AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0891040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0891040 MtrunA17_Chr6g0470981 95.915 612 25 0 1 612 1 612 0.0 1130
Msa0891040 MtrunA17_Chr3g0123611 39.759 581 314 11 1 551 1 575 2.20e-103 325
Msa0891040 MtrunA17_Chr7g0220541 37.411 564 319 9 16 570 10 548 1.36e-91 295
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0891040 AT1G68910.2 45.763 590 285 11 28 613 24 582 2.70e-143 428
Msa0891040 AT1G68910.3 45.763 590 285 11 28 613 24 582 2.70e-143 428
Msa0891040 AT1G68910.1 47.445 548 263 8 28 573 24 548 1.84e-141 425
Msa0891040 AT5G11390.1 39.647 623 324 11 15 593 25 639 5.16e-104 330

Find 117 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTATTTATCCACAATTAT+TGG 0.160536 6_1:-64275963 Msa0891040:five_prime_UTR
CATTTCTTGGACCTCTTTCT+TGG 0.161993 6_1:+64274136 None:intergenic
CTAAAGCTGCATCCATTTCT+TGG 0.199806 6_1:+64274123 None:intergenic
GAAGAGCTGAACTTTCTTAA+AGG 0.224825 6_1:-64272811 Msa0891040:CDS
GCAGTTACAACAACAGTTAT+TGG 0.246407 6_1:-64273697 Msa0891040:CDS
ACACTTCAATAAAACCTTTC+AGG 0.255369 6_1:-64271622 Msa0891040:CDS
TACCTTTCTATAAATGCTTC+TGG 0.258106 6_1:+64275803 None:intergenic
CAATGCTACCGAGGTGTTAA+TGG 0.262222 6_1:-64273247 Msa0891040:CDS
AACAAAGTTTATCATGGATT+TGG 0.269879 6_1:-64272437 Msa0891040:CDS
ATATGTTATACACAGCAATT+TGG 0.281088 6_1:-64272675 Msa0891040:CDS
AATATGTTTCTCCAATTTGT+AGG 0.281415 6_1:+64270581 None:intergenic
AATTGAAGAGCTAAAATCTA+AGG 0.296015 6_1:-64272638 Msa0891040:CDS
TGTTCTGTATATTTATCTAT+TGG 0.302396 6_1:-64273970 Msa0891040:CDS
ATACACAGCAATTTGGGATA+TGG 0.307575 6_1:-64272668 Msa0891040:CDS
GGGGATTTCGAAAAGTATAA+TGG 0.309555 6_1:-64273226 Msa0891040:CDS
AAGTTTGGTAGGGAAGTTAA+AGG 0.312595 6_1:-64271760 Msa0891040:CDS
CCAATAATTGTGGATAAATA+AGG 0.318806 6_1:+64275963 None:intergenic
AAGAAGCAGCAGAAGTTGTT+TGG 0.325223 6_1:-64273290 Msa0891040:CDS
ATCCATGATAAACTTTGTTC+TGG 0.336896 6_1:+64272441 None:intergenic
TACTGAGGTGTTGGATTTGA+GGG 0.336994 6_1:-64273043 Msa0891040:CDS
ATTCATATACACAGGGGAAA+TGG 0.346219 6_1:-64273529 Msa0891040:intron
TTTCTTGGTTCAGAAATTAG+AGG 0.348271 6_1:+64274151 None:intergenic
CCGATGATCTATTTCTGTTA+AGG 0.349046 6_1:+64274028 None:intergenic
AAAACAGGAAAATAAAAGTT+TGG 0.349494 6_1:-64271775 Msa0891040:CDS
ATTATCCAGAAAAGTCTATC+TGG 0.349668 6_1:+64275853 None:intergenic
AGAAGCAGCAGAAGTTGTTT+GGG 0.356426 6_1:-64273289 Msa0891040:CDS
TTGAGTTTGAATTTGAGTTC+TGG 0.359957 6_1:+64276093 None:intergenic
GGTGTTGGTCTTCTGCTTGT+TGG 0.361301 6_1:-64270525 Msa0891040:three_prime_UTR
CCAACTCTTTATGAAGTTCA+AGG 0.367171 6_1:+64272551 None:intergenic
TTCATATACACAGGGGAAAT+GGG 0.379165 6_1:-64273528 Msa0891040:intron
AATGCTACCGAGGTGTTAAT+GGG 0.379167 6_1:-64273246 Msa0891040:CDS
CAGCAAATAAGCCTACAAAT+TGG 0.383649 6_1:-64270592 Msa0891040:three_prime_UTR
AAGAGCTGAACTTTCTTAAA+GGG 0.392409 6_1:-64272810 Msa0891040:CDS
TATGTTATACACAGCAATTT+GGG 0.393418 6_1:-64272674 Msa0891040:CDS
ACCACTCATAAATAAACAAA+AGG 0.406487 6_1:+64275909 None:intergenic
TGAAGAGGAAGAAGTCAAAA+TGG 0.408481 6_1:+64275987 None:intergenic
CAAGAAAGAGGTCCAAGAAA+TGG 0.412409 6_1:-64274135 Msa0891040:exon
ATGCAAGCTCACCAGCTTCT+CGG 0.414426 6_1:+64273992 None:intergenic
ATGCCTTCGCATTCTGTAGT+TGG 0.418735 6_1:+64272725 None:intergenic
ATCACTCCAACGTACGGTTT+AGG 0.423933 6_1:+64276189 None:intergenic
GCTTTGCATGAAAACGTCAT+TGG 0.426440 6_1:-64272509 Msa0891040:CDS
GGGATTTCGAAAAGTATAAT+GGG 0.426529 6_1:-64273225 Msa0891040:CDS
TACCAGAACAAAGTTTATCA+TGG 0.428221 6_1:-64272443 Msa0891040:CDS
AAGTTAAAGGAGACTAAAAT+TGG 0.430349 6_1:-64271747 Msa0891040:CDS
TGAGGTTGAACTCAGTTACT+TGG 0.431369 6_1:+64273196 None:intergenic
TTCTATAAAATGTTCATGAC+AGG 0.431984 6_1:+64272945 None:intergenic
AAGGGAGCGCATTAATAAAC+AGG 0.433397 6_1:-64272395 Msa0891040:intron
TAACTGCTTCTTAGACTCTT+CGG 0.444785 6_1:+64273713 None:intergenic
ATGCTGCTTTAGAGAAGAAC+GGG 0.446606 6_1:-64273101 Msa0891040:CDS
CAGGAAAATAAAAGTTTGGT+AGG 0.448633 6_1:-64271771 Msa0891040:CDS
ATACTGAGGTGTTGGATTTG+AGG 0.449553 6_1:-64273044 Msa0891040:CDS
AACAGAGCTTGACAATTTCA+TGG 0.456939 6_1:-64273835 Msa0891040:CDS
CACCAGCTTCTCGGAAGAAT+AGG 0.460136 6_1:+64274001 None:intergenic
GCAAGGATATATCAAGATCT+TGG 0.461436 6_1:+64274054 None:intergenic
GTCCAGAAGCATTTATAGAA+AGG 0.461524 6_1:-64275805 Msa0891040:intron
GCAGCTAGATGCTTTAAAAC+AGG 0.463620 6_1:-64271790 Msa0891040:intron
GAAGAACAAAATTGAGAGAC+AGG 0.465629 6_1:+64276148 None:intergenic
ACAAAATCATTTGATGAAGA+AGG 0.480014 6_1:-64271651 Msa0891040:CDS
TATTTCTGTTAAGGCTTGCA+AGG 0.481548 6_1:+64274037 None:intergenic
ATCATTTGATGAAGAAGGAA+TGG 0.487382 6_1:-64271646 Msa0891040:CDS
AGCCTATTCTTCCGAGAAGC+TGG 0.487690 6_1:-64274003 Msa0891040:CDS
TCAACTTACAATTCTCATGT+TGG 0.490472 6_1:+64273628 None:intergenic
TCAGGAAAATACTGAGGTGT+TGG 0.490567 6_1:-64273052 Msa0891040:CDS
ATCATTGCTTGAGTCAATGT+TGG 0.490619 6_1:+64271680 None:intergenic
TTCAATAAAACCTTTCAGGC+AGG 0.495569 6_1:-64271618 Msa0891040:intron
AAAATTGGTGCATGCAACAA+TGG 0.496724 6_1:-64271732 Msa0891040:CDS
