AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0799950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0799950 MtrunA17_Chr5g0405371 95.349 215 10 0 1 215 1 215 1.65e-150 416
Msa0799950 MtrunA17_Chr3g0142591 46.544 217 105 9 1 210 1 213 3.49e-45 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0799950 AT3G51220.1 37.745 204 97 7 11 204 1 184 6.80e-29 107
Msa0799950 AT2G17940.1 38.028 213 108 9 1 199 1 203 8.74e-26 99.8
Msa0799950 AT1G75720.2 36.000 200 104 6 13 204 7 190 2.19e-21 87.8
Msa0799950 AT1G75720.1 35.644 202 104 7 13 204 7 192 5.70e-20 84.3

Find 50 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTTGATCAAGTTCTTTC+TGG 0.097748 5_3:+13379557 None:intergenic
CTGAAGACTCCTTAAGCTTT+TGG 0.185469 5_3:+13379202 None:intergenic
TGTTTGTTACTTGTATTAAA+TGG 0.199448 5_3:-13380658 Msa0799950:five_prime_UTR
TGACTCCTAGCTCCTTAATT+TGG 0.203779 5_3:-13379003 Msa0799950:three_prime_UTR
TTACCTTTCTTAACTGAATT+AGG 0.242681 5_3:+13379298 None:intergenic
AGCTCAAGTTATTCCTAATA+AGG 0.262145 5_3:-13379338 Msa0799950:CDS
AGCTGCTAATGCTCCAGATT+TGG 0.286744 5_3:+13379657 None:intergenic
GCTCCTTAATTTGGTTGCTT+TGG 0.288800 5_3:-13378994 Msa0799950:three_prime_UTR
ACAAGTAACTCATCCTTATT+AGG 0.296116 5_3:+13379325 None:intergenic
TTTAGTAGCAAGAGAGATAT+TGG 0.306914 5_3:-13378965 Msa0799950:three_prime_UTR
ACTCCAAAGCAACCAAATTA+AGG 0.349052 5_3:+13378991 None:intergenic
AATATGGACAGAGGTGAAAA+TGG 0.371125 5_3:-13380522 Msa0799950:CDS
TTGATGTCTTCGTTTGTCTC+TGG 0.375631 5_3:+13379475 None:intergenic
GAGAACCTCTTTGAGCTTGT+TGG 0.384169 5_3:+13380392 None:intergenic
GTTGACTCTCCAAAAGCTTA+AGG 0.394436 5_3:-13379211 Msa0799950:exon
TTTGGAGAAAGAGTCTTAGT+TGG 0.403597 5_3:-13380426 Msa0799950:CDS
TGATCAAACAAAGAAAGAAT+TGG 0.406285 5_3:-13379545 Msa0799950:CDS
TGTAACTATATAGCTCAATA+TGG 0.413225 5_3:-13380538 Msa0799950:exon
GGTCATGCACAATCCAAATC+TGG 0.454939 5_3:-13379670 Msa0799950:CDS
TGAAAATGGTACATTGATCA+TGG 0.455680 5_3:-13380508 Msa0799950:CDS
GCTTCTTTAACAGACTTGAA+TGG 0.456171 5_3:+13380459 None:intergenic
AAGACAATGATGCCTTTGAT+AGG 0.460049 5_3:-13379271 Msa0799950:CDS
CAATGATGCCTTTGATAGGA+TGG 0.501600 5_3:-13379267 Msa0799950:CDS
GTAGACACATTTCATGAATG+AGG 0.507719 5_3:+13379144 None:intergenic
ATTGTTTCAAAACAAGAACT+TGG 0.509606 5_3:+13379065 None:intergenic
CAAAATGAAGCAAGGGAGGC+TGG 0.509944 5_3:-13379691 Msa0799950:CDS
TTTGATCAAGTTCTTTCTGG+AGG 0.515446 5_3:+13379560 None:intergenic
