AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0132080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132080 MtrunA17_Chr1g0201561 97.260 146 3 1 4 148 30 175 6.32e-100 284
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132080 AT1G34000.1 66.667 147 44 4 4 148 29 172 5.58e-52 163

Find 49 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATCCTTCTCTCGAATTT+TGG 0.108201 1_3:+63048216 Msa0132080:CDS
GAATTGTGCATCATGGAAAT+TGG 0.209181 1_3:-63048412 None:intergenic
CAGAAGCCAAGTTCTGTTAT+TGG 0.242057 1_3:+63046125 Msa0132080:CDS
TCCATTGCTAATCTCATTCT+TGG 0.259463 1_3:-63046270 None:intergenic
AGCTTTATGCTGTTACTATA+AGG 0.314703 1_3:+63045988 Msa0132080:CDS
TTCTTCAGATGGGCAATGTT+TGG 0.321634 1_3:+63048135 Msa0132080:intron
CTCTCTCTCTTCTTTGTGGT+TGG 0.333066 1_3:+63045199 Msa0132080:five_prime_UTR
GGATCAGAGTCAAAGAATTC+TGG 0.378539 1_3:-63045264 None:intergenic
AAAGGTTGAGGAAGATTAGA+TGG 0.381685 1_3:-63046065 None:intergenic
GGCTTCTGTGGTTGTGGAGG+AGG 0.386924 1_3:-63046110 None:intergenic
AGAGGTGAAGGAAGAGAAAA+GGG 0.395917 1_3:-63045291 None:intergenic
AAGAGGTGAAGGAAGAGAAA+AGG 0.400057 1_3:-63045292 None:intergenic
AAGAGAGTAGAGGGAGGAGG+AGG 0.423853 1_3:+63045114 Msa0132080:five_prime_UTR
AATTGTGCATCATGGAAATT+GGG 0.429200 1_3:-63048411 None:intergenic
GTCTGAGCCCGTTGCAAACT+CGG 0.430085 1_3:-63048178 None:intergenic
TGTGGTTGGTAAGAGATGTT+TGG 0.436412 1_3:+63045213 Msa0132080:five_prime_UTR
GGTGAAGGTTTCAAAGGTTG+AGG 0.438534 1_3:-63046077 None:intergenic
TCATCTCCAATAACAGAACT+TGG 0.445908 1_3:-63046131 None:intergenic
GAACTTGGCTTCTGTGGTTG+TGG 0.451217 1_3:-63046116 None:intergenic
TTGCTAACCGAGTTTGCAAC+GGG 0.454057 1_3:+63048171 Msa0132080:CDS
GGAGGCTGAGAAGGAGGTGA+AGG 0.470690 1_3:-63046092 None:intergenic
GAAGGAAGAGAAAAGGGAAG+TGG 0.478043 1_3:-63045285 None:intergenic
ATAAGGAATGTTCAGAATGA+TGG 0.482112 1_3:+63046005 Msa0132080:CDS
AAACAGAATAAGAGAGTAGA+GGG 0.491921 1_3:+63045105 Msa0132080:five_prime_UTR
AATAAGAGAGTAGAGGGAGG+AGG 0.505306 1_3:+63045111 Msa0132080:five_prime_UTR
CTTGAACAAGCTGCAGATCA+AGG 0.507475 1_3:+63046227 Msa0132080:CDS
CTTGGCTTCTGTGGTTGTGG+AGG 0.510538 1_3:-63046113 None:intergenic
CCTTGTGGCCATTGTGGAAG+AGG 0.512962 1_3:-63045309 None:intergenic
TATAGTAACAGCATAAAGCT+TGG 0.513051 1_3:-63045985 None:intergenic
AAAGCAAGAATTGTGCATCA+TGG 0.527473 1_3:-63048419 None:intergenic
ATAACAGAACTTGGCTTCTG+TGG 0.527549 1_3:-63046122 None:intergenic
TGTGGAGGAGGCTGAGAAGG+AGG 0.535122 1_3:-63046098 None:intergenic
TTAGATGGTTCTTTCACAGA+AGG 0.540411 1_3:-63046050 None:intergenic
TCTTTCACAGAAGGAGCCGC+TGG 0.542093 1_3:-63046041 None:intergenic
GGTTGTGGAGGAGGCTGAGA+AGG 0.543573 1_3:-63046101 None:intergenic
