AlfalfaGEDB | Msa0713640

M. sativa cultivar zhongmu-4 / Msa0713640

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713640	XP_003611496.1	83.908	174	28	0	1	174	134	307	4.41e-94	285

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713640	sp\|Q9T072\|BH025_ARATH	49.133	173	81	3	1	169	155	324	3.57e-45	154

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713640	G7K128	83.908	174	28	0	1	174	134	307	2.11e-94	285

TFs/TRs:

Gene ID	Type	Classification
Msa0713640	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006110	Msa0713640	0.805617	1.224533e-49	-8.615850e-47
Msa0011500	Msa0713640	0.800118	1.674576e-48	-8.615850e-47
Msa0022310	Msa0713640	0.801939	7.106913e-49	-8.615850e-47
Msa0036920	Msa0713640	0.800570	1.354434e-48	-8.615850e-47
Msa0045790	Msa0713640	0.817730	2.833166e-52	-8.615850e-47
Msa0046160	Msa0713640	0.814270	1.677866e-51	-8.615850e-47
Msa0074240	Msa0713640	0.815652	8.282909e-52	-8.615850e-47
Msa0095560	Msa0713640	0.800521	1.386287e-48	-8.615850e-47
Msa0101810	Msa0713640	-0.813015	3.170145e-51	-8.615850e-47
Msa0647130	Msa0713640	0.801481	8.821752e-49	-8.615850e-47
Msa0682330	Msa0713640	0.808003	3.833894e-50	-8.615850e-47
Msa0691050	Msa0713640	0.823378	1.430738e-53	-8.615850e-47
Msa0693380	Msa0713640	0.802054	6.731455e-49	-8.615850e-47
Msa0713640	Msa0723990	0.824236	9.005425e-54	-8.615850e-47
Msa0713640	Msa0731940	0.804165	2.462220e-49	-8.615850e-47
Msa0713640	Msa0735170	0.806299	8.800491e-50	-8.615850e-47
Msa0713640	Msa0750240	0.800622	1.322231e-48	-8.615850e-47
Msa0713640	Msa0754660	0.867091	1.766131e-65	-8.615850e-47
Msa0713640	Msa0756630	-0.801535	8.599391e-49	-8.615850e-47
Msa0713640	Msa0760130	0.808870	2.504578e-50	-8.615850e-47
Msa0713640	Msa0764570	0.809888	1.514484e-50	-8.615850e-47
Msa0713640	Msa0779330	0.812857	3.433150e-51	-8.615850e-47
Msa0713640	Msa0797350	0.800829	1.199437e-48	-8.615850e-47
Msa0713640	Msa0797360	0.870141	1.825976e-66	-8.615850e-47
Msa0713640	Msa0816710	0.802364	5.811468e-49	-8.615850e-47
Msa0713640	Msa0824660	0.803911	2.780793e-49	-8.615850e-47
Msa0713640	Msa0834880	0.896441	3.677918e-76	-8.615850e-47
Msa0713640	Msa0843780	-0.831390	1.715011e-55	-8.615850e-47
Msa0713640	Msa0870530	0.808574	2.896435e-50	-8.615850e-47
Msa0713640	Msa0880950	0.812612	3.884259e-51	-8.615850e-47
Msa0713640	Msa0891040	0.800642	1.309487e-48	-8.615850e-47
Msa0713640	Msa0910430	0.803563	3.283859e-49	-8.615850e-47
Msa0713640	Msa0926890	0.815148	1.072305e-51	-8.615850e-47
Msa0713640	Msa0954550	0.813334	2.697901e-51	-8.615850e-47
Msa0713640	Msa0969450	0.821439	4.036004e-53	-8.615850e-47
Msa0713640	Msa0969520	0.826361	2.829242e-54	-8.615850e-47
Msa0713640	Msa0989220	0.818077	2.365355e-52	-8.615850e-47
Msa0713640	Msa0990350	0.820272	7.487102e-53	-8.615850e-47
Msa0713640	Msa0990960	0.824337	8.523318e-54	-8.615850e-47
Msa0713640	Msa1024740	0.800333	1.514117e-48	-8.615850e-47
Msa0713640	Msa1082500	0.820984	5.137166e-53	-8.615850e-47
Msa0713640	Msa1084260	0.804148	2.482333e-49	-8.615850e-47
Msa0713640	Msa1152990	0.800551	1.367031e-48	-8.615850e-47
Msa0713640	Msa1158310	0.816492	5.377247e-52	-8.615850e-47
Msa0713640	Msa1179940	0.806273	8.913685e-50	-8.615850e-47
Msa0713640	Msa1179970	0.804899	1.730731e-49	-8.615850e-47
Msa0713640	Msa1199830	-0.805619	1.222950e-49	-8.615850e-47
Msa0713640	Msa1238930	0.813338	2.692091e-51	-8.615850e-47
Msa0713640	Msa1239720	0.808640	2.803749e-50	-8.615850e-47
Msa0713640	Msa1267610	0.805571	1.251758e-49	-8.615850e-47
Msa0713640	Msa1270610	0.815879	7.371975e-52	-8.615850e-47
Msa0713640	Msa1307210	0.807625	4.614193e-50	-8.615850e-47
Msa0713640	Msa1313150	0.801240	9.885638e-49	-8.615850e-47
Msa0713640	Msa1341520	0.816947	4.251286e-52	-8.615850e-47
Msa0713640	Msa1368430	0.800565	1.357982e-48	-8.615850e-47
Msa0713640	Msa1383230	0.805845	1.096250e-49	-8.615850e-47
Msa0713640	Msa1409700	0.810339	1.210771e-50	-8.615850e-47
Msa0713640	Msa1409870	0.800734	1.254149e-48	-8.615850e-47
Msa0713640	Msa1423880	0.812110	4.999541e-51	-8.615850e-47
Msa0713640	Msa1436480	0.811230	7.765981e-51	-8.615850e-47
Msa0713640	Msa1440740	0.801080	1.065709e-48	-8.615850e-47
Msa0713640	Msa1460020	0.820634	6.184782e-53	-8.615850e-47
Msa0123100	Msa0713640	0.809082	2.255578e-50	-8.615850e-47
Msa0169860	Msa0713640	0.809305	2.020643e-50	-8.615850e-47
Msa0210450	Msa0713640	0.800234	1.585981e-48	-8.615850e-47
Msa0215320	Msa0713640	-0.801675	8.052301e-49	-8.615850e-47
Msa0220740	Msa0713640	0.804464	2.133535e-49	-8.615850e-47
Msa0376590	Msa0713640	0.803215	3.877388e-49	-8.615850e-47
Msa0388960	Msa0713640	0.808418	3.127327e-50	-8.615850e-47
Msa0399300	Msa0713640	0.805674	1.191098e-49	-8.615850e-47
Msa0417270	Msa0713640	0.800486	1.409112e-48	-8.615850e-47
Msa0422280	Msa0713640	0.812229	4.709156e-51	-8.615850e-47
Msa0470690	Msa0713640	0.811810	5.811043e-51	-8.615850e-47
Msa0243890	Msa0713640	0.813919	2.005676e-51	-8.615850e-47
Msa0245940	Msa0713640	0.800473	1.417989e-48	-8.615850e-47
Msa0262510	Msa0713640	0.800690	1.280622e-48	-8.615850e-47
Msa0272730	Msa0713640	0.811532	6.680474e-51	-8.615850e-47
Msa0283450	Msa0713640	0.802717	4.913950e-49	-8.615850e-47
Msa0284520	Msa0713640	0.816997	4.143793e-52	-8.615850e-47
Msa0305700	Msa0713640	0.800976	1.119130e-48	-8.615850e-47
Msa0317730	Msa0713640	0.846096	2.692512e-59	-8.615850e-47
Msa0317740	Msa0713640	0.802381	5.762807e-49	-8.615850e-47
Msa0332000	Msa0713640	0.805788	1.127029e-49	-8.615850e-47
