AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0266000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0266000 MtrunA17_Chr2g0331141 80.000 385 22 2 1 385 1 330 0.0 587
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0266000 AT3G16310.1 54.005 387 118 7 1 385 1 329 2.22e-128 372

Find 135 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGCTGACACTTAAGATTT+TGG 0.165990 2_2:+66463109 Msa0266000:three_prime_UTR
TTCTCCAAATGATACTAATT+TGG 0.190381 2_2:+66462168 Msa0266000:CDS
GAAGAATGGGTAACAGTATA+TGG 0.215069 2_2:+66459984 Msa0266000:CDS
ATTAATGGAGTCCTAATTAT+TGG 0.241844 2_2:+66462587 Msa0266000:CDS
GGAGTCGAAAATTCTCTATT+TGG 0.255914 2_2:-66459711 None:intergenic
ACTTCAGGCCTTGCCACTTC+TGG 0.276867 2_2:-66459924 None:intergenic
AAAATTCTCTATTTGGAGTT+TGG 0.279174 2_2:-66459704 None:intergenic
TTTCCCCGGCGGGCATTAAC+AGG 0.283319 2_2:-66459501 None:intergenic
TGTTCACCACCACTCTTTGC+AGG 0.284691 2_2:-66459828 None:intergenic
AATGTGAAATTGAGAATTTA+AGG 0.290907 2_2:-66458307 None:intergenic
AAGAATGGAATACAAATTAA+TGG 0.309323 2_2:+66462572 Msa0266000:CDS
AGAAATGGGATCATAATATA+TGG 0.320571 2_2:+66463049 Msa0266000:three_prime_UTR
TTGCCATTCTGCAGATAATA+TGG 0.320989 2_2:-66462737 None:intergenic
AAAACCAAATTAGTATCATT+TGG 0.323538 2_2:-66462172 None:intergenic
AAGGAATTTCGCTGGACTTC+AGG 0.331878 2_2:-66459939 None:intergenic
TCCTTGATTGTTAAGCCTTT+CGG 0.335228 2_2:-66462648 None:intergenic
GCTTCGGACTTGCCTTTCGC+TGG 0.345748 2_2:-66459732 None:intergenic
AGGGTTTCACACCAATAATT+AGG 0.353677 2_2:-66462598 None:intergenic
TAATCCAGTATGCCTGATTC+TGG 0.358857 2_2:-66459639 None:intergenic
TTCTCCAGAATCAGGCATAC+TGG 0.373999 2_2:+66459635 Msa0266000:CDS
TACTTCTGGGTGCCTGGCAG+TGG 0.374416 2_2:-66462690 None:intergenic
TCAAACTAAGCGAGCCTTGT+TGG 0.381381 2_2:-66459791 None:intergenic
CCTCACTCCTACCTGCCATA+TGG 0.391246 2_2:-66460747 None:intergenic
GCGTGAAAACTTTGGTAATT+CGG 0.395948 2_2:+66459566 Msa0266000:CDS
GGCCTTGCCACTTCTGGTGG+TGG 0.396977 2_2:-66459918 None:intergenic
AAGGCTCGCTTAGTTTGAAT+TGG 0.399188 2_2:+66459796 Msa0266000:CDS
ATGTGAAATTGAGAATTTAA+GGG 0.400029 2_2:-66458306 None:intergenic
TGTGCTTACTTCTGGGTGCC+TGG 0.400037 2_2:-66462696 None:intergenic
CCTGGCAGTGGGTAGAGGTA+AGG 0.403276 2_2:-66462678 None:intergenic
AGCACATCTTATGCTTTAAG+AGG 0.412178 2_2:+66459756 Msa0266000:CDS
ATTGTTCATTTGATTTGAGC+TGG 0.412737 2_2:+66462929 Msa0266000:three_prime_UTR
GAAATCTTAATGAGGAAGAA+TGG 0.412872 2_2:+66459970 Msa0266000:CDS
GCACATCAAAAGCTCCTTCT+CGG 0.416892 2_2:+66462714 Msa0266000:CDS
CAGGAGCATCTTCTTCTCTA+TGG 0.417616 2_2:+66459544 Msa0266000:CDS
GGGTGCCTGGCAGTGGGTAG+AGG 0.423344 2_2:-66462683 None:intergenic
CTGGCCCTAGAGATGCTAAC+TGG 0.425172 2_2:+66462236 Msa0266000:CDS
GCAGTCTAGATGATCTGTTT+TGG 0.425257 2_2:+66462839 Msa0266000:exon
TGCTCCTGACTGGCTTGGAC+TGG 0.428965 2_2:-66459529 None:intergenic
ACCGAAAGGCTTAACAATCA+AGG 0.430735 2_2:+66462647 Msa0266000:CDS
ACTTAGTCTCAGGAGACATT+TGG 0.432323 2_2:-66459662 None:intergenic
AGCATAAGATGTGCTGGCTT+CGG 0.432389 2_2:-66459748 None:intergenic
TCTCTATGGCGTGAAAACTT+TGG 0.434782 2_2:+66459558 Msa0266000:CDS
AGTGATAATTCTCAAAACTT+TGG 0.435069 2_2:-66460488 None:intergenic
CTCACTCCTACCTGCCATAT+GGG 0.436208 2_2:-66460746 None:intergenic
TTCTCTATTTGGAGTTTGGA+TGG 0.437107 2_2:-66459700 None:intergenic
CTTGCCACTTCTGGTGGTGG+AGG 0.448887 2_2:-66459915 None:intergenic
GGTCAAAGCTTGACGTTGCA+TGG 0.453671 2_2:-66462627 None:intergenic
GCTCGCTTAGTTTGAATTGG+TGG 0.454126 2_2:+66459799 Msa0266000:CDS
CAAAATGCTCTCAACAAGAA+TGG 0.460346 2_2:+66462557 Msa0266000:CDS
TAACACTGCAATCTTATGAA+TGG 0.460377 2_2:+66462994 Msa0266000:three_prime_UTR
GTCGAGGGTGTGGTTCAGCC+TGG 0.461947 2_2:+66459876 Msa0266000:CDS
GGCTGAACCACACCCTCGAC+TGG 0.463862 2_2:-66459873 None:intergenic
TCAAGAGCATAATGAGGGAC+AGG 0.466942 2_2:+66460798 Msa0266000:CDS
TTATTGTCTGACTTAGTCTC+AGG 0.468844 2_2:-66459672 None:intergenic
GGATCATAATATATGGATAC+AGG 0.469862 2_2:+66463056 Msa0266000:three_prime_UTR
GTCCATGATCTTGGATGCTA+AGG 0.469908 2_2:-66462807 None:intergenic
ATCCTTAGCATCCAAGATCA+TGG 0.475742 2_2:+66462805 Msa0266000:CDS
ATTAAGATTTCCTGCAGGTA+AGG 0.475811 2_2:-66459958 None:intergenic
GTGAACAAGAGGAGAAAGGA+AGG 0.476290 2_2:+66459844 Msa0266000:CDS
AATTATTGGTGTGAAACCCT+TGG 0.478180 2_2:+66462601 Msa0266000:CDS
ATCCCCTGTTAATGCCCGCC+GGG 0.480958 2_2:+66459497 Msa0266000:CDS
AAATCTTAATGAGGAAGAAT+GGG 0.484177 2_2:+66459971 Msa0266000:CDS
TTGCTGCAGGAATTCCCATA+TGG 0.484532 2_2:+66460732 Msa0266000:intron
AAACATCAAGTCCATGATCT+TGG 0.488113 2_2:-66462816 None:intergenic
GAAGATGCTCCTGACTGGCT+TGG 0.495482 2_2:-66459534 None:intergenic
GTGATGTAATTCATCTCACT+TGG 0.501971 2_2:+66463164 Msa0266000:three_prime_UTR
GGTGGTGAACAAGAGGAGAA+AGG 0.505138 2_2:+66459840 Msa0266000:CDS
TCAGGCCTTGCCACTTCTGG+TGG 0.505586 2_2:-66459921 None:intergenic
ACTTCTGGGTGCCTGGCAGT+GGG 0.506491 2_2:-66462689 None:intergenic
CAGTTAGCATCTCTAGGGCC+AGG 0.509660 2_2:-66462235 None:intergenic
GCATAATGAGGGACAGGGTG+AGG 0.509996 2_2:+66460804 Msa0266000:CDS
GCGCAAAGAACTCCTAGGTC+TGG 0.511122 2_2:+66459444 Msa0266000:CDS
AAGAATGGGTAACAGTATAT+GGG 0.512808 2_2:+66459985 Msa0266000:CDS