ATGATGTTTGATCTATTGTC+TGG 0.497409 6_1:-64273876 Msa0891040:CDS
TTTACTATGTGATGTTAGAG+TGG 0.512726 6_1:-64270316 Msa0891040:three_prime_UTR
AAATTGGTGCATGCAACAAT+GGG 0.516712 6_1:-64271731 Msa0891040:CDS
CTCGCTGCATATAACCGTTG+AGG 0.524764 6_1:+64273178 None:intergenic
TGCTTGAGAAGTCGCTCGCA+AGG 0.526338 6_1:-64273407 Msa0891040:CDS
GGTGTTGGATTTGAGGGAAA+AGG 0.526687 6_1:-64273037 Msa0891040:CDS
GCGAAGGCATCTTCTGAAGC+AGG 0.527456 6_1:-64272712 Msa0891040:CDS
CACTCTGTCTCCAATAATTG+TGG 0.528178 6_1:+64275953 None:intergenic
CCTTGAACTTCATAAAGAGT+TGG 0.539149 6_1:-64272551 Msa0891040:CDS
GTGGATAAATAAGGTTGAAG+AGG 0.543952 6_1:+64275972 None:intergenic
GAAGACCAACACCGAAACAA+GGG 0.549551 6_1:+64270535 None:intergenic
CTTAGAAAACTCATTTGAGA+AGG 0.549658 6_1:-64273901 Msa0891040:CDS
TGAGTGGTAGTTAAAAGACT+TGG 0.555312 6_1:-64275894 Msa0891040:five_prime_UTR
AGCTGAGAGTGCTGAAGCAA+AGG 0.555426 6_1:-64272869 Msa0891040:CDS
ATATACAATAAAGAATCTAA+AGG 0.557494 6_1:+64270384 None:intergenic
TAATGCAACTAGCCACTGAA+AGG 0.558691 6_1:-64272414 Msa0891040:CDS
ACAAACAACAAAATTTCGCT+AGG 0.562458 6_1:+64270454 None:intergenic
CCACTCATAAATAAACAAAA+GGG 0.562482 6_1:+64275910 None:intergenic
TTGAATTTGAGTTCTGGCAA+AGG 0.562673 6_1:+64276099 None:intergenic
TGTTAATGTTGACGATACTC+AGG 0.562953 6_1:-64273070 Msa0891040:CDS
TAATTTCTGAACCAAGAAAG+AGG 0.571749 6_1:-64274147 Msa0891040:five_prime_UTR
AGGAAAATAAAAGTTTGGTA+GGG 0.572153 6_1:-64271770 Msa0891040:CDS
AATGCAACTAGCCACTGAAA+GGG 0.573953 6_1:-64272413 Msa0891040:CDS
GAAATCGAAAGATCAGAGAA+TGG 0.579935 6_1:-64273457 Msa0891040:CDS
ATTAATGCGCTCCCTTTCAG+TGG 0.581326 6_1:+64272402 None:intergenic
AGAAGACCAACACCGAAACA+AGG 0.583522 6_1:+64270534 None:intergenic
CGAAATCCCCATTAACACCT+CGG 0.586371 6_1:+64273239 None:intergenic
ATACACAGGGGAAATGGGGA+AGG 0.589178 6_1:-64273523 Msa0891040:intron
ACTCCGCTACACTGAACAAG+TGG 0.600856 6_1:-64273325 Msa0891040:CDS
GAAGCAGCAGAAGTTGTTTG+GGG 0.601416 6_1:-64273288 Msa0891040:CDS
AGATCTATCACTCCAACGTA+CGG 0.601440 6_1:+64276183 None:intergenic
ACAGTTAACTGAAACGAACA+TGG 0.602578 6_1:-64272842 Msa0891040:CDS
TCTAAGGTTTCAAAAGCTGA+AGG 0.603452 6_1:-64272622 Msa0891040:CDS
GCAGCTTCAGAAAAGTCTTG+TGG 0.605005 6_1:-64273655 Msa0891040:CDS
TCATATACACAGGGGAAATG+GGG 0.609571 6_1:-64273527 Msa0891040:intron
GATGCTGCTTTAGAGAAGAA+CGG 0.611153 6_1:-64273102 Msa0891040:CDS
ACTCCAACGTACGGTTTAGG+TGG 0.615350 6_1:+64276192 None:intergenic
AAGACCAACACCGAAACAAG+GGG 0.623067 6_1:+64270536 None:intergenic
ATGCCACTTGTTCAGTGTAG+CGG 0.624346 6_1:+64273322 None:intergenic
GTAACTGAGTTCAACCTCAA+CGG 0.629441 6_1:-64273192 Msa0891040:CDS
CCTTAACAGAAATAGATCAT+CGG 0.629560 6_1:-64274028 Msa0891040:CDS
GTTCGCTTGAGAAGCAACTG+AGG 0.632474 6_1:-64272759 Msa0891040:CDS
TTCGCTTGAGAAGCAACTGA+GGG 0.639113 6_1:-64272758 Msa0891040:CDS
GCTTGAGAAGTCGCTCGCAA+GGG 0.645249 6_1:-64273406 Msa0891040:CDS
CAGCCACCTAAACCGTACGT+TGG 0.654960 6_1:-64276195 Msa0891040:five_prime_UTR
TATCCAACTACAGAATGCGA+AGG 0.657458 6_1:-64272728 Msa0891040:CDS
ATGCTACCGAGGTGTTAATG+GGG 0.669958 6_1:-64273245 Msa0891040:CDS
TGAAGCAGACAATGCTACCG+AGG 0.684617 6_1:-64273256 Msa0891040:CDS
GTCGTGCAGACATTTGACTG+AGG 0.706871 6_1:-64273769 Msa0891040:CDS
CGATACTCAGGAAAATACTG+AGG 0.718119 6_1:-64273058 Msa0891040:CDS
AGACCAACACCGAAACAAGG+GGG 0.733894 6_1:+64270537 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTGTTGTAATATTTT+TGG - chr6_1:64270861-64270880 Msa0891040:intron 10.0%
!!! AAAATTGTTGTAATATTTTT+GGG - chr6_1:64270862-64270881 Msa0891040:intron 10.0%
!!! ATACTTTTCTTAAAAAATTT+AGG + chr6_1:64275491-64275510 None:intergenic 10.0%
!!! ATAAATCTTTTTTATATTGT+CGG + chr6_1:64275628-64275647 None:intergenic 10.0%
!!! AAATTGTTGTAATATTTTTG+GGG - chr6_1:64270863-64270882 Msa0891040:intron 15.0%
!!! GCTAAATTTTATTAAAAACT+AGG - chr6_1:64271192-64271211 Msa0891040:intron 15.0%
!!! TTTTTTTCTTTTTTAATGCT+AGG - chr6_1:64271515-64271534 Msa0891040:intron 15.0%
!!! TTTTTTCTTTTTTAATGCTA+GGG - chr6_1:64271516-64271535 Msa0891040:intron 15.0%
!! AAAATAAGATAGAAATTAAG+TGG + chr6_1:64272301-64272320 None:intergenic 15.0%
!!! TTCTATGTTTTTATCTTTTA+TGG - chr6_1:64274136-64274155 Msa0891040:exon 15.0%
!!! TTTTCTTTTGAGAATAAAAA+TGG - chr6_1:64275149-64275168 Msa0891040:intron 15.0%
!! AAAAAGATTTATAACATGTT+TGG - chr6_1:64275636-64275655 Msa0891040:intron 15.0%
!! TATCATGTCTAATTTAAATT+GGG + chr6_1:64275690-64275709 None:intergenic 15.0%
!! ATATCATGTCTAATTTAAAT+TGG + chr6_1:64275691-64275710 None:intergenic 15.0%
!! TAATAATAGAAATCAAGAAA+GGG + chr6_1:64275831-64275850 None:intergenic 15.0%
!! ATATACAATAAAGAATCTAA+AGG + chr6_1:64276100-64276119 None:intergenic 15.0%
!! TGATAATTTGATGTTAACTT+TGG - chr6_1:64270725-64270744 Msa0891040:intron 20.0%
!!! TATAATTGATGGTTTTTTTG+TGG - chr6_1:64270892-64270911 Msa0891040:intron 20.0%
!!! TTATCTTTCATGTATTTCTA+AGG - chr6_1:64270915-64270934 Msa0891040:intron 20.0%
!! GGATTGTAATATGATATATA+TGG + chr6_1:64271374-64271393 None:intergenic 20.0%
!!! TTTTTCTTTTTTAATGCTAG+GGG - chr6_1:64271517-64271536 Msa0891040:intron 20.0%
