Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804020 | XP_003613016.1 | 97.647 | 425 | 5 | 1 | 1 | 425 | 1 | 420 | 0.0 | 849 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804020 | sp|Q8W4B1|RCF3_ARATH | 28.922 | 408 | 247 | 11 | 46 | 425 | 70 | 462 | 3.01e-35 | 141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804020 | G7JWB3 | 97.647 | 425 | 5 | 1 | 1 | 425 | 1 | 420 | 0.0 | 849 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0606120 | Msa0804020 | 0.800369 | 1.488327e-48 | -8.615850e-47 |
| Msa0732970 | Msa0804020 | 0.800781 | 1.227055e-48 | -8.615850e-47 |
| Msa0761830 | Msa0804020 | 0.803083 | 4.129488e-49 | -8.615850e-47 |
| Msa0795880 | Msa0804020 | 0.802619 | 5.148710e-49 | -8.615850e-47 |
| Msa0804020 | Msa0804170 | 0.824457 | 7.989080e-54 | -8.615850e-47 |
| Msa0804020 | Msa0842180 | 0.808182 | 3.511944e-50 | -8.615850e-47 |
| Msa0804020 | Msa1036260 | -0.804702 | 1.902801e-49 | -8.615850e-47 |
| Msa0804020 | Msa1132850 | 0.815958 | 7.078434e-52 | -8.615850e-47 |
| Msa0804020 | Msa1286860 | -0.800558 | 1.362095e-48 | -8.615850e-47 |
| Msa0804020 | Msa1328280 | 0.801560 | 8.499881e-49 | -8.615850e-47 |
| Msa0804020 | Msa1413020 | 0.826028 | 3.396412e-54 | -8.615850e-47 |
| Msa0132080 | Msa0804020 | -0.801442 | 8.985040e-49 | -8.615850e-47 |
| Msa0132920 | Msa0804020 | -0.801902 | 7.233378e-49 | -8.615850e-47 |
| Msa0436100 | Msa0804020 | 0.807749 | 4.341299e-50 | -8.615850e-47 |
| Msa0290800 | Msa0804020 | 0.801452 | 8.946682e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804020 | MtrunA17_Chr5g0412061 | 97.647 | 425 | 5 | 1 | 1 | 425 | 1 | 420 | 0.0 | 849 |
| Msa0804020 | MtrunA17_Chr2g0279641 | 35.421 | 463 | 241 | 12 | 18 | 425 | 18 | 477 | 1.18e-68 | 232 |
| Msa0804020 | MtrunA17_Chr2g0279641 | 28.230 | 209 | 125 | 4 | 43 | 242 | 330 | 522 | 4.83e-17 | 83.6 |
| Msa0804020 | MtrunA17_Chr4g0049801 | 36.186 | 409 | 232 | 9 | 37 | 425 | 13 | 412 | 1.58e-67 | 226 |
| Msa0804020 | MtrunA17_Chr4g0049801 | 26.866 | 335 | 174 | 11 | 40 | 318 | 262 | 581 | 1.37e-18 | 88.2 |
| Msa0804020 | MtrunA17_Chr4g0002241 | 33.171 | 410 | 217 | 12 | 27 | 425 | 1 | 364 | 1.08e-41 | 155 |
| Msa0804020 | MtrunA17_Chr4g0002241 | 29.386 | 228 | 138 | 7 | 8 | 227 | 186 | 398 | 3.97e-19 | 89.7 |
| Msa0804020 | MtrunA17_Chr6g0453421 | 30.467 | 407 | 261 | 10 | 30 | 425 | 33 | 428 | 1.17e-36 | 141 |
| Msa0804020 | MtrunA17_Chr2g0285771 | 26.667 | 420 | 256 | 9 | 44 | 425 | 42 | 447 | 2.85e-33 | 132 |
| Msa0804020 | MtrunA17_Chr2g0285771 | 23.304 | 339 | 188 | 10 | 43 | 335 | 312 | 624 | 8.87e-11 | 63.9 |
| Msa0804020 | MtrunA17_Chr3g0127051 | 26.077 | 418 | 256 | 11 | 45 | 425 | 64 | 465 | 6.36e-33 | 131 |
| Msa0804020 | MtrunA17_Chr3g0140741 | 29.847 | 459 | 246 | 14 | 26 | 425 | 10 | 451 | 2.84e-32 | 129 |
| Msa0804020 | MtrunA17_Chr3g0140741 | 32.796 | 186 | 100 | 6 | 32 | 210 | 304 | 471 | 2.55e-19 | 90.5 |
| Msa0804020 | MtrunA17_Chr8g0376551 | 25.909 | 440 | 238 | 9 | 44 | 425 | 40 | 449 | 3.80e-32 | 129 |
| Msa0804020 | MtrunA17_Chr7g0217681 | 30.147 | 408 | 259 | 10 | 34 | 425 | 39 | 436 | 2.33e-31 | 126 |
| Msa0804020 | MtrunA17_Chr5g0421531 | 88.000 | 50 | 1 | 1 | 1 | 50 | 1 | 45 | 1.24e-24 | 95.9 |
| Msa0804020 | MtrunA17_Chr4g0071791 | 33.155 | 187 | 104 | 4 | 24 | 201 | 27 | 201 | 1.18e-19 | 90.9 |
| Msa0804020 | MtrunA17_Chr4g0071791 | 31.579 | 171 | 114 | 3 | 251 | 420 | 16 | 184 | 3.15e-13 | 71.2 |
| Msa0804020 | MtrunA17_Chr2g0298721 | 32.941 | 170 | 96 | 3 | 41 | 201 | 67 | 227 | 2.15e-18 | 87.0 |
| Msa0804020 | MtrunA17_Chr2g0298721 | 32.836 | 134 | 88 | 2 | 281 | 413 | 71 | 203 | 3.26e-12 | 68.2 |
| Msa0804020 | MtrunA17_Chr7g0274301 | 28.902 | 173 | 110 | 4 | 41 | 209 | 112 | 275 | 5.79e-15 | 76.6 |
| Msa0804020 | MtrunA17_Chr1g0184511 | 27.528 | 178 | 110 | 4 | 41 | 209 | 162 | 329 | 1.26e-13 | 72.8 |
| Msa0804020 | MtrunA17_Chr7g0249721 | 28.571 | 196 | 115 | 8 | 44 | 226 | 100 | 283 | 4.80e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804020 | AT2G22600.1 | 38.443 | 424 | 219 | 8 | 31 | 426 | 12 | 421 | 3.10e-81 | 263 |
| Msa0804020 | AT1G51580.1 | 31.050 | 438 | 239 | 13 | 27 | 425 | 1 | 414 | 1.08e-46 | 170 |
| Msa0804020 | AT1G51580.1 | 33.333 | 195 | 110 | 6 | 16 | 204 | 248 | 428 | 9.74e-20 | 92.0 |
| Msa0804020 | AT5G15270.3 | 32.152 | 395 | 231 | 11 | 46 | 425 | 52 | 424 | 4.31e-41 | 153 |
| Msa0804020 | AT5G15270.3 | 31.447 | 159 | 99 | 3 | 280 | 430 | 50 | 206 | 7.53e-15 | 77.0 |
| Msa0804020 | AT5G15270.2 | 32.405 | 395 | 230 | 11 | 46 | 425 | 52 | 424 | 4.33e-41 | 154 |
| Msa0804020 | AT5G15270.2 | 31.447 | 159 | 99 | 3 | 280 | 430 | 50 | 206 | 9.77e-15 | 76.6 |
| Msa0804020 | AT5G15270.1 | 32.405 | 395 | 230 | 11 | 46 | 425 | 52 | 424 | 4.33e-41 | 154 |
| Msa0804020 | AT5G15270.1 | 31.447 | 159 | 99 | 3 | 280 | 430 | 50 | 206 | 9.77e-15 | 76.6 |
| Msa0804020 | AT5G53060.1 | 28.922 | 408 | 247 | 11 | 46 | 425 | 70 | 462 | 3.06e-36 | 141 |