AATATTGCTTATAATAAAGC+AGG 0.517140 2_2:-66462880 None:intergenic
TTGACGTTGCATGGGATCCA+AGG 0.518509 2_2:-66462618 None:intergenic
TCTTAAAGCATAAGATGTGC+TGG 0.519255 2_2:-66459754 None:intergenic
CTGCAGGTAAGGAATTTCGC+TGG 0.519335 2_2:-66459947 None:intergenic
CATCCCCTGTTAATGCCCGC+CGG 0.522742 2_2:+66459496 Msa0266000:CDS
AATGCAACTGCAAGGCAGAC+TGG 0.522955 2_2:+66462758 Msa0266000:CDS
GTCAAAGCTTGACGTTGCAT+GGG 0.523353 2_2:-66462626 None:intergenic
GAGAAGAAGATGCTCCTGAC+TGG 0.526749 2_2:-66459539 None:intergenic
CCTTACCTCTACCCACTGCC+AGG 0.527907 2_2:+66462678 Msa0266000:CDS
TCTCTATTTGGAGTTTGGAT+GGG 0.529308 2_2:-66459699 None:intergenic
GAAGTACCTGGTAGTGGTGG+TGG 0.530353 2_2:-66458359 None:intergenic
TCCTCATTAAGATTTCCTGC+AGG 0.533575 2_2:-66459963 None:intergenic
CAGCGAAATTCCTTACCTGC+AGG 0.534512 2_2:+66459948 Msa0266000:CDS
AACGTCAAGCTTTGACCGAA+AGG 0.536916 2_2:+66462633 Msa0266000:CDS
GGGTTCTCCAGTCGAGGGTG+TGG 0.537698 2_2:+66459866 Msa0266000:CDS
CCACAGCGCAAAGAACTCCT+AGG 0.538182 2_2:+66459439 Msa0266000:CDS
TGCAGATAATATGGCCGAGA+AGG 0.543834 2_2:-66462728 None:intergenic
ACTGGAAAACTTTCCCCGGC+GGG 0.548506 2_2:-66459511 None:intergenic
GAGAGAGAAGTACCTGGTAG+TGG 0.550034 2_2:-66458365 None:intergenic
GCACATCTTATGCTTTAAGA+GGG 0.552808 2_2:+66459757 Msa0266000:CDS
CGGCCATATTATCTGCAGAA+TGG 0.555153 2_2:+66462734 Msa0266000:CDS
TCTTCCTCCACCACCAGAAG+TGG 0.556002 2_2:+66459911 Msa0266000:CDS
CTGGCAGTGGGTAGAGGTAA+GGG 0.559275 2_2:-66462677 None:intergenic
TTGGACTGGAAAACTTTCCC+CGG 0.559593 2_2:-66459515 None:intergenic
TGCATCCAGTTAGCATCTCT+AGG 0.560762 2_2:-66462241 None:intergenic
TGCAGGAATTCCCATATGGC+AGG 0.562390 2_2:+66460736 Msa0266000:intron
TTCCCCGGCGGGCATTAACA+GGG 0.567742 2_2:-66459500 None:intergenic
TGACGTTGCATGGGATCCAA+GGG 0.567770 2_2:-66462617 None:intergenic
AAAGTCTGATCTATCTTCCA+AGG 0.574341 2_2:-66459613 None:intergenic
AGGAAGGGGTTCTCCAGTCG+AGG 0.579447 2_2:+66459860 Msa0266000:CDS
GAATAATCAAGAGCATAATG+AGG 0.579549 2_2:+66460792 Msa0266000:CDS
AATTCGCCACCACCACTACC+AGG 0.581143 2_2:+66458353 Msa0266000:five_prime_UTR
ACCTGCAGGAAATCTTAATG+AGG 0.582251 2_2:+66459962 Msa0266000:CDS
TCCCCGGCGGGCATTAACAG+GGG 0.586228 2_2:-66459499 None:intergenic
GAACAAGAGGAGAAAGGAAG+GGG 0.588864 2_2:+66459846 Msa0266000:CDS
CTCCACCACCAGAAGTGGCA+AGG 0.589454 2_2:+66459916 Msa0266000:CDS
TGAACAAGAGGAGAAAGGAA+GGG 0.599791 2_2:+66459845 Msa0266000:CDS
AATAATCAAGAGCATAATGA+GGG 0.602968 2_2:+66460793 Msa0266000:CDS
GCATCCAGTTAGCATCTCTA+GGG 0.606367 2_2:-66462240 None:intergenic
AAAGAGTGGTGGTGAACAAG+AGG 0.606401 2_2:+66459833 Msa0266000:CDS
CCTAGGAGTTCTTTGCGCTG+TGG 0.609099 2_2:-66459439 None:intergenic
GAATGGCTATGATCAGTACT+TGG 0.613442 2_2:+66463011 Msa0266000:three_prime_UTR
GGAAGAGTAATCAATGCACC+AGG 0.629675 2_2:-66459894 None:intergenic
GTGGTGGCGAATTGAAGTGA+AGG 0.630469 2_2:-66458343 None:intergenic
CAAGAGCATAATGAGGGACA+GGG 0.631816 2_2:+66460799 Msa0266000:CDS
GGAATTCCCATATGGCAGGT+AGG 0.632206 2_2:+66460740 Msa0266000:intron
GACTGGAAAACTTTCCCCGG+CGG 0.634463 2_2:-66459512 None:intergenic
AGAGAAGTACCTGGTAGTGG+TGG 0.635221 2_2:-66458362 None:intergenic
CTGATATATTAAGAATTGAG+AGG 0.637184 2_2:+66460509 Msa0266000:CDS
CACATCTTATGCTTTAAGAG+GGG 0.638647 2_2:+66459758 Msa0266000:CDS
AGTGACTGTCTACCAGACCT+AGG 0.639843 2_2:-66459456 None:intergenic
AGAATGGCAATGCAACTGCA+AGG 0.651500 2_2:+66462750 Msa0266000:CDS
TCCCCTGTTAATGCCCGCCG+GGG 0.661914 2_2:+66459498 Msa0266000:CDS
GGAAGGGGTTCTCCAGTCGA+GGG 0.662892 2_2:+66459861 Msa0266000:CDS
CCATATGGCAGGTAGGAGTG+AGG 0.666987 2_2:+66460747 Msa0266000:CDS
TTTCAGTGAGAAGAGAACGT+TGG 0.668921 2_2:-66458229 None:intergenic
GGGGTGCAGCAAAACCAACA+AGG 0.670858 2_2:+66459777 Msa0266000:CDS
TGGTCGTCACCTGCAAAGAG+TGG 0.678630 2_2:+66459819 Msa0266000:CDS
TGGCTATGATCAGTACTTGG+TGG 0.682691 2_2:+66463014 Msa0266000:three_prime_UTR
TCGTCACCTGCAAAGAGTGG+TGG 0.691867 2_2:+66459822 Msa0266000:CDS
TGGTGGCGAATTGAAGTGAA+GGG 0.710442 2_2:-66458342 None:intergenic
GCAACTGCAAGGCAGACTGG+AGG 0.718127 2_2:+66462761 Msa0266000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAGTAATTTAATTTCAT+AGG + chr2_2:66458656-66458675 Msa0266000:intron 10.0%
!! GATTATACATTAAAAATAAA+AGG - chr2_2:66461789-66461808 None:intergenic 10.0%
!!! AATTTTAAAAGAAAAAACAT+TGG - chr2_2:66462416-66462435 None:intergenic 10.0%
!! AAAACAAAAACAAAAAACAA+AGG - chr2_2:66458503-66458522 None:intergenic 15.0%
!!! AACTTCTTTTTTTTATTTAG+TGG - chr2_2:66460189-66460208 None:intergenic 15.0%
!! AGAATTAAATCAAAACAAAA+TGG - chr2_2:66460403-66460422 None:intergenic 15.0%
!!! TTTTCAGTTTGTTTATTTTT+AGG + chr2_2:66460975-66460994 Msa0266000:intron 15.0%
!!! ATTAAACATTTTAATCGTAA+GGG + chr2_2:66461260-66461279 Msa0266000:intron 15.0%
!!! TTTTGTTTAAATAGACTTTT+TGG + chr2_2:66461550-66461569 Msa0266000:intron 15.0%
!!! TTTGTTTAAATAGACTTTTT+GGG + chr2_2:66461551-66461570 Msa0266000:intron 15.0%
!! TATATTATTATCATCTTGAA+TGG + chr2_2:66461616-66461635 Msa0266000:intron 15.0%
!! ATATTATTATCATCTTGAAT+GGG + chr2_2:66461617-66461636 Msa0266000:intron 15.0%
!!! AATTTTTCTTTATAAAGCAA+TGG + chr2_2:66462313-66462332 Msa0266000:intron 15.0%