!! AGTTAGTTAATACATTAGAT+TGG - chr6_1:64271579-64271598 Msa0891040:intron 20.0%
!!! ATAAAAAGTTGTTGTTGTAT+AGG + chr6_1:64271784-64271803 None:intergenic 20.0%
!! GATACCATCTTAAAAATAAA+TGG + chr6_1:64271847-64271866 None:intergenic 20.0%
!! TATTTAACGAATTCGTTTAT+GGG + chr6_1:64272153-64272172 None:intergenic 20.0%
!! TTATTTAACGAATTCGTTTA+TGG + chr6_1:64272154-64272173 None:intergenic 20.0%
!! TGTTCTGTATATTTATCTAT+TGG - chr6_1:64272511-64272530 Msa0891040:CDS 20.0%
!!! AATTTTAATCGAACAACTTA+AGG - chr6_1:64273351-64273370 Msa0891040:CDS 20.0%
!!! TGAATATTTTCAGTTCAATT+TGG + chr6_1:64274230-64274249 None:intergenic 20.0%
!! AATTGAACTGAAAATATTCA+AGG - chr6_1:64274230-64274249 Msa0891040:intron 20.0%
!!! ATTTTCACAGTTTCTTAATA+TGG + chr6_1:64274374-64274393 None:intergenic 20.0%
!! AAAACAGGAAAATAAAAGTT+TGG - chr6_1:64274706-64274725 Msa0891040:intron 20.0%
!! CATAATATCAACTAGTTAAA+AGG + chr6_1:64274910-64274929 None:intergenic 20.0%
!!! TTAACTAGTTGATATTATGT+TGG - chr6_1:64274911-64274930 Msa0891040:intron 20.0%
!! AAGAAAAGAACATAAAAACA+TGG + chr6_1:64275136-64275155 None:intergenic 20.0%
!!! TTTTTATGTGTAAGAATTCT+TGG + chr6_1:64275532-64275551 None:intergenic 20.0%
!! CTAATAATAGAAATCAAGAA+AGG + chr6_1:64275832-64275851 None:intergenic 20.0%
!! CTTTCTTGATTTCTATTATT+AGG - chr6_1:64275830-64275849 Msa0891040:five_prime_UTR 20.0%
!!! TCCTTTAAATTCTTTTTTGA+AGG - chr6_1:64276070-64276089 Msa0891040:five_prime_UTR 20.0%
!!! CCTTTAAATTCTTTTTTGAA+GGG - chr6_1:64276071-64276090 Msa0891040:five_prime_UTR 20.0%
! AAAAAATGAAGACTTGGAAT+GGG + chr6_1:64270459-64270478 None:intergenic 25.0%
! AAAAAAATGAAGACTTGGAA+TGG + chr6_1:64270460-64270479 None:intergenic 25.0%
! AGAGAAAAAAAATGAAGACT+TGG + chr6_1:64270465-64270484 None:intergenic 25.0%
! CCAATAATTGTGGATAAATA+AGG + chr6_1:64270521-64270540 None:intergenic 25.0%
!! CCTTATTTATCCACAATTAT+TGG - chr6_1:64270518-64270537 Msa0891040:three_prime_UTR 25.0%
! CCACTCATAAATAAACAAAA+GGG + chr6_1:64270574-64270593 None:intergenic 25.0%
! ACCACTCATAAATAAACAAA+AGG + chr6_1:64270575-64270594 None:intergenic 25.0%
!! TTTTCTGGATAATTTTCATG+TGG - chr6_1:64270638-64270657 Msa0891040:intron 25.0%
!! TTTCTGGATAATTTTCATGT+GGG - chr6_1:64270639-64270658 Msa0891040:intron 25.0%
!! TTTGGAACTTTCTTTATTTG+AGG - chr6_1:64270743-64270762 Msa0891040:intron 25.0%
!!! GTTTCATGTTTTTAACAGTA+TGG - chr6_1:64270807-64270826 Msa0891040:intron 25.0%
!!! ATGTTTTTAACAGTATGGTT+TGG - chr6_1:64270812-64270831 Msa0891040:intron 25.0%
!! TCGCTCAATTTCTTATTTAT+AGG + chr6_1:64271643-64271662 None:intergenic 25.0%
! AAGAAATTGAGCGAAAAATA+AGG - chr6_1:64271649-64271668 Msa0891040:CDS 25.0%
!! AACTTTTTATCTTTGAACTG+TGG - chr6_1:64271794-64271813 Msa0891040:intron 25.0%
!!! ACCACCATTTATTTTTAAGA+TGG - chr6_1:64271840-64271859 Msa0891040:intron 25.0%
! ACCATCTTAAAAATAAATGG+TGG + chr6_1:64271844-64271863 None:intergenic 25.0%
! AAACAACATAAATTAGCAGT+TGG + chr6_1:64272088-64272107 None:intergenic 25.0%
! CTATCTTTATTCTAACTTCT+AGG + chr6_1:64272207-64272226 None:intergenic 25.0%
!! TTTTAGTCATTCATATACAC+AGG - chr6_1:64272944-64272963 Msa0891040:CDS 25.0%
! TTTAGTCATTCATATACACA+GGG - chr6_1:64272945-64272964 Msa0891040:CDS 25.0%
! TTCTATAAAATGTTCATGAC+AGG + chr6_1:64273539-64273558 None:intergenic 25.0%
!!! AATGCTTTCTTTTAGAGATT+CGG + chr6_1:64273575-64273594 None:intergenic 25.0%
! ATATGTTATACACAGCAATT+TGG - chr6_1:64273806-64273825 Msa0891040:CDS 25.0%
! TATGTTATACACAGCAATTT+GGG - chr6_1:64273807-64273826 Msa0891040:CDS 25.0%
! AATTGAAGAGCTAAAATCTA+AGG - chr6_1:64273843-64273862 Msa0891040:CDS 25.0%
!!! ACTTGATAATTTTGAATTGC+TGG + chr6_1:64274004-64274023 None:intergenic 25.0%
! AACAAAGTTTATCATGGATT+TGG - chr6_1:64274044-64274063 Msa0891040:CDS 25.0%
! TTGCATGAAATGATCATTAA+AGG + chr6_1:64274176-64274195 None:intergenic 25.0%
!! ACGATACTGTTATTGATTAA+TGG + chr6_1:64274622-64274641 None:intergenic 25.0%
! AGGAAAATAAAAGTTTGGTA+GGG - chr6_1:64274711-64274730 Msa0891040:intron 25.0%
! AAGTTAAAGGAGACTAAAAT+TGG - chr6_1:64274734-64274753 Msa0891040:intron 25.0%
! ACAAAATCATTTGATGAAGA+AGG - chr6_1:64274830-64274849 Msa0891040:intron 25.0%
! ATCAACTAGTTAAAAGGAAT+AGG + chr6_1:64274904-64274923 None:intergenic 25.0%
! TTTAGTGTAATTACAAGTGT+CGG + chr6_1:64275013-64275032 None:intergenic 25.0%
! ATTGTTCAATCATGGAAAAT+TGG - chr6_1:64275429-64275448 Msa0891040:intron 25.0%
! AAAATTTAGGCATGATAACT+AGG + chr6_1:64275478-64275497 None:intergenic 25.0%
! TAAGAATTCTTGGAAAAGAT+GGG + chr6_1:64275522-64275541 None:intergenic 25.0%
!! ATTTTGTCTTGGATACTAAA+AGG - chr6_1:64275801-64275820 Msa0891040:intron 25.0%
! TCTTGATTTCTATTATTAGG+TGG - chr6_1:64275833-64275852 Msa0891040:five_prime_UTR 25.0%
! CTTGATTTCTATTATTAGGT+GGG - chr6_1:64275834-64275853 Msa0891040:five_prime_UTR 25.0%
! AATATGTTTCTCCAATTTGT+AGG + chr6_1:64275903-64275922 None:intergenic 25.0%
!!! GGAGAAACATATTTCTTTTT+TGG - chr6_1:64275910-64275929 Msa0891040:five_prime_UTR 25.0%
! CCCTTCAAAAAAGAATTTAA+AGG + chr6_1:64276074-64276093 None:intergenic 25.0%
