AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0275000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0275000 MtrunA17_Chr2g0279231 58.065 248 78 1 1 222 656 903 1.33e-84 279
Msa0275000 MtrunA17_Chr7g0262231 56.031 257 86 4 192 431 140 386 1.64e-73 253
Msa0275000 MtrunA17_Chr7g0262241 58.952 229 75 5 162 382 110 327 2.94e-70 243
Msa0275000 MtrunA17_Chr7g0261951 58.079 229 77 5 162 382 110 327 6.74e-70 242
Msa0275000 MtrunA17_Chr7g0261981 69.399 183 39 3 207 382 155 327 7.64e-70 242
Msa0275000 MtrunA17_Chr7g0261971 83.459 133 22 0 250 382 191 323 9.14e-67 233
Msa0275000 MtrunA17_Chr8g0363051 49.187 246 99 1 1 220 508 753 2.31e-65 225
Msa0275000 MtrunA17_Chr7g0262261 51.931 233 87 4 167 382 74 298 3.53e-63 223
Msa0275000 MtrunA17_Chr7g0262221 78.947 133 10 1 250 382 196 310 5.21e-59 210
Msa0275000 MtrunA17_Chr4g0003981 71.429 140 40 0 243 382 199 338 7.67e-59 210
Msa0275000 MtrunA17_Chr4g0004021 71.429 140 40 0 243 382 197 336 8.24e-59 209
Msa0275000 MtrunA17_Chr8g0337151 43.548 248 113 3 1 222 135 381 5.05e-58 196
Msa0275000 MtrunA17_Chr2g0332211 70.000 140 42 0 243 382 274 413 6.59e-58 207
Msa0275000 MtrunA17_Chr2g0332221 69.286 140 43 0 243 382 193 332 2.01e-57 206
Msa0275000 MtrunA17_Chr2g0332241 69.286 140 43 0 243 382 193 332 2.03e-57 206
Msa0275000 MtrunA17_Chr4g0003971 68.571 140 44 0 243 382 187 326 3.91e-56 202
Msa0275000 MtrunA17_Chr3g0138261 68.421 133 42 0 250 382 199 331 6.01e-56 201
Msa0275000 MtrunA17_Chr5g0417451 41.057 246 118 3 1 220 18 262 6.56e-55 185
Msa0275000 MtrunA17_Chr5g0395921 45.382 249 106 5 1 220 1103 1350 2.12e-54 197
Msa0275000 MtrunA17_Chr1g0213431 43.478 253 113 3 1 224 1224 1475 4.86e-53 193
Msa0275000 MtrunA17_Chr3g0122161 43.478 253 113 3 1 224 1235 1486 5.31e-53 192
Msa0275000 MtrunA17_Chr1g0148841 69.291 127 39 0 256 382 205 331 1.52e-52 191
Msa0275000 MtrunA17_Chr3g0117621 44.841 252 107 4 1 222 1248 1497 2.70e-52 191
Msa0275000 MtrunA17_Chr7g0271061 44.841 252 107 4 1 222 1248 1497 3.20e-52 191
Msa0275000 MtrunA17_Chr1g0171351 63.571 140 51 0 243 382 202 341 3.29e-52 190
Msa0275000 MtrunA17_Chr0c20g0493841 61.871 139 53 0 244 382 195 333 1.69e-51 188
Msa0275000 MtrunA17_Chr7g0262251 47.619 231 78 6 162 382 125 322 2.25e-51 188
Msa0275000 MtrunA17_Chr5g0447551 41.870 246 116 2 1 220 243 487 6.33e-51 185
Msa0275000 MtrunA17_Chr2g0320651 42.745 255 114 4 1 224 1235 1488 9.13e-51 186
Msa0275000 MtrunA17_Chr1g0198291 66.923 130 43 0 253 382 225 354 1.31e-50 186
Msa0275000 MtrunA17_Chr6g0480691 40.244 246 121 2 10 229 251 496 2.32e-50 179
Msa0275000 MtrunA17_Chr8g0340651 59.398 133 54 0 250 382 211 343 3.47e-49 181
Msa0275000 MtrunA17_Chr2g0331081 58.647 133 55 0 250 382 212 344 1.83e-48 179
Msa0275000 MtrunA17_Chr4g0062871 59.055 127 52 0 256 382 189 315 1.70e-47 176
Msa0275000 MtrunA17_Chr1g0148811 62.016 129 49 0 254 382 191 319 1.98e-47 176
Msa0275000 MtrunA17_Chr7g0265961 43.668 229 110 5 162 382 130 347 8.48e-47 174
Msa0275000 MtrunA17_Chr6g0468801 39.683 252 121 2 1 226 529 775 1.03e-46 173
Msa0275000 MtrunA17_Chr7g0265981 57.857 140 59 0 243 382 210 349 1.33e-46 174
Msa0275000 MtrunA17_Chr7g0265971 58.647 133 55 0 250 382 211 343 7.00e-46 172
Msa0275000 MtrunA17_Chr7g0266001 58.273 139 58 0 244 382 90 228 7.99e-46 169
Msa0275000 MtrunA17_Chr1g0213471 41.365 249 116 3 1 220 148 395 8.40e-46 164
Msa0275000 MtrunA17_Chr4g0069211 60.484 124 49 0 250 373 200 323 3.65e-45 169
Msa0275000 MtrunA17_Chr3g0085391 40.088 227 125 3 1 218 261 485 1.86e-43 160
Msa0275000 MtrunA17_Chr1g0208691 37.903 248 128 2 1 222 1044 1291 6.04e-42 160
Msa0275000 MtrunA17_Chr2g0302511 37.398 246 128 2 4 223 363 608 7.36e-42 157
Msa0275000 MtrunA17_Chr3g0122931 37.344 241 125 2 9 223 777 1017 2.84e-41 158
Msa0275000 MtrunA17_Chr6g0474211 36.735 245 129 2 5 223 522 766 4.19e-41 157
Msa0275000 MtrunA17_Chr2g0326511 37.004 227 117 2 23 223 157 383 1.48e-40 150
Msa0275000 MtrunA17_Chr1g0153361 36.864 236 122 3 1 210 1458 1692 1.91e-40 155
Msa0275000 MtrunA17_Chr1g0202521 43.636 165 93 0 58 222 26 190 4.27e-40 143
Msa0275000 MtrunA17_Chr7g0219281 37.004 227 117 2 23 223 265 491 6.17e-40 150
Msa0275000 MtrunA17_Chr7g0248591 35.135 222 118 2 27 222 17 238 4.41e-39 142
Msa0275000 MtrunA17_Chr1g0168011 44.134 179 95 1 48 226 16 189 1.78e-38 139
Msa0275000 MtrunA17_Chr3g0101191 39.024 246 123 6 1 220 1068 1312 1.28e-37 147
Msa0275000 MtrunA17_Chr3g0104621 53.125 128 59 1 255 382 94 220 2.59e-37 146
Msa0275000 MtrunA17_Chr4g0056611 37.398 246 128 2 4 223 712 957 4.65e-37 145
Msa0275000 MtrunA17_Chr4g0005281 42.581 155 89 0 66 220 15 169 1.11e-36 133
Msa0275000 MtrunA17_Chr1g0208701 36.889 225 116 2 1 199 1044 1268 1.98e-36 144
Msa0275000 MtrunA17_Chr7g0235811 32.917 240 135 2 10 223 363 602 5.48e-36 140
Msa0275000 MtrunA17_Chr1g0182471 36.000 175 112 0 48 222 16 190 7.42e-36 131
Msa0275000 MtrunA17_Chr8g0390891 34.836 244 130 2 9 223 732 975 1.23e-35 141
Msa0275000 MtrunA17_Chr5g0429871 50.000 128 63 1 256 382 17 144 3.99e-35 140
Msa0275000 MtrunA17_Chr3g0144121 34.426 244 131 2 9 223 1101 1344 8.31e-35 139
