550:intron 25.0%
!! CAAAAGGTACATTTGAATTA+GGG + chr6_3:55569169-55569188 None:intergenic 25.0%
!! ACAAAAGGTACATTTGAATT+AGG + chr6_3:55569170-55569189 None:intergenic 25.0%
! CTTCACTCATTAGATTTAAA+GGG + chr6_3:55569423-55569442 None:intergenic 25.0%
! ACTTCACTCATTAGATTTAA+AGG + chr6_3:55569424-55569443 None:intergenic 25.0%
! ATTCAATATTACACTAATGG+TGG - chr6_3:55569452-55569471 Msa0954550:CDS 25.0%
! AACAAATTTGTATCAGTGAT+AGG - chr6_3:55569523-55569542 Msa0954550:intron 25.0%
! ACAAATTTGTATCAGTGATA+GGG - chr6_3:55569524-55569543 Msa0954550:intron 25.0%
!!! CAATAGTTATTTCTGTATCA+TGG + chr6_3:55569822-55569841 None:intergenic 25.0%
! GAAAGACAATACAAAAACTA+AGG + chr6_3:55569866-55569885 None:intergenic 25.0%
!! TTTTCTTTCAATTTGAAGGA+TGG - chr6_3:55569963-55569982 Msa0954550:CDS 25.0%
! TTTCTTTCAATTTGAAGGAT+GGG - chr6_3:55569964-55569983 Msa0954550:CDS 25.0%
! TTCATTGTACCTATTATTGT+TGG + chr6_3:55568351-55568370 None:intergenic 25.0%
! AACTTATTAGCATTAGACAT+TGG + chr6_3:55568440-55568459 None:intergenic 25.0%
!!! TTTTGATAATAACCACTAAG+TGG - chr6_3:55568522-55568541 Msa0954550:intron 25.0%
!! ACTAAGAAACTTTCTGAAAA+AGG + chr6_3:55568682-55568701 None:intergenic 25.0%
!!! TTTTTCAGAAAGTTTCTTAG+TGG - chr6_3:55568681-55568700 Msa0954550:intron 25.0%
!! AATGGTTTAAAACCAATCTT+GGG + chr6_3:55568927-55568946 None:intergenic 25.0%
!! TAATGGTTTAAAACCAATCT+TGG + chr6_3:55568928-55568947 None:intergenic 25.0%
!! ACCATTATTCTGAAAGTAAA+CGG - chr6_3:55568941-55568960 Msa0954550:intron 25.0%
!! CAAAAGGTACATTTGAATTA+GGG + chr6_3:55569169-55569188 None:intergenic 25.0%
!! ACAAAAGGTACATTTGAATT+AGG + chr6_3:55569170-55569189 None:intergenic 25.0%
! CTTCACTCATTAGATTTAAA+GGG + chr6_3:55569423-55569442 None:intergenic 25.0%
! ACTTCACTCATTAGATTTAA+AGG + chr6_3:55569424-55569443 None:intergenic 25.0%
! ATTCAATATTACACTAATGG+TGG - chr6_3:55569452-55569471 Msa0954550:CDS 25.0%
! AACAAATTTGTATCAGTGAT+AGG - chr6_3:55569523-55569542 Msa0954550:intron 25.0%
! ACAAATTTGTATCAGTGATA+GGG - chr6_3:55569524-55569543 Msa0954550:intron 25.0%
!!! CAATAGTTATTTCTGTATCA+TGG + chr6_3:55569822-55569841 None:intergenic 25.0%
! GAAAGACAATACAAAAACTA+AGG + chr6_3:55569866-55569885 None:intergenic 25.0%
!! TTTTCTTTCAATTTGAAGGA+TGG - chr6_3:55569963-55569982 Msa0954550:CDS 25.0%
! TTTCTTTCAATTTGAAGGAT+GGG - chr6_3:55569964-55569983 Msa0954550:CDS 25.0%
TGTTGGATGAATCAATTAAC+TGG - chr6_3:55568055-55568074 Msa0954550:CDS 30.0%