| Msa0804020 | AT5G53060.3 | 28.922 | 408 | 247 | 11 | 46 | 425 | 70 | 462 | 3.27e-36 | 140 |
| Msa0804020 | AT5G46190.2 | 26.230 | 427 | 253 | 12 | 44 | 425 | 44 | 453 | 9.60e-33 | 131 |
| Msa0804020 | AT5G46190.2 | 28.070 | 171 | 107 | 3 | 43 | 210 | 316 | 473 | 2.72e-12 | 69.3 |
| Msa0804020 | AT5G46190.1 | 26.464 | 427 | 252 | 13 | 44 | 425 | 44 | 453 | 1.21e-32 | 130 |
| Msa0804020 | AT5G46190.1 | 28.070 | 171 | 107 | 3 | 43 | 210 | 316 | 473 | 2.61e-12 | 69.3 |
| Msa0804020 | AT5G46190.4 | 26.464 | 427 | 252 | 13 | 44 | 425 | 44 | 453 | 1.21e-32 | 130 |
| Msa0804020 | AT5G46190.4 | 28.070 | 171 | 107 | 3 | 43 | 210 | 316 | 473 | 2.61e-12 | 69.3 |
| Msa0804020 | AT5G46190.3 | 26.464 | 427 | 252 | 13 | 44 | 425 | 44 | 453 | 1.21e-32 | 130 |
| Msa0804020 | AT5G46190.3 | 28.070 | 171 | 107 | 3 | 43 | 210 | 316 | 473 | 2.61e-12 | 69.3 |
| Msa0804020 | AT5G64390.2 | 37.500 | 192 | 102 | 3 | 42 | 219 | 45 | 232 | 2.72e-29 | 121 |
| Msa0804020 | AT5G64390.2 | 40.523 | 153 | 76 | 3 | 280 | 425 | 452 | 596 | 4.89e-23 | 102 |
| Msa0804020 | AT5G64390.2 | 27.551 | 196 | 116 | 4 | 22 | 210 | 440 | 616 | 2.10e-19 | 91.7 |
| Msa0804020 | AT5G64390.3 | 37.500 | 192 | 102 | 3 | 42 | 219 | 45 | 232 | 2.90e-29 | 121 |
| Msa0804020 | AT5G64390.3 | 40.523 | 153 | 76 | 3 | 280 | 425 | 452 | 596 | 5.22e-23 | 102 |
| Msa0804020 | AT5G64390.3 | 27.551 | 196 | 116 | 4 | 22 | 210 | 440 | 616 | 2.18e-19 | 91.7 |
| Msa0804020 | AT5G64390.1 | 37.500 | 192 | 102 | 3 | 42 | 219 | 45 | 232 | 3.04e-29 | 121 |
| Msa0804020 | AT5G64390.1 | 40.523 | 153 | 76 | 3 | 280 | 425 | 452 | 596 | 4.91e-23 | 102 |
| Msa0804020 | AT5G64390.1 | 27.551 | 196 | 116 | 4 | 22 | 210 | 440 | 616 | 2.29e-19 | 91.3 |
| Msa0804020 | AT5G09560.1 | 27.107 | 439 | 243 | 12 | 44 | 425 | 30 | 448 | 4.46e-27 | 114 |
| Msa0804020 | AT4G18375.3 | 25.000 | 416 | 247 | 11 | 44 | 411 | 36 | 434 | 7.09e-25 | 107 |
| Msa0804020 | AT4G18375.2 | 25.000 | 416 | 247 | 11 | 44 | 411 | 36 | 434 | 1.07e-24 | 107 |
| Msa0804020 | AT1G14170.1 | 28.070 | 399 | 232 | 11 | 46 | 425 | 21 | 383 | 6.23e-24 | 103 |
| Msa0804020 | AT1G14170.2 | 27.889 | 398 | 234 | 10 | 46 | 425 | 13 | 375 | 6.30e-24 | 103 |
| Msa0804020 | AT1G14170.3 | 27.889 | 398 | 234 | 10 | 46 | 425 | 46 | 408 | 1.17e-23 | 103 |
| Msa0804020 | AT4G26000.1 | 32.941 | 170 | 96 | 4 | 41 | 201 | 71 | 231 | 9.64e-19 | 89.0 |
| Msa0804020 | AT4G26000.1 | 33.143 | 175 | 108 | 6 | 258 | 426 | 50 | 221 | 7.40e-13 | 70.5 |
| Msa0804020 | AT3G04610.2 | 27.841 | 176 | 111 | 4 | 40 | 208 | 183 | 349 | 1.40e-12 | 70.1 |
| Msa0804020 | AT3G04610.1 | 27.841 | 176 | 111 | 4 | 40 | 208 | 183 | 349 | 1.40e-12 | 70.1 |
| Msa0804020 | AT3G04610.3 | 27.841 | 176 | 111 | 4 | 40 | 208 | 159 | 325 | 1.91e-12 | 69.7 |
| Msa0804020 | AT3G04610.4 | 27.841 | 176 | 111 | 4 | 40 | 208 | 159 | 325 | 1.91e-12 | 69.7 |
Find 115 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTGATGATAGGGTTATTT+TGG | 0.147477 | 5_3:-19612632 | Msa0804020:CDS |
| ATAATAGTGGTTCTAATATT+AGG | 0.149891 | 5_3:-19612390 | Msa0804020:CDS |
| TGATGGGTTGTGATGATTTA+AGG | 0.192696 | 5_3:+19612976 | None:intergenic |
| GTGGTGGTGGTTGTGGGTGG+TGG | 0.271313 | 5_3:+19612842 | None:intergenic |
| ATTGTCTTTGCCCCTCCTTT+AGG | 0.294721 | 5_3:-19610550 | Msa0804020:CDS |
| GGTGGTTTGATCGGAAGTTC+AGG | 0.319858 | 5_3:-19612721 | Msa0804020:CDS |
| TTGGCACATAGTTCTCAAAT+TGG | 0.322433 | 5_3:-19612457 | Msa0804020:CDS |
| TAATAGTGGTTCTAATATTA+GGG | 0.324572 | 5_3:-19612389 | Msa0804020:CDS |
| ATGCACAAGAAGGTGTTGTT+AGG | 0.326843 | 5_3:-19612546 | Msa0804020:CDS |
| ATTAAAAGCCTCGCAGTTAC+AGG | 0.344522 | 5_3:+19610290 | None:intergenic |
| TAATTCATGGTTACCTTCAA+TGG | 0.351322 | 5_3:-19610758 | Msa0804020:CDS |
| TTGAAGGTAACCATGAATTA+AGG | 0.351702 | 5_3:+19610761 | None:intergenic |
| GGAAGAATATAAGTAATATT+AGG | 0.355385 | 5_3:-19612414 | Msa0804020:CDS |
| CGGTGGTTGGGACTGATGAT+AGG | 0.355410 | 5_3:-19612642 | Msa0804020:CDS |
| TTCAACGGCGGCGGAGAAAG+TGG | 0.361395 | 5_3:+19612876 | None:intergenic |
| TTTGTTGAAGTTAACGTTGA+TGG | 0.362624 | 5_3:+19612959 | None:intergenic |
| TGGTGAAAAGGAGATTTGTT+TGG | 0.364184 | 5_3:+19613007 | None:intergenic |
| GGATCGAAAAGGGATTGTTT+TGG | 0.364192 | 5_3:-19612593 | Msa0804020:CDS |
| ATAGATAAACCTTCCATTGA+AGG | 0.366335 | 5_3:+19610745 | None:intergenic |
| GGTGAAAAGGAGATTTGTTT+GGG | 0.372821 | 5_3:+19613008 | None:intergenic |
| TCTCAAATTGGTGCTATTGT+TGG | 0.387365 | 5_3:-19612445 | Msa0804020:CDS |
| GGGGAAATGGTGAAGTTTAT+GGG | 0.388390 | 5_3:-19612486 | Msa0804020:CDS |
| TTATCTGAAGCATTAGGAAT+TGG | 0.392353 | 5_3:+19610167 | None:intergenic |
| TTGTTTGATTGGCAGATAAC+TGG | 0.397706 | 5_3:-19610934 | Msa0804020:intron |
| ATAGAGTGAGAAAGTTGAAA+TGG | 0.403621 | 5_3:+19613043 | None:intergenic |
| GCAGATAACTGGTGAAAGTT+TGG | 0.404422 | 5_3:-19610923 | Msa0804020:intron |
| AGCCTTGACTCAAAAGGTTC+CGG | 0.414704 | 5_3:-19610679 | Msa0804020:CDS |