Msa0275000 MtrunA17_Chr3g0107241 33.010 206 112 2 1 180 53 258 6.05e-33 125
Msa0275000 MtrunA17_Chr1g0162991 30.364 247 141 3 1 221 168 409 3.54e-32 127
Msa0275000 MtrunA17_Chr2g0319451 42.593 162 67 2 3 138 469 630 1.59e-29 122
Msa0275000 MtrunA17_Chr8g0351191 33.197 244 130 6 1 212 530 772 9.06e-27 114
Msa0275000 MtrunA17_Chr7g0229241 30.078 256 142 7 1 220 1030 1284 5.14e-25 109
Msa0275000 MtrunA17_Chr7g0214321 37.975 158 95 1 63 220 34 188 7.75e-25 101
Msa0275000 MtrunA17_Chr6g0478321 39.024 164 74 3 1 138 91 254 1.13e-24 102
Msa0275000 MtrunA17_Chr7g0224631 33.742 163 82 2 1 137 1 163 5.62e-21 90.1
Msa0275000 MtrunA17_Chr8g0390451 53.125 64 30 0 292 355 23 86 5.81e-18 79.0
Msa0275000 MtrunA17_Chr5g0416531 34.532 139 65 2 4 116 177 315 2.30e-14 73.9
Msa0275000 MtrunA17_Chr6g0467561 38.202 89 55 0 121 209 1 89 2.62e-14 68.6
Msa0275000 MtrunA17_Chr8g0346291 43.750 64 36 0 147 210 12 75 3.80e-13 65.1
Msa0275000 MtrunA17_Chr1g0172711 38.889 72 44 0 151 222 3 74 4.74e-13 64.3
Msa0275000 MtrunA17_Chr7g0262321 53.846 65 12 1 318 382 4 50 1.21e-12 70.5
Msa0275000 MtrunA17_Chr8g0376361 32.323 99 67 0 124 222 2 100 7.16e-12 62.0
Msa0275000 MtrunA17_Chr7g0262331 32.609 138 68 6 162 289 86 208 2.48e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0275000 AT1G15520.2 49.333 225 103 5 162 382 117 334 3.25e-58 208
Msa0275000 AT1G15520.1 49.333 225 103 5 162 382 117 334 3.86e-58 208
Msa0275000 AT3G16340.1 63.158 133 49 0 250 382 195 327 3.95e-51 187
Msa0275000 AT3G16340.2 63.158 133 49 0 250 382 195 327 3.98e-51 187
Msa0275000 AT1G59870.1 59.286 140 57 0 243 382 212 351 2.01e-49 182
Msa0275000 AT1G15210.1 62.406 133 50 0 250 382 217 349 2.17e-49 182
Msa0275000 AT3G30842.1 61.429 140 54 0 243 382 187 326 3.15e-49 182
Msa0275000 AT2G37280.4 57.931 145 57 1 242 382 17 161 1.01e-48 181
Msa0275000 AT2G37280.2 57.931 145 57 1 242 382 175 319 1.55e-48 180
Msa0275000 AT2G37280.1 57.931 145 57 1 242 382 175 319 1.75e-48 180
Msa0275000 AT2G36380.1 58.273 139 58 0 244 382 215 353 1.19e-47 177
Msa0275000 AT3G53480.1 56.835 139 60 0 244 382 216 354 6.97e-47 175
Msa0275000 AT2G37280.3 41.841 239 105 6 162 382 126 348 7.93e-47 175
Msa0275000 AT1G66950.1 57.143 140 60 0 243 382 216 355 4.91e-46 172
Msa0275000 AT2G26910.1 57.480 127 54 0 256 382 189 315 1.06e-45 172
Msa0275000 AT4G15236.1 56.552 145 59 1 242 382 174 318 2.49e-44 167
Msa0275000 AT4G15215.8 54.483 145 62 1 242 382 171 315 1.07e-43 166
Msa0275000 AT4G15215.10 54.483 145 62 1 242 382 171 315 1.07e-43 166
Msa0275000 AT4G15215.6 54.483 145 62 1 242 382 171 315 1.07e-43 166
Msa0275000 AT4G15215.7 54.483 145 62 1 242 382 171 315 1.07e-43 166
Msa0275000 AT4G15215.1 54.483 145 62 1 242 382 174 318 1.19e-43 166
Msa0275000 AT4G15215.11 54.483 145 62 1 242 382 174 318 1.21e-43 166
Msa0275000 AT4G15215.9 54.483 145 62 1 242 382 171 315 1.27e-43 166
Msa0275000 AT4G15215.4 54.483 145 62 1 242 382 171 315 1.27e-43 166
Msa0275000 AT4G15215.5 54.483 145 62 1 242 382 171 315 1.27e-43 166
Msa0275000 AT4G15215.3 54.483 145 62 1 242 382 171 315 1.27e-43 166
Msa0275000 AT4G15215.2 54.483 145 62 1 242 382 171 315 1.27e-43 166
Msa0275000 AT4G15233.3 56.835 139 60 0 244 382 120 258 1.68e-43 165
Msa0275000 AT4G15233.6 56.835 139 60 0 244 382 120 258 1.68e-43 165
Msa0275000 AT4G15233.8 56.835 139 60 0 244 382 173 311 2.02e-43 165
Msa0275000 AT4G15233.1 56.835 139 60 0 244 382 182 320 2.03e-43 165
Msa0275000 AT4G15233.2 56.835 139 60 0 244 382 182 320 2.12e-43 165
Msa0275000 AT4G15230.4 53.103 145 64 1 242 382 98 242 7.23e-42 160
Msa0275000 AT4G15230.2 53.103 145 64 1 242 382 177 321 1.08e-41 160
Msa0275000 AT4G15230.3 53.103 145 64 1 242 382 177 321 1.11e-41 160
Msa0275000 AT4G15230.1 53.103 145 64 1 242 382 177 321 1.11e-41 160
Msa0275000 AT2G29940.1 46.259 147 78 1 243 388 201 347 2.14e-35 141
Msa0275000 AT4G15233.5 50.360 139 51 1 244 382 120 240 7.50e-34 136
Msa0275000 AT4G15233.4 50.360 139 51 1 244 382 120 240 7.50e-34 136
Msa0275000 AT4G15233.7 50.360 139 51 1 244 382 182 302 9.30e-34 136
Msa0275000 AT4G23160.3 35.533 197 101 2 10 180 357 553 3.15e-29 122
Msa0275000 AT4G23160.2 35.533 197 101 2 10 180 357 553 3.15e-29 122
Msa0275000 ATMG00810.1 38.562 153 65 2 10 133 76 228 4.77e-25 103

Find 101 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTATCAAATTTGCTTTC+TGG 0.139989 2_3:+6876846 None:intergenic
TTAAAAGACTTCCAAGAAAT+TGG 0.177175 2_3:+6879642 None:intergenic
TGGCTTCATGATCAGGTTTC+TGG 0.177431 2_3:-6877549 Msa0275000:intron
TACATAAGCGGCAGTTCTTT+GGG 0.271249 2_3:+6877485 None:intergenic
CTACATAAGCGGCAGTTCTT+TGG 0.311636 2_3:+6877484 None:intergenic
TCTGGAAAGGTGACTTATAA+TGG 0.312868 2_3:-6877531 Msa0275000:CDS
CAAGATCTTCGTTTCAAGAT+AGG 0.320720 2_3:-6879300 Msa0275000:CDS
GCTGCAGAAGCTTGCTGTTT+CGG 0.347608 2_3:-6876349 Msa0275000:CDS
TCTGACAAAATGAATATCTA+TGG 0.349640 2_3:+6879419 None:intergenic
AGTGAGCTTGATTGGTGTTT+GGG 0.355157 2_3:-6876164 Msa0275000:CDS
TTCCTTAACTCCTTCTTCCT+CGG 0.362266 2_3:+6878294 None:intergenic