Msa0340180	Msa0713640	0.806376	8.475681e-50	-8.615850e-47
Msa0346460	Msa0713640	0.804455	2.143045e-49	-8.615850e-47
Msa0502890	Msa0713640	0.805096	1.574513e-49	-8.615850e-47
Msa0509610	Msa0713640	0.814191	1.746625e-51	-8.615850e-47
Msa0516370	Msa0713640	0.802232	6.184612e-49	-8.615850e-47
Msa0520700	Msa0713640	0.800850	1.187833e-48	-8.615850e-47
Msa0546680	Msa0713640	0.809416	1.912496e-50	-8.615850e-47
Msa0548280	Msa0713640	-0.810563	1.083420e-50	-8.615850e-47
Msa0572480	Msa0713640	0.801997	6.913193e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713640	MtrunA17_Chr5g0400641	81.410	156	29	0	1	156	1	156	1.01e-85	249
Msa0713640	MtrunA17_Chr5g0400621	72.414	174	48	0	1	174	160	333	1.86e-78	236
Msa0713640	MtrunA17_Chr2g0307131	54.023	174	80	0	1	174	182	355	4.96e-52	169
Msa0713640	MtrunA17_Chr2g0307141	52.874	174	82	0	1	174	186	359	4.44e-51	167
Msa0713640	MtrunA17_Chr6g0468491	51.149	174	85	0	1	174	140	313	1.20e-49	162
Msa0713640	MtrunA17_Chr4g0033391	51.462	171	80	2	1	171	150	317	3.84e-46	154
Msa0713640	MtrunA17_Chr2g0280161	46.746	169	89	1	1	168	180	348	5.32e-45	151
Msa0713640	MtrunA17_Chr4g0054581	50.000	182	79	3	1	174	201	378	3.26e-44	150
Msa0713640	MtrunA17_Chr7g0225901	51.316	152	74	0	1	152	91	242	1.87e-43	144
Msa0713640	MtrunA17_Chr4g0049331	45.294	170	91	2	1	169	138	306	3.21e-43	145
Msa0713640	MtrunA17_Chr4g0054621	48.000	175	82	2	1	174	175	341	4.94e-43	146
Msa0713640	MtrunA17_Chr4g0033281	50.292	171	81	1	1	171	156	322	1.59e-42	144
Msa0713640	MtrunA17_Chr4g0033291	49.425	174	85	1	1	174	158	328	9.74e-42	142
Msa0713640	MtrunA17_Chr5g0400661	45.652	184	85	4	1	170	152	334	1.15e-41	142
Msa0713640	MtrunA17_Chr4g0002801	42.938	177	95	2	1	171	155	331	9.96e-38	132
Msa0713640	MtrunA17_Chr6g0468461	49.342	152	63	2	1	152	176	313	1.08e-36	129
Msa0713640	MtrunA17_Chr4g0054551	42.373	177	91	4	1	173	158	327	8.29e-36	127
Msa0713640	MtrunA17_Chr4g0054571	47.222	180	84	4	1	171	153	330	1.36e-35	126
Msa0713640	MtrunA17_Chr8g0336681	41.111	180	97	2	1	172	159	337	3.43e-35	125
Msa0713640	MtrunA17_Chr4g0054561	41.989	181	86	5	1	173	158	327	1.32e-34	124
Msa0713640	MtrunA17_Chr4g0002781	41.808	177	96	2	1	172	177	351	8.68e-34	122
Msa0713640	MtrunA17_Chr2g0333641	44.910	167	86	3	1	165	140	302	1.95e-33	120
Msa0713640	MtrunA17_Chr2g0333621	41.899	179	87	3	1	170	141	311	7.14e-33	119
Msa0713640	MtrunA17_Chr7g0249811	39.535	172	95	1	1	172	168	330	1.47e-32	118
Msa0713640	MtrunA17_Chr5g0400671	39.766	171	98	2	1	170	157	323	1.66e-32	118
Msa0713640	MtrunA17_Chr2g0333611	37.500	176	98	4	1	171	48	216	1.73e-28	105
Msa0713640	MtrunA17_Chr2g0333541	43.195	169	92	2	1	166	97	264	5.53e-28	105
Msa0713640	MtrunA17_Chr7g0233441	41.611	149	77	3	21	169	57	195	1.49e-27	102
Msa0713640	MtrunA17_Chr4g0002851	42.953	149	67	3	21	169	65	195	4.54e-26	98.6
Msa0713640	MtrunA17_Chr4g0002831	38.272	162	88	4	9	169	53	203	6.21e-23	90.5
Msa0713640	MtrunA17_Chr8g0366751	33.333	150	87	3	2	139	466	614	1.48e-13	67.8
Msa0713640	MtrunA17_Chr5g0411341	30.201	149	93	3	2	139	497	645	3.52e-12	63.5
Msa0713640	MtrunA17_Chr1g0185621	27.338	139	93	2	1	131	478	616	6.71e-12	62.8
Msa0713640	MtrunA17_Chr7g0275821	29.091	165	106	5	2	165	256	410	2.07e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713640	AT4G37850.2	49.133	173	81	3	1	169	155	324	3.63e-46	154
Msa0713640	AT4G37850.1	49.133	173	81	3	1	169	155	324	3.63e-46	154
Msa0713640	AT2G22760.1	40.805	174	99	3	1	170	122	295	1.53e-35	125
Msa0713640	AT2G22760.2	43.421	152	83	2	1	149	122	273	4.10e-33	119
Msa0713640	AT2G22750.2	45.294	170	87	2	1	165	129	297	1.21e-32	118
Msa0713640	AT2G22750.5	45.294	170	87	2	1	165	153	321	1.96e-32	118
Msa0713640	AT2G22750.3	45.294	170	87	2	1	165	157	325	2.09e-32	118
Msa0713640	AT2G22770.1	36.957	184	101	2	1	169	135	318	2.23e-31	115
Msa0713640	AT2G22750.1	44.706	170	87	3	1	165	129	296	3.08e-30	112
Msa0713640	AT2G22750.4	44.706	170	87	3	1	165	157	324	4.92e-30	112
Msa0713640	AT4G17880.1	32.867	143	86	3	2	139	420	557	3.71e-14	69.7
Msa0713640	AT5G46760.1	32.192	146	87	4	2	139	419	560	9.14e-14	68.6
Msa0713640	AT1G32640.1	34.286	140	80	4	2	131	456	593	6.59e-13	66.2
Msa0713640	AT2G46510.1	43.662	71	36	2	2	68	399	469	3.10e-11	61.2
Msa0713640	AT1G01260.1	25.333	150	90	3	2	151	437	564	5.56e-11	60.5
Msa0713640	AT1G01260.2	25.333	150	90	3	2	151	437	564	5.56e-11	60.5
Msa0713640	AT1G01260.3	25.333	150	90	3	2	151	437	564	5.56e-11	60.5

Find 57 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGAAATGACTCAGTTATTT+TGG	0.106386	5_1:+5889136	Msa0713640:five_prime_UTR
TTGTCCTTTGGAAACAAATT+TGG	0.137791	5_1:+5889472	Msa0713640:five_prime_UTR
CATTCAAGCTTCTTGTATTT+TGG	0.138695	5_1:+5895561	Msa0713640:three_prime_UTR
CCACGTGGATGCCAAAATTT+TGG	0.169781	5_1:+5890635	Msa0713640:CDS
CTAATACTCTCAAACGTTCT+TGG	0.224167	5_1:-5890491	None:intergenic
TCTTTGTCTTGTCCTTGATT+TGG	0.243570	5_1:+5895657	Msa0713640:three_prime_UTR
AATATTAATTAGAGTTATAA+AGG	0.250112	5_1:+5889063	Msa0713640:five_prime_UTR
CTTTGTCTTGTCCTTGATTT+GGG	0.271731	5_1:+5895658	Msa0713640:three_prime_UTR
ACTCTAGCTGCTCTTATTCC+TGG	0.272370	5_1:+5889719	Msa0713640:CDS
TACAAGTCATGGAGTGATTA+TGG	0.283092	5_1:+5890576	Msa0713640:CDS
TAACCACACCACAAATAATT+AGG	0.300263	5_1:-5895527	None:intergenic
ATTTCATCTTCCTTTCTTTG+AGG	0.326001	5_1:+5895726	Msa0713640:three_prime_UTR
ATAGCAGCGTCCTAGCTATT+GGG	0.352128	5_1:+5890754	Msa0713640:CDS
AATAGCAGCGTCCTAGCTAT+TGG	0.355262	5_1:+5890753	Msa0713640:CDS