GTTGGATGAATCAATTAACT+GGG - chr6_3:55568056-55568075 Msa0954550:CDS 30.0%
TATATAATCACGTAACTCAC+CGG + chr6_3:55568131-55568150 None:intergenic 30.0%
TCTGAGAGTTAAACAAAAAC+AGG + chr6_3:55568180-55568199 None:intergenic 30.0%
TCTTGAAAGCCAACAATAAT+AGG - chr6_3:55568339-55568358 Msa0954550:intron 30.0%
ATCAAAAAATTCTCTGCATG+AGG + chr6_3:55568509-55568528 None:intergenic 30.0%
! TAATCTCTTTTTCTTAGACG+AGG - chr6_3:55568743-55568762 Msa0954550:intron 30.0%
!!! CAATTTTTTTTTTGTGGAGC+AGG - chr6_3:55568776-55568795 Msa0954550:intron 30.0%
!!! CAGTAGTTTTAGCAATTTGA+AGG - chr6_3:55568842-55568861 Msa0954550:intron 30.0%
TTCAATTGTCTTTCCTGATT+AGG + chr6_3:55568886-55568905 None:intergenic 30.0%
TAATCAGGAAAGACAATTGA+AGG - chr6_3:55568885-55568904 Msa0954550:intron 30.0%
ACCGTTTACTTTCAGAATAA+TGG + chr6_3:55568945-55568964 None:intergenic 30.0%
TATAACTAAGGGAAGACAAA+AGG + chr6_3:55569185-55569204 None:intergenic 30.0%
! CTTAGAGTAAACAGTGATTT+TGG + chr6_3:55569338-55569357 None:intergenic 30.0%
AAATTTGTATGAGCAAGCAA+GGG + chr6_3:55569483-55569502 None:intergenic 30.0%
TAAATTTGTATGAGCAAGCA+AGG + chr6_3:55569484-55569503 None:intergenic 30.0%
!! GCTAGTATCTGAGATATTTT+TGG - chr6_3:55569583-55569602 Msa0954550:intron 30.0%
ATCACATGCTCAAAGTAAAA+TGG - chr6_3:55569647-55569666 Msa0954550:intron 30.0%
! GCAAGAAAAGTTAGCATTTT+TGG + chr6_3:55569685-55569704 None:intergenic 30.0%
CTTTGCATCTTAGTAACAAT+GGG - chr6_3:55569737-55569756 Msa0954550:CDS 30.0%
!!! CAAGTCTTGAATAGTTTTGA+TGG + chr6_3:55569775-55569794 None:intergenic 30.0%
GGCTTATCATAGTTATTCAT+TGG - chr6_3:55569915-55569934 Msa0954550:intron 30.0%
CATGACAGCAAAATATATGT+GGG - chr6_3:55569940-55569959 Msa0954550:intron 30.0%
! TGGGTTTTCTTTCAATTTGA+AGG - chr6_3:55569959-55569978 Msa0954550:CDS 30.0%
AAACAAATAGAATTCCGAGT+TGG - chr6_3:55570022-55570041 Msa0954550:CDS 30.0%
TGTTGGATGAATCAATTAAC+TGG - chr6_3:55568055-55568074 Msa0954550:CDS 30.0%
GTTGGATGAATCAATTAACT+GGG - chr6_3:55568056-55568075 Msa0954550:CDS 30.0%
TATATAATCACGTAACTCAC+CGG + chr6_3:55568131-55568150 None:intergenic 30.0%
TCTGAGAGTTAAACAAAAAC+AGG + chr6_3:55568180-55568199 None:intergenic 30.0%
TCTTGAAAGCCAACAATAAT+AGG - chr6_3:55568339-55568358 Msa0954550:intron 30.0%
ATCAAAAAATTCTCTGCATG+AGG + chr6_3:55568509-55568528 None:intergenic 30.0%
! TAATCTCTTTTTCTTAGACG+AGG - chr6_3:55568743-55568762 Msa0954550:intron 30.0%
!!! CAATTTTTTTTTTGTGGAGC+AGG - chr6_3:55568776-55568795 Msa0954550:intron 30.0%