!! ATGTGAAATTGAGAATTTAA+GGG - chr2_2:66458309-66458328 None:intergenic 20.0%
!! AATGTGAAATTGAGAATTTA+AGG - chr2_2:66458310-66458329 None:intergenic 20.0%
!!! TCAACTTTTTTTAGTGAATT+TGG + chr2_2:66459337-66459356 Msa0266000:intron 20.0%
!!! GTTTTTATACATTTGTTTCT+TGG + chr2_2:66459359-66459378 Msa0266000:intron 20.0%
!!! CCTTATAAATAGTTTTAAAG+TGG - chr2_2:66460076-66460095 None:intergenic 20.0%
!!! CCACTTTAAAACTATTTATA+AGG + chr2_2:66460073-66460092 Msa0266000:intron 20.0%
!! TCAAGAATAATTGTCTAAAA+GGG + chr2_2:66460575-66460594 Msa0266000:intron 20.0%
!!! AACTTGAAACTTTTAAACAT+AGG - chr2_2:66461052-66461071 None:intergenic 20.0%
!!! TATGTTTAAAAGTTTCAAGT+TGG + chr2_2:66461051-66461070 Msa0266000:intron 20.0%
!! ACGATTAAAATGTTTAATGT+TGG - chr2_2:66461258-66461277 None:intergenic 20.0%
!!! CATTAAACATTTTAATCGTA+AGG + chr2_2:66461259-66461278 Msa0266000:intron 20.0%
!! TTCTGAATTTCCAAATAATA+AGG + chr2_2:66461367-66461386 Msa0266000:intron 20.0%
!! TCTGAATTTCCAAATAATAA+GGG + chr2_2:66461368-66461387 Msa0266000:intron 20.0%
!! ATTGTTAATCCCTTATTATT+TGG - chr2_2:66461380-66461399 None:intergenic 20.0%
!!! AAAAATCTAAACCATTTTAG+CGG - chr2_2:66461524-66461543 None:intergenic 20.0%
!!! AATTTGTATTTTGTAGGAAA+AGG - chr2_2:66461678-66461697 None:intergenic 20.0%
!! TAATCATATATACTCTTGAA+TGG - chr2_2:66462098-66462117 None:intergenic 20.0%
!! AAAACCAAATTAGTATCATT+TGG - chr2_2:66462175-66462194 None:intergenic 20.0%
!!! ATGATACTAATTTGGTTTTA+AGG + chr2_2:66462176-66462195 Msa0266000:CDS 20.0%
!!! TGATACTAATTTGGTTTTAA+GGG + chr2_2:66462177-66462196 Msa0266000:CDS 20.0%
!! ACATTGGAAATATTGATAAA+AGG - chr2_2:66462400-66462419 None:intergenic 20.0%
!! AAGAATGGAATACAAATTAA+TGG + chr2_2:66462572-66462591 Msa0266000:CDS 20.0%
!! AATATTGCTTATAATAAAGC+AGG - chr2_2:66462883-66462902 None:intergenic 20.0%
! CAATTAGTTGAACAATTTGA+TGG + chr2_2:66458529-66458548 Msa0266000:intron 25.0%
! AAAACTACAAGTTATTCCAT+GGG - chr2_2:66458705-66458724 None:intergenic 25.0%
! CAAAATTATCTCCATGTTAA+GGG + chr2_2:66458974-66458993 Msa0266000:intron 25.0%
!! ACAATCGCTTATTGATTATA+CGG + chr2_2:66459138-66459157 Msa0266000:intron 25.0%
!!! TATGAATAAGCTATTTCTAC+AGG - chr2_2:66459191-66459210 None:intergenic 25.0%
!! TATACATTTGTTTCTTGGTT+TGG + chr2_2:66459364-66459383 Msa0266000:intron 25.0%
!! AAAATTCTCTATTTGGAGTT+TGG - chr2_2:66459707-66459726 None:intergenic 25.0%
! AAATCTTAATGAGGAAGAAT+GGG + chr2_2:66459971-66459990 Msa0266000:CDS 25.0%
! TCTACTTTAGCATTTACATT+TGG + chr2_2:66460020-66460039 Msa0266000:intron 25.0%
! GTAAAATGTACCATATTTCT+AGG - chr2_2:66460105-66460124 None:intergenic 25.0%
! AGTGATAATTCTCAAAACTT+TGG - chr2_2:66460491-66460510 None:intergenic 25.0%
! CTGATATATTAAGAATTGAG+AGG + chr2_2:66460509-66460528 Msa0266000:CDS 25.0%
! CTCAAGAATAATTGTCTAAA+AGG + chr2_2:66460574-66460593 Msa0266000:intron 25.0%
! ATGTAATAGGTATATAGGTT+GGG + chr2_2:66460620-66460639 Msa0266000:intron 25.0%
!! AATAATCAAGAGCATAATGA+GGG + chr2_2:66460793-66460812 Msa0266000:CDS 25.0%
!!! TAGACAAAACAAAAAGTACT+CGG + chr2_2:66460828-66460847 Msa0266000:intron 25.0%
! AGAGCATAAAGAAACATAAA+TGG - chr2_2:66460915-66460934 None:intergenic 25.0%
! ATTTATGTTTCTTTATGCTC+TGG + chr2_2:66460914-66460933 Msa0266000:intron 25.0%
! TTTATGTTTCTTTATGCTCT+GGG + chr2_2:66460915-66460934 Msa0266000:intron 25.0%
!! TTTAGGTTTAATTGCATGAT+TGG + chr2_2:66460992-66461011 Msa0266000:intron 25.0%
! GAAACCTAAAATAAACGTAA+GGG - chr2_2:66461019-66461038 None:intergenic 25.0%
! TGAAACCTAAAATAAACGTA+AGG - chr2_2:66461020-66461039 None:intergenic 25.0%
!!! GTTTATTTTAGGTTTCAAGT+TGG + chr2_2:66461023-66461042 Msa0266000:intron 25.0%
! ATTGTAATGTTAGTAACGTT+CGG - chr2_2:66461079-66461098 None:intergenic 25.0%
!!! GATTTGTCAGTTTTATAGAA+TGG + chr2_2:66461429-66461448 Msa0266000:intron 25.0%
! ATACACATAGATTGTTAGTT+GGG - chr2_2:66461751-66461770 None:intergenic 25.0%
! AATACACATAGATTGTTAGT+TGG - chr2_2:66461752-66461771 None:intergenic 25.0%
! AAATACCGCTTTATATTTGT+TGG + chr2_2:66461904-66461923 Msa0266000:intron 25.0%
!!! ATTTTTAGAAGCATGTACAT+TGG - chr2_2:66462130-66462149 None:intergenic 25.0%
! TTCTCCAAATGATACTAATT+TGG + chr2_2:66462168-66462187 Msa0266000:CDS 25.0%
! ATTAATGGAGTCCTAATTAT+TGG + chr2_2:66462587-66462606 Msa0266000:CDS 25.0%
!!! ACTCTTTTGATTGAATCTTA+TGG + chr2_2:66462959-66462978 Msa0266000:three_prime_UTR 25.0%
! AGAAATGGGATCATAATATA+TGG + chr2_2:66463049-66463068 Msa0266000:three_prime_UTR 25.0%
!!! GTTGTTTTTGTTTAGATGAT+TGG + chr2_2:66463190-66463209 Msa0266000:three_prime_UTR 25.0%
ACTGAAATTGAAAAACGAAG+AGG + chr2_2:66458245-66458264 Msa0266000:five_prime_UTR 30.0%
AAAAACGAAGAGGAGAATTA+GGG + chr2_2:66458255-66458274 Msa0266000:five_prime_UTR 30.0%
! CGAGTTTTTGTGTATTCAAA+CGG - chr2_2:66458409-66458428 None:intergenic 30.0%
GCTGAAAAATCCTTACAAAA+CGG + chr2_2:66458457-66458476 Msa0266000:intron 30.0%
!! TCTATTTTTCCCCTTTGATT+TGG + chr2_2:66458606-66458625 Msa0266000:intron 30.0%
!! CTATTTTTCCCCTTTGATTT+GGG + chr2_2:66458607-66458626 Msa0266000:intron 30.0%
TTCAATCAACCCAAATCAAA+GGG - chr2_2:66458619-66458638 None:intergenic 30.0%
TTTCAATCAACCCAAATCAA+AGG - chr2_2:66458620-66458639 None:intergenic 30.0%