| TCTGAAAACAACTGCGTGTC+CGG | 0.415016 | 5_3:+19610660 | None:intergenic |
| CAGGAGAATTACTTGATTCA+AGG | 0.415861 | 5_3:+19610399 | None:intergenic |
| AGACAATAGAAGCACCAGTT+TGG | 0.418301 | 5_3:+19610566 | None:intergenic |
| AAAGTTGAAATGGAATGAAA+AGG | 0.421641 | 5_3:+19613053 | None:intergenic |
| GTGGTGGTGGTGGTTGTGGG+TGG | 0.422185 | 5_3:+19612839 | None:intergenic |
| ACTGCGAGGATGCGGTGGTT+GGG | 0.428519 | 5_3:-19612654 | Msa0804020:CDS |
| TCTCAGCTCCGGCGAGAAAC+CGG | 0.437451 | 5_3:-19612688 | Msa0804020:CDS |
| GCTGAAGATCACATTCGAAA+TGG | 0.439609 | 5_3:-19610341 | Msa0804020:CDS |
| GTCTGTCATTCGTCAACGGT+TGG | 0.440219 | 5_3:-19612742 | Msa0804020:CDS |
| ATTGGTGCTATTGTTGGAAA+AGG | 0.443461 | 5_3:-19612439 | Msa0804020:CDS |
| ACATCATTATCTGAAGCATT+AGG | 0.450838 | 5_3:+19610161 | None:intergenic |
| CACCACCGTCGTCGTTGAAA+AGG | 0.457109 | 5_3:-19612822 | Msa0804020:CDS |
| CACTGCGAGGATGCGGTGGT+TGG | 0.458500 | 5_3:-19612655 | Msa0804020:CDS |
| CATTTATTGACTGGTAATGA+AGG | 0.460032 | 5_3:-19610251 | Msa0804020:CDS |
| GGGTCGATGTCGGATCGAAA+AGG | 0.463768 | 5_3:-19612604 | Msa0804020:CDS |
| GGGTCAGATCGCGTTTCGTT+TGG | 0.464151 | 5_3:-19612764 | Msa0804020:CDS |
| CGCTCTTCATACTGACCTAA+AGG | 0.469766 | 5_3:+19610535 | None:intergenic |
| ATTGACTGGTAATGAAGGTC+AGG | 0.471664 | 5_3:-19610246 | Msa0804020:CDS |
| TCAACGGTTGGTGGTTTGAT+CGG | 0.472884 | 5_3:-19612730 | Msa0804020:CDS |
| AAGTTGAAATGGAATGAAAA+GGG | 0.475503 | 5_3:+19613054 | None:intergenic |
| CAACTATTAACTCGTCTGAT+AGG | 0.481981 | 5_3:-19610819 | Msa0804020:CDS |
| TCAACGGCGGCGGAGAAAGT+GGG | 0.487788 | 5_3:+19612877 | None:intergenic |
| AGTAATATTAGGAATAATAG+TGG | 0.489092 | 5_3:-19612403 | Msa0804020:CDS |
| GGTCGATGTCGGATCGAAAA+GGG | 0.489118 | 5_3:-19612603 | Msa0804020:CDS |
| TGCACAAGAAGGTGTTGTTA+GGG | 0.491683 | 5_3:-19612545 | Msa0804020:CDS |
| ACCCGGTAGAAGTTTGAAAA+CGG | 0.492942 | 5_3:+19612783 | None:intergenic |
| CCCGGTAGAAGTTTGAAAAC+GGG | 0.493933 | 5_3:+19612784 | None:intergenic |
| CCATCGGTGGACAATCTTGA+AGG | 0.498071 | 5_3:+19610866 | None:intergenic |
| AGCACGTTACATTTATTGAC+TGG | 0.502822 | 5_3:-19610260 | Msa0804020:CDS |
| TTGTGGGTGGTGGTGATCAG+TGG | 0.505493 | 5_3:+19612852 | None:intergenic |
| TTCAACGACGACGGTGGTGG+TGG | 0.507588 | 5_3:+19612826 | None:intergenic |
| AACTCTAGCCTTGACTCAAA+AGG | 0.511462 | 5_3:-19610685 | Msa0804020:CDS |
| TTGTTGAAGTTAACGTTGAT+GGG | 0.518113 | 5_3:+19612960 | None:intergenic |
| CCTTCAAGATTGTCCACCGA+TGG | 0.518134 | 5_3:-19610866 | Msa0804020:CDS |
| GGTGATTCCACAGCAGTGGC+TGG | 0.521992 | 5_3:+19610311 | None:intergenic |
| AACGACGACGGTGGTGGTGG+TGG | 0.525846 | 5_3:+19612829 | None:intergenic |
| CAAAATCCACTGCGAGGATG+CGG | 0.528018 | 5_3:-19612662 | Msa0804020:CDS |
| GGTCAATCGTTTCTCAGCTC+CGG | 0.528256 | 5_3:-19612699 | Msa0804020:CDS |
| AGATAATGATGTGGTAGTCC+AGG | 0.528924 | 5_3:-19610150 | Msa0804020:CDS |
| TCATGGTTACCTTCAATGGA+AGG | 0.529880 | 5_3:-19610754 | Msa0804020:CDS |
| TTTGGGTGATAGGGAAATGG+AGG | 0.531899 | 5_3:-19612575 | Msa0804020:CDS |
| TGAAGTTTATGGGAAATTGT+TGG | 0.532182 | 5_3:-19612476 | Msa0804020:CDS |
| GTGGTTTGATCGGAAGTTCA+GGG | 0.539408 | 5_3:-19612720 | Msa0804020:CDS |
| TTTGGTCTGTCATTCGTCAA+CGG | 0.540079 | 5_3:-19612746 | Msa0804020:CDS |
| ATCAGTGGTTTCAACGGCGG+CGG | 0.541422 | 5_3:+19612867 | None:intergenic |
| CAGAATTGAGAGAAGTGAGT+GGG | 0.546377 | 5_3:-19610217 | Msa0804020:CDS |
| TTTGGTAATTGGGTCGATGT+CGG | 0.546404 | 5_3:-19612614 | Msa0804020:CDS |
| CTATCAGACGAGTTAATAGT+TGG | 0.551225 | 5_3:+19610820 | None:intergenic |
| GGTGCTATTGTTGGAAAAGG+AGG | 0.558034 | 5_3:-19612436 | Msa0804020:CDS |
| GTGCTATTGTTGGAAAAGGA+GGG | 0.558057 | 5_3:-19612435 | Msa0804020:CDS |
| CTTCAAGATTGTCCACCGAT+GGG | 0.558317 | 5_3:-19610865 | Msa0804020:CDS |
| TTAGCAGCACAATGTGGAGC+AGG | 0.560665 | 5_3:+19612361 | None:intergenic |
| AACGTAGCTGGTAGTGTGAT+CGG | 0.561462 | 5_3:-19610622 | Msa0804020:CDS |
| AGAATAACAGCATCTTGTGC+AGG | 0.563491 | 5_3:+19610380 | None:intergenic |
| AAACGAAACGCGATCTGACC+CGG | 0.565332 | 5_3:+19612766 | None:intergenic |
| TTCAAAGATACTTTGCCCAT+CGG | 0.567264 | 5_3:+19610850 | None:intergenic |
| TGTCATTCGTCAACGGTTGG+TGG | 0.568038 | 5_3:-19612739 | Msa0804020:CDS |
| AAAGATACTTTGCCCATCGG+TGG | 0.569779 | 5_3:+19610853 | None:intergenic |
| CTTTGCTCTAACAACGTAGC+TGG | 0.572622 | 5_3:-19610634 | Msa0804020:CDS |
| GGGGCTTGAAAGTGAGAAAG+GGG | 0.582131 | 5_3:-19612506 | Msa0804020:CDS |
| GTGGTGATCAGTGGTTTCAA+CGG | 0.585651 | 5_3:+19612861 | None:intergenic |
| GGTGGTTGGGACTGATGATA+GGG | 0.586312 | 5_3:-19612641 | Msa0804020:CDS |
| GAATGAAAAGGGTATTGTGA+AGG | 0.597424 | 5_3:+19613065 | None:intergenic |
| AATCCACTGCGAGGATGCGG+TGG | 0.602490 | 5_3:-19612659 | Msa0804020:CDS |
| CAGCTACGTTGTTAGAGCAA+AGG | 0.602643 | 5_3:+19610635 | None:intergenic |
| CTTCATACTGACCTAAAGGA+GGG | 0.604930 | 5_3:+19610539 | None:intergenic |