! TTGAGTTTGAATTTGAGTTC+TGG + chr6_1:64270391-64270410 None:intergenic 30.0%
AAAAATGAAGACTTGGAATG+GGG + chr6_1:64270458-64270477 None:intergenic 30.0%
!!! AAAGGGTATCTTCTTTTTTG+TGG + chr6_1:64270557-64270576 None:intergenic 30.0%
!! CCCTTTTGTTTATTTATGAG+TGG - chr6_1:64270571-64270590 Msa0891040:three_prime_UTR 30.0%
ATTATCCAGAAAAGTCTATC+TGG + chr6_1:64270631-64270650 None:intergenic 30.0%
! TTCTGGATAATTTTCATGTG+GGG - chr6_1:64270640-64270659 Msa0891040:intron 30.0%
TACCTTTCTATAAATGCTTC+TGG + chr6_1:64270681-64270700 None:intergenic 30.0%
! GAAGCATTTATAGAAAGGTA+AGG - chr6_1:64270681-64270700 Msa0891040:intron 30.0%
TGGGGAGTTATTATAATTGA+TGG - chr6_1:64270881-64270900 Msa0891040:intron 30.0%
TGTTCTAACACAAACAATGT+GGG + chr6_1:64271074-64271093 None:intergenic 30.0%
TTGTTCTAACACAAACAATG+TGG + chr6_1:64271075-64271094 None:intergenic 30.0%
GTTTGTGTTAGAACAATAAC+TGG - chr6_1:64271079-64271098 Msa0891040:intron 30.0%
! GTTACAGAAAGTACAAACTA+AGG - chr6_1:64271247-64271266 Msa0891040:intron 30.0%
!! CTTTGTTGGTGTTTGTTTTT+GGG + chr6_1:64271293-64271312 None:intergenic 30.0%
!! TCTTTGTTGGTGTTTGTTTT+TGG + chr6_1:64271294-64271313 None:intergenic 30.0%
AAAAATAAGGTCTTAGGGTA+GGG - chr6_1:64271662-64271681 Msa0891040:CDS 30.0%
CACACATAATAAATCCTTGA+GGG + chr6_1:64271710-64271729 None:intergenic 30.0%
!! GCGAGTTATTTTCAATCTTT+AGG - chr6_1:64271729-64271748 Msa0891040:CDS 30.0%
TCTTACTACTCTATTGCAAT+GGG + chr6_1:64272129-64272148 None:intergenic 30.0%
TTTCTTGGTTCAGAAATTAG+AGG + chr6_1:64272333-64272352 None:intergenic 30.0%
TAATTTCTGAACCAAGAAAG+AGG - chr6_1:64272334-64272353 Msa0891040:intron 30.0%
CCTTAACAGAAATAGATCAT+CGG - chr6_1:64272453-64272472 Msa0891040:CDS 30.0%
CTTAGAAAACTCATTTGAGA+AGG - chr6_1:64272580-64272599 Msa0891040:CDS 30.0%
ATGATGTTTGATCTATTGTC+TGG - chr6_1:64272605-64272624 Msa0891040:CDS 30.0%
! GACTGAGGTTTTCTTTATAA+TGG - chr6_1:64272727-64272746 Msa0891040:CDS 30.0%
TCAACTTACAATTCTCATGT+TGG + chr6_1:64272856-64272875 None:intergenic 30.0%
TTAGTCATTCATATACACAG+GGG - chr6_1:64272946-64272965 Msa0891040:CDS 30.0%
! TGAACAAGTGGCATTTTATA+TGG - chr6_1:64273168-64273187 Msa0891040:CDS 30.0%
! GGGATTTCGAAAAGTATAAT+GGG - chr6_1:64273256-64273275 Msa0891040:CDS 30.0%
! AGAAGAACGAAAGAATTTTG+AGG - chr6_1:64273480-64273499 Msa0891040:CDS 30.0%
AAGAGCTGAACTTTCTTAAA+GGG - chr6_1:64273671-64273690 Msa0891040:CDS 30.0%
TACCAGAACAAAGTTTATCA+TGG - chr6_1:64274038-64274057 Msa0891040:CDS 30.0%
ATCCATGATAAACTTTGTTC+TGG + chr6_1:64274043-64274062 None:intergenic 30.0%
AACATAGAACTTATTTGACG+AGG + chr6_1:64274125-64274144 None:intergenic 30.0%
! TCTTTTATGGAATCTCAGTT+TGG - chr6_1:64274149-64274168 Msa0891040:five_prime_UTR 30.0%
! TTTTCAGTTCAATTTGGACT+TGG + chr6_1:64274224-64274243 None:intergenic 30.0%
GAGAGTTAGATCAATGTATT+AGG + chr6_1:64274327-64274346 None:intergenic 30.0%
GAAAGCTAAACATGAAGATA+AGG + chr6_1:64274537-64274556 None:intergenic 30.0%
!!! TTTCCTTGTTGTTTTACTCT+TGG - chr6_1:64274553-64274572 Msa0891040:intron 30.0%
CAGGAAAATAAAAGTTTGGT+AGG - chr6_1:64274710-64274729 Msa0891040:intron 30.0%
ATCATTTGATGAAGAAGGAA+TGG - chr6_1:64274835-64274854 Msa0891040:intron 30.0%
ACACTTCAATAAAACCTTTC+AGG - chr6_1:64274859-64274878 Msa0891040:intron 30.0%
! CTAGTTGATATTATGTTGGT+AGG - chr6_1:64274915-64274934 Msa0891040:intron 30.0%
TTCAAACTATTAGTTGTGTC+AGG - chr6_1:64275045-64275064 Msa0891040:intron 30.0%
TCAAACTATTAGTTGTGTCA+GGG - chr6_1:64275046-64275065 Msa0891040:intron 30.0%
!! TGTTTACAAAAGCACTGAAT+CGG + chr6_1:64275314-64275333 None:intergenic 30.0%
TATGTTAGAATATGCAACGA+AGG + chr6_1:64275345-64275364 None:intergenic 30.0%
TTCGTTGCATATTCTAACAT+AGG - chr6_1:64275344-64275363 Msa0891040:intron 30.0%
!!! TTGTCATTTTATCAGAGAGA+AGG + chr6_1:64275394-64275413 None:intergenic 30.0%
GTAAGAATTCTTGGAAAAGA+TGG + chr6_1:64275523-64275542 None:intergenic 30.0%
! GACATGATATTTATCGCTTT+TGG - chr6_1:64275701-64275720 Msa0891040:intron 30.0%
! CGCAAAATCATATTTTGTCT+TGG - chr6_1:64275790-64275809 Msa0891040:intron 30.0%
!! AATTTTTATCCCCCTTGTTT+CGG - chr6_1:64275935-64275954 Msa0891040:five_prime_UTR 30.0%
ACAAACAACAAAATTTCGCT+AGG + chr6_1:64276030-64276049 None:intergenic 30.0%
TTTACTATGTGATGTTAGAG+TGG - chr6_1:64276165-64276184 Msa0891040:five_prime_UTR 30.0%
GAAGAACAAAATTGAGAGAC+AGG + chr6_1:64270336-64270355 None:intergenic 35.0%
! TTGAATTTGAGTTCTGGCAA+AGG + chr6_1:64270385-64270404 None:intergenic 35.0%
TGAAGAGGAAGAAGTCAAAA+TGG + chr6_1:64270497-64270516 None:intergenic 35.0%
GTGGATAAATAAGGTTGAAG+AGG + chr6_1:64270512-64270531 None:intergenic 35.0%
TGAGTGGTAGTTAAAAGACT+TGG - chr6_1:64270587-64270606 Msa0891040:three_prime_UTR 35.0%
! TTCTTCCAGATAGACTTTTC+TGG - chr6_1:64270623-64270642 Msa0891040:three_prime_UTR 35.0%
!! GTCCAGAAGCATTTATAGAA+AGG - chr6_1:64270676-64270695 Msa0891040:intron 35.0%
!! ATTGTTGTTTGTTCTAGCTG+TGG - chr6_1:64270782-64270801 Msa0891040:intron 35.0%
TGTCACAATTCAAGATCCAT+TGG - chr6_1:64271022-64271041 Msa0891040:intron 35.0%
GTCACAATTCAAGATCCATT+GGG - chr6_1:64271023-64271042 Msa0891040:intron 35.0%