GAAAACTACAAGTTATTCCA+TGG - chr2_2:66458706-66458725 None:intergenic 30.0%
GCAAAATTATCTCCATGTTA+AGG + chr2_2:66458973-66458992 Msa0266000:intron 30.0%
TCAAATAAGTCGATCCAAAA+AGG - chr2_2:66459000-66459019 None:intergenic 30.0%
! AAAATCACAAAGGCTCTTTT+AGG - chr2_2:66459267-66459286 None:intergenic 30.0%
ACATAGAGCTAAAATCACAA+AGG - chr2_2:66459277-66459296 None:intergenic 30.0%
!!! TAGACAGTCACTATTTTTTC+AGG + chr2_2:66459467-66459486 Msa0266000:CDS 30.0%
GAAATCTTAATGAGGAAGAA+TGG + chr2_2:66459970-66459989 Msa0266000:CDS 30.0%
AAGAATGGGTAACAGTATAT+GGG + chr2_2:66459985-66460004 Msa0266000:CDS 30.0%
! TTACATTTGGTTTACCGATA+AGG + chr2_2:66460033-66460052 Msa0266000:intron 30.0%
ACACTACTATCATTCCTTAT+CGG - chr2_2:66460050-66460069 None:intergenic 30.0%
AAGGATTTGTCCTAGAAATA+TGG + chr2_2:66460092-66460111 Msa0266000:intron 30.0%
TCATACACAATCACATATGT+TGG + chr2_2:66460345-66460364 Msa0266000:intron 30.0%
! AAAACATTTGATTTCAGCAG+AGG + chr2_2:66460448-66460467 Msa0266000:intron 30.0%
GAGGTAATCAGTTAGAATAT+TGG + chr2_2:66460528-66460547 Msa0266000:intron 30.0%
GTTAGAATATTGGCAAAGTT+TGG + chr2_2:66460538-66460557 Msa0266000:intron 30.0%
AGAATAATTGTCTAAAAGGG+TGG + chr2_2:66460578-66460597 Msa0266000:intron 30.0%
ATTTCCATCCATGATGTAAT+AGG + chr2_2:66460607-66460626 Msa0266000:intron 30.0%
TATACCTATTACATCATGGA+TGG - chr2_2:66460614-66460633 None:intergenic 30.0%
CCTATATACCTATTACATCA+TGG - chr2_2:66460618-66460637 None:intergenic 30.0%
CCATGATGTAATAGGTATAT+AGG + chr2_2:66460615-66460634 Msa0266000:intron 30.0%
GATGTAATAGGTATATAGGT+TGG + chr2_2:66460619-66460638 Msa0266000:intron 30.0%
ATTTCCATCCATGATGTAAT+AGG + chr2_2:66460607-66460626 Msa0266000:intron 30.0%
TATACCTATTACATCATGGA+TGG - chr2_2:66460614-66460633 None:intergenic 30.0%
CCTATATACCTATTACATCA+TGG - chr2_2:66460618-66460637 None:intergenic 30.0%
CCATGATGTAATAGGTATAT+AGG + chr2_2:66460615-66460634 Msa0266000:intron 30.0%
! GAATAATCAAGAGCATAATG+AGG + chr2_2:66460792-66460811 Msa0266000:CDS 30.0%
!! AGACAAAACAAAAAGTACTC+GGG + chr2_2:66460829-66460848 Msa0266000:intron 30.0%
ATTAGGACATTATCTTAGAG+GGG - chr2_2:66460880-66460899 None:intergenic 30.0%
CATTAGGACATTATCTTAGA+GGG - chr2_2:66460881-66460900 None:intergenic 30.0%
!! CTCTAAGATAATGTCCTAAT+GGG + chr2_2:66460880-66460899 Msa0266000:intron 30.0%
AATGGAAAATAACACCCATT+AGG - chr2_2:66460897-66460916 None:intergenic 30.0%
TTGTAATGTTAGTAACGTTC+GGG - chr2_2:66461078-66461097 None:intergenic 30.0%
!! TTTTGTTTAAAACGTCCACA+TGG + chr2_2:66461121-66461140 Msa0266000:intron 30.0%
AGAGTTAACTCAAAATTCGA+CGG + chr2_2:66461194-66461213 Msa0266000:intron 30.0%
! GTTTACTTTAGGTTTCAAAC+TGG - chr2_2:66461287-66461306 None:intergenic 30.0%
TGAAACCTAAAGTAAACGTT+AGG + chr2_2:66461290-66461309 Msa0266000:intron 30.0%
GAAACCTAAAGTAAACGTTA+GGG + chr2_2:66461291-66461310 Msa0266000:intron 30.0%
AAACCTAAAGTAAACGTTAG+GGG + chr2_2:66461292-66461311 Msa0266000:intron 30.0%
ATAAGGCTAAATTGCATGTT+TGG - chr2_2:66461319-66461338 None:intergenic 30.0%
! CAGTGTACTTGCTAAAAATA+AGG - chr2_2:66461336-66461355 None:intergenic 30.0%
TAAGGGATTAACAATACCTA+TGG + chr2_2:66461385-66461404 Msa0266000:intron 30.0%
! ATCATTTTGTATCCGTTGAT+GGG - chr2_2:66461703-66461722 None:intergenic 30.0%
! AATCATTTTGTATCCGTTGA+TGG - chr2_2:66461704-66461723 None:intergenic 30.0%
ATCTATGTGTATTGTTTCCA+AGG + chr2_2:66461759-66461778 Msa0266000:intron 30.0%
TCTATGTGTATTGTTTCCAA+GGG + chr2_2:66461760-66461779 Msa0266000:intron 30.0%
TAAAAATAAAAGGTTGCCCT+TGG - chr2_2:66461779-66461798 None:intergenic 30.0%
! GTATAATCTTGTGAAGCTTT+TGG + chr2_2:66461801-66461820 Msa0266000:intron 30.0%
GCTCTTGAATATCTTTGATT+AGG + chr2_2:66461831-66461850 Msa0266000:intron 30.0%
GTAGCTGCAAAAAGTTTAAT+AGG - chr2_2:66461857-66461876 None:intergenic 30.0%
ACCTTCCAACAAATATAAAG+CGG - chr2_2:66461912-66461931 None:intergenic 30.0%
! TATTCACCACTTCTCTAAAA+AGG - chr2_2:66461939-66461958 None:intergenic 30.0%
ATAGATAATTGATTGTGCTG+AGG + chr2_2:66462042-66462061 Msa0266000:intron 30.0%
TAGATAATTGATTGTGCTGA+GGG + chr2_2:66462043-66462062 Msa0266000:intron 30.0%
TTAAGGGAGTTTGAAAAATG+TGG + chr2_2:66462193-66462212 Msa0266000:CDS 30.0%
!!! GAAATTTTGAAACATGTTCC+TGG + chr2_2:66462217-66462236 Msa0266000:CDS 30.0%
AATCATAGTATTCAAGCAAG+AGG - chr2_2:66462292-66462311 None:intergenic 30.0%
GCACTACTAAATACATTTCT+TGG + chr2_2:66462511-66462530 Msa0266000:intron 30.0%
!! CAATATTTTACTCTCTGAAG+AGG + chr2_2:66462896-66462915 Msa0266000:three_prime_UTR 30.0%
!! ATTGTTCATTTGATTTGAGC+TGG + chr2_2:66462929-66462948 Msa0266000:three_prime_UTR 30.0%
TAACACTGCAATCTTATGAA+TGG + chr2_2:66462994-66463013 Msa0266000:three_prime_UTR 30.0%
GGATCATAATATATGGATAC+AGG + chr2_2:66463056-66463075 Msa0266000:three_prime_UTR 30.0%
GAAAAACGAAGAGGAGAATT+AGG + chr2_2:66458254-66458273 Msa0266000:five_prime_UTR 35.0%
!!! GGAGAATTAGGGTTTTGAAT+CGG + chr2_2:66458266-66458285 Msa0266000:five_prime_UTR 35.0%
!!! GAGAATTAGGGTTTTGAATC+GGG + chr2_2:66458267-66458286 Msa0266000:five_prime_UTR 35.0%
!! TTAATCGGTTCCGTTTTGTA+AGG - chr2_2:66458470-66458489 None:intergenic 35.0%
TACAAAACGGAACCGATTAA+CGG + chr2_2:66458470-66458489 Msa0266000:intron 35.0%