GTTGCTAACCGAGTTTGCAA+CGG 0.550254 1_3:+63048170 Msa0132080:CDS
TTCCTTCACCTCTTCCACAA+TGG 0.552183 1_3:+63045301 Msa0132080:exon
CTATCCCAAAATTCGAGAGA+AGG 0.568832 1_3:-63048221 None:intergenic
CAGAATAAGAGAGTAGAGGG+AGG 0.577200 1_3:+63045108 Msa0132080:five_prime_UTR
GAAGGAGGTGAAGGTTTCAA+AGG 0.586451 1_3:-63046083 None:intergenic
GCCAAGAATGAGATTAGCAA+TGG 0.587710 1_3:+63046269 Msa0132080:CDS
AAAACAGAATAAGAGAGTAG+AGG 0.588580 1_3:+63045104 Msa0132080:five_prime_UTR
TGCATCATGGAAATTGGGAA+AGG 0.591648 1_3:-63048406 None:intergenic
ATAATACCTTGTGGCCATTG+TGG 0.596330 1_3:-63045315 None:intergenic
CCTCTTCCACAATGGCCACA+AGG 0.602749 1_3:+63045309 Msa0132080:exon
AGAATGAGATTAGCAATGGA+AGG 0.602777 1_3:+63046273 Msa0132080:CDS
GGCCATTGTGGAAGAGGTGA+AGG 0.627997 1_3:-63045303 None:intergenic
GGAGCCGCTGGTCTTCTGAG+AGG 0.691891 1_3:-63046029 None:intergenic
TGGTCCTCTCAGAAGACCAG+CGG 0.739227 1_3:+63046025 Msa0132080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAAAATAATAGAAAAA+GGG - chr1_3:63045351-63045370 None:intergenic 10.0%
!! AAGAAAAAAATAATAGAAAA+AGG - chr1_3:63045352-63045371 None:intergenic 10.0%
!! TTCAAATTAATATTTAAGAA+AGG - chr1_3:63046354-63046373 None:intergenic 10.0%
!!! TTTATTTTATCATTTGTTAT+AGG + chr1_3:63046574-63046593 Msa0132080:intron 10.0%
!!! AATTACAAATTATTTTCATT+TGG + chr1_3:63047559-63047578 Msa0132080:intron 10.0%
!!! ATTACAAATTATTTTCATTT+GGG + chr1_3:63047560-63047579 Msa0132080:intron 10.0%
!!! TTTAAAATGTAAAATCATTA+CGG - chr1_3:63048098-63048117 None:intergenic 10.0%
!!! AATACTATTTGATTTCTTTT+TGG + chr1_3:63045703-63045722 Msa0132080:intron 15.0%
!!! AATTCTTTCTATTTTTGATT+TGG + chr1_3:63046310-63046329 Msa0132080:intron 15.0%
!!! ATTCTTTCTATTTTTGATTT+GGG + chr1_3:63046311-63046330 Msa0132080:intron 15.0%
!! ATGATTAAAGCAATAAATTT+GGG - chr1_3:63046799-63046818 None:intergenic 15.0%
!! CAAAATAACTAAGTAAAAAT+AGG - chr1_3:63046940-63046959 None:intergenic 15.0%
!!! AATTTTAAAAAATGAAGGTA+CGG - chr1_3:63047138-63047157 None:intergenic 15.0%
!! AAAAATAATAGAAAAAGGGA+AGG - chr1_3:63045347-63045366 None:intergenic 20.0%
!!! ATATTTGTGCTGTTTTTTAT+TGG + chr1_3:63045494-63045513 Msa0132080:intron 20.0%
!!! TTTGATTTCTTTTTGGTTAT+TGG + chr1_3:63045710-63045729 Msa0132080:intron 20.0%
!!! NNNNNNNNGTATTTTCCCAA+GGG - chr1_3:63045843-63045862 None:intergenic 20.0%
!!! NNNNNNNNNGTATTTTCCCA+AGG - chr1_3:63045844-63045863 None:intergenic 20.0%
!!! TTCTTTCTATTTTTGATTTG+GGG + chr1_3:63046312-63046331 Msa0132080:intron 20.0%
!! CATGATTAAAGCAATAAATT+TGG - chr1_3:63046800-63046819 None:intergenic 20.0%
!! TAACTAAGTAAAAATAGGTA+TGG - chr1_3:63046935-63046954 None:intergenic 20.0%