GAAACGCAAATCACAAACAA+TGG - chr6_1:64271117-64271136 Msa0891040:intron 35.0%
GTTTGTACTTTCTGTAACAC+CGG + chr6_1:64271245-64271264 None:intergenic 35.0%
!! TCAGGGGTATTGTTGTTATT+TGG + chr6_1:64271395-64271414 None:intergenic 35.0%
!! TAGCTTTGCTATTGTACGTT+AGG + chr6_1:64271467-64271486 None:intergenic 35.0%
TGAGCGAAAAATAAGGTCTT+AGG - chr6_1:64271656-64271675 Msa0891040:CDS 35.0%
GAGCGAAAAATAAGGTCTTA+GGG - chr6_1:64271657-64271676 Msa0891040:CDS 35.0%
GAAAAATAAGGTCTTAGGGT+AGG - chr6_1:64271661-64271680 Msa0891040:CDS 35.0%
GCACACATAATAAATCCTTG+AGG + chr6_1:64271711-64271730 None:intergenic 35.0%
ATCTTTGAACTGTGGAATTG+TGG - chr6_1:64271802-64271821 Msa0891040:intron 35.0%
TCTTTGAACTGTGGAATTGT+GGG - chr6_1:64271803-64271822 Msa0891040:intron 35.0%
! TGCTATCAGGTTTTCGATAT+CGG - chr6_1:64271896-64271915 Msa0891040:intron 35.0%
GTTGTGTTAATAACCCACTT+AGG - chr6_1:64271971-64271990 Msa0891040:intron 35.0%
GATTCTTCCTGATACCAATT+TGG - chr6_1:64272029-64272048 Msa0891040:intron 35.0%
TTCCTGATACCAATTTGGAT+AGG - chr6_1:64272034-64272053 Msa0891040:intron 35.0%
! CTAAGTTAGCCTATCCAAAT+TGG + chr6_1:64272046-64272065 None:intergenic 35.0%
CTCTTACTACTCTATTGCAA+TGG + chr6_1:64272130-64272149 None:intergenic 35.0%
AGAAAAACTCTACTCACTCA+AGG - chr6_1:64272379-64272398 Msa0891040:intron 35.0%
GAAAAACTCTACTCACTCAA+GGG - chr6_1:64272380-64272399 Msa0891040:intron 35.0%
GCAAGGATATATCAAGATCT+TGG + chr6_1:64272430-64272449 None:intergenic 35.0%
! TATTTCTGTTAAGGCTTGCA+AGG + chr6_1:64272447-64272466 None:intergenic 35.0%
!! CCGATGATCTATTTCTGTTA+AGG + chr6_1:64272456-64272475 None:intergenic 35.0%
! AAATGAGTTTTCTAAGTCGC+AGG + chr6_1:64272576-64272595 None:intergenic 35.0%
! GTCTGGCATTTTAGATTTTG+AGG - chr6_1:64272622-64272641 Msa0891040:CDS 35.0%
AACAGAGCTTGACAATTTCA+TGG - chr6_1:64272646-64272665 Msa0891040:CDS 35.0%
TAACTGCTTCTTAGACTCTT+CGG + chr6_1:64272771-64272790 None:intergenic 35.0%
GCAGTTACAACAACAGTTAT+TGG - chr6_1:64272784-64272803 Msa0891040:CDS 35.0%
ATTCATATACACAGGGGAAA+TGG - chr6_1:64272952-64272971 Msa0891040:CDS 35.0%
TTCATATACACAGGGGAAAT+GGG - chr6_1:64272953-64272972 Msa0891040:CDS 35.0%
GAAATCGAAAGATCAGAGAA+TGG - chr6_1:64273024-64273043 Msa0891040:CDS 35.0%
! GGGGATTTCGAAAAGTATAA+TGG - chr6_1:64273255-64273274 Msa0891040:CDS 35.0%
TGTTAATGTTGACGATACTC+AGG - chr6_1:64273411-64273430 Msa0891040:CDS 35.0%
ACAGTTAACTGAAACGAACA+TGG - chr6_1:64273639-64273658 Msa0891040:CDS 35.0%
GAAGAGCTGAACTTTCTTAA+AGG - chr6_1:64273670-64273689 Msa0891040:CDS 35.0%
! ATACACAGCAATTTGGGATA+TGG - chr6_1:64273813-64273832 Msa0891040:CDS 35.0%
! TCTAAGGTTTCAAAAGCTGA+AGG - chr6_1:64273859-64273878 Msa0891040:CDS 35.0%
CCAACTCTTTATGAAGTTCA+AGG + chr6_1:64273933-64273952 None:intergenic 35.0%
CCTTGAACTTCATAAAGAGT+TGG - chr6_1:64273930-64273949 Msa0891040:CDS 35.0%
! GGACTTGGTATACAAAGTTA+AGG + chr6_1:64274209-64274228 None:intergenic 35.0%
! ACTCATTAGAGCATCTTCAA+TGG - chr6_1:64274290-64274309 Msa0891040:intron 35.0%
! CTCATTAGAGCATCTTCAAT+GGG - chr6_1:64274291-64274310 Msa0891040:intron 35.0%
ATTGATCTAACTCTCTCAAG+AGG - chr6_1:64274332-64274351 Msa0891040:intron 35.0%
ACTCCAAGAGTAAAACAACA+AGG + chr6_1:64274559-64274578 None:intergenic 35.0%
!!! TGTTGTTTTACTCTTGGAGT+TGG - chr6_1:64274559-64274578 Msa0891040:intron 35.0%
AAGTTTGGTAGGGAAGTTAA+AGG - chr6_1:64274721-64274740 Msa0891040:intron 35.0%
AAAATTGGTGCATGCAACAA+TGG - chr6_1:64274749-64274768 Msa0891040:intron 35.0%
AAATTGGTGCATGCAACAAT+GGG - chr6_1:64274750-64274769 Msa0891040:intron 35.0%
ATCATTGCTTGAGTCAATGT+TGG + chr6_1:64274804-64274823 None:intergenic 35.0%
TTCAATAAAACCTTTCAGGC+AGG - chr6_1:64274863-64274882 Msa0891040:intron 35.0%
AAAAAAGATACCTGCCTGAA+AGG + chr6_1:64274876-64274895 None:intergenic 35.0%
!! TGTTGGTAGGCTTTATTTAC+AGG - chr6_1:64274928-64274947 Msa0891040:intron 35.0%
AGATAACTATCCCATTGCTT+AGG - chr6_1:64275188-64275207 Msa0891040:intron 35.0%
CAAAGCATATCCTAAGCAAT+GGG + chr6_1:64275201-64275220 None:intergenic 35.0%
AACTGGGATATTATGGTCTT+TGG + chr6_1:64275238-64275257 None:intergenic 35.0%
AAAGACCATAATATCCCAGT+TGG - chr6_1:64275237-64275256 Msa0891040:intron 35.0%
TTATTATGCATGCTCCAACT+GGG + chr6_1:64275254-64275273 None:intergenic 35.0%
ATTATTATGCATGCTCCAAC+TGG + chr6_1:64275255-64275274 None:intergenic 35.0%
!! GTTTACAAAAGCACTGAATC+GGG + chr6_1:64275313-64275332 None:intergenic 35.0%
TAGAATATGCAACGAAGGAA+TGG + chr6_1:64275340-64275359 None:intergenic 35.0%
TTTAGGCATGATAACTAGGT+TGG + chr6_1:64275474-64275493 None:intergenic 35.0%
TTCTTGGAAAAGATGGGATT+TGG + chr6_1:64275516-64275535 None:intergenic 35.0%
AAAAGTGAAGTTAAGCGCTA+TGG + chr6_1:64275570-64275589 None:intergenic 35.0%
! GATTTTGCCACCACATTTTT+TGG - chr6_1:64275596-64275615 Msa0891040:intron 35.0%
GTATAGACCAAAAAATGTGG+TGG + chr6_1:64275606-64275625 None:intergenic 35.0%
TCGGTATAGACCAAAAAATG+TGG + chr6_1:64275609-64275628 None:intergenic 35.0%
TAACATGTTTGGATCAGCTT+TGG - chr6_1:64275647-64275666 Msa0891040:intron 35.0%
AACATGTTTGGATCAGCTTT+GGG - chr6_1:64275648-64275667 Msa0891040:intron 35.0%