AAAGGAAAAGACCCGTTAAT+CGG - chr2_2:66458485-66458504 None:intergenic 35.0%
TCAATCAACCCAAATCAAAG+GGG - chr2_2:66458618-66458637 None:intergenic 35.0%
! CTGAAAATAGCTTGTGAACA+TGG - chr2_2:66458832-66458851 None:intergenic 35.0%
! GCGTGAAAACTTTGGTAATT+CGG + chr2_2:66459566-66459585 Msa0266000:CDS 35.0%
CTATCTTCCAAGGTGAAAAA+AGG - chr2_2:66459606-66459625 None:intergenic 35.0%
AAAGTCTGATCTATCTTCCA+AGG - chr2_2:66459616-66459635 None:intergenic 35.0%
TTATTGTCTGACTTAGTCTC+AGG - chr2_2:66459675-66459694 None:intergenic 35.0%
! TCTCTATTTGGAGTTTGGAT+GGG - chr2_2:66459702-66459721 None:intergenic 35.0%
! TTCTCTATTTGGAGTTTGGA+TGG - chr2_2:66459703-66459722 None:intergenic 35.0%
GGAGTCGAAAATTCTCTATT+TGG - chr2_2:66459714-66459733 None:intergenic 35.0%
TCTTAAAGCATAAGATGTGC+TGG - chr2_2:66459757-66459776 None:intergenic 35.0%
! AGCACATCTTATGCTTTAAG+AGG + chr2_2:66459756-66459775 Msa0266000:CDS 35.0%
!! GCACATCTTATGCTTTAAGA+GGG + chr2_2:66459757-66459776 Msa0266000:CDS 35.0%
!! CACATCTTATGCTTTAAGAG+GGG + chr2_2:66459758-66459777 Msa0266000:CDS 35.0%
ATTAAGATTTCCTGCAGGTA+AGG - chr2_2:66459961-66459980 None:intergenic 35.0%
GAAGAATGGGTAACAGTATA+TGG + chr2_2:66459984-66460003 Msa0266000:CDS 35.0%
AATAAGTTGTGTTGTGCTAC+AGG - chr2_2:66460243-66460262 None:intergenic 35.0%
TCATAGTCGTCTTTACAATC+TGG - chr2_2:66460266-66460285 None:intergenic 35.0%
AGAATATTGGCAAAGTTTGG+TGG + chr2_2:66460541-66460560 Msa0266000:intron 35.0%
ATTGTCTAAAAGGGTGGTAA+TGG + chr2_2:66460584-66460603 Msa0266000:intron 35.0%
! TAATAGGTATATAGGTTGGG+TGG + chr2_2:66460623-66460642 Msa0266000:intron 35.0%
! GCTAAAATCATATTTGCTGC+AGG + chr2_2:66460719-66460738 Msa0266000:intron 35.0%
!! GACAAAACAAAAAGTACTCG+GGG + chr2_2:66460830-66460849 Msa0266000:intron 35.0%
TAACTTCCTCTCTGCAAAAA+AGG - chr2_2:66460856-66460875 None:intergenic 35.0%
CCATTAGGACATTATCTTAG+AGG - chr2_2:66460882-66460901 None:intergenic 35.0%
!! CCTCTAAGATAATGTCCTAA+TGG + chr2_2:66460879-66460898 Msa0266000:intron 35.0%
!! TGGTCCCTTACGTTTATTTT+AGG + chr2_2:66461012-66461031 Msa0266000:intron 35.0%
TAACTCAAAATTCGACGGAA+AGG + chr2_2:66461199-66461218 Msa0266000:intron 35.0%
ATGCTGACATCAGTAACATA+AGG + chr2_2:66461230-66461249 Msa0266000:intron 35.0%
TGCTGACATCAGTAACATAA+GGG + chr2_2:66461231-66461250 Msa0266000:intron 35.0%
ACAATACCTATGGCTATGTA+TGG + chr2_2:66461395-66461414 Msa0266000:intron 35.0%
!! TGTCAGTTTTATAGAATGGC+TGG + chr2_2:66461433-66461452 Msa0266000:intron 35.0%
GCAAAAATCATAGCTAGTTC+CGG + chr2_2:66461488-66461507 Msa0266000:intron 35.0%
! TGGGGCAATTTGTATTTTGT+AGG - chr2_2:66461684-66461703 None:intergenic 35.0%
AATACAAATTGCCCCATCAA+CGG + chr2_2:66461688-66461707 Msa0266000:intron 35.0%
! TCATTTTGTATCCGTTGATG+GGG - chr2_2:66461702-66461721 None:intergenic 35.0%
GTTAGTTGGGCAAGAAAAAT+GGG - chr2_2:66461738-66461757 None:intergenic 35.0%
TGTTAGTTGGGCAAGAAAAA+TGG - chr2_2:66461739-66461758 None:intergenic 35.0%
! ACCGCTTTATATTTGTTGGA+AGG + chr2_2:66461908-66461927 Msa0266000:intron 35.0%
AATGGTTTATTGAATCGGTG+AGG - chr2_2:66462072-66462091 None:intergenic 35.0%
!! CACCGATTCAATAAACCATT+TGG + chr2_2:66462072-66462091 Msa0266000:intron 35.0%
GGCCAAATGGTTTATTGAAT+CGG - chr2_2:66462077-66462096 None:intergenic 35.0%
TATACTCTTGAATGGCCAAA+TGG - chr2_2:66462090-66462109 None:intergenic 35.0%
ACAATGTCAAAATAGCTGGA+TGG - chr2_2:66462368-66462387 None:intergenic 35.0%
GACAACAATGTCAAAATAGC+TGG - chr2_2:66462372-66462391 None:intergenic 35.0%
AAAACCACTTCAGAGTAACA+AGG - chr2_2:66462453-66462472 None:intergenic 35.0%
TTGTTAACCACCCTGATATT+AGG + chr2_2:66462484-66462503 Msa0266000:intron 35.0%
TAGTGCATAGCCTAATATCA+GGG - chr2_2:66462497-66462516 None:intergenic 35.0%
CAAAATGCTCTCAACAAGAA+TGG + chr2_2:66462557-66462576 Msa0266000:CDS 35.0%
AGGGTTTCACACCAATAATT+AGG - chr2_2:66462601-66462620 None:intergenic 35.0%
AATTATTGGTGTGAAACCCT+TGG + chr2_2:66462601-66462620 Msa0266000:CDS 35.0%
! CTTTTGATGTGCTTACTTCT+GGG - chr2_2:66462706-66462725 None:intergenic 35.0%
TTGCCATTCTGCAGATAATA+TGG - chr2_2:66462740-66462759 None:intergenic 35.0%
! TGGATGCTAAGGATTTTGTT+GGG - chr2_2:66462799-66462818 None:intergenic 35.0%
! TTGGATGCTAAGGATTTTGT+TGG - chr2_2:66462800-66462819 None:intergenic 35.0%
AAACATCAAGTCCATGATCT+TGG - chr2_2:66462819-66462838 None:intergenic 35.0%
!! TTTTACTCTCTGAAGAGGTT+CGG + chr2_2:66462901-66462920 Msa0266000:three_prime_UTR 35.0%
!!! TGGTCACATGTTTTGAGAAA+TGG + chr2_2:66463034-66463053 Msa0266000:three_prime_UTR 35.0%
!!! GGTCACATGTTTTGAGAAAT+GGG + chr2_2:66463035-66463054 Msa0266000:three_prime_UTR 35.0%
!! TGTGCTGACACTTAAGATTT+TGG + chr2_2:66463109-66463128 Msa0266000:three_prime_UTR 35.0%
GTGATGTAATTCATCTCACT+TGG + chr2_2:66463164-66463183 Msa0266000:three_prime_UTR 35.0%
TTTCAGTGAGAAGAGAACGT+TGG - chr2_2:66458232-66458251 None:intergenic 40.0%
!!! AATTAGGGTTTTGAATCGGG+AGG + chr2_2:66458270-66458289 Msa0266000:five_prime_UTR 40.0%
!!! ATTAGGGTTTTGAATCGGGA+GGG + chr2_2:66458271-66458290 Msa0266000:five_prime_UTR 40.0%
ACAAAACGGAACCGATTAAC+GGG + chr2_2:66458471-66458490 Msa0266000:intron 40.0%
CTGTGTTACAGAATCTCTCA+TGG + chr2_2:66458565-66458584 Msa0266000:intron 40.0%
TGTTACAGAATCTCTCATGG+TGG + chr2_2:66458568-66458587 Msa0266000:intron 40.0%