| CAACGGCGGCGGAGAAAGTG+GGG | 0.607389 | 5_3:+19612878 | None:intergenic |
| ACAAGATACATAATTGTACC+TGG | 0.610808 | 5_3:+19610132 | None:intergenic |
| AAACAGACAACAAACGCTAA+CGG | 0.610851 | 5_3:-19610709 | Msa0804020:CDS |
| GCTGATATTCAACTACTGCA+TGG | 0.611060 | 5_3:-19610194 | Msa0804020:CDS |
| GAGGTTTCTAATGCACAAGA+AGG | 0.618108 | 5_3:-19612556 | Msa0804020:CDS |
| TCAGACGAGTTAATAGTTGG+CGG | 0.619467 | 5_3:+19610823 | None:intergenic |
| TACAGGTGATTCCACAGCAG+TGG | 0.621359 | 5_3:+19610307 | None:intergenic |
| TTCATACTGACCTAAAGGAG+GGG | 0.624269 | 5_3:+19610540 | None:intergenic |
| TCTTCATACTGACCTAAAGG+AGG | 0.626783 | 5_3:+19610538 | None:intergenic |
| CAACCACCGCATCCTCGCAG+TGG | 0.627904 | 5_3:+19612656 | None:intergenic |
| ATTTCAGCCAGCCACTGCTG+TGG | 0.635973 | 5_3:-19610318 | Msa0804020:CDS |
| GTCAATCTCTTACACACATG+AGG | 0.636067 | 5_3:-19610797 | Msa0804020:CDS |
| GTGATCAGTGGTTTCAACGG+CGG | 0.644192 | 5_3:+19612864 | None:intergenic |
| GGTAACCATGAATTAAGGTG+AGG | 0.652162 | 5_3:+19610766 | None:intergenic |
| TCAGAATTGAGAGAAGTGAG+TGG | 0.669570 | 5_3:-19610218 | Msa0804020:CDS |
| AGAATTGAGAGAAGTGAGTG+GGG | 0.684487 | 5_3:-19610216 | Msa0804020:CDS |
| TCGTCTTTAGCAGCACAATG+TGG | 0.685014 | 5_3:+19612355 | None:intergenic |
| TAATGCTTCAGATAATGATG+TGG | 0.688915 | 5_3:-19610159 | Msa0804020:CDS |
| GGGCTTGAAAGTGAGAAAGG+GGG | 0.707750 | 5_3:-19612505 | Msa0804020:CDS |
| ACATTGTGCTGCTAAAGACG+AGG | 0.713313 | 5_3:-19612353 | Msa0804020:CDS |
| CGGATGCAAAATCCACTGCG+AGG | 0.717160 | 5_3:-19612668 | Msa0804020:CDS |
| TGGAATCACCTGTAACTGCG+AGG | 0.722241 | 5_3:-19610298 | Msa0804020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTATTATGTTATTATTAA+TGG | - | chr5_3:19611930-19611949 | Msa0804020:intron | 10.0% |
| !! | TCTTTATAAATATTTACTAG+TGG | + | chr5_3:19611050-19611069 | None:intergenic | 15.0% |
| !! | TTACTACTATTATTCTTATT+AGG | - | chr5_3:19611180-19611199 | Msa0804020:intron | 15.0% |
| !!! | TTTTAGGAAAAATAAAATCA+GGG | + | chr5_3:19611457-19611476 | None:intergenic | 15.0% |
| !!! | TTTTTAGGAAAAATAAAATC+AGG | + | chr5_3:19611458-19611477 | None:intergenic | 15.0% |
| !!! | TCAAACTTTTGATTTTTTTT+AGG | + | chr5_3:19611473-19611492 | None:intergenic | 15.0% |
| !! | ACATATATTAAATGCTTTAA+AGG | + | chr5_3:19611636-19611655 | None:intergenic | 15.0% |
| !!! | TATATGTATGATTTGTTATA+CGG | - | chr5_3:19611649-19611668 | Msa0804020:intron | 15.0% |
| !!! | ATATTTTTTTTTCTCAATTG+TGG | - | chr5_3:19611695-19611714 | Msa0804020:intron | 15.0% |
| !! | GGAAGAATATAAGTAATATT+AGG | - | chr5_3:19610774-19610793 | Msa0804020:CDS | 20.0% |
| !! | AGTAATATTAGGAATAATAG+TGG | - | chr5_3:19610785-19610804 | Msa0804020:CDS | 20.0% |
| !!! | ATAATAGTGGTTCTAATATT+AGG | - | chr5_3:19610798-19610817 | Msa0804020:CDS | 20.0% |
| !!! | TAATAGTGGTTCTAATATTA+GGG | - | chr5_3:19610799-19610818 | Msa0804020:CDS | 20.0% |
| !! | TATAAATATTTACTAGTGGT+CGG | + | chr5_3:19611046-19611065 | None:intergenic | 20.0% |
| !! | TTTAGGAAAAATAAAATCAG+GGG | + | chr5_3:19611456-19611475 | None:intergenic | 20.0% |
| !!! | TTACGAATGTATTTTGAAAT+CGG | + | chr5_3:19611535-19611554 | None:intergenic | 20.0% |
| !! | AGAAAAATCAATAAAATGTG+CGG | + | chr5_3:19611793-19611812 | None:intergenic | 20.0% |
| !! | TAATATTCTTGTTCTTTATC+TGG | - | chr5_3:19612227-19612246 | Msa0804020:intron | 20.0% |
| !! | AATATTCTTGTTCTTTATCT+GGG | - | chr5_3:19612228-19612247 | Msa0804020:intron | 20.0% |
| !! | AGATCAATAGTAGAAAATTA+TGG | + | chr5_3:19612739-19612758 | None:intergenic | 20.0% |
| ! | AAGTTGAAATGGAATGAAAA+GGG | + | chr5_3:19610137-19610156 | None:intergenic | 25.0% |
| ! | AAAGTTGAAATGGAATGAAA+AGG | + | chr5_3:19610138-19610157 | None:intergenic | 25.0% |
| !! | GATGATTTAAGGAATTTTCA+TGG | + | chr5_3:19610204-19610223 | None:intergenic | 25.0% |
| !!! | AAGTTTGTGACTTTTGAAAT+GGG | + | chr5_3:19610263-19610282 | None:intergenic | 25.0% |
| !!! | AAAGTTTGTGACTTTTGAAA+TGG | + | chr5_3:19610264-19610283 | None:intergenic | 25.0% |
| !!! | ATAGGGTTATTTTGGTAATT+GGG | - | chr5_3:19610564-19610583 | Msa0804020:CDS | 25.0% |
| ! | ATAAATATTTACTAGTGGTC+GGG | + | chr5_3:19611045-19611064 | None:intergenic | 25.0% |
| ! | ACTATTATTCTTATTAGGCA+CGG | - | chr5_3:19611185-19611204 | Msa0804020:intron | 25.0% |
| ! | CTGATATGAAATTCAATGAT+AGG | - | chr5_3:19611325-19611344 | Msa0804020:intron | 25.0% |
| !!! | TATTTTGAAATCGGTAGTAT+CGG | + | chr5_3:19611526-19611545 | None:intergenic | 25.0% |
| ! | TCAAAATACATTCGTAAAAG+TGG | - | chr5_3:19611538-19611557 | Msa0804020:intron | 25.0% |
| !! | TGTTGTTGTTATGAGAAATT+TGG | - | chr5_3:19611875-19611894 | Msa0804020:intron | 25.0% |
| !! | GTTGTTGTTATGAGAAATTT+GGG | - | chr5_3:19611876-19611895 | Msa0804020:intron | 25.0% |
| !!! | CTTGTTTTCTTCCTATATTT+TGG | - | chr5_3:19611969-19611988 | Msa0804020:intron | 25.0% |
| ! | TGTATGTTATGTAAGTGAAT+TGG | - | chr5_3:19612013-19612032 | Msa0804020:intron | 25.0% |