! TTTTGCGATAGTCTAAGCTA+AGG + chr6_1:64275777-64275796 None:intergenic 35.0%
CAGCAAATAAGCCTACAAAT+TGG - chr6_1:64275889-64275908 Msa0891040:five_prime_UTR 35.0%
AGATCTATCACTCCAACGTA+CGG + chr6_1:64270301-64270320 None:intergenic 40.0%
CACTCTGTCTCCAATAATTG+TGG + chr6_1:64270531-64270550 None:intergenic 40.0%
GGATTATGATTGTTGTGTGC+TGG - chr6_1:64270936-64270955 Msa0891040:intron 40.0%
!! GCTGGATTTGCTAGAAAACT+AGG - chr6_1:64270954-64270973 Msa0891040:intron 40.0%
TTAACACACTCATGACCCAA+TGG + chr6_1:64271041-64271060 None:intergenic 40.0%
TAATCGCTGTTTACGCAGTT+CGG - chr6_1:64271144-64271163 Msa0891040:intron 40.0%
!! CTTATGGGTGTTGATCGTAA+GGG + chr6_1:64271319-64271338 None:intergenic 40.0%
TGTAACTTAGCCGAATTGGT+GGG + chr6_1:64271349-64271368 None:intergenic 40.0%
TTGTAACTTAGCCGAATTGG+TGG + chr6_1:64271350-64271369 None:intergenic 40.0%
GGTTTGTAACTTAGCCGAAT+TGG + chr6_1:64271353-64271372 None:intergenic 40.0%
!! TAGGCCCAACTATTTGTTGT+GGG + chr6_1:64271448-64271467 None:intergenic 40.0%
! TTAGGCCCAACTATTTGTTG+TGG + chr6_1:64271449-64271468 None:intergenic 40.0%
TGCTAGGGGTTAATTGTGTT+AGG - chr6_1:64271531-64271550 Msa0891040:intron 40.0%
!! GTGTTAGGTGTTGTTAGTGA+TGG - chr6_1:64271546-64271565 Msa0891040:intron 40.0%
CTTTGAACTGTGGAATTGTG+GGG - chr6_1:64271804-64271823 Msa0891040:intron 40.0%
GATATCGAAAACCTGATAGC+AGG + chr6_1:64271897-64271916 None:intergenic 40.0%
! GCTATCAGGTTTTCGATATC+GGG - chr6_1:64271897-64271916 Msa0891040:intron 40.0%
GACATTGAGTCAATACCATC+AGG + chr6_1:64272001-64272020 None:intergenic 40.0%
AGCCTATCCAAATTGGTATC+AGG + chr6_1:64272039-64272058 None:intergenic 40.0%
TAAGTGGATGCAAGCATCAA+TGG + chr6_1:64272285-64272304 None:intergenic 40.0%
CATTTCTTGGACCTCTTTCT+TGG + chr6_1:64272348-64272367 None:intergenic 40.0%
CAAGAAAGAGGTCCAAGAAA+TGG - chr6_1:64272346-64272365 Msa0891040:intron 40.0%
CTAAAGCTGCATCCATTTCT+TGG + chr6_1:64272361-64272380 None:intergenic 40.0%
TCATATACACAGGGGAAATG+GGG - chr6_1:64272954-64272973 Msa0891040:CDS 40.0%
AAGAAGCAGCAGAAGTTGTT+TGG - chr6_1:64273191-64273210 Msa0891040:CDS 40.0%
AGAAGCAGCAGAAGTTGTTT+GGG - chr6_1:64273192-64273211 Msa0891040:CDS 40.0%
! AATGCTACCGAGGTGTTAAT+GGG - chr6_1:64273235-64273254 Msa0891040:CDS 40.0%
TGAGGTTGAACTCAGTTACT+TGG + chr6_1:64273288-64273307 None:intergenic 40.0%
GTAACTGAGTTCAACCTCAA+CGG - chr6_1:64273289-64273308 Msa0891040:CDS 40.0%
!! GATGCTGCTTTAGAGAAGAA+CGG - chr6_1:64273379-64273398 Msa0891040:CDS 40.0%
!! ATGCTGCTTTAGAGAAGAAC+GGG - chr6_1:64273380-64273399 Msa0891040:CDS 40.0%
CGATACTCAGGAAAATACTG+AGG - chr6_1:64273423-64273442 Msa0891040:CDS 40.0%
TCAGGAAAATACTGAGGTGT+TGG - chr6_1:64273429-64273448 Msa0891040:CDS 40.0%
!! ATACTGAGGTGTTGGATTTG+AGG - chr6_1:64273437-64273456 Msa0891040:CDS 40.0%
!! TACTGAGGTGTTGGATTTGA+GGG - chr6_1:64273438-64273457 Msa0891040:CDS 40.0%
AGTACTGCCGAGAAAAAAGT+CGG - chr6_1:64273700-64273719 Msa0891040:CDS 40.0%
!!! AAGCGAACCGACTTTTTTCT+CGG + chr6_1:64273710-64273729 None:intergenic 40.0%
TATCCAACTACAGAATGCGA+AGG - chr6_1:64273753-64273772 Msa0891040:CDS 40.0%
GCTTTGCATGAAAACGTCAT+TGG - chr6_1:64273972-64273991 Msa0891040:CDS 40.0%
TAATGCAACTAGCCACTGAA+AGG - chr6_1:64274067-64274086 Msa0891040:CDS 40.0%
AATGCAACTAGCCACTGAAA+GGG - chr6_1:64274068-64274087 Msa0891040:CDS 40.0%
! AAGGGAGCGCATTAATAAAC+AGG - chr6_1:64274086-64274105 Msa0891040:CDS 40.0%
TAAGGAAAGCTTGCAGTACA+AGG + chr6_1:64274519-64274538 None:intergenic 40.0%
AGGAAGAACATAGTGGTAAC+TGG + chr6_1:64274671-64274690 None:intergenic 40.0%
!!! GTTTTAAAGCATCTAGCTGC+AGG + chr6_1:64274691-64274710 None:intergenic 40.0%
!! GCAGCTAGATGCTTTAAAAC+AGG - chr6_1:64274691-64274710 Msa0891040:intron 40.0%
TATGAAGCACAAACACTCCT+GGG - chr6_1:64274952-64274971 Msa0891040:intron 40.0%
TAAACTATGAAGCACGGATG+CGG + chr6_1:64275095-64275114 None:intergenic 40.0%
ATCCGTGCTTCATAGTTTAC+AGG - chr6_1:64275096-64275115 Msa0891040:intron 40.0%
GTCCTGTAAACTATGAAGCA+CGG + chr6_1:64275101-64275120 None:intergenic 40.0%
GCAAAGCATATCCTAAGCAA+TGG + chr6_1:64275202-64275221 None:intergenic 40.0%
ATGCTCCAACTGGGATATTA+TGG + chr6_1:64275245-64275264 None:intergenic 40.0%
CAACGTGCATTGTTCAATCA+TGG - chr6_1:64275421-64275440 Msa0891040:intron 40.0%
!! GCTTAACTTCACTTTTGCAC+AGG - chr6_1:64275574-64275593 Msa0891040:intron 40.0%
CGATAGTCTAAGCTAAGGTT+TGG + chr6_1:64275772-64275791 None:intergenic 40.0%
ATCACTCCAACGTACGGTTT+AGG + chr6_1:64270295-64270314 None:intergenic 45.0%
TGCACAAGACAAACAGAGAC+CGG - chr6_1:64271223-64271242 Msa0891040:intron 45.0%
! CAAACTAAGGCGCCATCTAT+AGG - chr6_1:64271260-64271279 Msa0891040:intron 45.0%
!! GATCGTAAGGGTGTCTTTGT+TGG + chr6_1:64271307-64271326 None:intergenic 45.0%
!! CCTTATGGGTGTTGATCGTA+AGG + chr6_1:64271320-64271339 None:intergenic 45.0%
CCTTACGATCAACACCCATA+AGG - chr6_1:64271317-64271336 Msa0891040:intron 45.0%
! TTGGTGGGTGTTGTCCTTAT+GGG + chr6_1:64271334-64271353 None:intergenic 45.0%
! ATTGGTGGGTGTTGTCCTTA+TGG + chr6_1:64271335-64271354 None:intergenic 45.0%
AAGGACAACACCCACCAATT+CGG - chr6_1:64271336-64271355 Msa0891040:intron 45.0%