TTGATCAAGTTCTTTCTGGA+GGG 0.519777 5_3:+13379561 None:intergenic
AGACCTAATTCAGTTAAGAA+AGG 0.526990 5_3:-13379301 Msa0799950:CDS
GAGAAAAGCCATCCTATCAA+AGG 0.536393 5_3:+13379259 None:intergenic
GATGCATTGAGCTAAGAAGT+TGG 0.538285 5_3:+13379588 None:intergenic
TTCAAAACAAGAACTTGGCA+AGG 0.551726 5_3:+13379070 None:intergenic
ATTAATCAGAACATGCAAGT+TGG 0.552675 5_3:+13379122 None:intergenic
TTAATACAAGTAACAAACAT+AGG 0.553649 5_3:+13380662 None:intergenic
GAAAGAATTGGAAGAAACAA+AGG 0.559645 5_3:-13379533 Msa0799950:CDS
AGCAACCAAATTAAGGAGCT+AGG 0.565791 5_3:+13378998 None:intergenic
TTCTCACTTTCTATTTCACA+CGG 0.579770 5_3:+13378940 None:intergenic
TTAAGATGCAAAATGAAGCA+AGG 0.584969 5_3:-13379699 Msa0799950:intron
GAAAATGGTACATTGATCAT+GGG 0.588501 5_3:-13380507 Msa0799950:CDS
TAAGATGCAAAATGAAGCAA+GGG 0.590224 5_3:-13379698 Msa0799950:intron
TGATGATGATATTGATGATG+AGG 0.592844 5_3:-13379410 Msa0799950:CDS
ATAACTTGAGCTAATACATG+AGG 0.605728 5_3:+13379349 None:intergenic
GACATCAAGTTCATTGCGAA+CGG 0.608141 5_3:-13379460 Msa0799950:CDS
TTATGCCAACAAGCTCAAAG+AGG 0.613740 5_3:-13380397 Msa0799950:intron
GGACGTGCAGAGATTGACAC+TGG 0.639207 5_3:-13380486 Msa0799950:CDS
GATGCAAAATGAAGCAAGGG+AGG 0.645402 5_3:-13379695 Msa0799950:CDS
TCAGCTATAGAATATTTGAG+TGG 0.649845 5_3:+13378847 None:intergenic
TAACTTGAGCTAATACATGA+GGG 0.666412 5_3:+13379350 None:intergenic
CATTGCGAACGGAACCAATG+TGG 0.679904 5_3:-13379449 Msa0799950:CDS
ATATAGCTCAATATGGACAG+AGG 0.700667 5_3:-13380531 Msa0799950:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATACAAGTAACAAACAT+AGG + chr5_3:13378879-13378898 None:intergenic 20.0%
!!! TGTTTGTTACTTGTATTAAA+TGG - chr5_3:13378880-13378899 Msa0799950:three_prime_UTR 20.0%
!! AAACTCAAACATATTAAATG+CGG - chr5_3:13379552-13379571 Msa0799950:CDS 20.0%
!!! TAATCAATTTAAGACTATTG+TGG + chr5_3:13379604-13379623 None:intergenic 20.0%
!! AGTCTTAAATTGATTAATTC+AGG - chr5_3:13379608-13379627 Msa0799950:CDS 20.0%
!! TTTATAAACATAAGAATGCA+TGG - chr5_3:13379735-13379754 Msa0799950:intron 20.0%
!! TTAATACAAGTAACAAACAT+AGG + chr5_3:13378879-13378898 None:intergenic 20.0%
!!! TGTTTGTTACTTGTATTAAA+TGG - chr5_3:13378880-13378899 Msa0799950:three_prime_UTR 20.0%
!! AAACTCAAACATATTAAATG+CGG - chr5_3:13379552-13379571 Msa0799950:CDS 20.0%
!!! TAATCAATTTAAGACTATTG+TGG + chr5_3:13379604-13379623 None:intergenic 20.0%
!! AGTCTTAAATTGATTAATTC+AGG - chr5_3:13379608-13379627 Msa0799950:CDS 20.0%
!! TTTATAAACATAAGAATGCA+TGG - chr5_3:13379735-13379754 Msa0799950:intron 20.0%