| !!! | AACTTCAATTTTGAGATTGT+AGG | - | chr5_3:19612036-19612055 | Msa0804020:intron | 25.0% |
| !! | AGACATTCTTATTTATCACA+AGG | + | chr5_3:19612070-19612089 | None:intergenic | 25.0% |
| ! | GATAAATAAGAATGTCTAAG+TGG | - | chr5_3:19612073-19612092 | Msa0804020:intron | 25.0% |
| ! | ATAGACATTCAGTTAAATGA+CGG | + | chr5_3:19612136-19612155 | None:intergenic | 25.0% |
| ! | GCAGTTCTTGAAAATATATT+TGG | + | chr5_3:19612169-19612188 | None:intergenic | 25.0% |
| ATAGAGTGAGAAAGTTGAAA+TGG | + | chr5_3:19610148-19610167 | None:intergenic | 30.0% | |
| ! | AAGGAATTTTCATGGTGAAA+AGG | + | chr5_3:19610196-19610215 | None:intergenic | 30.0% |
| TTGTTGAAGTTAACGTTGAT+GGG | + | chr5_3:19610231-19610250 | None:intergenic | 30.0% | |
| TTTGTTGAAGTTAACGTTGA+TGG | + | chr5_3:19610232-19610251 | None:intergenic | 30.0% | |
| !!! | GATAGGGTTATTTTGGTAAT+TGG | - | chr5_3:19610563-19610582 | Msa0804020:CDS | 30.0% |
| ! | TGTTGTTAGGGTTTTTGATA+GGG | - | chr5_3:19610655-19610674 | Msa0804020:CDS | 30.0% |
| TGAAGTTTATGGGAAATTGT+TGG | - | chr5_3:19610712-19610731 | Msa0804020:CDS | 30.0% | |
| TATAAAAAAGGTTTGCACGA+TGG | - | chr5_3:19611098-19611117 | Msa0804020:intron | 30.0% | |
| GGTATGACATTGGAAAATAA+CGG | + | chr5_3:19611351-19611370 | None:intergenic | 30.0% | |
| AATCAAAAGTTTGAACCCTT+TGG | - | chr5_3:19611479-19611498 | Msa0804020:intron | 30.0% | |
| ATCAAAAGTTTGAACCCTTT+GGG | - | chr5_3:19611480-19611499 | Msa0804020:intron | 30.0% | |
| ! | ATTGTGGAATTCTTTGCTTT+TGG | - | chr5_3:19611711-19611730 | Msa0804020:intron | 30.0% |
| CTTACAAAAATCCTTGAGAA+AGG | - | chr5_3:19611811-19611830 | Msa0804020:intron | 30.0% | |
| TGATGTTCATGCCAAAATAT+AGG | + | chr5_3:19611983-19612002 | None:intergenic | 30.0% | |
| AAATAAGAATGTCTAAGTGG+AGG | - | chr5_3:19612076-19612095 | Msa0804020:intron | 30.0% | |
| !! | ATGACGGATCAGATTTAATA+TGG | + | chr5_3:19612120-19612139 | None:intergenic | 30.0% |
| ! | TTTTTCCTCACCTTAATTCA+TGG | - | chr5_3:19612417-19612436 | Msa0804020:CDS | 30.0% |
| TTGAAGGTAACCATGAATTA+AGG | + | chr5_3:19612430-19612449 | None:intergenic | 30.0% | |
| TAATTCATGGTTACCTTCAA+TGG | - | chr5_3:19612430-19612449 | Msa0804020:CDS | 30.0% | |
| ATAGATAAACCTTCCATTGA+AGG | + | chr5_3:19612446-19612465 | None:intergenic | 30.0% | |
| !!! | AGAACTTTTGAAATCCAAAC+TGG | - | chr5_3:19612608-19612627 | Msa0804020:CDS | 30.0% |
| AATTACTTGATTCAAGGTTC+TGG | + | chr5_3:19612786-19612805 | None:intergenic | 30.0% | |
| ! | CATTTATTGACTGGTAATGA+AGG | - | chr5_3:19612937-19612956 | Msa0804020:five_prime_UTR | 30.0% |
| ! | TTATCTGAAGCATTAGGAAT+TGG | + | chr5_3:19613024-19613043 | None:intergenic | 30.0% |
| ! | ACATCATTATCTGAAGCATT+AGG | + | chr5_3:19613030-19613049 | None:intergenic | 30.0% |
| TAATGCTTCAGATAATGATG+TGG | - | chr5_3:19613029-19613048 | Msa0804020:five_prime_UTR | 30.0% | |
| ACAAGATACATAATTGTACC+TGG | + | chr5_3:19613059-19613078 | None:intergenic | 30.0% | |
| ! | GGTGAAAAGGAGATTTGTTT+GGG | + | chr5_3:19610183-19610202 | None:intergenic | 35.0% |
| ! | TGGTGAAAAGGAGATTTGTT+TGG | + | chr5_3:19610184-19610203 | None:intergenic | 35.0% |
| !! | TGATGGGTTGTGATGATTTA+AGG | + | chr5_3:19610215-19610234 | None:intergenic | 35.0% |
| ! | GACTGATGATAGGGTTATTT+TGG | - | chr5_3:19610556-19610575 | Msa0804020:CDS | 35.0% |
| ! | GATCGAAAAGGGATTGTTTT+GGG | - | chr5_3:19610596-19610615 | Msa0804020:CDS | 35.0% |
| !! | GTGTTGTTAGGGTTTTTGAT+AGG | - | chr5_3:19610654-19610673 | Msa0804020:CDS | 35.0% |
| ! | TTAGGGTTTTTGATAGGGTT+TGG | - | chr5_3:19610660-19610679 | Msa0804020:CDS | 35.0% |
| ! | TAGGGTTTTTGATAGGGTTT+GGG | - | chr5_3:19610661-19610680 | Msa0804020:CDS | 35.0% |
| TTGGCACATAGTTCTCAAAT+TGG | - | chr5_3:19610731-19610750 | Msa0804020:CDS | 35.0% | |
| !! | TCTCAAATTGGTGCTATTGT+TGG | - | chr5_3:19610743-19610762 | Msa0804020:CDS | 35.0% |
| !! | ATTGGTGCTATTGTTGGAAA+AGG | - | chr5_3:19610749-19610768 | Msa0804020:CDS | 35.0% |
| ATTAGTTGTTCTCCTTTGTC+TGG | - | chr5_3:19610975-19610994 | Msa0804020:intron | 35.0% | |
| ! | CTATTTTACAATCGCATACG+TGG | + | chr5_3:19611298-19611317 | None:intergenic | 35.0% |
| ATTCGTAAAAGTGGCTTGAT+CGG | - | chr5_3:19611547-19611566 | Msa0804020:intron | 35.0% | |
| AAATCCTTGAGAAAGGAGAT+TGG | - | chr5_3:19611818-19611837 | Msa0804020:intron | 35.0% | |
| ATAACCAATCTCCTTTCTCA+AGG | + | chr5_3:19611825-19611844 | None:intergenic | 35.0% | |
| TACTTGACATGAATTCCACT+TGG | + | chr5_3:19611915-19611934 | None:intergenic | 35.0% | |
| !!! | TTTTGAGATTGTAGGTCTGT+AGG | - | chr5_3:19612044-19612063 | Msa0804020:intron | 35.0% |
| TCAGTTCAATGACAAGTGAA+TGG | + | chr5_3:19612202-19612221 | None:intergenic | 35.0% | |
| ! | TATCTGGGAACTTGTTTGAT+TGG | - | chr5_3:19612243-19612262 | Msa0804020:intron | 35.0% |
| TTGTTTGATTGGCAGATAAC+TGG | - | chr5_3:19612254-19612273 | Msa0804020:intron | 35.0% | |
| TTCAAAGATACTTTGCCCAT+CGG | + | chr5_3:19612341-19612360 | None:intergenic | 35.0% | |