!!! CAGTAGTTTTAGCAATTTGA+AGG - chr6_3:55568842-55568861 Msa0954550:intron 30.0%
TTCAATTGTCTTTCCTGATT+AGG + chr6_3:55568886-55568905 None:intergenic 30.0%
TAATCAGGAAAGACAATTGA+AGG - chr6_3:55568885-55568904 Msa0954550:intron 30.0%
ACCGTTTACTTTCAGAATAA+TGG + chr6_3:55568945-55568964 None:intergenic 30.0%
TATAACTAAGGGAAGACAAA+AGG + chr6_3:55569185-55569204 None:intergenic 30.0%
! CTTAGAGTAAACAGTGATTT+TGG + chr6_3:55569338-55569357 None:intergenic 30.0%
AAATTTGTATGAGCAAGCAA+GGG + chr6_3:55569483-55569502 None:intergenic 30.0%
TAAATTTGTATGAGCAAGCA+AGG + chr6_3:55569484-55569503 None:intergenic 30.0%
!! GCTAGTATCTGAGATATTTT+TGG - chr6_3:55569583-55569602 Msa0954550:intron 30.0%
ATCACATGCTCAAAGTAAAA+TGG - chr6_3:55569647-55569666 Msa0954550:intron 30.0%
! GCAAGAAAAGTTAGCATTTT+TGG + chr6_3:55569685-55569704 None:intergenic 30.0%
CTTTGCATCTTAGTAACAAT+GGG - chr6_3:55569737-55569756 Msa0954550:CDS 30.0%
!!! CAAGTCTTGAATAGTTTTGA+TGG + chr6_3:55569775-55569794 None:intergenic 30.0%
GGCTTATCATAGTTATTCAT+TGG - chr6_3:55569915-55569934 Msa0954550:intron 30.0%
CATGACAGCAAAATATATGT+GGG - chr6_3:55569940-55569959 Msa0954550:intron 30.0%
! TGGGTTTTCTTTCAATTTGA+AGG - chr6_3:55569959-55569978 Msa0954550:CDS 30.0%
AAACAAATAGAATTCCGAGT+TGG - chr6_3:55570022-55570041 Msa0954550:CDS 30.0%
GGTTCAATGATAGTACTGTT+AGG + chr6_3:55568104-55568123 None:intergenic 35.0%
TACTATCATTGAACCAGAAC+CGG - chr6_3:55568109-55568128 Msa0954550:intron 35.0%
GCATGTCTCCAATAATCAAT+TGG - chr6_3:55568274-55568293 Msa0954550:CDS 35.0%
TTGATGTGTCTATCTTTCTC+AGG - chr6_3:55568575-55568594 Msa0954550:intron 35.0%
CTAAAACTACTGAATGTCTC+TGG + chr6_3:55568834-55568853 None:intergenic 35.0%
TGTTTCCTTATCACCTAATC+AGG - chr6_3:55568870-55568889 Msa0954550:intron 35.0%
TCTTTCCTGATTAGGTGATA+AGG + chr6_3:55568878-55568897 None:intergenic 35.0%
! TTTCTTTTTCCACCCAAGAT+TGG - chr6_3:55568912-55568931 Msa0954550:intron 35.0%
GTACATTTGAATTAGGGCAA+TGG + chr6_3:55569163-55569182 None:intergenic 35.0%
! TTTTGGTCCCTAAATATGCA+AGG + chr6_3:55569321-55569340 None:intergenic 35.0%
CTGAAGAGAAGATGAGATAA+AGG + chr6_3:55569386-55569405 None:intergenic 35.0%
GCTTTGCATCTTAGTAACAA+TGG - chr6_3:55569736-55569755 Msa0954550:CDS 35.0%
AACTATTGATATTCTTCGCC+AGG - chr6_3:55569834-55569853 Msa0954550:CDS 35.0%
GCATGACAGCAAAATATATG+TGG - chr6_3:55569939-55569958 Msa0954550:intron 35.0%
! AATCTCTAGAAACTCCAACT+CGG + chr6_3:55570039-55570058 None:intergenic 35.0%