AAGTTATTCTTCTTGTCCTT+TGG	0.370526	5_1:+5889460	Msa0713640:five_prime_UTR
ATGGAGTGATTATGGTTCTA+AGG	0.381575	5_1:+5890584	Msa0713640:CDS
CATAAGCTCCTAATTATTTG+TGG	0.383716	5_1:+5895519	Msa0713640:three_prime_UTR
TATTTATTGCAGAAAGAAAC+AGG	0.398821	5_1:+5895303	Msa0713640:intron
TCAAAGAAAGGAAGATGAAA+TGG	0.405572	5_1:-5895724	None:intergenic
ATATTAATTAGAGTTATAAA+GGG	0.423278	5_1:+5889064	Msa0713640:five_prime_UTR
CAATGCGAACAAAACTTGTA+TGG	0.442147	5_1:+5889353	Msa0713640:five_prime_UTR
ATTTGAAGAAAATGAAATAG+AGG	0.453578	5_1:+5889313	Msa0713640:five_prime_UTR
CGCAGCTAAGTTACAAGTCA+TGG	0.456135	5_1:+5890565	Msa0713640:CDS
CTTTCCAAATTTGTTTCCAA+AGG	0.463702	5_1:-5889476	None:intergenic
AACAAATACATCCCAAATCA+AGG	0.480151	5_1:-5895669	None:intergenic
GTGGTGTTTGAGTATCAGAT+TGG	0.490552	5_1:+5895474	Msa0713640:three_prime_UTR
TCTTTCTCTCCGCCATGATA+CGG	0.492627	5_1:-5889667	None:intergenic
TCTTATTCCTGGCTTGAAGA+AGG	0.494711	5_1:+5889730	Msa0713640:CDS
CAAGAAGAATAACTTTCAAA+AGG	0.505322	5_1:-5889452	None:intergenic
ACGGACAAGACTTCAGTCAT+AGG	0.509641	5_1:+5890441	Msa0713640:CDS
TCAACTTCATCCTCAAAGAA+AGG	0.509995	5_1:-5895736	None:intergenic
AGTAGTATTATTTCATCGAC+CGG	0.518044	5_1:-5895407	None:intergenic
CAACTACCTCAAAATCAAGA+AGG	0.526009	5_1:+5889560	Msa0713640:five_prime_UTR
CAACATACCTTCTTCAAGCC+AGG	0.529759	5_1:-5889737	None:intergenic
TGACATAACAATCATTGCTC+GGG	0.533848	5_1:+5890788	Msa0713640:CDS
TTGACATAACAATCATTGCT+CGG	0.539889	5_1:+5890787	Msa0713640:CDS
GGTAGTTGTGTTTGTGACAA+TGG	0.540621	5_1:-5889545	None:intergenic
TGGTGTTTGAGTATCAGATT+GGG	0.541526	5_1:+5895475	Msa0713640:three_prime_UTR
ATAATACTACTAAGATGTCA+TGG	0.553899	5_1:+5895419	Msa0713640:three_prime_UTR
GCTCCTAATTATTTGTGGTG+TGG	0.558703	5_1:+5895524	Msa0713640:three_prime_UTR
GGATAGAATCCCCAATAGCT+AGG	0.566848	5_1:-5890764	None:intergenic
TGATCATCAAGACCGTATCA+TGG	0.571054	5_1:+5889655	Msa0713640:exon
TTTGAAGAAAATGAAATAGA+GGG	0.571396	5_1:+5889314	Msa0713640:five_prime_UTR
TAACTTTCAAAAGGTAACAA+TGG	0.572810	5_1:-5889443	None:intergenic
CAGAAAGACAAGGGACTAAG+AGG	0.576978	5_1:+5889621	Msa0713640:five_prime_UTR
GAGCAATGATTGTTATGTCA+AGG	0.583989	5_1:-5890785	None:intergenic
CGTAACATGAACATGTAGTC+CGG	0.586244	5_1:+5895388	Msa0713640:exon
TAGCAGCGTCCTAGCTATTG+GGG	0.595786	5_1:+5890755	Msa0713640:CDS
TATTAATTAGAGTTATAAAG+GGG	0.597322	5_1:+5889065	Msa0713640:five_prime_UTR
AACTACCTCAAAATCAAGAA+GGG	0.608663	5_1:+5889561	Msa0713640:five_prime_UTR
TGCTATTAACAACAGAGAGA+TGG	0.624062	5_1:-5890737	None:intergenic
TGGAACAACTTCATGCAAAG+TGG	0.630460	5_1:-5889525	None:intergenic
TACATGTTCATGTTACGACA+TGG	0.637585	5_1:-5895382	None:intergenic
CACTGCTATCTATGCCAATG+AGG	0.645769	5_1:-5895454	None:intergenic
CTCATTGGCATAGATAGCAG+TGG	0.655973	5_1:+5895455	Msa0713640:three_prime_UTR
TAATGAAGATCTCCTCCACG+TGG	0.724761	5_1:+5890620	Msa0713640:CDS
TCATCAAGACCGTATCATGG+CGG	0.756942	5_1:+5889658	Msa0713640:exon

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TATATATATATATATATATA+TGG	+	chr5_1:5890830-5890849	Msa0713640:intron	0.0%
!!!	TAATTATTTTTATTTTTTAT+TGG	+	chr5_1:5892858-5892877	Msa0713640:intron	0.0%
!!!	AATTATTTTTATTTTTTATT+GGG	+	chr5_1:5892859-5892878	Msa0713640:intron	0.0%
!!!	TTATTTTTTATTTTTTTATA+GGG	-	chr5_1:5894048-5894067	None:intergenic	0.0%
!!!	TTTATTTTTTATTTTTTTAT+AGG	-	chr5_1:5894049-5894068	None:intergenic	0.0%
!!	TATATATATATATATATATA+TGG	-	chr5_1:5890830-5890849	None:intergenic	0.0%
!!	AATATTAATTAGAGTTATAA+AGG	+	chr5_1:5889063-5889082	Msa0713640:five_prime_UTR	10.0%
!!	ATATTAATTAGAGTTATAAA+GGG	+	chr5_1:5889064-5889083	Msa0713640:five_prime_UTR	10.0%
!!!	TTATTAATTTTTGCATTTTT+GGG	+	chr5_1:5890040-5890059	Msa0713640:intron	10.0%
!!!	AGAAATAATTTTAATATGTT+TGG	+	chr5_1:5890086-5890105	Msa0713640:intron	10.0%
!!	TTATTTAATAACACATATAT+TGG	-	chr5_1:5891254-5891273	None:intergenic	10.0%
!!	TAAAGTCTATTTAATTAAAT+AGG	-	chr5_1:5891410-5891429	None:intergenic	10.0%
!!!	TATTTTTTTTTTTATAAGCA+AGG	+	chr5_1:5892030-5892049	Msa0713640:intron	10.0%
!!	TATATATATATATGGTTAAT+AGG	+	chr5_1:5892655-5892674	Msa0713640:intron	10.0%
!!	TCTAAAAAAAAAAAATTACA+GGG	-	chr5_1:5892720-5892739	None:intergenic	10.0%
!!	ATCTAAAAAAAAAAAATTAC+AGG	-	chr5_1:5892721-5892740	None:intergenic	10.0%
!!	TAAAAAATTGAAAAAAATTC+TGG	+	chr5_1:5892948-5892967	Msa0713640:intron	10.0%
!!	TGAAAAAAATAAAAAAATTC+TGG	+	chr5_1:5893107-5893126	Msa0713640:intron	10.0%
!!	AAAATAAAATTTCGAAATTA+TGG	+	chr5_1:5893132-5893151	Msa0713640:intron	10.0%
!!!	TTTTTTTTTAGTATTTTTTC+CGG	+	chr5_1:5893462-5893481	Msa0713640:intron	10.0%
!!	TGAAAAAAATTGAAAAAAAA+CGG	-	chr5_1:5893852-5893871	None:intergenic	10.0%
!!!	ATCTAAATTTTTTTTTTTAC+AGG	+	chr5_1:5894194-5894213	Msa0713640:intron	10.0%
!!!	TCTAAATTTTTTTTTTTACA+GGG	+	chr5_1:5894195-5894214	Msa0713640:intron	10.0%
!!	TATATATATATATGGTTAAT+AGG	-	chr5_1:5892655-5892674	None:intergenic	10.0%
!!	AAAAAAAACATCATAAAAAA+GGG	-	chr5_1:5894520-5894539	None:intergenic	10.0%
!!!	TTTTTTCTCAAATAATTAAA+GGG	-	chr5_1:5895264-5895283	None:intergenic	10.0%
!!	TATTAATTAGAGTTATAAAG+GGG	+	chr5_1:5889065-5889084	Msa0713640:five_prime_UTR	15.0%
!!!	TTGTATGAATGATTTTTATA+CGG	+	chr5_1:5889260-5889279	Msa0713640:intron	15.0%
!!!	GTTATTAATTTTTGCATTTT+TGG	+	chr5_1:5890039-5890058	Msa0713640:intron	15.0%
!!!	TGTAAAATAGGTTTTTAAAT+AGG	-	chr5_1:5891114-5891133	None:intergenic	15.0%
!!	AAGATTGCATTAATAAAATT+TGG	-	chr5_1:5891177-5891196	None:intergenic	15.0%