| CTATCAGACGAGTTAATAGT+TGG | + | chr5_3:19612371-19612390 | None:intergenic | 35.0% | |
| CAACTATTAACTCGTCTGAT+AGG | - | chr5_3:19612369-19612388 | Msa0804020:CDS | 35.0% | |
| AAACAGACAACAAACGCTAA+CGG | - | chr5_3:19612479-19612498 | Msa0804020:CDS | 35.0% | |
| CAGGAGAATTACTTGATTCA+AGG | + | chr5_3:19612792-19612811 | None:intergenic | 35.0% | |
| AGCACGTTACATTTATTGAC+TGG | - | chr5_3:19612928-19612947 | Msa0804020:five_prime_UTR | 35.0% | |
| ! | TGGGGTCTTGCATTTTTGAA+CGG | + | chr5_3:19610295-19610314 | None:intergenic | 40.0% |
| ! | TTGTTCCTTTTCAACGACGA+CGG | + | chr5_3:19610374-19610393 | None:intergenic | 40.0% |
| !! | GTTTGAAAACGGGTCGTTTT+CGG | + | chr5_3:19610397-19610416 | None:intergenic | 40.0% |
| ! | ACCCGTTTTCAAACTTCTAC+CGG | - | chr5_3:19610403-19610422 | Msa0804020:CDS | 40.0% |
| ACCCGGTAGAAGTTTGAAAA+CGG | + | chr5_3:19610408-19610427 | None:intergenic | 40.0% | |
| TTTGGTCTGTCATTCGTCAA+CGG | - | chr5_3:19610442-19610461 | Msa0804020:intron | 40.0% | |
| ! | TTTGGTAATTGGGTCGATGT+CGG | - | chr5_3:19610574-19610593 | Msa0804020:CDS | 40.0% |
| ! | GGATCGAAAAGGGATTGTTT+TGG | - | chr5_3:19610595-19610614 | Msa0804020:CDS | 40.0% |
| !!! | AAGGGATTGTTTTGGGTGAT+AGG | - | chr5_3:19610603-19610622 | Msa0804020:CDS | 40.0% |
| !!! | AGGGATTGTTTTGGGTGATA+GGG | - | chr5_3:19610604-19610623 | Msa0804020:CDS | 40.0% |
| !! | TGTTTTGGGTGATAGGGAAA+TGG | - | chr5_3:19610610-19610629 | Msa0804020:CDS | 40.0% |
| GAGGTTTCTAATGCACAAGA+AGG | - | chr5_3:19610632-19610651 | Msa0804020:CDS | 40.0% | |
| !! | ATGCACAAGAAGGTGTTGTT+AGG | - | chr5_3:19610642-19610661 | Msa0804020:CDS | 40.0% |
| !! | TGCACAAGAAGGTGTTGTTA+GGG | - | chr5_3:19610643-19610662 | Msa0804020:CDS | 40.0% |
| ! | AGGGTTTTTGATAGGGTTTG+GGG | - | chr5_3:19610662-19610681 | Msa0804020:CDS | 40.0% |
| GGGGAAATGGTGAAGTTTAT+GGG | - | chr5_3:19610702-19610721 | Msa0804020:CDS | 40.0% | |
| ! | GTGCTATTGTTGGAAAAGGA+GGG | - | chr5_3:19610753-19610772 | Msa0804020:CDS | 40.0% |
| AAAAAAGGTTTGCACGATGG+AGG | - | chr5_3:19611101-19611120 | Msa0804020:intron | 40.0% | |
| TTAGGCACGGTAAATGCAAT+TGG | - | chr5_3:19611198-19611217 | Msa0804020:intron | 40.0% | |
| TTTCCAATGTCATACCACCT+AGG | - | chr5_3:19611355-19611374 | Msa0804020:intron | 40.0% | |
| TTCCAATGTCATACCACCTA+GGG | - | chr5_3:19611356-19611375 | Msa0804020:intron | 40.0% | |
| ! | TTTAAGTTCAACCCCCTCAA+CGG | + | chr5_3:19611394-19611413 | None:intergenic | 40.0% |
| ! | TTTGAAATCGGTAGTATCGG+TGG | + | chr5_3:19611523-19611542 | None:intergenic | 40.0% |
| TTCGTAAAAGTGGCTTGATC+GGG | - | chr5_3:19611548-19611567 | Msa0804020:intron | 40.0% | |
| ! | GCAGAATTGGGGATTTTCAT+TGG | - | chr5_3:19611570-19611589 | Msa0804020:intron | 40.0% |
| GGATAAAGATTCATGCCAAG+TGG | - | chr5_3:19611897-19611916 | Msa0804020:intron | 40.0% | |
| AATGTCTAAGTGGAGGTAAC+TGG | - | chr5_3:19612083-19612102 | Msa0804020:intron | 40.0% | |
| GCAGATAACTGGTGAAAGTT+TGG | - | chr5_3:19612265-19612284 | Msa0804020:intron | 40.0% | |
| TCAGACGAGTTAATAGTTGG+CGG | + | chr5_3:19612368-19612387 | None:intergenic | 40.0% | |
| GTCAATCTCTTACACACATG+AGG | - | chr5_3:19612391-19612410 | Msa0804020:CDS | 40.0% | |
| GGTAACCATGAATTAAGGTG+AGG | + | chr5_3:19612425-19612444 | None:intergenic | 40.0% | |
| TCATGGTTACCTTCAATGGA+AGG | - | chr5_3:19612434-19612453 | Msa0804020:CDS | 40.0% | |
| !! | AACTCTAGCCTTGACTCAAA+AGG | - | chr5_3:19612503-19612522 | Msa0804020:CDS | 40.0% |
| GTAGTGTGATCGGCAAAAAA+GGG | - | chr5_3:19612576-19612595 | Msa0804020:CDS | 40.0% | |
| !! | AGACAATAGAAGCACCAGTT+TGG | + | chr5_3:19612625-19612644 | None:intergenic | 40.0% |
| TTCATACTGACCTAAAGGAG+GGG | + | chr5_3:19612651-19612670 | None:intergenic | 40.0% | |
| CTTCATACTGACCTAAAGGA+GGG | + | chr5_3:19612652-19612671 | None:intergenic | 40.0% | |
| TCTTCATACTGACCTAAAGG+AGG | + | chr5_3:19612653-19612672 | None:intergenic | 40.0% | |
| !!! | CGTCACTATTTCTGCTTTTG+AGG | - | chr5_3:19612679-19612698 | Msa0804020:CDS | 40.0% |
| AGAATAACAGCATCTTGTGC+AGG | + | chr5_3:19612811-19612830 | None:intergenic | 40.0% | |
| GCTGAAGATCACATTCGAAA+TGG | - | chr5_3:19612847-19612866 | Msa0804020:CDS | 40.0% | |
| ATTAAAAGCCTCGCAGTTAC+AGG | + | chr5_3:19612901-19612920 | None:intergenic | 40.0% | |
| ! | ATTGACTGGTAATGAAGGTC+AGG | - | chr5_3:19612942-19612961 | Msa0804020:five_prime_UTR | 40.0% |
| TCAGAATTGAGAGAAGTGAG+TGG | - | chr5_3:19612970-19612989 | Msa0804020:five_prime_UTR | 40.0% | |
| CAGAATTGAGAGAAGTGAGT+GGG | - | chr5_3:19612971-19612990 | Msa0804020:five_prime_UTR | 40.0% | |
| AGAATTGAGAGAAGTGAGTG+GGG | - | chr5_3:19612972-19612991 | Msa0804020:five_prime_UTR | 40.0% | |
| GCTGATATTCAACTACTGCA+TGG | - | chr5_3:19612994-19613013 | Msa0804020:five_prime_UTR | 40.0% | |
| AGATAATGATGTGGTAGTCC+AGG | - | chr5_3:19613038-19613057 | Msa0804020:five_prime_UTR | 40.0% | |
| GTGGTGATCAGTGGTTTCAA+CGG | + | chr5_3:19610330-19610349 | None:intergenic | 45.0% | |