ACGGAATACAGAAGCGTCAT+AGG 0.364813 2_3:-6879931 Msa0275000:CDS
GACAAAAGAAACGTGTTAAA+AGG 0.365362 2_3:-6876647 Msa0275000:CDS
TAGTGAGCTTGATTGGTGTT+TGG 0.365654 2_3:-6876165 Msa0275000:CDS
ATGGTGGTAACCCAATTTCT+TGG 0.375300 2_3:-6879653 Msa0275000:CDS
CAATGTGCTTCATGCGACTA+TGG 0.388656 2_3:+6879442 None:intergenic
TAAAAGACTTCCAAGAAATT+GGG 0.388718 2_3:+6879643 None:intergenic
CAAGGAGTTGGGCTGCGTTA+TGG 0.390090 2_3:-6877396 Msa0275000:intron
GAGGGAAAAGAGTACAAGAT+AGG 0.397888 2_3:+6876126 None:intergenic
GCGCCGTCATATTTAGTAAG+AGG 0.407850 2_3:+6879970 None:intergenic
ACAGTAGATGGTAGGAATAG+TGG 0.429450 2_3:+6879506 None:intergenic
TGCATTCAGTGATGCCGATT+GGG 0.437973 2_3:-6879724 Msa0275000:CDS
ACCGAGATTGTCACAGTAGA+TGG 0.440818 2_3:+6879494 None:intergenic
TGATAACATATTATGTCCTA+AGG 0.441326 2_3:-6876832 Msa0275000:CDS
TCCTTAACTCCTTCTTCCTC+GGG 0.442594 2_3:+6878295 None:intergenic
AGTTAAGGAAAGAAGAATGA+AGG 0.448467 2_3:-6878281 Msa0275000:intron
CCGCATCCGCAGAAGTTCTC+TGG 0.449993 2_3:-6879566 Msa0275000:CDS
ATCTGCTAGCTGATCTTTAG+TGG 0.461586 2_3:+6879356 None:intergenic
ATCTCGATTTCCAGCCCAAT+CGG 0.463643 2_3:+6879710 None:intergenic
ATGCATTCAGTGATGCCGAT+TGG 0.463706 2_3:-6879725 Msa0275000:CDS
CAGCTAGAGTCCAAGGAGTT+GGG 0.466289 2_3:-6877407 Msa0275000:CDS
TTTACAGTGTAGGCTATGTC+AGG 0.467579 2_3:+6879880 None:intergenic
CCAGAGAACTTCTGCGGATG+CGG 0.477893 2_3:+6879566 None:intergenic
TTCAGTGATGCCGATTGGGC+TGG 0.481066 2_3:-6879720 Msa0275000:CDS
TTCATGTACACATCAATGTC+TGG 0.484699 2_3:+6876992 None:intergenic
ACATGTGCTGATACTGTTGT+AGG 0.486923 2_3:-6876699 Msa0275000:CDS
CATAACGCAGCCCAACTCCT+TGG 0.494891 2_3:+6877397 None:intergenic
TCAGCTAGAGTCCAAGGAGT+TGG 0.497485 2_3:-6877408 Msa0275000:CDS
ACCAGCTGAAAACAACAAAC+AGG 0.504495 2_3:+6876390 None:intergenic
GCAATGTTAAGAGGTATCTC+TGG 0.504733 2_3:-6876672 Msa0275000:CDS
ACCCGAGGAAGAAGGAGTTA+AGG 0.507227 2_3:-6878296 Msa0275000:CDS
AAATGACCAAACCTAGATGA+AGG 0.508478 2_3:+6878349 None:intergenic
AAATATGACGGCGCAAGTGC+AGG 0.515252 2_3:-6879961 Msa0275000:CDS
GTAGGGAATGCAATGTTAAG+AGG 0.517676 2_3:-6876681 Msa0275000:CDS
CGGAATACAGAAGCGTCATA+GGG 0.518114 2_3:-6879930 Msa0275000:CDS
TACACATCAATGTCTGGATC+GGG 0.518429 2_3:+6876998 None:intergenic
CAGTAGATGGTAGGAATAGT+GGG 0.520173 2_3:+6879507 None:intergenic
AGGGAAAAGAGTACAAGATA+GGG 0.527254 2_3:+6876127 None:intergenic
ACGTTGCCTAGACAGAGGTT+TGG 0.540222 2_3:+6879326 None:intergenic
TGCACTAAACCTGCCGAGGA+GGG 0.543502 2_3:+6876108 None:intergenic
ACCATCTACTGTGACAATCT+CGG 0.543864 2_3:-6879495 Msa0275000:CDS
CGCAAGTGCAGGAGATAGTA+CGG 0.544137 2_3:-6879950 Msa0275000:CDS
GTACACATCAATGTCTGGAT+CGG 0.545119 2_3:+6876997 None:intergenic
GACTCTAGCTGAGAAGGCCA+AGG 0.545687 2_3:+6877419 None:intergenic
AGGATGTAGACATCGGTGAA+TGG 0.546908 2_3:+6879995 None:intergenic
GGCTATGTCAGGCCTTGTCA+TGG 0.549819 2_3:+6879891 None:intergenic
TCATGATCAGGTTTCTGGAA+AGG 0.552511 2_3:-6877544 Msa0275000:intron
TTGTTCATCTCACTAATAGT+CGG 0.553980 2_3:-6878328 Msa0275000:CDS
GCCTTCTCAGCTAGAGTCCA+AGG 0.554156 2_3:-6877414 Msa0275000:CDS
TTCATGCGACTATGGAAGAC+GGG 0.555299 2_3:+6879450 None:intergenic
ACATAAGCGGCAGTTCTTTG+GGG 0.559842 2_3:+6877486 None:intergenic
TGTCTATTACCCGAGGAAGA+AGG 0.561241 2_3:-6878304 Msa0275000:CDS
TCCTTGGACTCTAGCTGAGA+AGG 0.569485 2_3:+6877413 None:intergenic
GCTGTCTTATATCAGGAAGT+AGG 0.571081 2_3:-6876196 Msa0275000:intron
AATGACTGTTAGAGAAACCT+TGG 0.574134 2_3:-6877436 Msa0275000:CDS
AGCTCTGTATTCAGCTTCAG+TGG 0.577792 2_3:+6879596 None:intergenic
CATAAGCGGCAGTTCTTTGG+GGG 0.582408 2_3:+6877487 None:intergenic
AAGCCACCATGTTTCATGCA+TGG 0.585367 2_3:-6879783 Msa0275000:CDS
GCCTCACCAAACCTCTGTCT+AGG 0.588512 2_3:-6879332 Msa0275000:CDS
GTTGCTGGTGCAACACAGAA+AGG 0.591078 2_3:+6876326 None:intergenic
GTCTTATATCAGGAAGTAGG+AGG 0.591413 2_3:-6876193 Msa0275000:intron
GATAACATATTATGTCCTAA+GGG 0.591649 2_3:-6876831 Msa0275000:intron
GCCTGTGGTGCTATCAGAGG+TGG 0.593297 2_3:-6876430 Msa0275000:CDS
TTGGCCTGTGGTGCTATCAG+AGG 0.594131 2_3:-6876433 Msa0275000:CDS
CTTCATGCGACTATGGAAGA+CGG 0.595829 2_3:+6879449 None:intergenic
AAATGTAACATGTGCAGAGG+TGG 0.601038 2_3:+6879677 None:intergenic
ACCACCTCTGATAGCACCAC+AGG 0.601251 2_3:+6876429 None:intergenic
ATGTTAAGAGGTATCTCTGG+TGG 0.602587 2_3:-6876669 Msa0275000:CDS
CATGTGCTGATACTGTTGTA+GGG 0.607154 2_3:-6876698 Msa0275000:CDS
AATGACCAAACCTAGATGAA+GGG 0.610648 2_3:+6878350 None:intergenic
TGCAAGCTTATTTACAGTGT+AGG 0.616595 2_3:+6879870 None:intergenic
AGATTGTCACAGTAGATGGT+AGG 0.618243 2_3:+6879498 None:intergenic
AGACATTGATGTGTACATGA+AGG 0.618692 2_3:-6876990 Msa0275000:intron
GCCTAGACAGAGGTTTGGTG+AGG 0.618837 2_3:+6879331 None:intergenic
GTTCAGGCTGTAGCAACTGA+AGG 0.619180 2_3:-6876869 Msa0275000:intron
GGGATTGACAGTGAGATAAG+TGG 0.622015 2_3:+6879470 None:intergenic
ATGCACTAAACCTGCCGAGG+AGG 0.622458 2_3:+6876107 None:intergenic
TTCAAGATAGGCGTATCTGA+CGG 0.632264 2_3:-6879288 Msa0275000:intron
AAAAGAAACGTGTTAAAAGG+TGG 0.635022 2_3:-6876644 Msa0275000:CDS
TCTCCTCTTACTAAATATGA+CGG 0.640931 2_3:-6879973 Msa0275000:CDS