! TGTAACTATATAGCTCAATA+TGG - chr5_3:13379000-13379019 Msa0799950:three_prime_UTR 25.0%
! CAATATAACTTGATGAATAG+AGG + chr5_3:13379193-13379212 None:intergenic 25.0%
! TATGTAACTAATTGCATGTT+TGG - chr5_3:13379220-13379239 Msa0799950:CDS 25.0%
!! ATTTTTGTCAAATAGTCTAC+TGG - chr5_3:13379527-13379546 Msa0799950:CDS 25.0%
! TGATCAAACAAAGAAAGAAT+TGG - chr5_3:13379993-13380012 Msa0799950:intron 25.0%
! TTACCTTTCTTAACTGAATT+AGG + chr5_3:13380243-13380262 None:intergenic 25.0%
!! CTTTTCTCAAAAAGTAAGAA+GGG - chr5_3:13380294-13380313 Msa0799950:intron 25.0%
! ATTGTTTCAAAACAAGAACT+TGG + chr5_3:13380476-13380495 None:intergenic 25.0%
!!! TTCTTGTTTTGAAACAATGT+AGG - chr5_3:13380478-13380497 Msa0799950:CDS 25.0%
!!! TGAATAAAGTTATTTTGTGC+AGG - chr5_3:13380623-13380642 Msa0799950:five_prime_UTR 25.0%
! TGTAACTATATAGCTCAATA+TGG - chr5_3:13379000-13379019 Msa0799950:three_prime_UTR 25.0%
! CAATATAACTTGATGAATAG+AGG + chr5_3:13379193-13379212 None:intergenic 25.0%
! TATGTAACTAATTGCATGTT+TGG - chr5_3:13379220-13379239 Msa0799950:CDS 25.0%
!! ATTTTTGTCAAATAGTCTAC+TGG - chr5_3:13379527-13379546 Msa0799950:CDS 25.0%
! TGATCAAACAAAGAAAGAAT+TGG - chr5_3:13379993-13380012 Msa0799950:intron 25.0%
! TTACCTTTCTTAACTGAATT+AGG + chr5_3:13380243-13380262 None:intergenic 25.0%
!! CTTTTCTCAAAAAGTAAGAA+GGG - chr5_3:13380294-13380313 Msa0799950:intron 25.0%
! ATTGTTTCAAAACAAGAACT+TGG + chr5_3:13380476-13380495 None:intergenic 25.0%
!!! TTCTTGTTTTGAAACAATGT+AGG - chr5_3:13380478-13380497 Msa0799950:CDS 25.0%
!!! TGAATAAAGTTATTTTGTGC+AGG - chr5_3:13380623-13380642 Msa0799950:five_prime_UTR 25.0%
TGAAAATGGTACATTGATCA+TGG - chr5_3:13379030-13379049 Msa0799950:three_prime_UTR 30.0%
GAAAATGGTACATTGATCAT+GGG - chr5_3:13379031-13379050 Msa0799950:three_prime_UTR 30.0%
! AAAGAAGCTGTTCTTTTGTT+TGG - chr5_3:13379094-13379113 Msa0799950:three_prime_UTR 30.0%
TAATTGCATGTTTGGATTCA+CGG - chr5_3:13379228-13379247 Msa0799950:CDS 30.0%
ACATATTAAATGCGGAAAAG+AGG - chr5_3:13379560-13379579 Msa0799950:CDS 30.0%
CATATTAAATGCGGAAAAGA+GGG - chr5_3:13379561-13379580 Msa0799950:CDS 30.0%
TTAAGATGCAAAATGAAGCA+AGG - chr5_3:13379839-13379858 Msa0799950:intron 30.0%
TAAGATGCAAAATGAAGCAA+GGG - chr5_3:13379840-13379859 Msa0799950:intron 30.0%
TTGTTTGATCAAGTTCTTTC+TGG + chr5_3:13379984-13380003 None:intergenic 30.0%
GAAAGAATTGGAAGAAACAA+AGG - chr5_3:13380005-13380024 Msa0799950:intron 30.0%
!!! TTGTGTTTTGATTTCCACAT+TGG + chr5_3:13380106-13380125 None:intergenic 30.0%