!! AGGCCCAACTATTTGTTGTG+GGG + chr6_1:64271447-64271466 None:intergenic 45.0%
TGGAATTGTGGGGTTGTGTT+AGG - chr6_1:64271814-64271833 Msa0891040:intron 45.0%
!! GCAGGTGACACAATGGATTT+TGG + chr6_1:64271879-64271898 None:intergenic 45.0%
GGTTCGTGGACATAAATGGT+GGG + chr6_1:64271926-64271945 None:intergenic 45.0%
TGGTTCGTGGACATAAATGG+TGG + chr6_1:64271927-64271946 None:intergenic 45.0%
! GCTTGGTTCGTGGACATAAA+TGG + chr6_1:64271930-64271949 None:intergenic 45.0%
ACCATCAGGTCAACCTAAGT+GGG + chr6_1:64271987-64272006 None:intergenic 45.0%
TACCATCAGGTCAACCTAAG+TGG + chr6_1:64271988-64272007 None:intergenic 45.0%
GCAGCTTCAGAAAAGTCTTG+TGG - chr6_1:64272826-64272845 Msa0891040:CDS 45.0%
! ATGCCACTTGTTCAGTGTAG+CGG + chr6_1:64273162-64273181 None:intergenic 45.0%
GAAGCAGCAGAAGTTGTTTG+GGG - chr6_1:64273193-64273212 Msa0891040:CDS 45.0%
! CAATGCTACCGAGGTGTTAA+TGG - chr6_1:64273234-64273253 Msa0891040:CDS 45.0%
! ATGCTACCGAGGTGTTAATG+GGG - chr6_1:64273236-64273255 Msa0891040:CDS 45.0%
CGAAATCCCCATTAACACCT+CGG + chr6_1:64273245-64273264 None:intergenic 45.0%
! GGTGTTGGATTTGAGGGAAA+AGG - chr6_1:64273444-64273463 Msa0891040:CDS 45.0%
TTCGCTTGAGAAGCAACTGA+GGG - chr6_1:64273723-64273742 Msa0891040:CDS 45.0%
ATGCCTTCGCATTCTGTAGT+TGG + chr6_1:64273759-64273778 None:intergenic 45.0%
ATTAATGCGCTCCCTTTCAG+TGG + chr6_1:64274082-64274101 None:intergenic 45.0%
TAGCTGCAGGAAGAACATAG+TGG + chr6_1:64274678-64274697 None:intergenic 45.0%
CTATGAAGCACAAACACTCC+TGG - chr6_1:64274951-64274970 Msa0891040:intron 45.0%
ATGAAGCACAAACACTCCTG+GGG - chr6_1:64274953-64274972 Msa0891040:intron 45.0%
!! TACAAAAGCACTGAATCGGG+TGG + chr6_1:64275310-64275329 None:intergenic 45.0%
AAGACCAACACCGAAACAAG+GGG + chr6_1:64275948-64275967 None:intergenic 45.0%
GAAGACCAACACCGAAACAA+GGG + chr6_1:64275949-64275968 None:intergenic 45.0%
AGAAGACCAACACCGAAACA+AGG + chr6_1:64275950-64275969 None:intergenic 45.0%
!!! ATATTTTTTAACTTTAATAA+TGG - chr6_1:64272256-64272275 Msa0891040:intron 5.0%
!!! AATTACATTAATTATTTTTT+AGG + chr6_1:64276147-64276166 None:intergenic 5.0%
ACTCCAACGTACGGTTTAGG+TGG + chr6_1:64270292-64270311 None:intergenic 50.0%
! ACTAAGGCGCCATCTATAGG+CGG - chr6_1:64271263-64271282 Msa0891040:intron 50.0%
TTGGGTGTTCCGCCTATAGA+TGG + chr6_1:64271275-64271294 None:intergenic 50.0%
TGGTGATTGAACCAGTGGCA+CGG + chr6_1:64271419-64271438 None:intergenic 50.0%
TCCCCCCCACAACAAATAGT+TGG - chr6_1:64271440-64271459 Msa0891040:intron 50.0%
!! CCCAACTATTTGTTGTGGGG+GGG + chr6_1:64271444-64271463 None:intergenic 50.0%
CCCCCCCACAACAAATAGTT+GGG - chr6_1:64271441-64271460 Msa0891040:intron 50.0%
!! GCCCAACTATTTGTTGTGGG+GGG + chr6_1:64271445-64271464 None:intergenic 50.0%
!! GGCCCAACTATTTGTTGTGG+GGG + chr6_1:64271446-64271465 None:intergenic 50.0%
AAGGTCTTAGGGTAGGGACT+AGG - chr6_1:64271668-64271687 Msa0891040:CDS 50.0%
AGGTCTTAGGGTAGGGACTA+GGG - chr6_1:64271669-64271688 Msa0891040:CDS 50.0%
CCTGATAGCAGGTGACACAA+TGG + chr6_1:64271886-64271905 None:intergenic 50.0%
CCATTGTGTCACCTGCTATC+AGG - chr6_1:64271883-64271902 Msa0891040:intron 50.0%
! TCGTGGACATAAATGGTGGG+TGG + chr6_1:64271923-64271942 None:intergenic 50.0%
!! AGCACTATTGGCTTGGTTCG+TGG + chr6_1:64271940-64271959 None:intergenic 50.0%
ACGAACCAAGCCAATAGTGC+TGG - chr6_1:64271939-64271958 Msa0891040:intron 50.0%
!! ACCCACTTAGGTTGACCTGA+TGG - chr6_1:64271983-64272002 Msa0891040:intron 50.0%
AGCCTATTCTTCCGAGAAGC+TGG - chr6_1:64272478-64272497 Msa0891040:CDS 50.0%
CACCAGCTTCTCGGAAGAAT+AGG + chr6_1:64272483-64272502 None:intergenic 50.0%
ATGCAAGCTCACCAGCTTCT+CGG + chr6_1:64272492-64272511 None:intergenic 50.0%
GTCGTGCAGACATTTGACTG+AGG - chr6_1:64272712-64272731 Msa0891040:CDS 50.0%
ATACACAGGGGAAATGGGGA+AGG - chr6_1:64272958-64272977 Msa0891040:CDS 50.0%
ACTCCGCTACACTGAACAAG+TGG - chr6_1:64273156-64273175 Msa0891040:CDS 50.0%
TGAAGCAGACAATGCTACCG+AGG - chr6_1:64273225-64273244 Msa0891040:CDS 50.0%
CTCGCTGCATATAACCGTTG+AGG + chr6_1:64273306-64273325 None:intergenic 50.0%
!! AGCTGAGAGTGCTGAAGCAA+AGG - chr6_1:64273612-64273631 Msa0891040:intron 50.0%
GTTCGCTTGAGAAGCAACTG+AGG - chr6_1:64273722-64273741 Msa0891040:CDS 50.0%
!! TACAAGTGTCGGTGTCGTGT+CGG + chr6_1:64275002-64275021 None:intergenic 50.0%
! TATCCCCCTTGTTTCGGTGT+TGG - chr6_1:64275941-64275960 Msa0891040:five_prime_UTR 50.0%
AGACCAACACCGAAACAAGG+GGG + chr6_1:64275947-64275966 None:intergenic 50.0%
!! GGTGTTGGTCTTCTGCTTGT+TGG - chr6_1:64275956-64275975 Msa0891040:five_prime_UTR 50.0%
CAGCCACCTAAACCGTACGT+TGG - chr6_1:64270286-64270305 Msa0891040:three_prime_UTR 55.0%
TGAACCAGTGGCACGGTTCA+GGG + chr6_1:64271412-64271431 None:intergenic 55.0%
TTGAACCAGTGGCACGGTTC+AGG + chr6_1:64271413-64271432 None:intergenic 55.0%
GGGAGTGGTGATTGAACCAG+TGG + chr6_1:64271424-64271443 None:intergenic 55.0%
!! CTATTTGTTGTGGGGGGGAG+TGG + chr6_1:64271439-64271458 None:intergenic 55.0%
TCTTAGGGTAGGGACTAGGG+AGG - chr6_1:64271672-64271691 Msa0891040:CDS 55.0%
! CACGACCAGCACTATTGGCT+TGG + chr6_1:64271947-64271966 None:intergenic 55.0%