AGAGGAGAGGATGTAGACAT+CGG 0.642405 2_3:+6879988 None:intergenic
GTCATATTTAGTAAGAGGAG+AGG 0.642682 2_3:+6879975 None:intergenic
TGATGACGTTGCCTAGACAG+AGG 0.644875 2_3:+6879321 None:intergenic
TACAATATTTGTCCATGACA+AGG 0.647455 2_3:-6879903 Msa0275000:CDS
ATAAAATGTAACATGTGCAG+AGG 0.665512 2_3:+6879674 None:intergenic
AACATGCACTAAACCTGCCG+AGG 0.667373 2_3:+6876104 None:intergenic
AGTCGGTTGTCTATTACCCG+AGG 0.676694 2_3:-6878311 Msa0275000:CDS
TGAAGTCCATGCATGAAACA+TGG 0.677424 2_3:+6879777 None:intergenic
GGAATACAGAAGCGTCATAG+GGG 0.683487 2_3:-6879929 Msa0275000:CDS
TGACAACCAGAGAACTTCTG+CGG 0.689022 2_3:+6879560 None:intergenic
AGTCCATGCATGAAACATGG+TGG 0.788404 2_3:+6879780 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAAATAAAATAGTATA+AGG + chr2_3:6877101-6877120 None:intergenic 10.0%
!!! ATTTGTTTTTTTTAATTACA+GGG + chr2_3:6877553-6877572 None:intergenic 10.0%
!!! AATTTGTTTTTTTTAATTAC+AGG + chr2_3:6877554-6877573 None:intergenic 10.0%
!!! TTTGTTTTTTTTAATTACAG+GGG + chr2_3:6877552-6877571 None:intergenic 15.0%
!!! TAGGTTCTAATTATAATAAA+AGG - chr2_3:6877944-6877963 Msa0275000:intron 15.0%
!!! AGGTTCTAATTATAATAAAA+GGG - chr2_3:6877945-6877964 Msa0275000:intron 15.0%
!! TTAAAATAAAGGATATCTTT+GGG + chr2_3:6879028-6879047 None:intergenic 15.0%
!!! TTTAAAATAAAGGATATCTT+TGG + chr2_3:6879029-6879048 None:intergenic 15.0%
!! ATGTCAGAAATAAAAAGATT+TGG - chr2_3:6876735-6876754 Msa0275000:intron 20.0%
!! TGTCAGAAATAAAAAGATTT+GGG - chr2_3:6876736-6876755 Msa0275000:intron 20.0%
!! TAAAATAGTATAAGGAAGAA+TGG + chr2_3:6877093-6877112 None:intergenic 20.0%
!! TTTGAATTGGTTAGTAATTT+GGG + chr2_3:6877231-6877250 None:intergenic 20.0%
!!! TTTTGAATTGGTTAGTAATT+TGG + chr2_3:6877232-6877251 None:intergenic 20.0%
!!! GGAATTTTTTGAATTATTGA+AGG + chr2_3:6877351-6877370 None:intergenic 20.0%
!!! TTGTTTTTTTTAATTACAGG+GGG + chr2_3:6877551-6877570 None:intergenic 20.0%
!! TAATTATAATAAAAGGGAAC+TGG - chr2_3:6877951-6877970 Msa0275000:intron 20.0%
!! TAAGAACATAACAACAAAAA+GGG + chr2_3:6878072-6878091 None:intergenic 20.0%
!! ATGTGTGAATTTGATAAATT+AGG - chr2_3:6878093-6878112 Msa0275000:intron 20.0%
!! AAATCTTTATGTGAGATTAA+TGG - chr2_3:6878120-6878139 Msa0275000:intron 20.0%
!! AATCTTTATGTGAGATTAAT+GGG - chr2_3:6878121-6878140 Msa0275000:intron 20.0%
!!! TGTATTTATTAGTTTGAACA+AGG - chr2_3:6878280-6878299 Msa0275000:intron 20.0%
!!! AACACAACATATAATTTTCT+TGG - chr2_3:6878342-6878361 Msa0275000:CDS 20.0%
!!! AATAAGTTTGTTAAAACTGA+TGG - chr2_3:6878921-6878940 Msa0275000:intron 20.0%
!!! TAGAGTTATTTTATACTTAG+TGG - chr2_3:6879165-6879184 Msa0275000:intron 20.0%
!!! AGAGTTATTTTATACTTAGT+GGG - chr2_3:6879166-6879185 Msa0275000:intron 20.0%
!! AATGTATAACAAAGAAACAA+AGG + chr2_3:6879388-6879407 None:intergenic 20.0%
!!! TGTTATACATTTTCAGATTT+TGG - chr2_3:6879397-6879416 Msa0275000:CDS 20.0%
!!! GTTATACATTTTCAGATTTT+GGG - chr2_3:6879398-6879417 Msa0275000:CDS 20.0%
! TAAAAGACTTCCAAGAAATT+GGG + chr2_3:6876487-6876506 None:intergenic 25.0%
! TTAAAAGACTTCCAAGAAAT+TGG + chr2_3:6876488-6876507 None:intergenic 25.0%
! TCTGACAAAATGAATATCTA+TGG + chr2_3:6876711-6876730 None:intergenic 25.0%
! ATCTCTTAATTTAAAAGCCT+TGG + chr2_3:6876902-6876921 None:intergenic 25.0%
! ATGTTATTCACAAGGTATAT+TGG + chr2_3:6877062-6877081 None:intergenic 25.0%
!!! TTTTTGCTATGTTATTCACA+AGG + chr2_3:6877070-6877089 None:intergenic 25.0%
! TTGAATTGGTTAGTAATTTG+GGG + chr2_3:6877230-6877249 None:intergenic 25.0%
!! TCACTAATGCAATTTTGAAT+TGG + chr2_3:6877244-6877263 None:intergenic 25.0%
! AATTCAAAATTGCATTAGTG+AGG - chr2_3:6877243-6877262 Msa0275000:intron 25.0%
! ATTCAAAATTGCATTAGTGA+GGG - chr2_3:6877244-6877263 Msa0275000:intron 25.0%
! TTAATCTATCAGAACATTAC+TGG + chr2_3:6877494-6877513 None:intergenic 25.0%
! CTAAAAGGGAAAATCAATTA+GGG + chr2_3:6878021-6878040 None:intergenic 25.0%
! ACTAAAAGGGAAAATCAATT+AGG + chr2_3:6878022-6878041 None:intergenic 25.0%
! GTAAGAACATAACAACAAAA+AGG + chr2_3:6878073-6878092 None:intergenic 25.0%
!!! AGTGACATTTGTATTGATTT+TGG - chr2_3:6878389-6878408 Msa0275000:intron 25.0%
!!! ATCATTTTGATCTACATAAG+CGG + chr2_3:6878657-6878676 None:intergenic 25.0%
!!! CATGAGCAACTTTAAAATAA+AGG + chr2_3:6879039-6879058 None:intergenic 25.0%
!! ATGTTATCAAATTTGCTTTC+TGG + chr2_3:6879284-6879303 None:intergenic 25.0%
! TGATAACATATTATGTCCTA+AGG - chr2_3:6879295-6879314 Msa0275000:CDS 25.0%
! GATAACATATTATGTCCTAA+GGG - chr2_3:6879296-6879315 Msa0275000:CDS 25.0%
! GTATATATTACTTTACCCTT+AGG + chr2_3:6879314-6879333 None:intergenic 25.0%
!!! AGATTTTTTTCCATGTTGTT+AGG - chr2_3:6879871-6879890 Msa0275000:intron 25.0%
TCTCCTCTTACTAAATATGA+CGG - chr2_3:6876154-6876173 Msa0275000:CDS 30.0%
TACAATATTTGTCCATGACA+AGG - chr2_3:6876224-6876243 Msa0275000:intron 30.0%
! ATATCGAAGAAGTCTTTTCA+AGG + chr2_3:6876320-6876339 None:intergenic 30.0%
ATAAAATGTAACATGTGCAG+AGG + chr2_3:6876456-6876475 None:intergenic 30.0%
! TCTGCACATGTTACATTTTA+TGG - chr2_3:6876455-6876474 Msa0275000:CDS 30.0%
! ACATTTGAGACAATGACAAT+TGG + chr2_3:6877137-6877156 None:intergenic 30.0%
!!! GGGTTTTTTTATATTACCGA+GGG + chr2_3:6877303-6877322 None:intergenic 30.0%