!! TGATGATGATATTGATGATG+AGG - chr5_3:13380128-13380147 Msa0799950:intron 30.0%
TAACTTGAGCTAATACATGA+GGG + chr5_3:13380191-13380210 None:intergenic 30.0%
ATAACTTGAGCTAATACATG+AGG + chr5_3:13380192-13380211 None:intergenic 30.0%
AGCTCAAGTTATTCCTAATA+AGG - chr5_3:13380200-13380219 Msa0799950:intron 30.0%
ACAAGTAACTCATCCTTATT+AGG + chr5_3:13380216-13380235 None:intergenic 30.0%
AGACCTAATTCAGTTAAGAA+AGG - chr5_3:13380237-13380256 Msa0799950:intron 30.0%
! GCTTTTCTCAAAAAGTAAGA+AGG - chr5_3:13380293-13380312 Msa0799950:intron 30.0%
ATTAATCAGAACATGCAAGT+TGG + chr5_3:13380419-13380438 None:intergenic 30.0%
TTTAGTAGCAAGAGAGATAT+TGG - chr5_3:13380573-13380592 Msa0799950:five_prime_UTR 30.0%
TTCTCACTTTCTATTTCACA+CGG + chr5_3:13380601-13380620 None:intergenic 30.0%
TGAAAATGGTACATTGATCA+TGG - chr5_3:13379030-13379049 Msa0799950:three_prime_UTR 30.0%
GAAAATGGTACATTGATCAT+GGG - chr5_3:13379031-13379050 Msa0799950:three_prime_UTR 30.0%
! AAAGAAGCTGTTCTTTTGTT+TGG - chr5_3:13379094-13379113 Msa0799950:three_prime_UTR 30.0%
TAATTGCATGTTTGGATTCA+CGG - chr5_3:13379228-13379247 Msa0799950:CDS 30.0%
ACATATTAAATGCGGAAAAG+AGG - chr5_3:13379560-13379579 Msa0799950:CDS 30.0%
CATATTAAATGCGGAAAAGA+GGG - chr5_3:13379561-13379580 Msa0799950:CDS 30.0%
TTAAGATGCAAAATGAAGCA+AGG - chr5_3:13379839-13379858 Msa0799950:intron 30.0%
TAAGATGCAAAATGAAGCAA+GGG - chr5_3:13379840-13379859 Msa0799950:intron 30.0%
TTGTTTGATCAAGTTCTTTC+TGG + chr5_3:13379984-13380003 None:intergenic 30.0%
GAAAGAATTGGAAGAAACAA+AGG - chr5_3:13380005-13380024 Msa0799950:intron 30.0%
!!! TTGTGTTTTGATTTCCACAT+TGG + chr5_3:13380106-13380125 None:intergenic 30.0%
!! TGATGATGATATTGATGATG+AGG - chr5_3:13380128-13380147 Msa0799950:intron 30.0%
TAACTTGAGCTAATACATGA+GGG + chr5_3:13380191-13380210 None:intergenic 30.0%
ATAACTTGAGCTAATACATG+AGG + chr5_3:13380192-13380211 None:intergenic 30.0%
AGCTCAAGTTATTCCTAATA+AGG - chr5_3:13380200-13380219 Msa0799950:intron 30.0%
ACAAGTAACTCATCCTTATT+AGG + chr5_3:13380216-13380235 None:intergenic 30.0%
AGACCTAATTCAGTTAAGAA+AGG - chr5_3:13380237-13380256 Msa0799950:intron 30.0%
! GCTTTTCTCAAAAAGTAAGA+AGG - chr5_3:13380293-13380312 Msa0799950:intron 30.0%
ATTAATCAGAACATGCAAGT+TGG + chr5_3:13380419-13380438 None:intergenic 30.0%
TTTAGTAGCAAGAGAGATAT+TGG - chr5_3:13380573-13380592 Msa0799950:five_prime_UTR 30.0%
TTCTCACTTTCTATTTCACA+CGG + chr5_3:13380601-13380620 None:intergenic 30.0%