GGTTCAATGATAGTACTGTT+AGG + chr6_3:55568104-55568123 None:intergenic 35.0%
TACTATCATTGAACCAGAAC+CGG - chr6_3:55568109-55568128 Msa0954550:intron 35.0%
GCATGTCTCCAATAATCAAT+TGG - chr6_3:55568274-55568293 Msa0954550:CDS 35.0%
TTGATGTGTCTATCTTTCTC+AGG - chr6_3:55568575-55568594 Msa0954550:intron 35.0%
CTAAAACTACTGAATGTCTC+TGG + chr6_3:55568834-55568853 None:intergenic 35.0%
TGTTTCCTTATCACCTAATC+AGG - chr6_3:55568870-55568889 Msa0954550:intron 35.0%
TCTTTCCTGATTAGGTGATA+AGG + chr6_3:55568878-55568897 None:intergenic 35.0%
! TTTCTTTTTCCACCCAAGAT+TGG - chr6_3:55568912-55568931 Msa0954550:intron 35.0%
GTACATTTGAATTAGGGCAA+TGG + chr6_3:55569163-55569182 None:intergenic 35.0%
! TTTTGGTCCCTAAATATGCA+AGG + chr6_3:55569321-55569340 None:intergenic 35.0%
CTGAAGAGAAGATGAGATAA+AGG + chr6_3:55569386-55569405 None:intergenic 35.0%
GCTTTGCATCTTAGTAACAA+TGG - chr6_3:55569736-55569755 Msa0954550:CDS 35.0%
AACTATTGATATTCTTCGCC+AGG - chr6_3:55569834-55569853 Msa0954550:CDS 35.0%
GCATGACAGCAAAATATATG+TGG - chr6_3:55569939-55569958 Msa0954550:intron 35.0%
! AATCTCTAGAAACTCCAACT+CGG + chr6_3:55570039-55570058 None:intergenic 35.0%
AACTCTCAGAAAGCGACAAA+TGG - chr6_3:55568190-55568209 Msa0954550:intron 40.0%
GTCTCCAATAATCAATTGGC+TGG - chr6_3:55568278-55568297 Msa0954550:CDS 40.0%
AAGGCCAGCCAATTGATTAT+TGG + chr6_3:55568285-55568304 None:intergenic 40.0%
!!! ACCACTAAGTGGTGTTGTTT+TGG - chr6_3:55568533-55568552 Msa0954550:intron 40.0%
ACCAAAACAACACCACTTAG+TGG + chr6_3:55568537-55568556 None:intergenic 40.0%
GAAATGTCGTTCTCTTGTTG+AGG - chr6_3:55568624-55568643 Msa0954550:intron 40.0%
TCAGGAAAGACAATTGAAGG+TGG - chr6_3:55568888-55568907 Msa0954550:intron 40.0%
! GGTTTAAAACCAATCTTGGG+TGG + chr6_3:55568924-55568943 None:intergenic 40.0%
! TTTGCATTTTCGGTACACTC+AGG - chr6_3:55569279-55569298 Msa0954550:intron 40.0%
! TTGCATTTTCGGTACACTCA+GGG - chr6_3:55569280-55569299 Msa0954550:intron 40.0%
TGAAACCGCCTTGCATATTT+AGG - chr6_3:55569310-55569329 Msa0954550:intron 40.0%
GAAACCGCCTTGCATATTTA+GGG - chr6_3:55569311-55569330 Msa0954550:intron 40.0%
TCAGTGATAGGGAAAAGCAA+AGG - chr6_3:55569535-55569554 Msa0954550:intron 40.0%
GGTCACAAATGTGGAGTATA+AGG + chr6_3:55569707-55569726 None:intergenic 40.0%
CTGCATAATGGTCACAAATG+TGG + chr6_3:55569716-55569735 None:intergenic 40.0%
CACATTTGTGACCATTATGC+AGG - chr6_3:55569714-55569733 Msa0954550:intron 40.0%
AAGATGCAAAGCCTGCATAA+TGG + chr6_3:55569728-55569747 None:intergenic 40.0%