!!	TTATATATAAAACGTTGAAT+AGG	+	chr5_1:5891339-5891358	Msa0713640:intron	15.0%
!!	TAAAAAAAAAAAATTACAGG+GGG	-	chr5_1:5892718-5892737	None:intergenic	15.0%
!!	CTAAAAAAAAAAAATTACAG+GGG	-	chr5_1:5892719-5892738	None:intergenic	15.0%
!!!	TCCAGAATTTTAAAAAATTT+CGG	-	chr5_1:5893015-5893034	None:intergenic	15.0%
!!	TTTAAATTTGAATGAAATTC+TGG	+	chr5_1:5893175-5893194	Msa0713640:intron	15.0%
!!!	AATGAATTTCTGAAAAATTA+TGG	+	chr5_1:5893263-5893282	Msa0713640:intron	15.0%
!!!	TTTTTTTTAGTATTTTTTCC+GGG	+	chr5_1:5893463-5893482	Msa0713640:intron	15.0%
!!!	ATTTTTGTGTATTTATAAAC+CGG	+	chr5_1:5893368-5893387	Msa0713640:intron	15.0%
!!	AAAAATTCAGAAAAAAAATC+TGG	-	chr5_1:5893696-5893715	None:intergenic	15.0%
!!	CTGAAAAAATTTAAAAATTC+TGG	-	chr5_1:5893784-5893803	None:intergenic	15.0%
!!!	CTAAATTTTTTTTTTTACAG+GGG	+	chr5_1:5894196-5894215	Msa0713640:intron	15.0%
!!	AAAGGAATTAAGAAAATTAA+TGG	-	chr5_1:5894354-5894373	None:intergenic	15.0%
!!	AAAAAAACATCATAAAAAAG+GGG	-	chr5_1:5894519-5894538	None:intergenic	15.0%
!!	GAAAAAAAACATCATAAAAA+AGG	-	chr5_1:5894521-5894540	None:intergenic	15.0%
!!	TAAAATAGATGTAATTGTAT+TGG	-	chr5_1:5894566-5894585	None:intergenic	15.0%
!!!	ATTACATCTATTTTATATGT+TGG	+	chr5_1:5894571-5894590	Msa0713640:intron	15.0%
!!	TTTCAAACCAATATAAAAAT+TGG	-	chr5_1:5895217-5895236	None:intergenic	15.0%
!!!	GTTTTTTCTCAAATAATTAA+AGG	-	chr5_1:5895265-5895284	None:intergenic	15.0%
!!!	ATTTTGGAAACACTTTTTTT+TGG	+	chr5_1:5889152-5889171	Msa0713640:five_prime_UTR	20.0%
!!!	TTTTTTTTGGTTATCTGATT+GGG	+	chr5_1:5889165-5889184	Msa0713640:five_prime_UTR	20.0%
!!	ATTTGAAGAAAATGAAATAG+AGG	+	chr5_1:5889313-5889332	Msa0713640:five_prime_UTR	20.0%
!!	TTTGAAGAAAATGAAATAGA+GGG	+	chr5_1:5889314-5889333	Msa0713640:five_prime_UTR	20.0%
!!	TAAAAAACAATCTAGAAGTT+AGG	+	chr5_1:5889876-5889895	Msa0713640:intron	20.0%
!!!	TTATTTAAGATAGATCGATT+TGG	+	chr5_1:5889944-5889963	Msa0713640:intron	20.0%
!!!	ACTAGTTAGCTATTAATTTT+AGG	+	chr5_1:5890368-5890387	Msa0713640:intron	20.0%
!!!	GAGTTTTTTGCTTAATAAAT+TGG	+	chr5_1:5890698-5890717	Msa0713640:CDS	20.0%
!!!	TATAATTTTTGAAGTATGTC+AGG	-	chr5_1:5891007-5891026	None:intergenic	20.0%
!!	TGACATACTTCAAAAATTAT+AGG	+	chr5_1:5891006-5891025	Msa0713640:intron	20.0%
!!!	TAAAAACCTATTTTACACTA+AGG	+	chr5_1:5891117-5891136	Msa0713640:intron	20.0%
!!	ATATTTAGTAGTAGGTTTAT+AGG	-	chr5_1:5891153-5891172	None:intergenic	20.0%
!!!	ACATGTAATTAGTTTTGTAT+AGG	+	chr5_1:5891541-5891560	Msa0713640:intron	20.0%
!!	ATTGTCCTTAATAAATGTTA+TGG	+	chr5_1:5891597-5891616	Msa0713640:intron	20.0%
!!	CTTTACCATAACATTTATTA+AGG	-	chr5_1:5891605-5891624	None:intergenic	20.0%
!!	AAATTATCCTAATCAACTAT+TGG	+	chr5_1:5891759-5891778	Msa0713640:intron	20.0%
!!!	TGTATATAGTATTGATTGAA+GGG	+	chr5_1:5891822-5891841	Msa0713640:intron	20.0%
!!	TAATGTTTCATTTGTATTGT+AGG	+	chr5_1:5891950-5891969	Msa0713640:intron	20.0%
!!!	CAACACATAATATAATTTTG+TGG	-	chr5_1:5892132-5892151	None:intergenic	20.0%
!!	ATTGTCCTTAATAAATGTTA+TGG	+	chr5_1:5891597-5891616	Msa0713640:intron	20.0%
!!	CTTTACCATAACATTTATTA+AGG	-	chr5_1:5891605-5891624	None:intergenic	20.0%
!!	GAGAGAATAATAAATAGTTA+AGG	+	chr5_1:5892211-5892230	Msa0713640:intron	20.0%
!!!	TCTATACAACTTAGAAATTT+TGG	-	chr5_1:5892392-5892411	None:intergenic	20.0%
!!!	GAATCTTCATTTTAAAATGA+CGG	-	chr5_1:5892745-5892764	None:intergenic	20.0%
!!!	ACCGAAATTTTTTAAAATTC+TGG	+	chr5_1:5893011-5893030	Msa0713640:intron	20.0%
!!	ATTCTCGAAAATAAAAATTC+TGG	+	chr5_1:5893200-5893219	Msa0713640:intron	20.0%
!!	AGTATTTCTCAAAAAATTTC+CGG	+	chr5_1:5893343-5893362	Msa0713640:intron	20.0%
!!	TATAAATACACAAAAATTCC+CGG	-	chr5_1:5893365-5893384	None:intergenic	20.0%
!!	TATTTATAAACCGAGAATAA+GGG	+	chr5_1:5893377-5893396	Msa0713640:intron	20.0%
!!	TATAAATACACAAAAATTCC+CGG	-	chr5_1:5893365-5893384	None:intergenic	20.0%
!!!	TTTTTGTGTATTTATAAACC+GGG	+	chr5_1:5893369-5893388	Msa0713640:intron	20.0%
!!	TATTTATAAACCGAGAATAA+GGG	+	chr5_1:5893377-5893396	Msa0713640:intron	20.0%
!!!	TTTTCTCAATATATCTAGAA+TGG	+	chr5_1:5894325-5894344	Msa0713640:intron	20.0%
!!!	TTTCTCAATATATCTAGAAT+GGG	+	chr5_1:5894326-5894345	Msa0713640:intron	20.0%
!!!	AGTTTTACAAAACAAACAAT+GGG	-	chr5_1:5894464-5894483	None:intergenic	20.0%
!!!	AAGTTTTACAAAACAAACAA+TGG	-	chr5_1:5894465-5894484	None:intergenic	20.0%
!!!	ATTGTTTGTTTTGTAAAACT+TGG	+	chr5_1:5894464-5894483	Msa0713640:intron	20.0%
!!!	GCATTACTAAATTTTAATTG+TGG	-	chr5_1:5894772-5894791	None:intergenic	20.0%
!!!	AACTTTGAAAATTTACAGAA+AGG	-	chr5_1:5894860-5894879	None:intergenic	20.0%
!!!	CCTTTTTCTTTTCTAATTAA+CGG	-	chr5_1:5895086-5895105	None:intergenic	20.0%
!!!	TTCAGTACCAATTTTTATAT+TGG	+	chr5_1:5895207-5895226	Msa0713640:intron	20.0%
!!!	TTGGTTTGAAAAATGAATTA+AGG	+	chr5_1:5895226-5895245	Msa0713640:intron	20.0%
!!	TTATTTGAGAAAAAACTTAC+AGG	+	chr5_1:5895269-5895288	Msa0713640:intron	20.0%
!!!	GATGTATTTGTTATAGTTTT+TGG	+	chr5_1:5895680-5895699	Msa0713640:three_prime_UTR	20.0%
!!	TTGAAATGACTCAGTTATTT+TGG	+	chr5_1:5889136-5889155	Msa0713640:five_prime_UTR	25.0%
!!!	CTTTTTTTTGGTTATCTGAT+TGG	+	chr5_1:5889164-5889183	Msa0713640:five_prime_UTR	25.0%
!	TAACTTTCAAAAGGTAACAA+TGG	-	chr5_1:5889446-5889465	None:intergenic	25.0%
!	CAAGAAGAATAACTTTCAAA+AGG	-	chr5_1:5889455-5889474	None:intergenic	25.0%
!	ACTAAAAATACAGAAAGACA+AGG	+	chr5_1:5889611-5889630	Msa0713640:five_prime_UTR	25.0%
!	CTAAAAATACAGAAAGACAA+GGG	+	chr5_1:5889612-5889631	Msa0713640:five_prime_UTR	25.0%