ATATAGCTCAATATGGACAG+AGG - chr5_3:13379007-13379026 Msa0799950:three_prime_UTR 35.0%
AATATGGACAGAGGTGAAAA+TGG - chr5_3:13379016-13379035 Msa0799950:three_prime_UTR 35.0%
GCTTCTTTAACAGACTTGAA+TGG + chr5_3:13379082-13379101 None:intergenic 35.0%
TTTGGAGAAAGAGTCTTAGT+TGG - chr5_3:13379112-13379131 Msa0799950:three_prime_UTR 35.0%
! AAAGCGAGACATCACAATTT+TGG - chr5_3:13379267-13379286 Msa0799950:CDS 35.0%
GAAACCAAGCAAAAACTTGA+AGG - chr5_3:13379913-13379932 Msa0799950:intron 35.0%
!! TGATCCTTCAAGTTTTTGCT+TGG + chr5_3:13379920-13379939 None:intergenic 35.0%
TTGATCAAGTTCTTTCTGGA+GGG + chr5_3:13379980-13379999 None:intergenic 35.0%
TTTGATCAAGTTCTTTCTGG+AGG + chr5_3:13379981-13380000 None:intergenic 35.0%
AAGACAATGATGCCTTTGAT+AGG - chr5_3:13380267-13380286 Msa0799950:intron 35.0%
GTAGACACATTTCATGAATG+AGG + chr5_3:13380397-13380416 None:intergenic 35.0%
TTCAAAACAAGAACTTGGCA+AGG + chr5_3:13380471-13380490 None:intergenic 35.0%
ACTCCAAAGCAACCAAATTA+AGG + chr5_3:13380550-13380569 None:intergenic 35.0%
ATATAGCTCAATATGGACAG+AGG - chr5_3:13379007-13379026 Msa0799950:three_prime_UTR 35.0%
AATATGGACAGAGGTGAAAA+TGG - chr5_3:13379016-13379035 Msa0799950:three_prime_UTR 35.0%
GCTTCTTTAACAGACTTGAA+TGG + chr5_3:13379082-13379101 None:intergenic 35.0%
TTTGGAGAAAGAGTCTTAGT+TGG - chr5_3:13379112-13379131 Msa0799950:three_prime_UTR 35.0%
! AAAGCGAGACATCACAATTT+TGG - chr5_3:13379267-13379286 Msa0799950:CDS 35.0%
GAAACCAAGCAAAAACTTGA+AGG - chr5_3:13379913-13379932 Msa0799950:intron 35.0%
!! TGATCCTTCAAGTTTTTGCT+TGG + chr5_3:13379920-13379939 None:intergenic 35.0%
TTGATCAAGTTCTTTCTGGA+GGG + chr5_3:13379980-13379999 None:intergenic 35.0%
TTTGATCAAGTTCTTTCTGG+AGG + chr5_3:13379981-13380000 None:intergenic 35.0%
AAGACAATGATGCCTTTGAT+AGG - chr5_3:13380267-13380286 Msa0799950:intron 35.0%
GTAGACACATTTCATGAATG+AGG + chr5_3:13380397-13380416 None:intergenic 35.0%
TTCAAAACAAGAACTTGGCA+AGG + chr5_3:13380471-13380490 None:intergenic 35.0%
ACTCCAAAGCAACCAAATTA+AGG + chr5_3:13380550-13380569 None:intergenic 35.0%
TTATGCCAACAAGCTCAAAG+AGG - chr5_3:13379141-13379160 Msa0799950:three_prime_UTR 40.0%
TCGACAAAACTGTAGTGACA+TGG + chr5_3:13379327-13379346 None:intergenic 40.0%
GATAGTTCAGCTCAATCACT+CGG + chr5_3:13379374-13379393 None:intergenic 40.0%
GCACATTAGCAAGTGAATCA+TGG + chr5_3:13379711-13379730 None:intergenic 40.0%
GATGCATTGAGCTAAGAAGT+TGG + chr5_3:13379953-13379972 None:intergenic 40.0%
TTGATGTCTTCGTTTGTCTC+TGG + chr5_3:13380066-13380085 None:intergenic 40.0%