TTCTGTATCATGGAGATCCA+AGG + chr6_3:55569812-55569831 None:intergenic 40.0%
AACTCTCAGAAAGCGACAAA+TGG - chr6_3:55568190-55568209 Msa0954550:intron 40.0%
GTCTCCAATAATCAATTGGC+TGG - chr6_3:55568278-55568297 Msa0954550:CDS 40.0%
AAGGCCAGCCAATTGATTAT+TGG + chr6_3:55568285-55568304 None:intergenic 40.0%
!!! ACCACTAAGTGGTGTTGTTT+TGG - chr6_3:55568533-55568552 Msa0954550:intron 40.0%
ACCAAAACAACACCACTTAG+TGG + chr6_3:55568537-55568556 None:intergenic 40.0%
GAAATGTCGTTCTCTTGTTG+AGG - chr6_3:55568624-55568643 Msa0954550:intron 40.0%
TCAGGAAAGACAATTGAAGG+TGG - chr6_3:55568888-55568907 Msa0954550:intron 40.0%
! GGTTTAAAACCAATCTTGGG+TGG + chr6_3:55568924-55568943 None:intergenic 40.0%
! TTTGCATTTTCGGTACACTC+AGG - chr6_3:55569279-55569298 Msa0954550:intron 40.0%
! TTGCATTTTCGGTACACTCA+GGG - chr6_3:55569280-55569299 Msa0954550:intron 40.0%
TGAAACCGCCTTGCATATTT+AGG - chr6_3:55569310-55569329 Msa0954550:intron 40.0%
GAAACCGCCTTGCATATTTA+GGG - chr6_3:55569311-55569330 Msa0954550:intron 40.0%
TCAGTGATAGGGAAAAGCAA+AGG - chr6_3:55569535-55569554 Msa0954550:intron 40.0%
GGTCACAAATGTGGAGTATA+AGG + chr6_3:55569707-55569726 None:intergenic 40.0%
CTGCATAATGGTCACAAATG+TGG + chr6_3:55569716-55569735 None:intergenic 40.0%
CACATTTGTGACCATTATGC+AGG - chr6_3:55569714-55569733 Msa0954550:intron 40.0%
AAGATGCAAAGCCTGCATAA+TGG + chr6_3:55569728-55569747 None:intergenic 40.0%
TTCTGTATCATGGAGATCCA+AGG + chr6_3:55569812-55569831 None:intergenic 40.0%
AACTACTTTGCCATCTGCGT+TGG - chr6_3:55568226-55568245 Msa0954550:intron 45.0%
ACTACTTTGCCATCTGCGTT+GGG - chr6_3:55568227-55568246 Msa0954550:intron 45.0%
TGGGATCGATAACCTCTTTG+AGG - chr6_3:55568246-55568265 Msa0954550:CDS 45.0%
GGGATCGATAACCTCTTTGA+GGG - chr6_3:55568247-55568266 Msa0954550:CDS 45.0%
! CTGGCCTTCCTGATGAAATA+GGG - chr6_3:55568297-55568316 Msa0954550:CDS 45.0%
GATGCCCTATTTCATCAGGA+AGG + chr6_3:55568304-55568323 None:intergenic 45.0%
GTCAGATGCCCTATTTCATC+AGG + chr6_3:55568308-55568327 None:intergenic 45.0%
GTCGTTCTCTTGTTGAGGTA+TGG - chr6_3:55568629-55568648 Msa0954550:intron 45.0%
TTCCTTAACCTATGCCCTGA+GGG + chr6_3:55569038-55569057 None:intergenic 45.0%
ATTCCTTAACCTATGCCCTG+AGG + chr6_3:55569039-55569058 None:intergenic 45.0%
TGGTCCCTAAATATGCAAGG+CGG + chr6_3:55569318-55569337 None:intergenic 45.0%
TGTATCATGGAGATCCAAGG+TGG + chr6_3:55569809-55569828 None:intergenic 45.0%
CAAAAACTAAGGTGCACACC+TGG + chr6_3:55569855-55569874 None:intergenic 45.0%