!	GATATATGTCGAAACATAAA+AGG	-	chr5_1:5889906-5889925	None:intergenic	25.0%
!!	TTATTCTAACCTTTTAGACA+TGG	+	chr5_1:5889974-5889993	Msa0713640:intron	25.0%
!!	TATTCTAACCTTTTAGACAT+GGG	+	chr5_1:5889975-5889994	Msa0713640:intron	25.0%
!	CTATATGCATATTGTGATAA+TGG	-	chr5_1:5890020-5890039	None:intergenic	25.0%
!	AAGATGCAATAGTTAATATG+TGG	-	chr5_1:5890220-5890239	None:intergenic	25.0%
!	CTCCATCTATTTCAAATATT+TGG	+	chr5_1:5890307-5890326	Msa0713640:intron	25.0%
!	TTGTAAATCAAATCAACAGA+CGG	+	chr5_1:5890422-5890441	Msa0713640:intron	25.0%
!	AGGAAATTAGGGAAAAAAAT+GGG	+	chr5_1:5890950-5890969	Msa0713640:intron	25.0%
!	AATTTGGCATATTTAGTAGT+AGG	-	chr5_1:5891161-5891180	None:intergenic	25.0%
!	ACTTGATTCTTCATATGATT+TGG	-	chr5_1:5891277-5891296	None:intergenic	25.0%
!!!	AAACGACATTCATTTTGAAA+CGG	-	chr5_1:5891672-5891691	None:intergenic	25.0%
!!	TTCAAAATGAATGTCGTTTA+AGG	+	chr5_1:5891673-5891692	Msa0713640:intron	25.0%
!	AAACAAACCAATAGTTGATT+AGG	-	chr5_1:5891769-5891788	None:intergenic	25.0%
!!!	GTGTATATAGTATTGATTGA+AGG	+	chr5_1:5891821-5891840	Msa0713640:intron	25.0%
!!!	TGACATTTATTTTGAAACAG+AGG	+	chr5_1:5891889-5891908	Msa0713640:intron	25.0%
!!!	GACATTTATTTTGAAACAGA+GGG	+	chr5_1:5891890-5891909	Msa0713640:intron	25.0%
!!!	TTTTTTATAAGCAAGGAATG+TGG	+	chr5_1:5892037-5892056	Msa0713640:intron	25.0%
!!	CACATAATATAATTTTGTGG+TGG	-	chr5_1:5892129-5892148	None:intergenic	25.0%
!	AAGTTGTATAGAAATACCTT+AGG	+	chr5_1:5892400-5892419	Msa0713640:intron	25.0%
!!	TTGAGAGTTAAAACCTTTTA+AGG	+	chr5_1:5892430-5892449	Msa0713640:intron	25.0%
!!	TGAGAGTTAAAACCTTTTAA+GGG	+	chr5_1:5892431-5892450	Msa0713640:intron	25.0%
!	GTATTTCTCAAAAAATTTCC+GGG	+	chr5_1:5893344-5893363	Msa0713640:intron	25.0%
!	GTATTTATAAACCGAGAATA+AGG	+	chr5_1:5893376-5893395	Msa0713640:intron	25.0%
!!!	CATATTTTTTCCCTTATTCT+CGG	-	chr5_1:5893390-5893409	None:intergenic	25.0%
!	TGTATTTATAAACTGAGCTT+AGG	+	chr5_1:5893410-5893429	Msa0713640:intron	25.0%
!	TATAAATACACAAAAGTTCC+CGG	-	chr5_1:5893509-5893528	None:intergenic	25.0%
!	GTATTTATAAACCGAGAATA+AGG	+	chr5_1:5893376-5893395	Msa0713640:intron	25.0%
!	CGGACAAAATTTAAAAAATC+TGG	-	chr5_1:5893832-5893851	None:intergenic	25.0%
!!	TGAAGAATCTTCATTTTACA+AGG	+	chr5_1:5894166-5894185	Msa0713640:intron	25.0%
!!	ATTTTCTTAATTCCTTTCTC+TGG	+	chr5_1:5894357-5894376	Msa0713640:intron	25.0%
!!	TTTTCTTAATTCCTTTCTCT+GGG	+	chr5_1:5894358-5894377	Msa0713640:intron	25.0%
!!	GTTTTACAAAACAAACAATG+GGG	-	chr5_1:5894463-5894482	None:intergenic	25.0%
!!	CTATTTTATATGTTGGAAGA+TGG	+	chr5_1:5894578-5894597	Msa0713640:intron	25.0%
!!!	ATTAAGTTTTTCAACTGTCT+TGG	-	chr5_1:5894830-5894849	None:intergenic	25.0%
!!!	TCTTTTTTTAAGTTCGAGTT+CGG	-	chr5_1:5894952-5894971	None:intergenic	25.0%
!	TTTCTAATTAACGGTACTTA+TGG	-	chr5_1:5895077-5895096	None:intergenic	25.0%
!	CCGTTAATTAGAAAAGAAAA+AGG	+	chr5_1:5895083-5895102	Msa0713640:intron	25.0%
!	TCTGCAATAAATAAATAGTG+TGG	-	chr5_1:5895296-5895315	None:intergenic	25.0%
!	TATTTATTGCAGAAAGAAAC+AGG	+	chr5_1:5895303-5895322	Msa0713640:intron	25.0%
!!	GCTTTTTACAAGATCATTTT+CGG	-	chr5_1:5895340-5895359	None:intergenic	25.0%
!	ATAATACTACTAAGATGTCA+TGG	+	chr5_1:5895419-5895438	Msa0713640:three_prime_UTR	25.0%
!!	AGCAAGTATTTTTCAACAAG+AGG	+	chr5_1:5889403-5889422	Msa0713640:five_prime_UTR	30.0%
	AAGTTATTCTTCTTGTCCTT+TGG	+	chr5_1:5889460-5889479	Msa0713640:five_prime_UTR	30.0%
!	TTGTCCTTTGGAAACAAATT+TGG	+	chr5_1:5889472-5889491	Msa0713640:five_prime_UTR	30.0%
!	CTTTCCAAATTTGTTTCCAA+AGG	-	chr5_1:5889479-5889498	None:intergenic	30.0%
	AACTACCTCAAAATCAAGAA+GGG	+	chr5_1:5889561-5889580	Msa0713640:five_prime_UTR	30.0%
!!!	TTAGAGCTACGTGTTTTTTT+GGG	-	chr5_1:5889859-5889878	None:intergenic	30.0%
!!!	TTTAGAGCTACGTGTTTTTT+TGG	-	chr5_1:5889860-5889879	None:intergenic	30.0%
!!	TATTGTGATAATGGTCCAAA+CGG	-	chr5_1:5890011-5890030	None:intergenic	30.0%
!!!	TTTTGGGACCAAACTTTATT+CGG	+	chr5_1:5890056-5890075	Msa0713640:intron	30.0%
	TACACATACCGAATAAAGTT+TGG	-	chr5_1:5890067-5890086	None:intergenic	30.0%
	TGTAGTGATGAGAATTCATT+TGG	-	chr5_1:5890273-5890292	None:intergenic	30.0%
!	CGCCAAATATTTGAAATAGA+TGG	-	chr5_1:5890312-5890331	None:intergenic	30.0%
!	CACGTTTTTGTCCAAAATTT+TGG	-	chr5_1:5890649-5890668	None:intergenic	30.0%
!	GCAAAAAACTCTTTTGCTTT+TGG	-	chr5_1:5890689-5890708	None:intergenic	30.0%
	TTGACATAACAATCATTGCT+CGG	+	chr5_1:5890787-5890806	Msa0713640:CDS	30.0%
	TGTTCGTTGTAGTAAATTGT+TGG	+	chr5_1:5890919-5890938	Msa0713640:intron	30.0%
	GAGGAAATTAGGGAAAAAAA+TGG	+	chr5_1:5890949-5890968	Msa0713640:intron	30.0%
!!!	TTTTGAAGTATGTCAGGTTT+AGG	-	chr5_1:5891001-5891020	None:intergenic	30.0%
!	ACTTCATCATGCCTTTAAAA+AGG	-	chr5_1:5891084-5891103	None:intergenic	30.0%
!!	AGTTAGGCTTTAAATAGGTT+AGG	+	chr5_1:5891472-5891491	Msa0713640:intron	30.0%
!	ATTACATTTCCTCTAGAGAT+GGG	-	chr5_1:5892000-5892019	None:intergenic	30.0%
!	AATTACATTTCCTCTAGAGA+TGG	-	chr5_1:5892001-5892020	None:intergenic	30.0%
!	ATATAATTTTGTGGTGGCAT+AGG	-	chr5_1:5892123-5892142	None:intergenic	30.0%
	AAACGACATACAATTTGAGA+CGG	+	chr5_1:5892315-5892334	Msa0713640:intron	30.0%
!!	GTCTTAAAGGTTAGTCTATT+GGG	+	chr5_1:5892364-5892383	Msa0713640:intron	30.0%
!!	TCTTAAAGGTTAGTCTATTG+GGG	+	chr5_1:5892365-5892384	Msa0713640:intron	30.0%
!	ATAGAAATACCTTAGGTTGT+CGG	+	chr5_1:5892407-5892426	Msa0713640:intron	30.0%
!!	AAACTATATTCGAGTTGGTT+CGG	-	chr5_1:5892468-5892487	None:intergenic	30.0%
	AAAAGTCGTCTATATTACAG+GGG	-	chr5_1:5892688-5892707	None:intergenic	30.0%