GACATCAAGTTCATTGCGAA+CGG - chr5_3:13380078-13380097 Msa0799950:intron 40.0%
CAATGATGCCTTTGATAGGA+TGG - chr5_3:13380271-13380290 Msa0799950:intron 40.0%
GAGAAAAGCCATCCTATCAA+AGG + chr5_3:13380282-13380301 None:intergenic 40.0%
! GTTGACTCTCCAAAAGCTTA+AGG - chr5_3:13380327-13380346 Msa0799950:intron 40.0%
! CTGAAGACTCCTTAAGCTTT+TGG + chr5_3:13380339-13380358 None:intergenic 40.0%
TGACTCCTAGCTCCTTAATT+TGG - chr5_3:13380535-13380554 Msa0799950:exon 40.0%
AGCAACCAAATTAAGGAGCT+AGG + chr5_3:13380543-13380562 None:intergenic 40.0%
! GCTCCTTAATTTGGTTGCTT+TGG - chr5_3:13380544-13380563 Msa0799950:five_prime_UTR 40.0%
TTATGCCAACAAGCTCAAAG+AGG - chr5_3:13379141-13379160 Msa0799950:three_prime_UTR 40.0%
TCGACAAAACTGTAGTGACA+TGG + chr5_3:13379327-13379346 None:intergenic 40.0%
GATAGTTCAGCTCAATCACT+CGG + chr5_3:13379374-13379393 None:intergenic 40.0%
GCACATTAGCAAGTGAATCA+TGG + chr5_3:13379711-13379730 None:intergenic 40.0%
GATGCATTGAGCTAAGAAGT+TGG + chr5_3:13379953-13379972 None:intergenic 40.0%
TTGATGTCTTCGTTTGTCTC+TGG + chr5_3:13380066-13380085 None:intergenic 40.0%
GACATCAAGTTCATTGCGAA+CGG - chr5_3:13380078-13380097 Msa0799950:intron 40.0%
CAATGATGCCTTTGATAGGA+TGG - chr5_3:13380271-13380290 Msa0799950:intron 40.0%
GAGAAAAGCCATCCTATCAA+AGG + chr5_3:13380282-13380301 None:intergenic 40.0%
! GTTGACTCTCCAAAAGCTTA+AGG - chr5_3:13380327-13380346 Msa0799950:intron 40.0%
! CTGAAGACTCCTTAAGCTTT+TGG + chr5_3:13380339-13380358 None:intergenic 40.0%
TGACTCCTAGCTCCTTAATT+TGG - chr5_3:13380535-13380554 Msa0799950:exon 40.0%
AGCAACCAAATTAAGGAGCT+AGG + chr5_3:13380543-13380562 None:intergenic 40.0%
! GCTCCTTAATTTGGTTGCTT+TGG - chr5_3:13380544-13380563 Msa0799950:five_prime_UTR 40.0%
GAGAACCTCTTTGAGCTTGT+TGG + chr5_3:13379149-13379168 None:intergenic 45.0%
!! TCAATCACTCGGTGCATGTT+TGG + chr5_3:13379363-13379382 None:intergenic 45.0%
TGCATGGCAACTCATCAATG+AGG - chr5_3:13379751-13379770 Msa0799950:intron 45.0%
GATGCAAAATGAAGCAAGGG+AGG - chr5_3:13379843-13379862 Msa0799950:intron 45.0%
GGTCATGCACAATCCAAATC+TGG - chr5_3:13379868-13379887 Msa0799950:intron 45.0%
AGCTGCTAATGCTCCAGATT+TGG + chr5_3:13379884-13379903 None:intergenic 45.0%
GAGAACCTCTTTGAGCTTGT+TGG + chr5_3:13379149-13379168 None:intergenic 45.0%
!! TCAATCACTCGGTGCATGTT+TGG + chr5_3:13379363-13379382 None:intergenic 45.0%
TGCATGGCAACTCATCAATG+AGG - chr5_3:13379751-13379770 Msa0799950:intron 45.0%