!!! AGGGTTTTTTTATATTACCG+AGG + chr2_3:6877304-6877323 None:intergenic 30.0%
AAAACCCTCAATAACATTAC+TGG - chr2_3:6877316-6877335 Msa0275000:intron 30.0%
TCAAAAAATTCCGTTACTGA+CGG - chr2_3:6877359-6877378 Msa0275000:intron 30.0%
TTGGTCATTAACAATACTGA+CGG + chr2_3:6877392-6877411 None:intergenic 30.0%
TGTCATTGCATCATCATTAT+TGG + chr2_3:6877445-6877464 None:intergenic 30.0%
TTGTTCATCTCACTAATAGT+CGG - chr2_3:6877799-6877818 Msa0275000:intron 30.0%
AGTTAAGGAAAGAAGAATGA+AGG - chr2_3:6877846-6877865 Msa0275000:intron 30.0%
!! TGAGGTGAGTTTCTAAAATT+AGG - chr2_3:6877925-6877944 Msa0275000:intron 30.0%
TAGCAACACAACAACTAAAA+GGG + chr2_3:6878035-6878054 None:intergenic 30.0%
! AGATTAATGGGTATTGTAAG+TGG - chr2_3:6878133-6878152 Msa0275000:intron 30.0%
GTAAGTGGTATGAGAAAATT+AGG - chr2_3:6878148-6878167 Msa0275000:intron 30.0%
!!! ATTTGTATTGATTTTGGCAC+TGG - chr2_3:6878395-6878414 Msa0275000:intron 30.0%
TCAATTTGAACAATATGCTC+AGG + chr2_3:6878470-6878489 None:intergenic 30.0%
! GGTTACCTTTTTAGACAAAA+CGG + chr2_3:6878526-6878545 None:intergenic 30.0%
CAGAAACATTATTGAAGACA+CGG + chr2_3:6878547-6878566 None:intergenic 30.0%
!! CAATAATGTTTCTGGTAAGA+TGG - chr2_3:6878553-6878572 Msa0275000:intron 30.0%
! TTATTTTCATAAGCTCTCCT+GGG + chr2_3:6878906-6878925 None:intergenic 30.0%
CTGAACATCATGAATCAAAA+GGG + chr2_3:6879244-6879263 None:intergenic 30.0%
GACAAAAGAAACGTGTTAAA+AGG - chr2_3:6879480-6879499 Msa0275000:CDS 30.0%
AAAAGAAACGTGTTAAAAGG+TGG - chr2_3:6879483-6879502 Msa0275000:CDS 30.0%
!!! ATGCTTGTCTTTTTTACGAA+TGG - chr2_3:6879558-6879577 Msa0275000:CDS 30.0%
!!! TCTTTTTTACGAATGGTGTT+GGG - chr2_3:6879565-6879584 Msa0275000:CDS 30.0%
! AAAACAAGGTACCAAAAACA+AGG + chr2_3:6879829-6879848 None:intergenic 30.0%
!!! GTTTTTGGTACCTTGTTTTT+TGG - chr2_3:6879830-6879849 Msa0275000:intron 30.0%
GTCATATTTAGTAAGAGGAG+AGG + chr2_3:6876155-6876174 None:intergenic 35.0%
TGCAAGCTTATTTACAGTGT+AGG + chr2_3:6876260-6876279 None:intergenic 35.0%
! GCACATGTTACATTTTATGG+TGG - chr2_3:6876458-6876477 Msa0275000:CDS 35.0%
CAAGATCTTCGTTTCAAGAT+AGG - chr2_3:6876827-6876846 Msa0275000:intron 35.0%
ATAATTGCTTCCTACAGCTA+TGG + chr2_3:6877008-6877027 None:intergenic 35.0%
AGCTGTAGGAAGCAATTATT+AGG - chr2_3:6877009-6877028 Msa0275000:CDS 35.0%
TTAGACCGTCAGTAATTACT+GGG + chr2_3:6877279-6877298 None:intergenic 35.0%
TTTAGACCGTCAGTAATTAC+TGG + chr2_3:6877280-6877299 None:intergenic 35.0%
AAAAATCCGCCACTAATCTA+AGG + chr2_3:6877419-6877438 None:intergenic 35.0%
CAATGACATTGAATTACCGA+CGG - chr2_3:6877457-6877476 Msa0275000:CDS 35.0%
! AATTACCGACGGACTTTAAT+CGG - chr2_3:6877468-6877487 Msa0275000:CDS 35.0%
! TCCCTTCATTTGATTTCAGA+AGG - chr2_3:6877668-6877687 Msa0275000:intron 35.0%
!! CCCTTCTGAAATCAAATGAA+GGG + chr2_3:6877672-6877691 None:intergenic 35.0%
! CCCTTCATTTGATTTCAGAA+GGG - chr2_3:6877669-6877688 Msa0275000:intron 35.0%
! CCTTCATTTGATTTCAGAAG+GGG - chr2_3:6877670-6877689 Msa0275000:intron 35.0%
CGAACAGCAAACAAGATTAA+GGG + chr2_3:6877720-6877739 None:intergenic 35.0%
TCGAACAGCAAACAAGATTA+AGG + chr2_3:6877721-6877740 None:intergenic 35.0%
AATGACCAAACCTAGATGAA+GGG + chr2_3:6877780-6877799 None:intergenic 35.0%
AAATGACCAAACCTAGATGA+AGG + chr2_3:6877781-6877800 None:intergenic 35.0%
AGGAAAGAAGAATGAAGGTT+TGG - chr2_3:6877851-6877870 Msa0275000:intron 35.0%
! AAGAATGAAGGTTTGGAACT+TGG - chr2_3:6877858-6877877 Msa0275000:intron 35.0%
!! AAGATTTTGATGAAGTGCGT+GGG + chr2_3:6877888-6877907 None:intergenic 35.0%
GCACTTCATCAAAATCTTGA+GGG - chr2_3:6877890-6877909 Msa0275000:intron 35.0%
TGAGGGATTTCTACTAATTG+AGG - chr2_3:6877907-6877926 Msa0275000:intron 35.0%
GTAGCAACACAACAACTAAA+AGG + chr2_3:6878036-6878055 None:intergenic 35.0%
TTATATAGACCCACTTGAGT+TGG - chr2_3:6878308-6878327 Msa0275000:CDS 35.0%
! ACCTTTTTAGACAAAACGGT+GGG + chr2_3:6878522-6878541 None:intergenic 35.0%
! TACCTTTTTAGACAAAACGG+TGG + chr2_3:6878523-6878542 None:intergenic 35.0%
CGTGTCTTCAATAATGTTTC+TGG - chr2_3:6878545-6878564 Msa0275000:intron 35.0%
TCTGGAAAGGTGACTTATAA+TGG - chr2_3:6878596-6878615 Msa0275000:intron 35.0%
AATGACTGTTAGAGAAACCT+TGG - chr2_3:6878691-6878710 Msa0275000:intron 35.0%
!! CTTATTTTCATAAGCTCTCC+TGG + chr2_3:6878907-6878926 None:intergenic 35.0%
!!! AGACAGTTTTAGAGAGCATA+TGG + chr2_3:6878965-6878984 None:intergenic 35.0%
! ATTTGCATGTTTTTCTCGTC+TGG + chr2_3:6879103-6879122 None:intergenic 35.0%
TTCATGTACACATCAATGTC+TGG + chr2_3:6879138-6879157 None:intergenic 35.0%
AGACATTGATGTGTACATGA+AGG - chr2_3:6879137-6879156 Msa0275000:intron 35.0%
CCTGAACATCATGAATCAAA+AGG + chr2_3:6879245-6879264 None:intergenic 35.0%
!! CCTTTTGATTCATGATGTTC+AGG - chr2_3:6879242-6879261 Msa0275000:intron 35.0%
!!! GTCTTTTTTACGAATGGTGT+TGG - chr2_3:6879564-6879583 Msa0275000:CDS 35.0%
! TTTTTCCATGTTGTTAGGTG+TGG - chr2_3:6879876-6879895 Msa0275000:intron 35.0%
!!! GGTTTTTTAGTGAGCTTGAT+TGG - chr2_3:6879955-6879974 Msa0275000:CDS 35.0%
! AGGGAAAAGAGTACAAGATA+GGG + chr2_3:6880003-6880022 None:intergenic 35.0%
TTTACAGTGTAGGCTATGTC+AGG + chr2_3:6876250-6876269 None:intergenic 40.0%