	CAAAAGTCGTCTATATTACA+GGG	-	chr5_1:5892689-5892708	None:intergenic	30.0%
!!!	TGCATTTTTTCCCTTATTCT+CGG	-	chr5_1:5893534-5893553	None:intergenic	30.0%
	TTAGTATATATGTCGAGCTT+AGG	-	chr5_1:5893566-5893585	None:intergenic	30.0%
!	GAATCTTCATTTTACAAGGA+CGG	+	chr5_1:5894170-5894189	Msa0713640:intron	30.0%
	TACTACCAAATTGAATCAGA+AGG	+	chr5_1:5894602-5894621	Msa0713640:intron	30.0%
	TTCTTCCTTCTGATTCAATT+TGG	-	chr5_1:5894610-5894629	None:intergenic	30.0%
!!	TTTTTCAACTGTCTTGGAAA+TGG	-	chr5_1:5894824-5894843	None:intergenic	30.0%
	AATCTCGATAAGAATTAGCT+CGG	-	chr5_1:5895004-5895023	None:intergenic	30.0%
	AGTAGTATTATTTCATCGAC+CGG	-	chr5_1:5895410-5895429	None:intergenic	30.0%
	CATAAGCTCCTAATTATTTG+TGG	+	chr5_1:5895519-5895538	Msa0713640:three_prime_UTR	30.0%
	TAACCACACCACAAATAATT+AGG	-	chr5_1:5895530-5895549	None:intergenic	30.0%
!	CATTCAAGCTTCTTGTATTT+TGG	+	chr5_1:5895561-5895580	Msa0713640:three_prime_UTR	30.0%
	AACAAATACATCCCAAATCA+AGG	-	chr5_1:5895672-5895691	None:intergenic	30.0%
	TCAAAGAAAGGAAGATGAAA+TGG	-	chr5_1:5895727-5895746	None:intergenic	30.0%
	GAGTTATAAAGGGGAAAAAG+TGG	+	chr5_1:5889074-5889093	Msa0713640:five_prime_UTR	35.0%
	GTCACTTGACTGATATATGA+AGG	-	chr5_1:5889203-5889222	None:intergenic	35.0%
	CAATGCGAACAAAACTTGTA+TGG	+	chr5_1:5889353-5889372	Msa0713640:five_prime_UTR	35.0%
	CAACTACCTCAAAATCAAGA+AGG	+	chr5_1:5889560-5889579	Msa0713640:five_prime_UTR	35.0%
!	AATGACCCTTCTTGATTTTG+AGG	-	chr5_1:5889569-5889588	None:intergenic	35.0%
	TCTCATTCATGGATTCTTCA+AGG	+	chr5_1:5889776-5889795	Msa0713640:intron	35.0%
	CTAATACTCTCAAACGTTCT+TGG	-	chr5_1:5890494-5890513	None:intergenic	35.0%
	TACAAGTCATGGAGTGATTA+TGG	+	chr5_1:5890576-5890595	Msa0713640:CDS	35.0%
!	ATGGAGTGATTATGGTTCTA+AGG	+	chr5_1:5890584-5890603	Msa0713640:CDS	35.0%
	TGCTATTAACAACAGAGAGA+TGG	-	chr5_1:5890740-5890759	None:intergenic	35.0%
	GAGCAATGATTGTTATGTCA+AGG	-	chr5_1:5890788-5890807	None:intergenic	35.0%
	TGACATAACAATCATTGCTC+GGG	+	chr5_1:5890788-5890807	Msa0713640:CDS	35.0%
	GTTGTAGTAAATTGTTGGAG+TGG	+	chr5_1:5890924-5890943	Msa0713640:intron	35.0%
	TTTGACCTATTACCCATCAT+AGG	+	chr5_1:5891035-5891054	Msa0713640:intron	35.0%
	CTTAAATGTGAGCCTATGAT+GGG	-	chr5_1:5891050-5891069	None:intergenic	35.0%
	AAAAGCCTATTAAGCACATC+AGG	-	chr5_1:5891369-5891388	None:intergenic	35.0%
	ACTAATTACATGTCCTCTAG+AGG	-	chr5_1:5891534-5891553	None:intergenic	35.0%
	ACAGAGGGAGTAAATACTTA+AGG	+	chr5_1:5891905-5891924	Msa0713640:intron	35.0%
	AGGAAAACAGATGTATGCTA+AGG	+	chr5_1:5892342-5892361	Msa0713640:intron	35.0%
	GATGTATGCTAAGGTCTTAA+AGG	+	chr5_1:5892351-5892370	Msa0713640:intron	35.0%
!!	GGTCTTAAAGGTTAGTCTAT+TGG	+	chr5_1:5892363-5892382	Msa0713640:intron	35.0%
!!	CTTAAAGGTTAGTCTATTGG+GGG	+	chr5_1:5892366-5892385	Msa0713640:intron	35.0%
	GTTCATTGTCATCCCTTAAA+AGG	-	chr5_1:5892446-5892465	None:intergenic	35.0%
	GAACCAACTCGAATATAGTT+TGG	+	chr5_1:5892467-5892486	Msa0713640:intron	35.0%
	GTTCCAAACTATATTCGAGT+TGG	-	chr5_1:5892473-5892492	None:intergenic	35.0%
	GACAATTAACTCGTTGAGTT+TGG	+	chr5_1:5892500-5892519	Msa0713640:intron	35.0%
	AACTTGAGCTATGCATAGTT+CGG	+	chr5_1:5892543-5892562	Msa0713640:intron	35.0%
	AAAGTCGTCTATATTACAGG+GGG	-	chr5_1:5892687-5892706	None:intergenic	35.0%
	CCAAAAGTCGTCTATATTAC+AGG	-	chr5_1:5892690-5892709	None:intergenic	35.0%
!	CCTGTAATATAGACGACTTT+TGG	+	chr5_1:5892687-5892706	Msa0713640:intron	35.0%
!!!	TTTTTTTATAGGGGTACACG+TGG	-	chr5_1:5894038-5894057	None:intergenic	35.0%
	CAAAAGTCGCCTATATTACA+GGG	+	chr5_1:5894226-5894245	Msa0713640:intron	35.0%
	AAAAGTCGCCTATATTACAG+GGG	+	chr5_1:5894227-5894246	Msa0713640:intron	35.0%
	ACAATGAAAATCCCAGAGAA+AGG	-	chr5_1:5894372-5894391	None:intergenic	35.0%
!!	TCTGGGATTTTCATTGTGTT+TGG	+	chr5_1:5894375-5894394	Msa0713640:intron	35.0%
	TTACAAAACAAACAATGGGG+TGG	-	chr5_1:5894460-5894479	None:intergenic	35.0%
	ATCAGAAGGAAGAAAACTGA+TGG	+	chr5_1:5894616-5894635	Msa0713640:intron	35.0%
	GTTAACTAAATAGCCGATGT+GGG	-	chr5_1:5894710-5894729	None:intergenic	35.0%
	TGTTAACTAAATAGCCGATG+TGG	-	chr5_1:5894711-5894730	None:intergenic	35.0%
	TAATTAACGGTACTTATGGC+TGG	-	chr5_1:5895073-5895092	None:intergenic	35.0%
	TACATGTTCATGTTACGACA+TGG	-	chr5_1:5895385-5895404	None:intergenic	35.0%
!!	GGAGTATTTTCTTACCTCAT+TGG	+	chr5_1:5895440-5895459	Msa0713640:three_prime_UTR	35.0%
	TGGTGTTTGAGTATCAGATT+GGG	+	chr5_1:5895475-5895494	Msa0713640:three_prime_UTR	35.0%
!!!	CAAGCTTCTTGTATTTTGGT+TGG	+	chr5_1:5895565-5895584	Msa0713640:three_prime_UTR	35.0%
!!!	GTATTTTGGTTGGTACTAGT+AGG	+	chr5_1:5895575-5895594	Msa0713640:three_prime_UTR	35.0%
!!!	ACAGCTACTTTTGTGGTTTT+TGG	+	chr5_1:5895624-5895643	Msa0713640:intron	35.0%
	TCTTTGTCTTGTCCTTGATT+TGG	+	chr5_1:5895657-5895676	Msa0713640:three_prime_UTR	35.0%
	CTTTGTCTTGTCCTTGATTT+GGG	+	chr5_1:5895658-5895677	Msa0713640:three_prime_UTR	35.0%
	TGGAACAACTTCATGCAAAG+TGG	-	chr5_1:5889528-5889547	None:intergenic	40.0%
	GGTAGTTGTGTTTGTGACAA+TGG	-	chr5_1:5889548-5889567	None:intergenic	40.0%
	TGATCATCAAGACCGTATCA+TGG	+	chr5_1:5889655-5889674	Msa0713640:exon	40.0%
!	TCTTATTCCTGGCTTGAAGA+AGG	+	chr5_1:5889730-5889749	Msa0713640:CDS	40.0%
!	TGAAGAAGGTATGTTGCTCT+CGG	+	chr5_1:5889744-5889763	Msa0713640:intron	40.0%
	GGATCTCATTGTCTCATTCA+TGG	+	chr5_1:5889765-5889784	Msa0713640:intron	40.0%
	GTTTCGATCCCATGTCTAAA+AGG	-	chr5_1:5889986-5890005	None:intergenic	40.0%
	TGGACAAAAACGTGCTCATA+AGG	+	chr5_1:5890655-5890674	Msa0713640:CDS	40.0%
!!	AACTCTTTTGCTTTTGGCAC+TGG	-	chr5_1:5890683-5890702	None:intergenic	40.0%