ATGTTCTAGTATTCAGCCCA+TGG + chr2_2:66458686-66458705 Msa0266000:intron 40.0%
TAAGCACTTCTGACACTGTT+TGG + chr2_2:66458782-66458801 Msa0266000:intron 40.0%
AAGCACTTCTGACACTGTTT+GGG + chr2_2:66458783-66458802 Msa0266000:intron 40.0%
ATCCAAAAAGGCCCTTAACA+TGG - chr2_2:66458988-66459007 None:intergenic 40.0%
!! TATTCACTTGTGAGAGTGCT+TGG + chr2_2:66459035-66459054 Msa0266000:intron 40.0%
!! ATTCACTTGTGAGAGTGCTT+GGG + chr2_2:66459036-66459055 Msa0266000:intron 40.0%
AAGTTATCCTGGTCAGCTTA+TGG - chr2_2:66459115-66459134 None:intergenic 40.0%
GCGATTGTCATAAGTTATCC+TGG - chr2_2:66459126-66459145 None:intergenic 40.0%
TCTCTATGGCGTGAAAACTT+TGG + chr2_2:66459558-66459577 Msa0266000:CDS 40.0%
TCTTCCAAGGTGAAAAAAGG+AGG - chr2_2:66459603-66459622 None:intergenic 40.0%
! TCAGACTTTTCTCCAGAATC+AGG + chr2_2:66459627-66459646 Msa0266000:CDS 40.0%
TAATCCAGTATGCCTGATTC+TGG - chr2_2:66459642-66459661 None:intergenic 40.0%
ACTTAGTCTCAGGAGACATT+TGG - chr2_2:66459665-66459684 None:intergenic 40.0%
! AAGGCTCGCTTAGTTTGAAT+TGG + chr2_2:66459796-66459815 Msa0266000:CDS 40.0%
TGAACAAGAGGAGAAAGGAA+GGG + chr2_2:66459845-66459864 Msa0266000:CDS 40.0%
ACCTGCAGGAAATCTTAATG+AGG + chr2_2:66459962-66459981 Msa0266000:CDS 40.0%
TCCTCATTAAGATTTCCTGC+AGG - chr2_2:66459966-66459985 None:intergenic 40.0%
TGTTGTGCTACAGGAAACAT+GGG - chr2_2:66460234-66460253 None:intergenic 40.0%
ACACAATCACATATGTTGGC+AGG + chr2_2:66460349-66460368 Msa0266000:intron 40.0%
CACAATCACATATGTTGGCA+GGG + chr2_2:66460350-66460369 Msa0266000:intron 40.0%
! GTATATAGGTTGGGTGGTAA+TGG + chr2_2:66460629-66460648 Msa0266000:intron 40.0%
AATTCCTGGTTTAGTGCAGT+AGG + chr2_2:66460941-66460960 Msa0266000:intron 40.0%
! TTTTCCTACTGCACTAAACC+AGG - chr2_2:66460948-66460967 None:intergenic 40.0%
TAAAACGTCCACATGGCTAA+CGG + chr2_2:66461128-66461147 Msa0266000:intron 40.0%
GGACACACAGATAACTTTGT+GGG + chr2_2:66461150-66461169 Msa0266000:intron 40.0%
ACCTATGGCTATGTATGGAT+TGG + chr2_2:66461400-66461419 Msa0266000:intron 40.0%
ACCAATCCATACATAGCCAT+AGG - chr2_2:66461404-66461423 None:intergenic 40.0%
! ACTTTTTGCAGCTACGTTTG+AGG + chr2_2:66461862-66461881 Msa0266000:intron 40.0%
!! GTACCTCCTTTTTAGAGAAG+TGG + chr2_2:66461930-66461949 Msa0266000:intron 40.0%
! TCACCACTTCTCTAAAAAGG+AGG - chr2_2:66461936-66461955 None:intergenic 40.0%
! CTGGATGCACATTTTGTATC+AGG + chr2_2:66462255-66462274 Msa0266000:CDS 40.0%
!! TTGGATTGGCACACAAGATA+CGG - chr2_2:66462339-66462358 None:intergenic 40.0%
TGTCAAAATAGCTGGATGGA+TGG - chr2_2:66462364-66462383 None:intergenic 40.0%
GTAGTGCATAGCCTAATATC+AGG - chr2_2:66462498-66462517 None:intergenic 40.0%
! GCTTTTGATGTGCTTACTTC+TGG - chr2_2:66462707-66462726 None:intergenic 40.0%
! GGATGCTAAGGATTTTGTTG+GGG - chr2_2:66462798-66462817 None:intergenic 40.0%
ATCCTTAGCATCCAAGATCA+TGG + chr2_2:66462805-66462824 Msa0266000:CDS 40.0%
! GCAGTCTAGATGATCTGTTT+TGG + chr2_2:66462839-66462858 Msa0266000:exon 40.0%
GAATGGCTATGATCAGTACT+TGG + chr2_2:66463011-66463030 Msa0266000:three_prime_UTR 40.0%
! TGGTGGCGAATTGAAGTGAA+GGG - chr2_2:66458345-66458364 None:intergenic 45.0%
! CTCCATGTTAAGGGCCTTTT+TGG + chr2_2:66458983-66459002 Msa0266000:intron 45.0%
!! TTCACTTGTGAGAGTGCTTG+GGG + chr2_2:66459037-66459056 Msa0266000:intron 45.0%
CGTATTTCCATAAGCTGACC+AGG + chr2_2:66459105-66459124 Msa0266000:intron 45.0%
CTACTTATTGCTCACCACTG+AGG + chr2_2:66459302-66459321 Msa0266000:intron 45.0%
! TTGGACTGGAAAACTTTCCC+CGG - chr2_2:66459518-66459537 None:intergenic 45.0%
!! CAGGAGCATCTTCTTCTCTA+TGG + chr2_2:66459544-66459563 Msa0266000:CDS 45.0%
TCCAAGGTGAAAAAAGGAGG+CGG - chr2_2:66459600-66459619 None:intergenic 45.0%
TTCTCCAGAATCAGGCATAC+TGG + chr2_2:66459635-66459654 Msa0266000:CDS 45.0%
! GAATTTTCGACTCCAGCGAA+AGG + chr2_2:66459720-66459739 Msa0266000:CDS 45.0%
!! AGCATAAGATGTGCTGGCTT+CGG - chr2_2:66459751-66459770 None:intergenic 45.0%
! TCAAACTAAGCGAGCCTTGT+TGG - chr2_2:66459794-66459813 None:intergenic 45.0%
! GCTCGCTTAGTTTGAATTGG+TGG + chr2_2:66459799-66459818 Msa0266000:CDS 45.0%
! AAAGAGTGGTGGTGAACAAG+AGG + chr2_2:66459833-66459852 Msa0266000:CDS 45.0%
GTGAACAAGAGGAGAAAGGA+AGG + chr2_2:66459844-66459863 Msa0266000:CDS 45.0%
GAACAAGAGGAGAAAGGAAG+GGG + chr2_2:66459846-66459865 Msa0266000:CDS 45.0%
GGAAGAGTAATCAATGCACC+AGG - chr2_2:66459897-66459916 None:intergenic 45.0%
AAGGAATTTCGCTGGACTTC+AGG - chr2_2:66459942-66459961 None:intergenic 45.0%
GTGTTGTGCTACAGGAAACA+TGG - chr2_2:66460235-66460254 None:intergenic 45.0%
AGACCACAACGTGGATAGTA+TGG + chr2_2:66460694-66460713 Msa0266000:intron 45.0%
TTGCTGCAGGAATTCCCATA+TGG + chr2_2:66460732-66460751 Msa0266000:intron 45.0%
! TCAAGAGCATAATGAGGGAC+AGG + chr2_2:66460798-66460817 Msa0266000:CDS 45.0%
! CAAGAGCATAATGAGGGACA+GGG + chr2_2:66460799-66460818 Msa0266000:CDS 45.0%
! TATGCTCTGGGTTGAATTCC+TGG + chr2_2:66460927-66460946 Msa0266000:intron 45.0%
AAAACGTCCACATGGCTAAC+GGG + chr2_2:66461129-66461148 Msa0266000:intron 45.0%
GGGACACACAGATAACTTTG+TGG + chr2_2:66461149-66461168 Msa0266000:intron 45.0%
GGTCCCCTAACGTTTACTTT+AGG - chr2_2:66461298-66461317 None:intergenic 45.0%
AACTGCAGTGAAGACTGTAG+CGG + chr2_2:66461456-66461475 Msa0266000:intron 45.0%