GCTGTAAAGTGTGTAGATGA+TGG + chr2_3:6876298-6876317 None:intergenic 40.0%
TGAAGTCCATGCATGAAACA+TGG + chr2_3:6876353-6876372 None:intergenic 40.0%
AAATGTAACATGTGCAGAGG+TGG + chr2_3:6876453-6876472 None:intergenic 40.0%
ATGGTGGTAACCCAATTTCT+TGG - chr2_3:6876474-6876493 Msa0275000:intron 40.0%
CAGTAGATGGTAGGAATAGT+GGG + chr2_3:6876623-6876642 None:intergenic 40.0%
ACAGTAGATGGTAGGAATAG+TGG + chr2_3:6876624-6876643 None:intergenic 40.0%
AGATTGTCACAGTAGATGGT+AGG + chr2_3:6876632-6876651 None:intergenic 40.0%
ACCATCTACTGTGACAATCT+CGG - chr2_3:6876632-6876651 Msa0275000:CDS 40.0%
ATCTGCTAGCTGATCTTTAG+TGG + chr2_3:6876774-6876793 None:intergenic 40.0%
TTCAAGATAGGCGTATCTGA+CGG - chr2_3:6876839-6876858 Msa0275000:CDS 40.0%
GAAAGTCAAACCATAGCTGT+AGG - chr2_3:6876995-6877014 Msa0275000:CDS 40.0%
GAGACAATGACAATTGGTGT+TGG + chr2_3:6877131-6877150 None:intergenic 40.0%
GGGAATTCTTGTAGTGATAC+AGG + chr2_3:6877210-6877229 None:intergenic 40.0%
TAGACCGTCAGTAATTACTG+GGG + chr2_3:6877278-6877297 None:intergenic 40.0%
ACCCTCAATAACATTACTGG+CGG - chr2_3:6877319-6877338 Msa0275000:intron 40.0%
TCCGCCAGTAATGTTATTGA+GGG + chr2_3:6877323-6877342 None:intergenic 40.0%
TTCCGCCAGTAATGTTATTG+AGG + chr2_3:6877324-6877343 None:intergenic 40.0%
CGGATTTATTCCGTCAGTAA+CGG + chr2_3:6877372-6877391 None:intergenic 40.0%
ACCAATCTGCCTTAGATTAG+TGG - chr2_3:6877407-6877426 Msa0275000:CDS 40.0%
AATCTGCCTTAGATTAGTGG+CGG - chr2_3:6877410-6877429 Msa0275000:CDS 40.0%
!! TTAATTACAGGGGGTACTGA+CGG + chr2_3:6877542-6877561 None:intergenic 40.0%
!! CCCCTTCTGAAATCAAATGA+AGG + chr2_3:6877673-6877692 None:intergenic 40.0%
! TTCTCGTTTTCCCTTCATCT+AGG - chr2_3:6877767-6877786 Msa0275000:intron 40.0%
! GTTTTCCCTTCATCTAGGTT+TGG - chr2_3:6877772-6877791 Msa0275000:intron 40.0%
TTCCTTAACTCCTTCTTCCT+CGG + chr2_3:6877836-6877855 None:intergenic 40.0%
!! CAAGATTTTGATGAAGTGCG+TGG + chr2_3:6877889-6877908 None:intergenic 40.0%
CGCACTTCATCAAAATCTTG+AGG - chr2_3:6877889-6877908 Msa0275000:intron 40.0%
! TTGTTGTGTTGCTACATGTG+TGG - chr2_3:6878041-6878060 Msa0275000:intron 40.0%
GTTCTATCTCCAACTCAAGT+GGG + chr2_3:6878320-6878339 None:intergenic 40.0%
AGTTCTATCTCCAACTCAAG+TGG + chr2_3:6878321-6878340 None:intergenic 40.0%
!! GGCACTGGTATATTTCAGAA+AGG - chr2_3:6878410-6878429 Msa0275000:intron 40.0%
! TCCCACCGTTTTGTCTAAAA+AGG - chr2_3:6878518-6878537 Msa0275000:intron 40.0%
!! ATGTTTCTGGTAAGATGGTG+TGG - chr2_3:6878558-6878577 Msa0275000:intron 40.0%
! TCATGATCAGGTTTCTGGAA+AGG - chr2_3:6878583-6878602 Msa0275000:intron 40.0%
TACATAAGCGGCAGTTCTTT+GGG + chr2_3:6878645-6878664 None:intergenic 40.0%
! GTTGTTTCCATAAGTTACCC+AGG - chr2_3:6878886-6878905 Msa0275000:intron 40.0%
TACACATCAATGTCTGGATC+GGG + chr2_3:6879132-6879151 None:intergenic 40.0%
GTACACATCAATGTCTGGAT+CGG + chr2_3:6879133-6879152 None:intergenic 40.0%
! ACATGTGCTGATACTGTTGT+AGG - chr2_3:6879428-6879447 Msa0275000:CDS 40.0%
! CATGTGCTGATACTGTTGTA+GGG - chr2_3:6879429-6879448 Msa0275000:CDS 40.0%
GTAGGGAATGCAATGTTAAG+AGG - chr2_3:6879446-6879465 Msa0275000:CDS 40.0%
!! GCAATGTTAAGAGGTATCTC+TGG - chr2_3:6879455-6879474 Msa0275000:CDS 40.0%
!! ATGTTAAGAGGTATCTCTGG+TGG - chr2_3:6879458-6879477 Msa0275000:CDS 40.0%
! ATCTAACACGTGTTTTGTCG+TGG - chr2_3:6879507-6879526 Msa0275000:CDS 40.0%
!! TGCGCTAGTTTATGGTGTTT+TGG - chr2_3:6879606-6879625 Msa0275000:CDS 40.0%
!! GCGCTAGTTTATGGTGTTTT+GGG - chr2_3:6879607-6879626 Msa0275000:CDS 40.0%
! TCATCTGTTGTGCTGATAGT+GGG - chr2_3:6879650-6879669 Msa0275000:CDS 40.0%
ACCAGCTGAAAACAACAAAC+AGG + chr2_3:6879740-6879759 None:intergenic 40.0%
!!! ACCAGCAACATCCTTGTTTT+TGG - chr2_3:6879815-6879834 Msa0275000:intron 40.0%
ACCAAAAACAAGGATGTTGC+TGG + chr2_3:6879819-6879838 None:intergenic 40.0%
!!! GTACCTTGTTTTTTGGCTTC+TGG - chr2_3:6879837-6879856 Msa0275000:intron 40.0%
AAAAGCCACACCTAACAACA+TGG + chr2_3:6879884-6879903 None:intergenic 40.0%
GCTGTCTTATATCAGGAAGT+AGG - chr2_3:6879931-6879950 Msa0275000:CDS 40.0%
GTCTTATATCAGGAAGTAGG+AGG - chr2_3:6879934-6879953 Msa0275000:CDS 40.0%
! TAGTGAGCTTGATTGGTGTT+TGG - chr2_3:6879962-6879981 Msa0275000:CDS 40.0%
! AGTGAGCTTGATTGGTGTTT+GGG - chr2_3:6879963-6879982 Msa0275000:CDS 40.0%
! GAGGGAAAAGAGTACAAGAT+AGG + chr2_3:6880004-6880023 None:intergenic 40.0%
AGGATGTAGACATCGGTGAA+TGG + chr2_3:6876135-6876154 None:intergenic 45.0%
AGAGGAGAGGATGTAGACAT+CGG + chr2_3:6876142-6876161 None:intergenic 45.0%
GCGCCGTCATATTTAGTAAG+AGG + chr2_3:6876160-6876179 None:intergenic 45.0%
!! ACGGAATACAGAAGCGTCAT+AGG - chr2_3:6876196-6876215 Msa0275000:intron 45.0%
!! CGGAATACAGAAGCGTCATA+GGG - chr2_3:6876197-6876216 Msa0275000:intron 45.0%
!! GGAATACAGAAGCGTCATAG+GGG - chr2_3:6876198-6876217 Msa0275000:intron 45.0%
AAGCCACCATGTTTCATGCA+TGG - chr2_3:6876344-6876363 Msa0275000:CDS 45.0%
AGTCCATGCATGAAACATGG+TGG + chr2_3:6876350-6876369 None:intergenic 45.0%
ATGCATTCAGTGATGCCGAT+TGG - chr2_3:6876402-6876421 Msa0275000:CDS 45.0%
! TGCATTCAGTGATGCCGATT+GGG - chr2_3:6876403-6876422 Msa0275000:CDS 45.0%
ATCTCGATTTCCAGCCCAAT+CGG + chr2_3:6876420-6876439 None:intergenic 45.0%