	GTAAATTGTTGGAGTGGAAG+AGG	+	chr5_1:5890930-5890949	Msa0713640:intron	40.0%
	TTGGAGTGGAAGAGGAAATT+AGG	+	chr5_1:5890938-5890957	Msa0713640:intron	40.0%
	TGGAGTGGAAGAGGAAATTA+GGG	+	chr5_1:5890939-5890958	Msa0713640:intron	40.0%
	CCTTAAATGTGAGCCTATGA+TGG	-	chr5_1:5891051-5891070	None:intergenic	40.0%
	CCATCATAGGCTCACATTTA+AGG	+	chr5_1:5891048-5891067	Msa0713640:intron	40.0%
!	ATAGGCTCACATTTAAGGTG+TGG	+	chr5_1:5891053-5891072	Msa0713640:intron	40.0%
!	GTGTGGTCTGACCTTTTTAA+AGG	+	chr5_1:5891070-5891089	Msa0713640:intron	40.0%
	GCTAGGCCTTAGTGTAAAAT+AGG	-	chr5_1:5891126-5891145	None:intergenic	40.0%
!!	GTAGGTTTATAGGTGTTGCT+AGG	-	chr5_1:5891143-5891162	None:intergenic	40.0%
!	CCTTGTTTGATAAGAAGGCT+AGG	-	chr5_1:5891446-5891465	None:intergenic	40.0%
!	CCTAGCCTTCTTATCAAACA+AGG	+	chr5_1:5891443-5891462	Msa0713640:intron	40.0%
	AGCCTTCTTATCAAACAAGG+CGG	+	chr5_1:5891446-5891465	Msa0713640:intron	40.0%
!!	GGTCGAGTTAGGCTTTAAAT+AGG	+	chr5_1:5891467-5891486	Msa0713640:intron	40.0%
!	ATTACATGTCCTCTAGAGGT+GGG	-	chr5_1:5891530-5891549	None:intergenic	40.0%
!	AATTACATGTCCTCTAGAGG+TGG	-	chr5_1:5891531-5891550	None:intergenic	40.0%
	GAATGTGGACAAACATCAAG+CGG	+	chr5_1:5892052-5892071	Msa0713640:intron	40.0%
!	AATTTTGTGGTGGCATAGGA+TGG	-	chr5_1:5892119-5892138	None:intergenic	40.0%
!	GACATACAATTTGAGACGGA+GGG	+	chr5_1:5892319-5892338	Msa0713640:intron	40.0%
	TAGCTCAAGTTCAGCTCATT+TGG	-	chr5_1:5892534-5892553	None:intergenic	40.0%
!	CCTGTAATATAGGCGACTTT+TGG	-	chr5_1:5894228-5894247	None:intergenic	40.0%
	CCAAAAGTCGCCTATATTAC+AGG	+	chr5_1:5894225-5894244	Msa0713640:intron	40.0%
	AAAGTCGCCTATATTACAGG+GGG	+	chr5_1:5894228-5894247	Msa0713640:intron	40.0%
!	GCTTTTACCCCCTGTAATAT+AGG	-	chr5_1:5892677-5892696	None:intergenic	40.0%
!	ACTGATGGCGTATGAATTCA+CGG	+	chr5_1:5894631-5894650	Msa0713640:intron	40.0%
	ATGCATAGTACTGTCACTCA+CGG	+	chr5_1:5894788-5894807	Msa0713640:intron	40.0%
	CGTAACATGAACATGTAGTC+CGG	+	chr5_1:5895388-5895407	Msa0713640:exon	40.0%
	GTGGTGTTTGAGTATCAGAT+TGG	+	chr5_1:5895474-5895493	Msa0713640:three_prime_UTR	40.0%
	GCTCCTAATTATTTGTGGTG+TGG	+	chr5_1:5895524-5895543	Msa0713640:three_prime_UTR	40.0%
!!	TTTTGGTTGGTACTAGTAGG+AGG	+	chr5_1:5895578-5895597	Msa0713640:intron	40.0%
!!!	AGGTTCAACAGCTACTTTTG+TGG	+	chr5_1:5895617-5895636	Msa0713640:intron	40.0%
	CAGAAAGACAAGGGACTAAG+AGG	+	chr5_1:5889621-5889640	Msa0713640:five_prime_UTR	45.0%
	TCATCAAGACCGTATCATGG+CGG	+	chr5_1:5889658-5889677	Msa0713640:exon	45.0%
	TCTTTCTCTCCGCCATGATA+CGG	-	chr5_1:5889670-5889689	None:intergenic	45.0%
	ACTCTAGCTGCTCTTATTCC+TGG	+	chr5_1:5889719-5889738	Msa0713640:CDS	45.0%
	CAACATACCTTCTTCAAGCC+AGG	-	chr5_1:5889740-5889759	None:intergenic	45.0%
	ATGGGATCGAAACTACCGTT+TGG	+	chr5_1:5889993-5890012	Msa0713640:intron	45.0%
	ACGGACAAGACTTCAGTCAT+AGG	+	chr5_1:5890441-5890460	Msa0713640:CDS	45.0%
	CGCAGCTAAGTTACAAGTCA+TGG	+	chr5_1:5890565-5890584	Msa0713640:CDS	45.0%
	TAATGAAGATCTCCTCCACG+TGG	+	chr5_1:5890620-5890639	Msa0713640:CDS	45.0%
!!	AAATTTTGGCATCCACGTGG+AGG	-	chr5_1:5890635-5890654	None:intergenic	45.0%
!!	CCAAAATTTTGGCATCCACG+TGG	-	chr5_1:5890638-5890657	None:intergenic	45.0%
!	CCACGTGGATGCCAAAATTT+TGG	+	chr5_1:5890635-5890654	Msa0713640:CDS	45.0%
	AATAGCAGCGTCCTAGCTAT+TGG	+	chr5_1:5890753-5890772	Msa0713640:CDS	45.0%
	ATAGCAGCGTCCTAGCTATT+GGG	+	chr5_1:5890754-5890773	Msa0713640:CDS	45.0%
	GGATAGAATCCCCAATAGCT+AGG	-	chr5_1:5890767-5890786	None:intergenic	45.0%
!!	GGGAAAAAAATGGGCTAGAC+CGG	+	chr5_1:5890959-5890978	Msa0713640:intron	45.0%
!!	GGAAAAAAATGGGCTAGACC+GGG	+	chr5_1:5890960-5890979	Msa0713640:intron	45.0%
!!	GTGAGCCTATGATGGGTAAT+AGG	-	chr5_1:5891043-5891062	None:intergenic	45.0%
	GTCGACCTGATGTGCTTAAT+AGG	+	chr5_1:5891361-5891380	Msa0713640:intron	45.0%
!!	GACCGCCTTGTTTGATAAGA+AGG	-	chr5_1:5891451-5891470	None:intergenic	45.0%
	TTGTATTGTAGGCCCTTGTC+TGG	+	chr5_1:5891961-5891980	Msa0713640:intron	45.0%
	CTAGGTCAAGTACCAGACAA+GGG	-	chr5_1:5891976-5891995	None:intergenic	45.0%
	ACTAGGTCAAGTACCAGACA+AGG	-	chr5_1:5891977-5891996	None:intergenic	45.0%
!	TTTCCTCTAGAGATGGGACT+AGG	-	chr5_1:5891994-5892013	None:intergenic	45.0%
	GTATCATCGACATCCCAACT+AGG	+	chr5_1:5892074-5892093	Msa0713640:intron	45.0%
!	CGACATACAATTTGAGACGG+AGG	+	chr5_1:5892318-5892337	Msa0713640:intron	45.0%
!	ATACAATTTGAGACGGAGGG+AGG	+	chr5_1:5892322-5892341	Msa0713640:intron	45.0%
	AACTCTCAACCGACAACCTA+AGG	-	chr5_1:5892419-5892438	None:intergenic	45.0%
!	TATGCATAGTTCGGCTCGTT+TGG	+	chr5_1:5892552-5892571	Msa0713640:intron	45.0%
	AGTAGCTACTAGTCCCACAT+CGG	+	chr5_1:5894694-5894713	Msa0713640:intron	45.0%
	TTAGGTTCAACTCGGTTGGA+GGG	-	chr5_1:5894893-5894912	None:intergenic	45.0%
	CACTGCTATCTATGCCAATG+AGG	-	chr5_1:5895457-5895476	None:intergenic	45.0%
	CTCATTGGCATAGATAGCAG+TGG	+	chr5_1:5895455-5895474	Msa0713640:three_prime_UTR	45.0%
!!!	TTATATAAATATTTTTTGTT+CGG	+	chr5_1:5889821-5889840	Msa0713640:intron	5.0%
!!!	ATTATTTTTATTTTTTATTG+GGG	+	chr5_1:5892860-5892879	Msa0713640:intron	5.0%
!!	AAAAAATATTAAAAAAATTC+TGG	+	chr5_1:5892910-5892929	Msa0713640:intron	5.0%
!!	AAAAAAATATTAAAAAATTC+TGG	-	chr5_1:5893897-5893916	None:intergenic	5.0%
!!	AATGAAAAATTAATAAAAAA+TGG	-	chr5_1:5893921-5893940	None:intergenic	5.0%
!!	AAAAAAATATAAAAAAATTC+TGG	-	chr5_1:5893947-5893966	None:intergenic	5.0%
!!!	ATTTTTTTTTTATAAAATTC+TGG	-	chr5_1:5893987-5894006	None:intergenic	5.0%
!!!	TATTTTTTATTTTTTTATAG+GGG	-	chr5_1:5894047-5894066	None:intergenic	5.0%