| CCCGGTAGAAGTTTGAAAAC+GGG | + | chr5_3:19610407-19610426 | None:intergenic | 45.0% | |
| ! | CCCGTTTTCAAACTTCTACC+GGG | - | chr5_3:19610404-19610423 | Msa0804020:CDS | 45.0% |
| !! | TCAACGGTTGGTGGTTTGAT+CGG | - | chr5_3:19610458-19610477 | Msa0804020:intron | 45.0% |
| GTGGTTTGATCGGAAGTTCA+GGG | - | chr5_3:19610468-19610487 | Msa0804020:intron | 45.0% | |
| TTTGGGTGATAGGGAAATGG+AGG | - | chr5_3:19610613-19610632 | Msa0804020:CDS | 45.0% | |
| ! | GGGTTTTTGATAGGGTTTGG+GGG | - | chr5_3:19610663-19610682 | Msa0804020:CDS | 45.0% |
| GAAAGTGAGAAAGGGGGAAA+TGG | - | chr5_3:19610689-19610708 | Msa0804020:CDS | 45.0% | |
| GGGGGAAATGGTGAAGTTTA+TGG | - | chr5_3:19610701-19610720 | Msa0804020:CDS | 45.0% | |
| !! | GGTGCTATTGTTGGAAAAGG+AGG | - | chr5_3:19610752-19610771 | Msa0804020:CDS | 45.0% |
| TCGTCTTTAGCAGCACAATG+TGG | + | chr5_3:19610836-19610855 | None:intergenic | 45.0% | |
| ! | ACATTGTGCTGCTAAAGACG+AGG | - | chr5_3:19610835-19610854 | Msa0804020:CDS | 45.0% |
| CTCCTTTGTCTGGATTGAAC+CGG | - | chr5_3:19610985-19611004 | Msa0804020:intron | 45.0% | |
| !! | AGCTCAGTTGGTTTGAGCTA+AGG | + | chr5_3:19611021-19611040 | None:intergenic | 45.0% |
| TCCAATGTCATACCACCTAG+GGG | - | chr5_3:19611357-19611376 | Msa0804020:intron | 45.0% | |
| TTAAGTTCAACCCCCTCAAC+GGG | + | chr5_3:19611393-19611412 | None:intergenic | 45.0% | |
| AAGTTTGAACCCTTTGGGCT+AGG | - | chr5_3:19611485-19611504 | Msa0804020:intron | 45.0% | |
| AGTTTGAACCCTTTGGGCTA+GGG | - | chr5_3:19611486-19611505 | Msa0804020:intron | 45.0% | |
| CTTCAAGATTGTCCACCGAT+GGG | - | chr5_3:19612323-19612342 | Msa0804020:intron | 45.0% | |
| AAAGATACTTTGCCCATCGG+TGG | + | chr5_3:19612338-19612357 | None:intergenic | 45.0% | |
| AGCCTTGACTCAAAAGGTTC+CGG | - | chr5_3:19612509-19612528 | Msa0804020:CDS | 45.0% | |
| TCTGAAAACAACTGCGTGTC+CGG | + | chr5_3:19612531-19612550 | None:intergenic | 45.0% | |
| CAGCTACGTTGTTAGAGCAA+AGG | + | chr5_3:19612556-19612575 | None:intergenic | 45.0% | |
| CTTTGCTCTAACAACGTAGC+TGG | - | chr5_3:19612554-19612573 | Msa0804020:CDS | 45.0% | |
| ! | AACGTAGCTGGTAGTGTGAT+CGG | - | chr5_3:19612566-19612585 | Msa0804020:CDS | 45.0% |
| GGTAGTGTGATCGGCAAAAA+AGG | - | chr5_3:19612575-19612594 | Msa0804020:CDS | 45.0% | |
| ATTGTCTTTGCCCCTCCTTT+AGG | - | chr5_3:19612638-19612657 | Msa0804020:CDS | 45.0% | |
| CGCTCTTCATACTGACCTAA+AGG | + | chr5_3:19612656-19612675 | None:intergenic | 45.0% | |
| !! | TATTATTACTATTAATTAAT+AGG | - | chr5_3:19610887-19610906 | Msa0804020:CDS | 5.0% |
| !!! | ATATTTATAAAGATATTTTA+TGG | - | chr5_3:19611057-19611076 | Msa0804020:intron | 5.0% |
| !!! | TTTTTTATACATAATTTTTA+AGG | + | chr5_3:19611087-19611106 | None:intergenic | 5.0% |
| !! | TTAAAAATTATGTATAAAAA+AGG | - | chr5_3:19611086-19611105 | Msa0804020:intron | 5.0% |
| GTGATCAGTGGTTTCAACGG+CGG | + | chr5_3:19610327-19610346 | None:intergenic | 50.0% | |
| ! | TTCCTTTTCAACGACGACGG+TGG | + | chr5_3:19610371-19610390 | None:intergenic | 50.0% |
| AAACGAAACGCGATCTGACC+CGG | + | chr5_3:19610425-19610444 | None:intergenic | 50.0% | |
| GTCTGTCATTCGTCAACGGT+TGG | - | chr5_3:19610446-19610465 | Msa0804020:intron | 50.0% | |
| TGTCATTCGTCAACGGTTGG+TGG | - | chr5_3:19610449-19610468 | Msa0804020:intron | 50.0% | |
| GGTGGTTTGATCGGAAGTTC+AGG | - | chr5_3:19610467-19610486 | Msa0804020:intron | 50.0% | |
| GGTCAATCGTTTCTCAGCTC+CGG | - | chr5_3:19610489-19610508 | Msa0804020:intron | 50.0% | |
| ! | TTTTGCATCCGGTTTCTCGC+CGG | + | chr5_3:19610511-19610530 | None:intergenic | 50.0% |
| !! | CTCGCAGTGGATTTTGCATC+CGG | + | chr5_3:19610522-19610541 | None:intergenic | 50.0% |
| CAAAATCCACTGCGAGGATG+CGG | - | chr5_3:19610526-19610545 | Msa0804020:CDS | 50.0% | |
| GGTGGTTGGGACTGATGATA+GGG | - | chr5_3:19610547-19610566 | Msa0804020:CDS | 50.0% | |
| GGTCGATGTCGGATCGAAAA+GGG | - | chr5_3:19610585-19610604 | Msa0804020:CDS | 50.0% | |
| TGGGGGCTTGAAAGTGAGAA+AGG | - | chr5_3:19610680-19610699 | Msa0804020:CDS | 50.0% | |
| GGGGGCTTGAAAGTGAGAAA+GGG | - | chr5_3:19610681-19610700 | Msa0804020:CDS | 50.0% | |
| GGGGCTTGAAAGTGAGAAAG+GGG | - | chr5_3:19610682-19610701 | Msa0804020:CDS | 50.0% | |
| GGGCTTGAAAGTGAGAAAGG+GGG | - | chr5_3:19610683-19610702 | Msa0804020:CDS | 50.0% | |
| TTAGCAGCACAATGTGGAGC+AGG | + | chr5_3:19610830-19610849 | None:intergenic | 50.0% | |
| GTCCGGTTCAATCCAGACAA+AGG | + | chr5_3:19610990-19611009 | None:intergenic | 50.0% | |
| GGTTTGAGCTAAGGAGTTCG+AGG | + | chr5_3:19611012-19611031 | None:intergenic | 50.0% | |
| AATGTCATACCACCTAGGGG+CGG | - | chr5_3:19611360-19611379 | Msa0804020:intron | 50.0% | |
| TAAGTTCAACCCCCTCAACG+GGG | + | chr5_3:19611392-19611411 | None:intergenic | 50.0% | |
| ATCCAAGACCCTAGCCCAAA+GGG | + | chr5_3:19611497-19611516 | None:intergenic | 50.0% | |
| !! | GAAATCGGTAGTATCGGTGG+CGG | + | chr5_3:19611520-19611539 | None:intergenic | 50.0% |
| TGGCTTGATCGGGCAGAATT+GGG | - | chr5_3:19611558-19611577 | Msa0804020:intron | 50.0% | |