AACTACTTTGCCATCTGCGT+TGG - chr6_3:55568226-55568245 Msa0954550:intron 45.0%
ACTACTTTGCCATCTGCGTT+GGG - chr6_3:55568227-55568246 Msa0954550:intron 45.0%
TGGGATCGATAACCTCTTTG+AGG - chr6_3:55568246-55568265 Msa0954550:CDS 45.0%
GGGATCGATAACCTCTTTGA+GGG - chr6_3:55568247-55568266 Msa0954550:CDS 45.0%
! CTGGCCTTCCTGATGAAATA+GGG - chr6_3:55568297-55568316 Msa0954550:CDS 45.0%
GATGCCCTATTTCATCAGGA+AGG + chr6_3:55568304-55568323 None:intergenic 45.0%
GTCAGATGCCCTATTTCATC+AGG + chr6_3:55568308-55568327 None:intergenic 45.0%
GTCGTTCTCTTGTTGAGGTA+TGG - chr6_3:55568629-55568648 Msa0954550:intron 45.0%
TTCCTTAACCTATGCCCTGA+GGG + chr6_3:55569038-55569057 None:intergenic 45.0%
ATTCCTTAACCTATGCCCTG+AGG + chr6_3:55569039-55569058 None:intergenic 45.0%
TGGTCCCTAAATATGCAAGG+CGG + chr6_3:55569318-55569337 None:intergenic 45.0%
TGTATCATGGAGATCCAAGG+TGG + chr6_3:55569809-55569828 None:intergenic 45.0%
CAAAAACTAAGGTGCACACC+TGG + chr6_3:55569855-55569874 None:intergenic 45.0%
!! ATCACGTAACTCACCGGTTC+TGG + chr6_3:55568125-55568144 None:intergenic 50.0%
GTTATCGATCCCAACGCAGA+TGG + chr6_3:55568239-55568258 None:intergenic 50.0%
!! GCTGGCCTTCCTGATGAAAT+AGG - chr6_3:55568296-55568315 Msa0954550:CDS 50.0%
GTGTCTTCGAGCAGTCACTT+TGG - chr6_3:55569218-55569237 Msa0954550:intron 50.0%
TTGCTTGCAGCTTTCCACCT+TGG - chr6_3:55569792-55569811 Msa0954550:CDS 50.0%
!! ATCACGTAACTCACCGGTTC+TGG + chr6_3:55568125-55568144 None:intergenic 50.0%
GTTATCGATCCCAACGCAGA+TGG + chr6_3:55568239-55568258 None:intergenic 50.0%
!! GCTGGCCTTCCTGATGAAAT+AGG - chr6_3:55568296-55568315 Msa0954550:CDS 50.0%
GTGTCTTCGAGCAGTCACTT+TGG - chr6_3:55569218-55569237 Msa0954550:intron 50.0%
TTGCTTGCAGCTTTCCACCT+TGG - chr6_3:55569792-55569811 Msa0954550:CDS 50.0%
GACATGCAGCTCCCTCAAAG+AGG + chr6_3:55568261-55568280 None:intergenic 55.0%
TCTTGCTAACCAGTGCCCTC+AGG - chr6_3:55569020-55569039 Msa0954550:intron 55.0%
CTTGCTAACCAGTGCCCTCA+GGG - chr6_3:55569021-55569040 Msa0954550:intron 55.0%
TGCCCTCAGGGCATAGGTTA+AGG - chr6_3:55569033-55569052 Msa0954550:intron 55.0%
GACATGCAGCTCCCTCAAAG+AGG + chr6_3:55568261-55568280 None:intergenic 55.0%
TCTTGCTAACCAGTGCCCTC+AGG - chr6_3:55569020-55569039 Msa0954550:intron 55.0%
CTTGCTAACCAGTGCCCTCA+GGG - chr6_3:55569021-55569040 Msa0954550:intron 55.0%
TGCCCTCAGGGCATAGGTTA+AGG - chr6_3:55569033-55569052 Msa0954550:intron 55.0%
AACCAGTGCCCTCAGGGCAT+AGG - chr6_3:55569027-55569046 Msa0954550:intron 60.0%