AGCTCTGTATTCAGCTTCAG+TGG + chr2_3:6876534-6876553 None:intergenic 45.0%
TGACAACCAGAGAACTTCTG+CGG + chr2_3:6876570-6876589 None:intergenic 45.0%
ACCGAGATTGTCACAGTAGA+TGG + chr2_3:6876636-6876655 None:intergenic 45.0%
GGGATTGACAGTGAGATAAG+TGG + chr2_3:6876660-6876679 None:intergenic 45.0%
TTCATGCGACTATGGAAGAC+GGG + chr2_3:6876680-6876699 None:intergenic 45.0%
CTTCATGCGACTATGGAAGA+CGG + chr2_3:6876681-6876700 None:intergenic 45.0%
CAATGTGCTTCATGCGACTA+TGG + chr2_3:6876688-6876707 None:intergenic 45.0%
GTGTTAAGGTTACAGGACCA+AGG - chr2_3:6876882-6876901 Msa0275000:intron 45.0%
AGACCCCCAGTAATTACTGA+CGG - chr2_3:6877271-6877290 Msa0275000:intron 45.0%
AGACCGTCAGTAATTACTGG+GGG + chr2_3:6877277-6877296 None:intergenic 45.0%
TTACTGACGGTCTAAACCCT+CGG - chr2_3:6877284-6877303 Msa0275000:intron 45.0%
! GCCACTAATCTAAGGCAGAT+TGG + chr2_3:6877411-6877430 None:intergenic 45.0%
!! GGGTACTGACGGAAATAAAG+TGG + chr2_3:6877531-6877550 None:intergenic 45.0%
TGTGTGTTGTCCTCTATGAG+TGG + chr2_3:6877611-6877630 None:intergenic 45.0%
TAGAGGACAACACACAGACT+TGG - chr2_3:6877615-6877634 Msa0275000:intron 45.0%
AATGACTGAGCAAACGAGAG+AGG + chr2_3:6877749-6877768 None:intergenic 45.0%
TGTCTATTACCCGAGGAAGA+AGG - chr2_3:6877823-6877842 Msa0275000:intron 45.0%
TCCTTAACTCCTTCTTCCTC+GGG + chr2_3:6877835-6877854 None:intergenic 45.0%
TGGCTTCATGATCAGGTTTC+TGG - chr2_3:6878578-6878597 Msa0275000:intron 45.0%
ACATAAGCGGCAGTTCTTTG+GGG + chr2_3:6878644-6878663 None:intergenic 45.0%
CTACATAAGCGGCAGTTCTT+TGG + chr2_3:6878646-6878665 None:intergenic 45.0%
AAGCTCTCCTGGGTAACTTA+TGG + chr2_3:6878896-6878915 None:intergenic 45.0%
! TAACACGTGTTTTGTCGTGG+AGG - chr2_3:6879510-6879529 Msa0275000:CDS 45.0%
! ATGCCTTGTGCGCTAGTTTA+TGG - chr2_3:6879598-6879617 Msa0275000:CDS 45.0%
ACACCATAAACTAGCGCACA+AGG + chr2_3:6879604-6879623 None:intergenic 45.0%
! GTCATCTGTTGTGCTGATAG+TGG - chr2_3:6879649-6879668 Msa0275000:CDS 45.0%
! CATCTGTTGTGCTGATAGTG+GGG - chr2_3:6879651-6879670 Msa0275000:CDS 45.0%
!! ATCTGTTGTGCTGATAGTGG+GGG - chr2_3:6879652-6879671 Msa0275000:CDS 45.0%
!! CTGCTATGGTGCAGTTTTGT+TGG - chr2_3:6879675-6879694 Msa0275000:CDS 45.0%
!!! GCCTGTTTGTTGTTTTCAGC+TGG - chr2_3:6879736-6879755 Msa0275000:CDS 45.0%
CGACCAGAAGCCAAAAAACA+AGG + chr2_3:6879843-6879862 None:intergenic 45.0%
TCCTGCTGCTGTCTTATATC+AGG - chr2_3:6879924-6879943 Msa0275000:CDS 45.0%
TCCTGATATAAGACAGCAGC+AGG + chr2_3:6879928-6879947 None:intergenic 45.0%
! CTTGTACTCTTTTCCCTCCT+CGG - chr2_3:6880006-6880025 Msa0275000:CDS 45.0%
AAATATGACGGCGCAAGTGC+AGG - chr2_3:6876166-6876185 Msa0275000:CDS 50.0%
CGCAAGTGCAGGAGATAGTA+CGG - chr2_3:6876177-6876196 Msa0275000:CDS 50.0%
ACGTTGCCTAGACAGAGGTT+TGG + chr2_3:6876804-6876823 None:intergenic 50.0%
! TGATGACGTTGCCTAGACAG+AGG + chr2_3:6876809-6876828 None:intergenic 50.0%
TAACACACCCCCGCAAGATA+GGG + chr2_3:6876868-6876887 None:intergenic 50.0%
TTAACACACCCCCGCAAGAT+AGG + chr2_3:6876869-6876888 None:intergenic 50.0%
! TATCTTGCGGGGGTGTGTTA+AGG - chr2_3:6876868-6876887 Msa0275000:intron 50.0%
ACTGGCCGATTAAAGTCCGT+CGG + chr2_3:6877476-6877495 None:intergenic 50.0%
TTGTCCTCTATGAGTGGTGC+TGG + chr2_3:6877605-6877624 None:intergenic 50.0%
AGTCGGTTGTCTATTACCCG+AGG - chr2_3:6877816-6877835 Msa0275000:intron 50.0%
ACCCGAGGAAGAAGGAGTTA+AGG - chr2_3:6877831-6877850 Msa0275000:intron 50.0%
GATGGTGTGGCTTCATGATC+AGG - chr2_3:6878571-6878590 Msa0275000:intron 50.0%
CATAAGCGGCAGTTCTTTGG+GGG + chr2_3:6878643-6878662 None:intergenic 50.0%
TCCTTGGACTCTAGCTGAGA+AGG + chr2_3:6878717-6878736 None:intergenic 50.0%
TCAGCTAGAGTCCAAGGAGT+TGG - chr2_3:6878719-6878738 Msa0275000:intron 50.0%
CAGCTAGAGTCCAAGGAGTT+GGG - chr2_3:6878720-6878739 Msa0275000:intron 50.0%
GTTCAGGCTGTAGCAACTGA+AGG - chr2_3:6879258-6879277 Msa0275000:intron 50.0%
!!! AGAGGTGGTTGCTGTTTTGC+AGG - chr2_3:6879712-6879731 Msa0275000:CDS 50.0%
!! GCTGCAGAAGCTTGCTGTTT+CGG - chr2_3:6879778-6879797 Msa0275000:CDS 50.0%
GTTGCTGGTGCAACACAGAA+AGG + chr2_3:6879804-6879823 None:intergenic 50.0%
! GGCTATGTCAGGCCTTGTCA+TGG + chr2_3:6876239-6876258 None:intergenic 55.0%
! TTCAGTGATGCCGATTGGGC+TGG - chr2_3:6876407-6876426 Msa0275000:CDS 55.0%
CCAGAGAACTTCTGCGGATG+CGG + chr2_3:6876564-6876583 None:intergenic 55.0%
GCCTCACCAAACCTCTGTCT+AGG - chr2_3:6876795-6876814 Msa0275000:intron 55.0%
!! GCCTAGACAGAGGTTTGGTG+AGG + chr2_3:6876799-6876818 None:intergenic 55.0%
CTGACGGTACCCCTATCTTG+CGG - chr2_3:6876855-6876874 Msa0275000:CDS 55.0%
TGACGGTACCCCTATCTTGC+GGG - chr2_3:6876856-6876875 Msa0275000:CDS 55.0%
AACACACCCCCGCAAGATAG+GGG + chr2_3:6876867-6876886 None:intergenic 55.0%
! CGGGGGTGTGTTAAGGTTAC+AGG - chr2_3:6876875-6876894 Msa0275000:intron 55.0%
! TCCTCTATGAGTGGTGCTGG+CGG + chr2_3:6877602-6877621 None:intergenic 55.0%
GACTCTAGCTGAGAAGGCCA+AGG + chr2_3:6878711-6878730 None:intergenic 55.0%
GCCTTCTCAGCTAGAGTCCA+AGG - chr2_3:6878713-6878732 Msa0275000:intron 55.0%
CATAACGCAGCCCAACTCCT+TGG + chr2_3:6878733-6878752 None:intergenic 55.0%
CAAGGAGTTGGGCTGCGTTA+TGG - chr2_3:6878731-6878750 Msa0275000:intron 55.0%
! CACGTGTTTTGTCGTGGAGG+TGG - chr2_3:6879513-6879532 Msa0275000:CDS 55.0%