| CCATCGGTGGACAATCTTGA+AGG | + | chr5_3:19612325-19612344 | None:intergenic | 50.0% | |
| CCTTCAAGATTGTCCACCGA+TGG | - | chr5_3:19612322-19612341 | Msa0804020:intron | 50.0% | |
| !! | GTCCGGAACCTTTTGAGTCA+AGG | + | chr5_3:19612514-19612533 | None:intergenic | 50.0% |
| TACAGGTGATTCCACAGCAG+TGG | + | chr5_3:19612884-19612903 | None:intergenic | 50.0% | |
| TGGAATCACCTGTAACTGCG+AGG | - | chr5_3:19612890-19612909 | Msa0804020:exon | 50.0% | |
| ATCAGTGGTTTCAACGGCGG+CGG | + | chr5_3:19610324-19610343 | None:intergenic | 55.0% | |
| ! | TTGTGGGTGGTGGTGATCAG+TGG | + | chr5_3:19610339-19610358 | None:intergenic | 55.0% |
| ! | CTTTTCAACGACGACGGTGG+TGG | + | chr5_3:19610368-19610387 | None:intergenic | 55.0% |
| CACCACCGTCGTCGTTGAAA+AGG | - | chr5_3:19610366-19610385 | Msa0804020:CDS | 55.0% | |
| GGGTCAGATCGCGTTTCGTT+TGG | - | chr5_3:19610424-19610443 | Msa0804020:intron | 55.0% | |
| CGGATGCAAAATCCACTGCG+AGG | - | chr5_3:19610520-19610539 | Msa0804020:CDS | 55.0% | |
| CGGTGGTTGGGACTGATGAT+AGG | - | chr5_3:19610546-19610565 | Msa0804020:CDS | 55.0% | |
| GGGTCGATGTCGGATCGAAA+AGG | - | chr5_3:19610584-19610603 | Msa0804020:CDS | 55.0% | |
| GAGCTAAGGAGTTCGAGGTC+CGG | + | chr5_3:19611007-19611026 | None:intergenic | 55.0% | |
| TAGTGGTCGGGTAGCTCAGT+TGG | + | chr5_3:19611033-19611052 | None:intergenic | 55.0% | |
| GCCCCTAGGTGGTATGACAT+TGG | + | chr5_3:19611361-19611380 | None:intergenic | 55.0% | |
| ! | AACCCTTTGGGCTAGGGTCT+TGG | - | chr5_3:19611492-19611511 | Msa0804020:intron | 55.0% |
| GATCCAAGACCCTAGCCCAA+AGG | + | chr5_3:19611498-19611517 | None:intergenic | 55.0% | |
| GTGGCTTGATCGGGCAGAAT+TGG | - | chr5_3:19611557-19611576 | Msa0804020:intron | 55.0% | |
| GGCTTGATCGGGCAGAATTG+GGG | - | chr5_3:19611559-19611578 | Msa0804020:intron | 55.0% | |
| ATTTCAGCCAGCCACTGCTG+TGG | - | chr5_3:19612870-19612889 | Msa0804020:CDS | 55.0% | |
| TCAACGGCGGCGGAGAAAGT+GGG | + | chr5_3:19610314-19610333 | None:intergenic | 60.0% | |
| TTCAACGGCGGCGGAGAAAG+TGG | + | chr5_3:19610315-19610334 | None:intergenic | 60.0% | |
| !! | ACGGTGGTGGTGGTGGTTGT+GGG | + | chr5_3:19610355-19610374 | None:intergenic | 60.0% |
| ! | TTCAACGACGACGGTGGTGG+TGG | + | chr5_3:19610365-19610384 | None:intergenic | 60.0% |
| TCTCAGCTCCGGCGAGAAAC+CGG | - | chr5_3:19610500-19610519 | Msa0804020:intron | 60.0% | |
| AATCCACTGCGAGGATGCGG+TGG | - | chr5_3:19610529-19610548 | Msa0804020:CDS | 60.0% | |
| ACTGCGAGGATGCGGTGGTT+GGG | - | chr5_3:19610534-19610553 | Msa0804020:CDS | 60.0% | |
| GGTGATTCCACAGCAGTGGC+TGG | + | chr5_3:19612880-19612899 | None:intergenic | 60.0% | |
| CAACGGCGGCGGAGAAAGTG+GGG | + | chr5_3:19610313-19610332 | None:intergenic | 65.0% | |
| !! | GTGGTGGTGGTTGTGGGTGG+TGG | + | chr5_3:19610349-19610368 | None:intergenic | 65.0% |
| !! | GTGGTGGTGGTGGTTGTGGG+TGG | + | chr5_3:19610352-19610371 | None:intergenic | 65.0% |
| !! | GACGGTGGTGGTGGTGGTTG+TGG | + | chr5_3:19610356-19610375 | None:intergenic | 65.0% |
| !! | AACGACGACGGTGGTGGTGG+TGG | + | chr5_3:19610362-19610381 | None:intergenic | 65.0% |
| CAACCACCGCATCCTCGCAG+TGG | + | chr5_3:19610535-19610554 | None:intergenic | 65.0% | |
| CACTGCGAGGATGCGGTGGT+TGG | - | chr5_3:19610533-19610552 | Msa0804020:CDS | 65.0% | |
| GTCATACCACCTAGGGGCGG+AGG | - | chr5_3:19611363-19611382 | Msa0804020:intron | 65.0% | |
| GGCGGAGGCAGCCCCGTTGA+GGG | - | chr5_3:19611378-19611397 | Msa0804020:intron | 75.0% | |
| GCGGAGGCAGCCCCGTTGAG+GGG | - | chr5_3:19611379-19611398 | Msa0804020:intron | 75.0% | |
| CGGAGGCAGCCCCGTTGAGG+GGG | - | chr5_3:19611380-19611399 | Msa0804020:intron | 75.0% | |
| ! | GGGCTGCCTCCGCCCCTAGG+TGG | + | chr5_3:19611372-19611391 | None:intergenic | 80.0% |
| ! | ACGGGGCTGCCTCCGCCCCT+AGG | + | chr5_3:19611375-19611394 | None:intergenic | 80.0% |
| ! | GGGCGGAGGCAGCCCCGTTG+AGG | - | chr5_3:19611377-19611396 | Msa0804020:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 19610124 | 19613086 | 19610124 | ID=Msa0804020;Name=Msa0804020 |
| chr5_3 | mRNA | 19610124 | 19613086 | 19610124 | ID=Msa0804020-mRNA-1;Parent=Msa0804020;Name=Msa0804020-mRNA-1;_AED=0.02;_eAED=0.02;_QI=178|1|0.66|1|1|1|3|0|433 |
| chr5_3 | exon | 19610124 | 19610423 | 19610124 | ID=Msa0804020-mRNA-1:exon:8038;Parent=Msa0804020-mRNA-1 |
| chr5_3 | exon | 19610510 | 19610941 | 19610510 | ID=Msa0804020-mRNA-1:exon:8037;Parent=Msa0804020-mRNA-1 |
| chr5_3 | exon | 19612342 | 19613086 | 19612342 | ID=Msa0804020-mRNA-1:exon:8036;Parent=Msa0804020-mRNA-1 |
| chr5_3 | five_prime_UTR | 19612909 | 19613086 | 19612909 | ID=Msa0804020-mRNA-1:five_prime_utr;Parent=Msa0804020-mRNA-1 |
| chr5_3 | CDS | 19612342 | 19612908 | 19612342 | ID=Msa0804020-mRNA-1:cds;Parent=Msa0804020-mRNA-1 |
| chr5_3 | CDS | 19610510 | 19610941 | 19610510 | ID=Msa0804020-mRNA-1:cds;Parent=Msa0804020-mRNA-1 |
| chr5_3 | CDS | 19610124 | 19610423 | 19610124 | ID=Msa0804020-mRNA-1:cds;Parent=Msa0804020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