! AACCTATGCCCTGAGGGCAC+TGG + chr6_3:55569032-55569051 None:intergenic 60.0%
AACCAGTGCCCTCAGGGCAT+AGG - chr6_3:55569027-55569046 Msa0954550:intron 60.0%
! AACCTATGCCCTGAGGGCAC+TGG + chr6_3:55569032-55569051 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 55568021 55570066 55568021 ID=Msa0954550;Name=Msa0954550
chr6_3 mRNA 55568021 55570066 55568021 ID=Msa0954550-mRNA-1;Parent=Msa0954550;Name=Msa0954550-mRNA-1;_AED=0.27;_eAED=0.28;_QI=0|0|0|1|0.6|0.33|6|0|187
chr6_3 exon 55569957 55570066 55569957 ID=Msa0954550-mRNA-1:exon:11382;Parent=Msa0954550-mRNA-1
chr6_3 exon 55569727 55569864 55569727 ID=Msa0954550-mRNA-1:exon:11381;Parent=Msa0954550-mRNA-1
chr6_3 exon 55569442 55569490 55569442 ID=Msa0954550-mRNA-1:exon:11380;Parent=Msa0954550-mRNA-1
chr6_3 exon 55569224 55569289 55569224 ID=Msa0954550-mRNA-1:exon:11379;Parent=Msa0954550-mRNA-1
chr6_3 exon 55568230 55568351 55568230 ID=Msa0954550-mRNA-1:exon:11378;Parent=Msa0954550-mRNA-1
chr6_3 exon 55568021 55568096 55568021 ID=Msa0954550-mRNA-1:exon:11377;Parent=Msa0954550-mRNA-1
chr6_3 CDS 55569957 55570066 55569957 ID=Msa0954550-mRNA-1:cds;Parent=Msa0954550-mRNA-1
chr6_3 CDS 55569727 55569864 55569727 ID=Msa0954550-mRNA-1:cds;Parent=Msa0954550-mRNA-1
chr6_3 CDS 55569442 55569490 55569442 ID=Msa0954550-mRNA-1:cds;Parent=Msa0954550-mRNA-1
chr6_3 CDS 55569224 55569289 55569224 ID=Msa0954550-mRNA-1:cds;Parent=Msa0954550-mRNA-1
chr6_3 CDS 55568230 55568351 55568230 ID=Msa0954550-mRNA-1:cds;Parent=Msa0954550-mRNA-1
chr6_3 CDS 55568021 55568096 55568021 ID=Msa0954550-mRNA-1:cds;Parent=Msa0954550-mRNA-1
Gene Sequence

>Msa0954550

ATGTTGCAGAAACTATTTATTAATTCTAATAACTTGTTGGATGAATCAATTAACTGGGAAGCACTGTCAAATCTGAAGTACCTAACAGTACTATCATTGAACCAGAACCGTTTAACTACTTTGCCATCTGCGTTGGGATCGATAACCTCTTTGAGGGAGCTGCATGTCTCCAATAATCAATTGGCTGGCCTTCCTGATGAAATAGGGCATCTGACAAAGTTAGAAGTCTTGAAAGCCAACAATAATAGGATGAGTAAAATCAGTGAATTTATAGGGAAATGTCGTTCTCTTGTTGAGGTTGATTTCTCATTAAATTTTCTATCAGAGTTGCCAGAGACATTCAGTAGTTTTAGCAATTTGAAGGCTTTGCATCTTAGTAACAATGGGATGAAATCTCTGCCATCAAAACTATTCAAGACTTGCTTGCAGCTTTCCACCTTGGATCTCCATGATACAGAAATAACTATTGATATTCTTCGCCAGGTTTTTGATGAACGTCGTCGCTCAAAGCATCAGAAACAAATAGAATTCCGAGTTGGAGTTTCTAGAGATTTTGATGAA

Protein sequence

>Msa0954550

MLQKLFINSNNLLDESINWEALSNLKYLTVLSLNQNRLTTLPSALGSITSLRELHVSNNQLAGLPDEIGHLTKLEVLKANNNRMSKISEFIGKCRSLVEVDFSLNFLSELPETFSSFSNLKALHLSNNGMKSLPSKLFKTCLQLSTLDLHDTEITIDILRQVFDERRRSKHQKQIEFRVGVSRDFDE