! CGAATGGTGTTGGGATCCCA+TGG - chr2_3:6879574-6879593 Msa0275000:CDS 55.0%
TAGCGCACAAGGCATGCCAT+GGG + chr2_3:6879593-6879612 None:intergenic 55.0%
ATGACCACAGCAGCGCACAA+AGG + chr2_3:6879634-6879653 None:intergenic 55.0%
!!! GGTGCAGTTTTGTTGGCCTG+TGG - chr2_3:6879682-6879701 Msa0275000:CDS 55.0%
!! TTGGCCTGTGGTGCTATCAG+AGG - chr2_3:6879694-6879713 Msa0275000:CDS 55.0%
ACCACCTCTGATAGCACCAC+AGG + chr2_3:6879701-6879720 None:intergenic 55.0%
! TACTCTTTTCCCTCCTCGGC+AGG - chr2_3:6880010-6880029 Msa0275000:CDS 55.0%
CCGCATCCGCAGAAGTTCTC+TGG - chr2_3:6876561-6876580 Msa0275000:intron 60.0%
GACGGTACCCCTATCTTGCG+GGG - chr2_3:6876857-6876876 Msa0275000:CDS 60.0%
ACGGTACCCCTATCTTGCGG+GGG - chr2_3:6876858-6876877 Msa0275000:CDS 60.0%
TCCGCCAGCACCACTCATAG+AGG - chr2_3:6877598-6877617 Msa0275000:intron 60.0%
CTAGCGCACAAGGCATGCCA+TGG + chr2_3:6879594-6879613 None:intergenic 60.0%
!! GCTGATAGTGGGGGCTGCTA+TGG - chr2_3:6879661-6879680 Msa0275000:CDS 60.0%
!! GCCTGTGGTGCTATCAGAGG+TGG - chr2_3:6879697-6879716 Msa0275000:CDS 60.0%
GGGTCCTTTGTGCGCTGCTG+TGG - chr2_3:6879627-6879646 Msa0275000:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 6876112 6880037 6876112 ID=Msa0275000;Name=Msa0275000
chr2_3 mRNA 6876112 6880037 6876112 ID=Msa0275000-mRNA-1;Parent=Msa0275000;Name=Msa0275000-mRNA-1;_AED=0.53;_eAED=0.53;_QI=0|0.37|0.33|0.77|1|1|9|0|487
chr2_3 exon 6879885 6880037 6879885 ID=Msa0275000-mRNA-1:exon:3265;Parent=Msa0275000-mRNA-1
chr2_3 exon 6879289 6879802 6879289 ID=Msa0275000-mRNA-1:exon:3264;Parent=Msa0275000-mRNA-1
chr2_3 exon 6878282 6878385 6878282 ID=Msa0275000-mRNA-1:exon:3263;Parent=Msa0275000-mRNA-1
chr2_3 exon 6877397 6877556 6877397 ID=Msa0275000-mRNA-1:exon:3262;Parent=Msa0275000-mRNA-1
chr2_3 exon 6876991 6877067 6876991 ID=Msa0275000-mRNA-1:exon:3261;Parent=Msa0275000-mRNA-1
chr2_3 exon 6876832 6876885 6876832 ID=Msa0275000-mRNA-1:exon:3260;Parent=Msa0275000-mRNA-1
chr2_3 exon 6876595 6876736 6876595 ID=Msa0275000-mRNA-1:exon:3259;Parent=Msa0275000-mRNA-1
chr2_3 exon 6876313 6876480 6876313 ID=Msa0275000-mRNA-1:exon:3258;Parent=Msa0275000-mRNA-1
chr2_3 exon 6876112 6876203 6876112 ID=Msa0275000-mRNA-1:exon:3257;Parent=Msa0275000-mRNA-1
chr2_3 CDS 6879885 6880037 6879885 ID=Msa0275000-mRNA-1:cds;Parent=Msa0275000-mRNA-1
chr2_3 CDS 6879289 6879802 6879289 ID=Msa0275000-mRNA-1:cds;Parent=Msa0275000-mRNA-1
chr2_3 CDS 6878282 6878385 6878282 ID=Msa0275000-mRNA-1:cds;Parent=Msa0275000-mRNA-1
chr2_3 CDS 6877397 6877556 6877397 ID=Msa0275000-mRNA-1:cds;Parent=Msa0275000-mRNA-1
chr2_3 CDS 6876991 6877067 6876991 ID=Msa0275000-mRNA-1:cds;Parent=Msa0275000-mRNA-1
chr2_3 CDS 6876832 6876885 6876832 ID=Msa0275000-mRNA-1:cds;Parent=Msa0275000-mRNA-1
chr2_3 CDS 6876595 6876736 6876595 ID=Msa0275000-mRNA-1:cds;Parent=Msa0275000-mRNA-1
chr2_3 CDS 6876313 6876480 6876313 ID=Msa0275000-mRNA-1:cds;Parent=Msa0275000-mRNA-1
chr2_3 CDS 6876112 6876203 6876112 ID=Msa0275000-mRNA-1:cds;Parent=Msa0275000-mRNA-1
Gene Sequence

>Msa0275000

ATGAAAGATGCAAAGATTGTCCATTCACCGATGTCTACATCCTCTCCTCTTACTAAATATGACGGCGCAAGTGCAGGAGATAGTACGGAATACAGAAGCGTCATAGGGGCTCTACAATATTTGTCCATGACAAGGCCTGACATAGCCTACACTCCACCATGTTTCATGCATGGACTTCACTTGAAGCGCACTTCTTCTCAAAATCTTTATGCATTCAGTGATGCCGATTGGGCTGGAAATCGAGATGATTATACATCCACCTCTGCACATGTTACATTTTATGGTGGTAACCCAATTTCTTGGAAGTCTTTTAAACAAAAAGTTGTTGCAAGATCATCCACTGAAGCTGAATACAGAGCTATAGCATCCGCATCCGCAGAAGTTCTCTGGTTGTCATCACTTCTCTCTGAACTTCATGTCAGTTTACCCACTATTCCTACCATCTACTGTGACAATCTCGGTGCCACTTATCTCACTGTCAATCCCGTCTTCCATAGTCGCATGAAGCACATTGCCATAGATATTCATTTTGTCAGAGATCATGTCAGAAATAAAAAGATTTGGGTTCAACATGTTTCCACTAAAGATCAGCTAGCAGATTGCCTCACCAAACCTCTGTCTAGGCAACGTCATCAAGATCTTCGTTTCAAGATAGGCGTATCTGACGTCATTCTCGTTTTCCCTTCATCTAGGTTTGGTCATTTGTTCATCTCACTAATAGTCGGTTGTCTATTACCCGAGGAAGAAGGAGTTAAGGAAAGAAGAATGAAGGTTTCTGGAAAGGTGACTTATAATGGTCATGAGATGAGTGAGTTTGTCCCCCAAAGAACTGCCGCTTATGTAGATCAAAATGATCTTCACATTGCAGAAATGACTGTTAGAGAAACCTTGGCCTTCTCAGCTAGAGTCCAAGGAGTTGGGCTGCGTTATGACTTGCTAGCAGAGCTGTCCAGACGAGAAAAACATGCAAATATCATGCCCGATCCAGACATTGATGTGTACATGAAGGCTGTAGCAACTGAAGGCCAGAAAGCAAATTTGATAACATATTATGTCCTAAGGATTTTGGGACTAGAGACATGTGCTGATACTGTTGTAGGGAATGCAATGTTAAGAGGTATCTCTGGTGGACAAAAGAAACGTGTTAAAAGGTGGTATCTAACACGTGTTTTGTCGTGGAGGTGGTATCTAACACGTGTTAAAATGGGGGCTGCTATGGTGCAGTTTTGTTGGCCTGTGGTGCTATCAGAGGTGGTTGCTGTTTTGCAGGTGCCTGTTTGTTGTTTTCAGCTGGTTCAAGTTCGTGTTCGAGTGCTGCAGAAGCTTGCTGTTTCGGCCTTTCTGTGTTGCACCAGCAACATCCTTGTTTTTGGAAGTAGGAGGTTTTTTAGTGAGCTTGATTGGTGTTTGGGTGCTTTTTCATTAGCCCTATCTTGTACTCTTTTCCCTCCTCGGCAGGTTTAG

Protein sequence

>Msa0275000

MKDAKIVHSPMSTSSPLTKYDGASAGDSTEYRSVIGALQYLSMTRPDIAYTPPCFMHGLHLKRTSSQNLYAFSDADWAGNRDDYTSTSAHVTFYGGNPISWKSFKQKVVARSSTEAEYRAIASASAEVLWLSSLLSELHVSLPTIPTIYCDNLGATYLTVNPVFHSRMKHIAIDIHFVRDHVRNKKIWVQHVSTKDQLADCLTKPLSRQRHQDLRFKIGVSDVILVFPSSRFGHLFISLIVGCLLPEEEGVKERRMKVSGKVTYNGHEMSEFVPQRTAAYVDQNDLHIAEMTVRETLAFSARVQGVGLRYDLLAELSRREKHANIMPDPDIDVYMKAVATEGQKANLITYYVLRILGLETCADTVVGNAMLRGISGGQKKRVKRWYLTRVLSWRWYLTRVKMGAAMVQFCWPVVLSEVVAVLQVPVCCFQLVQVRVRVLQKLAVSAFLCCTSNILVFGSRRFFSELDWCLGAFSLALSCTLFPPRQV*