!!!	ATATTTTTTTTTTTTTAAAC+AGG	+	chr5_1:5894400-5894419	Msa0713640:intron	5.0%
	TAGCAGCGTCCTAGCTATTG+GGG	+	chr5_1:5890755-5890774	Msa0713640:CDS	50.0%
	TCAAACAAGGCGGTCGAGTT+AGG	+	chr5_1:5891456-5891475	Msa0713640:intron	50.0%
	GTTAGGTGCCAAGCCATTGT+TGG	+	chr5_1:5891489-5891508	Msa0713640:intron	50.0%
	TGACCTAGTCCCATCTCTAG+AGG	+	chr5_1:5891988-5892007	Msa0713640:intron	50.0%
	CATCGACATCCCAACTAGGT+TGG	+	chr5_1:5892078-5892097	Msa0713640:intron	50.0%
	TTTGTGGTGGCATAGGATGG+AGG	-	chr5_1:5892116-5892135	None:intergenic	50.0%
!!	GGAGATTCTGCTGACTCAAC+TGG	-	chr5_1:5894128-5894147	None:intergenic	50.0%
	AGTCAGCAGAATCTCCTACG+TGG	+	chr5_1:5892791-5892810	Msa0713640:intron	50.0%
	GTCAGCAGATTCTGTTGACG+TGG	+	chr5_1:5892822-5892841	Msa0713640:intron	50.0%
	AGTCAGCAGAATCTCCTACG+TGG	-	chr5_1:5892791-5892810	None:intergenic	50.0%
!!	GGAGATTCTGCTGACTCAAC+TGG	+	chr5_1:5894128-5894147	Msa0713640:intron	50.0%
!!	TGCTGACTCAACTGGCTCAT+GGG	+	chr5_1:5894136-5894155	Msa0713640:intron	50.0%
	GTTAGGTTCAACTCGGTTGG+AGG	-	chr5_1:5894894-5894913	None:intergenic	50.0%
	CTCGTTAGGTTCAACTCGGT+TGG	-	chr5_1:5894897-5894916	None:intergenic	50.0%
!	TCGGCTCGTTAGGTTCAACT+CGG	-	chr5_1:5894901-5894920	None:intergenic	50.0%
	AGTTGACGAACAGCTCGACT+CGG	-	chr5_1:5894920-5894939	None:intergenic	50.0%
	TCGAGTCGAATCGAACTCGT+CGG	-	chr5_1:5895043-5895062	None:intergenic	50.0%
!!	GAGGTCTGCGCTTTTGTTTG+AGG	+	chr5_1:5895597-5895616	Msa0713640:intron	50.0%
	AGACCGGGTCGAACTTTGCA+AGG	+	chr5_1:5890975-5890994	Msa0713640:intron	55.0%
	AGGCCTTGCAAAGTTCGACC+CGG	-	chr5_1:5890981-5891000	None:intergenic	55.0%
	GGTGCCAAGCCATTGTTGGA+CGG	+	chr5_1:5891493-5891512	Msa0713640:intron	55.0%
	CAAGCCGTCCAACAATGGCT+TGG	-	chr5_1:5891500-5891519	None:intergenic	55.0%
	CAGGTCAAGCCGTCCAACAA+TGG	-	chr5_1:5891505-5891524	None:intergenic	55.0%
	CATTGTTGGACGGCTTGACC+TGG	+	chr5_1:5891503-5891522	Msa0713640:intron	55.0%
!!	CATAGGATGGAGGTGTCTCG+GGG	-	chr5_1:5892106-5892125	None:intergenic	55.0%
!!	GCATAGGATGGAGGTGTCTC+GGG	-	chr5_1:5892107-5892126	None:intergenic	55.0%
!!	GGCATAGGATGGAGGTGTCT+CGG	-	chr5_1:5892108-5892127	None:intergenic	55.0%
!!	TGCTGACTCAACTGGCTCAG+GGG	-	chr5_1:5892779-5892798	None:intergenic	55.0%
!!	CTGCTGACTCAACTGGCTCA+GGG	-	chr5_1:5894135-5894154	None:intergenic	55.0%
!!	TCTGCTGACTCAACTGGCTC+AGG	-	chr5_1:5894134-5894153	None:intergenic	55.0%
	GTCAGCAGATTCTGCTGACG+TGG	-	chr5_1:5894093-5894112	None:intergenic	55.0%
!!	CTGCTGACTCAACTGGCTCA+TGG	+	chr5_1:5894135-5894154	Msa0713640:intron	55.0%
!	GCTGACTCAACTGGCTCATG+GGG	+	chr5_1:5894137-5894156	Msa0713640:intron	55.0%
	TGACCTGGTCCCACCTCTAG+AGG	+	chr5_1:5891518-5891537	Msa0713640:intron	60.0%
!	TGTCCTCTAGAGGTGGGACC+AGG	-	chr5_1:5891524-5891543	None:intergenic	60.0%
!	CTCGGGGTGCCAACCTAGTT+GGG	-	chr5_1:5892090-5892109	None:intergenic	60.0%
!	TCTCGGGGTGCCAACCTAGT+TGG	-	chr5_1:5892091-5892110	None:intergenic	60.0%
!	GCTGACTCAACTGGCTCAGG+GGG	-	chr5_1:5892778-5892797	None:intergenic	60.0%
	GCTGACGTAGTGTGCCACGT+AGG	+	chr5_1:5894107-5894126	Msa0713640:intron	60.0%
!!	ACAGCTCGACTCGGCTCGTT+AGG	-	chr5_1:5894911-5894930	None:intergenic	60.0%
	GCTGACGTAGCGTGCCACGT+AGG	-	chr5_1:5892808-5892827	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	5889052	5895746	5889052	ID=Msa0713640;Name=Msa0713640
chr5_1	mRNA	5889052	5895746	5889052	ID=Msa0713640-mRNA-1;Parent=Msa0713640;Name=Msa0713640-mRNA-1;_AED=0.02;_eAED=0.02;_QI=498\|1\|1\|1\|0.5\|0.4\|5\|303\|174
chr5_1	exon	5889052	5889186	5889052	ID=Msa0713640-mRNA-1:exon:2568;Parent=Msa0713640-mRNA-1
chr5_1	exon	5889311	5889751	5889311	ID=Msa0713640-mRNA-1:exon:2569;Parent=Msa0713640-mRNA-1
chr5_1	exon	5890441	5890809	5890441	ID=Msa0713640-mRNA-1:exon:2570;Parent=Msa0713640-mRNA-1
chr5_1	exon	5895315	5895595	5895315	ID=Msa0713640-mRNA-1:exon:2571;Parent=Msa0713640-mRNA-1
chr5_1	exon	5895647	5895746	5895647	ID=Msa0713640-mRNA-1:exon:2572;Parent=Msa0713640-mRNA-1
chr5_1	five_prime_UTR	5889052	5889186	5889052	ID=Msa0713640-mRNA-1:five_prime_utr;Parent=Msa0713640-mRNA-1
chr5_1	five_prime_UTR	5889311	5889673	5889311	ID=Msa0713640-mRNA-1:five_prime_utr;Parent=Msa0713640-mRNA-1
chr5_1	CDS	5889674	5889751	5889674	ID=Msa0713640-mRNA-1:cds;Parent=Msa0713640-mRNA-1
chr5_1	CDS	5890441	5890809	5890441	ID=Msa0713640-mRNA-1:cds;Parent=Msa0713640-mRNA-1
chr5_1	CDS	5895315	5895392	5895315	ID=Msa0713640-mRNA-1:cds;Parent=Msa0713640-mRNA-1
chr5_1	three_prime_UTR	5895393	5895595	5895393	ID=Msa0713640-mRNA-1:three_prime_utr;Parent=Msa0713640-mRNA-1
chr5_1	three_prime_UTR	5895647	5895746	5895647	ID=Msa0713640-mRNA-1:three_prime_utr;Parent=Msa0713640-mRNA-1

Gene Sequence

>Msa0713640

ATGGCGGAGAGAAAGAGAAGAGAAAAACTCAGTCAGTGCTTGATTACTCTAGCTGCTCTTATTCCTGGCTTGAAGAAGACGGACAAGACTTCAGTCATAGGAGATGCTATCAAGCATGTGAAAGAGCTCCAAGAACGTTTGAGAGTATTAGAAGAACAGAACAAGAATAGTCTTATTGAATCTGTAGTGACGCTTAACAAATCGCAGCTAAGTTACAAGTCATGGAGTGATTATGGTTCTAAGGCTGCTAGTTCTATTAATGAAGATCTCCTCCACGTGGATGCCAAAATTTTGGACAAAAACGTGCTCATAAGGATCCAGTGCCAAAAGCAAAAGAGTTTTTTGCTTAATAAATTGGTTGAGATTCAAAAGCTCCATCTCTCTGTTGTTAATAGCAGCGTCCTAGCTATTGGGGATTCTATCCTTGACATAACAATCATTGCTCGGAAAGAAACAGGATACAACTTGACCGAAAATGATCTTGTAAAAAGCGTACGCGCTGCTGTATTGAGATCCATGTCGTAA

Protein sequence

>Msa0713640

MAERKRREKLSQCLITLAALIPGLKKTDKTSVIGDAIKHVKELQERLRVLEEQNKNSLIESVVTLNKSQLSYKSWSDYGSKAASSINEDLLHVDAKILDKNVLIRIQCQKQKSFLLNKLVEIQKLHLSVVNSSVLAIGDSILDITIIARKETGYNLTENDLVKSVRAAVLRSMS*