!! ACCATTTTAGCGGACATTCG+TGG - chr2_2:66461514-66461533 None:intergenic 45.0%
GCATCCAGTTAGCATCTCTA+GGG - chr2_2:66462243-66462262 None:intergenic 45.0%
TGCATCCAGTTAGCATCTCT+AGG - chr2_2:66462244-66462263 None:intergenic 45.0%
AATAGCTGGATGGATGGTCT+TGG - chr2_2:66462358-66462377 None:intergenic 45.0%
CACTTCAGAGTAACAAGGCA+TGG - chr2_2:66462448-66462467 None:intergenic 45.0%
! CATGCCTTGTTACTCTGAAG+TGG + chr2_2:66462446-66462465 Msa0266000:intron 45.0%
TGCATAGCCTAATATCAGGG+TGG - chr2_2:66462494-66462513 None:intergenic 45.0%
GTCAAAGCTTGACGTTGCAT+GGG - chr2_2:66462629-66462648 None:intergenic 45.0%
GCACATCAAAAGCTCCTTCT+CGG + chr2_2:66462714-66462733 Msa0266000:CDS 45.0%
TGCAGATAATATGGCCGAGA+AGG - chr2_2:66462731-66462750 None:intergenic 45.0%
CGGCCATATTATCTGCAGAA+TGG + chr2_2:66462734-66462753 Msa0266000:CDS 45.0%
AGAATGGCAATGCAACTGCA+AGG + chr2_2:66462750-66462769 Msa0266000:CDS 45.0%
! GGATTTTGTTGGGGAAGCAA+TGG - chr2_2:66462789-66462808 None:intergenic 45.0%
GTCCATGATCTTGGATGCTA+AGG - chr2_2:66462810-66462829 None:intergenic 45.0%
TGGCTATGATCAGTACTTGG+TGG + chr2_2:66463014-66463033 Msa0266000:three_prime_UTR 45.0%
!!! AATTTAGTTTAATTTTTATA+TGG - chr2_2:66458173-66458192 None:intergenic 5.0%
! GTGGTGGCGAATTGAAGTGA+AGG - chr2_2:66458346-66458365 None:intergenic 50.0%
!! AGAGAAGTACCTGGTAGTGG+TGG - chr2_2:66458365-66458384 None:intergenic 50.0%
!! GAGAGAGAAGTACCTGGTAG+TGG - chr2_2:66458368-66458387 None:intergenic 50.0%
!! AGAGAGGAGAGAGAAGTACC+TGG - chr2_2:66458374-66458393 None:intergenic 50.0%
ACGGTGCAGTATAGAGAGAG+AGG - chr2_2:66458390-66458409 None:intergenic 50.0%
!! TCACTTGTGAGAGTGCTTGG+GGG + chr2_2:66459038-66459057 Msa0266000:intron 50.0%
AGTGACTGTCTACCAGACCT+AGG - chr2_2:66459459-66459478 None:intergenic 50.0%
! TTTTCCAGTCCAAGCCAGTC+AGG + chr2_2:66459525-66459544 Msa0266000:CDS 50.0%
GAGAAGAAGATGCTCCTGAC+TGG - chr2_2:66459542-66459561 None:intergenic 50.0%
TGAAAAAAGGAGGCGGAGGA+AGG - chr2_2:66459593-66459612 None:intergenic 50.0%
AAGGTGAAAAAAGGAGGCGG+AGG - chr2_2:66459597-66459616 None:intergenic 50.0%
!!! TCCGCCTCCTTTTTTCACCT+TGG + chr2_2:66459596-66459615 Msa0266000:CDS 50.0%
TGTTCACCACCACTCTTTGC+AGG - chr2_2:66459831-66459850 None:intergenic 50.0%
GGTGGTGAACAAGAGGAGAA+AGG + chr2_2:66459840-66459859 Msa0266000:CDS 50.0%
CTGCAGGTAAGGAATTTCGC+TGG - chr2_2:66459950-66459969 None:intergenic 50.0%
CAGCGAAATTCCTTACCTGC+AGG + chr2_2:66459948-66459967 Msa0266000:CDS 50.0%
GTAGATGTCAGACCACAACG+TGG + chr2_2:66460685-66460704 Msa0266000:intron 50.0%
CCACCATACTATCCACGTTG+TGG - chr2_2:66460700-66460719 None:intergenic 50.0%
CCACAACGTGGATAGTATGG+TGG + chr2_2:66460697-66460716 Msa0266000:intron 50.0%
TGCAGGAATTCCCATATGGC+AGG + chr2_2:66460736-66460755 Msa0266000:intron 50.0%
GGAATTCCCATATGGCAGGT+AGG + chr2_2:66460740-66460759 Msa0266000:intron 50.0%
CTCACTCCTACCTGCCATAT+GGG - chr2_2:66460749-66460768 None:intergenic 50.0%
! ATAACTTTGTGGGTGCCACG+TGG + chr2_2:66461160-66461179 Msa0266000:intron 50.0%
! CTCTGTCTGAAACAACCACG+TGG - chr2_2:66461178-66461197 None:intergenic 50.0%
!! TTTTAGCGGACATTCGTGGC+CGG - chr2_2:66461510-66461529 None:intergenic 50.0%
GCCACGAATGTCCGCTAAAA+TGG + chr2_2:66461510-66461529 Msa0266000:intron 50.0%
! CTGGATGGATGGTCTTGGAT+TGG - chr2_2:66462353-66462372 None:intergenic 50.0%
TGACGTTGCATGGGATCCAA+GGG - chr2_2:66462620-66462639 None:intergenic 50.0%
TTGACGTTGCATGGGATCCA+AGG - chr2_2:66462621-66462640 None:intergenic 50.0%
AATGCAACTGCAAGGCAGAC+TGG + chr2_2:66462758-66462777 Msa0266000:CDS 50.0%
AATTCGCCACCACCACTACC+AGG + chr2_2:66458353-66458372 Msa0266000:five_prime_UTR 55.0%
!! GAAGTACCTGGTAGTGGTGG+TGG - chr2_2:66458362-66458381 None:intergenic 55.0%
! GAGCTGAGAGCATACCTCAG+TGG - chr2_2:66459319-66459338 None:intergenic 55.0%
CCTAGGAGTTCTTTGCGCTG+TGG - chr2_2:66459442-66459461 None:intergenic 55.0%
CCACAGCGCAAAGAACTCCT+AGG + chr2_2:66459439-66459458 Msa0266000:CDS 55.0%
GCGCAAAGAACTCCTAGGTC+TGG + chr2_2:66459444-66459463 Msa0266000:CDS 55.0%
ACTGGAAAACTTTCCCCGGC+GGG - chr2_2:66459514-66459533 None:intergenic 55.0%
GACTGGAAAACTTTCCCCGG+CGG - chr2_2:66459515-66459534 None:intergenic 55.0%
! GAAGATGCTCCTGACTGGCT+TGG - chr2_2:66459537-66459556 None:intergenic 55.0%
GGGGTGCAGCAAAACCAACA+AGG + chr2_2:66459777-66459796 Msa0266000:CDS 55.0%
TGGTCGTCACCTGCAAAGAG+TGG + chr2_2:66459819-66459838 Msa0266000:CDS 55.0%
TCGTCACCTGCAAAGAGTGG+TGG + chr2_2:66459822-66459841 Msa0266000:CDS 55.0%
TCTTCCTCCACCACCAGAAG+TGG + chr2_2:66459911-66459930 Msa0266000:CDS 55.0%
! ACTTCAGGCCTTGCCACTTC+TGG - chr2_2:66459927-66459946 None:intergenic 55.0%
CCTCACTCCTACCTGCCATA+TGG - chr2_2:66460750-66460769 None:intergenic 55.0%
CCATATGGCAGGTAGGAGTG+AGG + chr2_2:66460747-66460766 Msa0266000:CDS 55.0%
GCATAATGAGGGACAGGGTG+AGG + chr2_2:66460804-66460823 Msa0266000:CDS 55.0%
!!! TCGGGGCCTTTTTTGCAGAG+AGG + chr2_2:66460847-66460866 Msa0266000:intron 55.0%
TGTGTGTCCCGTTAGCCATG+TGG - chr2_2:66461139-66461158 None:intergenic 55.0%
!! CAGTTAGCATCTCTAGGGCC+AGG - chr2_2:66462238-66462257 None:intergenic 55.0%
CTGGCCCTAGAGATGCTAAC+TGG + chr2_2:66462236-66462255 Msa0266000:CDS 55.0%