!! AGCCAATAGTGCTGGTCGTG+AGG - chr6_1:64271947-64271966 Msa0891040:intron 55.0%
!! GCCAATAGTGCTGGTCGTGA+GGG - chr6_1:64271948-64271967 Msa0891040:intron 55.0%
!! CCAATAGTGCTGGTCGTGAG+GGG - chr6_1:64271949-64271968 Msa0891040:intron 55.0%
TGCTTGAGAAGTCGCTCGCA+AGG - chr6_1:64273074-64273093 Msa0891040:CDS 55.0%
GCTTGAGAAGTCGCTCGCAA+GGG - chr6_1:64273075-64273094 Msa0891040:CDS 55.0%
!! GCGAAGGCATCTTCTGAAGC+AGG - chr6_1:64273769-64273788 Msa0891040:CDS 55.0%
CACGTAACACGTCTAACCCC+AGG + chr6_1:64274972-64274991 None:intergenic 55.0%
CTATGAAGCACGGATGCGGA+CGG + chr6_1:64275091-64275110 None:intergenic 55.0%
ATACCCCTGAACCGTGCCAC+TGG - chr6_1:64271405-64271424 Msa0891040:intron 60.0%
GAACCAGTGGCACGGTTCAG+GGG + chr6_1:64271411-64271430 None:intergenic 60.0%
GGCAGGTGTACAGACCCTCA+AGG - chr6_1:64271693-64271712 Msa0891040:CDS 60.0%
CCCCTCACGACCAGCACTAT+TGG + chr6_1:64271952-64271971 None:intergenic 60.0%
!! TGTCGGTGTCGTGTCGGTGT+CGG + chr6_1:64274996-64275015 None:intergenic 60.0%
AGGGTAGGGACTAGGGAGGC+AGG - chr6_1:64271676-64271695 Msa0891040:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 64270285 64276218 64270285 ID=Msa0891040;Name=Msa0891040
chr6_1 mRNA 64270285 64276218 64270285 ID=Msa0891040-mRNA-1;Parent=Msa0891040;Name=Msa0891040-mRNA-1;_AED=0.00;_eAED=0.00;_QI=454|1|1|1|0.5|0.4|5|359|613
chr6_1 exon 64270285 64270651 64270285 ID=Msa0891040-mRNA-1:exon:11748;Parent=Msa0891040-mRNA-1
chr6_1 exon 64271619 64271808 64271619 ID=Msa0891040-mRNA-1:exon:11747;Parent=Msa0891040-mRNA-1
chr6_1 exon 64272396 64273537 64272396 ID=Msa0891040-mRNA-1:exon:11746;Parent=Msa0891040-mRNA-1
chr6_1 exon 64273637 64274179 64273637 ID=Msa0891040-mRNA-1:exon:11745;Parent=Msa0891040-mRNA-1
chr6_1 exon 64275806 64276218 64275806 ID=Msa0891040-mRNA-1:exon:11744;Parent=Msa0891040-mRNA-1
chr6_1 five_prime_UTR 64275806 64276218 64275806 ID=Msa0891040-mRNA-1:five_prime_utr;Parent=Msa0891040-mRNA-1
chr6_1 five_prime_UTR 64274139 64274179 64274139 ID=Msa0891040-mRNA-1:five_prime_utr;Parent=Msa0891040-mRNA-1
chr6_1 CDS 64273637 64274138 64273637 ID=Msa0891040-mRNA-1:cds;Parent=Msa0891040-mRNA-1
chr6_1 CDS 64272396 64273537 64272396 ID=Msa0891040-mRNA-1:cds;Parent=Msa0891040-mRNA-1
chr6_1 CDS 64271619 64271808 64271619 ID=Msa0891040-mRNA-1:cds;Parent=Msa0891040-mRNA-1
chr6_1 CDS 64270644 64270651 64270644 ID=Msa0891040-mRNA-1:cds;Parent=Msa0891040-mRNA-1
chr6_1 three_prime_UTR 64270285 64270643 64270285 ID=Msa0891040-mRNA-1:three_prime_utr;Parent=Msa0891040-mRNA-1
Gene Sequence

>Msa0891040

ATGGATGCAGCTTTAGAAAAACTCTACTCACTCAAGGGTTTCTCAACAAAAGAAAACGACATCCAAGATCTTGATATATCCTTGCAAGCCTTAACAGAAATAGATCATCGGCTAGCCTATTCTTCCGAGAAGCTGGTGAGCTTGCATGTTCTGTATATTTATCTATTGGCTCGAGAAAACGATCTTGAAGAAATAGATTCAAAGAATACCTGCGACTTAGAAAACTCATTTGAGAAGGCAATGATGTTTGATCTATTGTCTGGCATTTTAGATTTTGAGGCAACAGAGCTTGACAATTTCATGGACACTCTACATGAAGAAATTGTCGATGCTCGTCAAAAAATATTGTCGTGCAGACATTTGACTGAGGTTTTCTTTATAATGGATGAAAAATTGCAAGATTCCGAAGAGTCTAAGAAGCAGTTACAACAACAGTTATTGGAGTTAAAGATTCAGTCATCGCAGCTTCAGAAAAGTCTTGTGGCTTTCCAACATGAGAATTGGGAAATGGGGAAGGCTTTGAATTTATCAGAAAATAGTCATGTGTCAAATGTGAAAGTGAAATCGAAAGATCAGAGAATGGTAGATCAACAGAGATATATTCTTCGAATGCTTGAGAAGTCGCTCGCAAGGGAGCTAGATCTTGAAAAGAAGTTAGCAGAGTCAAGAAATAACGAAGAACTAAAGTTGAAACTCCGCTACACTGAACAAGTGGCATTTTATATGGAAGAAGCAGCAGAAGTTGTTTGGGGAAGATTTCTTGAAGCAGACAATGCTACCGAGGTGTTAATGGGGATTTCGAAAAGTATAATGGGACGTCTCCAAGTAACTGAGTTCAACCTCAACGGTTATATGCAGCGAGAAAATGAGCTAAAATTGAATATTCAAATTTTAATCGAACAACTTAAGGCTAAAGATGCTGCTTTAGAGAAGAACGGGAGATGTAATGTTAATGTTGACGATACTCAGGAAAATACTGAGGTGTTGGATTTGAGGGAAAAGGTGAAAATTCTAGAAGAAGAACGAAAGAATTTTGAGGTTCAGATAAATTCTTTGAGTGAAGAGAATGAAGCCTGTCATGAACATTTTATAGAAATAGAAAATTTTGCCGAATCTCTAAAAGAAAGCATTGATATAGCAGAAAATCGAGCTGAGAGTGCTGAAGCAAAGGTTACACAGTTAACTGAAACGAACATGGAACTTACTGAAGAGCTGAACTTTCTTAAAGGGAGTGCTAGTACTGCCGAGAAAAAAGTCGGTTCGCTTGAGAAGCAACTGAGGGAGCTAGATATCCAACTACAGAATGCGAAGGCATCTTCTGAAGCAGGTCAAGAACAGCAGAATATGTTATACACAGCAATTTGGGATATGGAAATATTAATTGAAGAGCTAAAATCTAAGGTTTCAAAAGCTGAAGGTAATAAAGATAGCGCTGAAGAACAATGCATTATGCTATCTGAAAATAACCTTGAACTTCATAAAGAGTTGGATCTCTTCAAGTCGAGAATGCTTTGCATGAAAACGTCATTGGATCACGCCAGCAATTCAAAATTATCAAGTGCAAAAGAAATTGATACCAGAACAAAGTTTATCATGGATTTGGTAATGCAACTAGCCACTGAAAGGGAGCGCATTAATAAACAGCTAGATGCTTTAAAACAGGAAAATAAAAGTTTGGTAGGGAAGTTAAAGGAGACTAAAATTGGTGCATGCAACAATGGGCTAATTAACAGAAATGAAGATCAATCTTCCAACATTGACTCAAGCAATGATAGCTGTACAAAATCATTTGATGAAGAAGGAATGGAACACTTCAATAAAACCTTTCAGGCAGGTGGGTGA

Protein sequence

>Msa0891040

MDAALEKLYSLKGFSTKENDIQDLDISLQALTEIDHRLAYSSEKLVSLHVLYIYLLARENDLEEIDSKNTCDLENSFEKAMMFDLLSGILDFEATELDNFMDTLHEEIVDARQKILSCRHLTEVFFIMDEKLQDSEESKKQLQQQLLELKIQSSQLQKSLVAFQHENWEMGKALNLSENSHVSNVKVKSKDQRMVDQQRYILRMLEKSLARELDLEKKLAESRNNEELKLKLRYTEQVAFYMEEAAEVVWGRFLEADNATEVLMGISKSIMGRLQVTEFNLNGYMQRENELKLNIQILIEQLKAKDAALEKNGRCNVNVDDTQENTEVLDLREKVKILEEERKNFEVQINSLSEENEACHEHFIEIENFAESLKESIDIAENRAESAEAKVTQLTETNMELTEELNFLKGSASTAEKKVGSLEKQLRELDIQLQNAKASSEAGQEQQNMLYTAIWDMEILIEELKSKVSKAEGNKDSAEEQCIMLSENNLELHKELDLFKSRMLCMKTSLDHASNSKLSSAKEIDTRTKFIMDLVMQLATERERINKQLDALKQENKSLVGKLKETKIGACNNGLINRNEDQSSNIDSSNDSCTKSFDEEGMEHFNKTFQAGG*