GATGCAAAATGAAGCAAGGG+AGG - chr5_3:13379843-13379862 Msa0799950:intron 45.0%
GGTCATGCACAATCCAAATC+TGG - chr5_3:13379868-13379887 Msa0799950:intron 45.0%
AGCTGCTAATGCTCCAGATT+TGG + chr5_3:13379884-13379903 None:intergenic 45.0%
CAAAATGAAGCAAGGGAGGC+TGG - chr5_3:13379847-13379866 Msa0799950:intron 50.0%
CATTGCGAACGGAACCAATG+TGG - chr5_3:13380089-13380108 Msa0799950:intron 50.0%
CAAAATGAAGCAAGGGAGGC+TGG - chr5_3:13379847-13379866 Msa0799950:intron 50.0%
CATTGCGAACGGAACCAATG+TGG - chr5_3:13380089-13380108 Msa0799950:intron 50.0%
GGACGTGCAGAGATTGACAC+TGG - chr5_3:13379052-13379071 Msa0799950:three_prime_UTR 55.0%
GGACGTGCAGAGATTGACAC+TGG - chr5_3:13379052-13379071 Msa0799950:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 13378855 13380705 13378855 ID=Msa0799950;Name=Msa0799950
chr5_3 mRNA 13378855 13380705 13378855 ID=Msa0799950-mRNA-1;Parent=Msa0799950;Name=Msa0799950-mRNA-1;_AED=0.01;_eAED=0.01;_QI=164|1|1|1|1|1|2|358|215
chr5_3 exon 13378855 13379716 13378855 ID=Msa0799950-mRNA-1:exon:5471;Parent=Msa0799950-mRNA-1
chr5_3 exon 13380398 13380705 13380398 ID=Msa0799950-mRNA-1:exon:5470;Parent=Msa0799950-mRNA-1
chr5_3 five_prime_UTR 13380542 13380705 13380542 ID=Msa0799950-mRNA-1:five_prime_utr;Parent=Msa0799950-mRNA-1
chr5_3 CDS 13380398 13380541 13380398 ID=Msa0799950-mRNA-1:cds;Parent=Msa0799950-mRNA-1
chr5_3 CDS 13379213 13379716 13379213 ID=Msa0799950-mRNA-1:cds;Parent=Msa0799950-mRNA-1
chr5_3 three_prime_UTR 13378855 13379212 13378855 ID=Msa0799950-mRNA-1:three_prime_utr;Parent=Msa0799950-mRNA-1
Gene Sequence

>Msa0799950

ATGGACAGAGGTGAAAATGGTACATTGATCATGGGACGTGCAGAGATTGACACTGGAGCTCCATTCAAGTCTGTTAAAGAAGCTGTTCTTTTGTTTGGAGAAAGAGTCTTAGTTGGAGAAATTTATGCCAACAAGCTCAAAGAGATGCAAAATGAAGCAAGGGAGGCTGGTCATGCACAATCCAAATCTGGAGCATTAGCAGCTGAGCTAGAAGAAACCAAGCAAAAACTTGAAGGATCAAAAGAAGAAGCCAACTTCTTAGCTCAATGCATCAAATCCCTCCAGAAAGAACTTGATCAAACAAAGAAAGAATTGGAAGAAACAAAGGCAAGAGAGTTGAAGTTGCTTCAACGACGTGATATTCCAGAGACAAACGAAGACATCAAGTTCATTGCGAACGGAACCAATGTGGAAATCAAAACACAAAATGATGATGATATTGATGATGAGGAAACAATTCAAAAAAGAAGATATGTGAAATTTGCTAGCCCTCATGTATTAGCTCAAGTTATTCCTAATAAGGATGAGTTACTTGTGAGACCTAATTCAGTTAAGAAAGGTAAGAAGAAGACAATGATGCCTTTGATAGGATGGCTTTTCTCAAAAAGTAAGAAGGGAAGTTATGAAGTTGACTCTCCAAAAGCTTAA
Protein sequence

>Msa0799950

MDRGENGTLIMGRAEIDTGAPFKSVKEAVLLFGERVLVGEIYANKLKEMQNEAREAGHAQSKSGALAAELEETKQKLEGSKEEANFLAQCIKSLQKELDQTKKELEETKARELKLLQRRDIPETNEDIKFIANGTNVEIKTQNDDDIDDEETIQKRRYVKFASPHVLAQVIPNKDELLVRPNSVKKGKKKTMMPLIGWLFSKSKKGSYEVDSPKA*