CTGGCAGTGGGTAGAGGTAA+GGG - chr2_2:66462680-66462699 None:intergenic 55.0%
TGTGCTTACTTCTGGGTGCC+TGG - chr2_2:66462699-66462718 None:intergenic 55.0%
CATCCCCTGTTAATGCCCGC+CGG + chr2_2:66459496-66459515 Msa0266000:CDS 60.0%
ATCCCCTGTTAATGCCCGCC+GGG + chr2_2:66459497-66459516 Msa0266000:CDS 60.0%
TTCCCCGGCGGGCATTAACA+GGG - chr2_2:66459503-66459522 None:intergenic 60.0%
TTTCCCCGGCGGGCATTAAC+AGG - chr2_2:66459504-66459523 None:intergenic 60.0%
!! TGCTCCTGACTGGCTTGGAC+TGG - chr2_2:66459532-66459551 None:intergenic 60.0%
GCTTCGGACTTGCCTTTCGC+TGG - chr2_2:66459735-66459754 None:intergenic 60.0%
AGGAAGGGGTTCTCCAGTCG+AGG + chr2_2:66459860-66459879 Msa0266000:CDS 60.0%
GGAAGGGGTTCTCCAGTCGA+GGG + chr2_2:66459861-66459880 Msa0266000:CDS 60.0%
!! CTTGCCACTTCTGGTGGTGG+AGG - chr2_2:66459918-66459937 None:intergenic 60.0%
CTCCACCACCAGAAGTGGCA+AGG + chr2_2:66459916-66459935 Msa0266000:CDS 60.0%
! TCAGGCCTTGCCACTTCTGG+TGG - chr2_2:66459924-66459943 None:intergenic 60.0%
CCTGGCAGTGGGTAGAGGTA+AGG - chr2_2:66462681-66462700 None:intergenic 60.0%
CCTTACCTCTACCCACTGCC+AGG + chr2_2:66462678-66462697 Msa0266000:CDS 60.0%
ACTTCTGGGTGCCTGGCAGT+GGG - chr2_2:66462692-66462711 None:intergenic 60.0%
TACTTCTGGGTGCCTGGCAG+TGG - chr2_2:66462693-66462712 None:intergenic 60.0%
GCAACTGCAAGGCAGACTGG+AGG + chr2_2:66462761-66462780 Msa0266000:CDS 60.0%
TCCCCTGTTAATGCCCGCCG+GGG + chr2_2:66459498-66459517 Msa0266000:CDS 65.0%
TCCCCGGCGGGCATTAACAG+GGG - chr2_2:66459502-66459521 None:intergenic 65.0%
GGGTTCTCCAGTCGAGGGTG+TGG + chr2_2:66459866-66459885 Msa0266000:CDS 65.0%
GGCTGAACCACACCCTCGAC+TGG - chr2_2:66459876-66459895 None:intergenic 65.0%
! GTCGAGGGTGTGGTTCAGCC+TGG + chr2_2:66459876-66459895 Msa0266000:CDS 65.0%
! GGCCTTGCCACTTCTGGTGG+TGG - chr2_2:66459921-66459940 None:intergenic 65.0%
GGGTGCCTGGCAGTGGGTAG+AGG - chr2_2:66462686-66462705 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 66458149 66463226 66458149 ID=Msa0266000;Name=Msa0266000
chr2_2 mRNA 66458149 66463226 66458149 ID=Msa0266000-mRNA-1;Parent=Msa0266000;Name=Msa0266000-mRNA-1;_AED=0.08;_eAED=0.12;_QI=264|0.4|0.66|0.83|0.6|0.5|6|379|385
chr2_2 exon 66458149 66458374 66458149 ID=Msa0266000-mRNA-1:exon:21038;Parent=Msa0266000-mRNA-1
chr2_2 exon 66459394 66460006 66459394 ID=Msa0266000-mRNA-1:exon:21039;Parent=Msa0266000-mRNA-1
chr2_2 exon 66460468 66460530 66460468 ID=Msa0266000-mRNA-1:exon:21040;Parent=Msa0266000-mRNA-1
chr2_2 exon 66460741 66460842 66460741 ID=Msa0266000-mRNA-1:exon:21041;Parent=Msa0266000-mRNA-1
chr2_2 exon 66462165 66462276 66462165 ID=Msa0266000-mRNA-1:exon:21042;Parent=Msa0266000-mRNA-1
chr2_2 exon 66462542 66463226 66462542 ID=Msa0266000-mRNA-1:exon:21043;Parent=Msa0266000-mRNA-1
chr2_2 five_prime_UTR 66458149 66458374 66458149 ID=Msa0266000-mRNA-1:five_prime_utr;Parent=Msa0266000-mRNA-1
chr2_2 five_prime_UTR 66459394 66459431 66459394 ID=Msa0266000-mRNA-1:five_prime_utr;Parent=Msa0266000-mRNA-1
chr2_2 CDS 66459432 66460006 66459432 ID=Msa0266000-mRNA-1:cds;Parent=Msa0266000-mRNA-1
chr2_2 CDS 66460468 66460530 66460468 ID=Msa0266000-mRNA-1:cds;Parent=Msa0266000-mRNA-1
chr2_2 CDS 66460741 66460842 66460741 ID=Msa0266000-mRNA-1:cds;Parent=Msa0266000-mRNA-1
chr2_2 CDS 66462165 66462276 66462165 ID=Msa0266000-mRNA-1:cds;Parent=Msa0266000-mRNA-1
chr2_2 CDS 66462542 66462847 66462542 ID=Msa0266000-mRNA-1:cds;Parent=Msa0266000-mRNA-1
chr2_2 three_prime_UTR 66462848 66463226 66462848 ID=Msa0266000-mRNA-1:three_prime_utr;Parent=Msa0266000-mRNA-1
Gene Sequence

>Msa0266000

ATGAGCACCACAGCGCAAAGAACTCCTAGGTCTGGTAGACAGTCACTATTTTTTCAGGATTTAGCATCCCCTGTTAATGCCCGCCGGGGAAAGTTTTCCAGTCCAAGCCAGTCAGGAGCATCTTCTTCTCTATGGCGTGAAAACTTTGGTAATTCGGACCTTCCTCCGCCTCCTTTTTTCACCTTGGAAGATAGATCAGACTTTTCTCCAGAATCAGGCATACTGGATTACCAAATGTCTCCTGAGACTAAGTCAGACAATAAAACTCCCATCCAAACTCCAAATAGAGAATTTTCGACTCCAGCGAAAGGCAAGTCCGAAGCCAGCACATCTTATGCTTTAAGAGGGGTGCAGCAAAACCAACAAGGCTCGCTTAGTTTGAATTGGTGGTCGTCACCTGCAAAGAGTGGTGGTGAACAAGAGGAGAAAGGAAGGGGTTCTCCAGTCGAGGGTGTGGTTCAGCCTGGTGCATTGATTACTCTTCCTCCACCACCAGAAGTGGCAAGGCCTGAAGTCCAGCGAAATTCCTTACCTGCAGGAAATCTTAATGAGGAAGAATGGGTAACAGTATATGGAGGCTTTGTGCTTCTCACTGCCAAAGTTTTGAGAATTATCACTGATATATTAAGAATTGAGAGGAATTCCCATATGGCAGGTAGGAGTGAGGAAATATTGAGTTTTGTTTCAGAGAATAATCAAGAGCATAATGAGGGACAGGGTGAGGATAGACAAAACAAAAAATTTTCTCCAAATGATACTAATTTGGTTTTAAGGGAGTTTGAAAAATGTGGTGAAATTTTGAAACATGTTCCTGGCCCTAGAGATGCTAACTGGATGCACATTTTGTATCAGAATCGATCTGCTGCACAAAATGCTCTCAACAAGAATGGAATACAAATTAATGGAGTCCTAATTATTGGTGTGAAACCCTTGGATCCCATGCAACGTCAAGCTTTGACCGAAAGGCTTAACAATCAAGGATTTATGCCCTTACCTCTACCCACTGCCAGGCACCCAGAAGTAAGCACATCAAAAGCTCCTTCTCGGCCATATTATCTGCAGAATGGCAATGCAACTGCAAGGCAGACTGGAGGTACCATTGCTTCCCCAACAAAATCCTTAGCATCCAAGATCATGGACTTGATGTTTGCAGTCTAG

Protein sequence

>Msa0266000

MSTTAQRTPRSGRQSLFFQDLASPVNARRGKFSSPSQSGASSSLWRENFGNSDLPPPPFFTLEDRSDFSPESGILDYQMSPETKSDNKTPIQTPNREFSTPAKGKSEASTSYALRGVQQNQQGSLSLNWWSSPAKSGGEQEEKGRGSPVEGVVQPGALITLPPPPEVARPEVQRNSLPAGNLNEEEWVTVYGGFVLLTAKVLRIITDILRIERNSHMAGRSEEILSFVSENNQEHNEGQGEDRQNKKFSPNDTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSAAQNALNKNGIQINGVLIIGVKPLDPMQRQALTERLNNQGFMPLPLPTARHPEVSTSKAPSRPYYLQNGNATARQTGGTIASPTKSLASKIMDLMFAV*