!!! CATCAAAAGAAAGATAATTT+TGG - chr1_3:63047006-63047025 None:intergenic 20.0%
!!! ATTTTAAAAAATGAAGGTAC+GGG - chr1_3:63047137-63047156 None:intergenic 20.0%
!!! CGACAAATTTTAAAAAATGA+AGG - chr1_3:63047143-63047162 None:intergenic 20.0%
!!! TGTGCTTTTATATATGAATA+TGG + chr1_3:63048040-63048059 Msa0132080:intron 20.0%
!!! TTTGAGTTGATGATTAAAAC+AGG - chr1_3:63045398-63045417 None:intergenic 25.0%
!! TTACTGTGTTCTTTCTATTT+TGG + chr1_3:63045435-63045454 Msa0132080:intron 25.0%
!! GGTATTACTGTGATTAATTT+TGG + chr1_3:63045515-63045534 Msa0132080:intron 25.0%
!!! GTAGTATTTTTTGCAGATAT+TGG + chr1_3:63045543-63045562 Msa0132080:intron 25.0%
!! CTTTATTGCATATTTTGCTA+TGG + chr1_3:63045628-63045647 Msa0132080:intron 25.0%
! TGATTGTGTTATCTTTATGT+TGG + chr1_3:63046381-63046400 Msa0132080:intron 25.0%
!!! AAGAACTAGTTAGGTTTTTT+TGG + chr1_3:63046407-63046426 Msa0132080:intron 25.0%
!! TCATGATGTTATTGATTGAA+CGG + chr1_3:63046715-63046734 Msa0132080:intron 25.0%
! AAGTAAAAATAGGTATGGTT+CGG - chr1_3:63046930-63046949 None:intergenic 25.0%
!!! CTTAGTTATTTTGTCGTAAT+TGG + chr1_3:63046947-63046966 Msa0132080:intron 25.0%
!! TCTTTTGATGAAAATAGTAG+AGG + chr1_3:63047016-63047035 Msa0132080:intron 25.0%
!! CTTTTGATGAAAATAGTAGA+GGG + chr1_3:63047017-63047036 Msa0132080:intron 25.0%
!! TTTTGATGAAAATAGTAGAG+GGG + chr1_3:63047018-63047037 Msa0132080:intron 25.0%
!! TCAAGATGATTAAAGCATTT+GGG - chr1_3:63047257-63047276 None:intergenic 25.0%
!! ATCAAGATGATTAAAGCATT+TGG - chr1_3:63047258-63047277 None:intergenic 25.0%
!! TGCTTTAATCATCTTGATTT+TGG + chr1_3:63047260-63047279 Msa0132080:intron 25.0%
!! ACGAAACTTTTTGTCATTAA+GGG - chr1_3:63047357-63047376 None:intergenic 25.0%
! TAAAACATTCCAACTAATGT+AGG + chr1_3:63047401-63047420 Msa0132080:intron 25.0%
! AATTCAAATTACAGTGTGTT+GGG - chr1_3:63047536-63047555 None:intergenic 25.0%
! TAATTCAAATTACAGTGTGT+TGG - chr1_3:63047537-63047556 None:intergenic 25.0%
! ATTGATCAGATTTACAATTC+TGG - chr1_3:63047720-63047739 None:intergenic 25.0%
! GTATTATCTCTTGTTCAAAA+TGG + chr1_3:63047807-63047826 Msa0132080:intron 25.0%
!! TAAAAGCACATTAGAAACAA+AGG - chr1_3:63048030-63048049 None:intergenic 25.0%
AAAACAGAATAAGAGAGTAG+AGG + chr1_3:63045104-63045123 Msa0132080:five_prime_UTR 30.0%
AAACAGAATAAGAGAGTAGA+GGG + chr1_3:63045105-63045124 Msa0132080:five_prime_UTR 30.0%
!! AGGTTGATAATAATACCTTG+TGG - chr1_3:63045327-63045346 None:intergenic 30.0%
TATAGTAACAGCATAAAGCT+TGG - chr1_3:63045988-63046007 None:intergenic 30.0%
! AGCTTTATGCTGTTACTATA+AGG + chr1_3:63045988-63046007 Msa0132080:CDS 30.0%
ATAAGGAATGTTCAGAATGA+TGG + chr1_3:63046005-63046024 Msa0132080:CDS 30.0%
TTGGCAATGAATCCAAAAAA+GGG - chr1_3:63046254-63046273 None:intergenic 30.0%
!! AGTTAACTTGTTTGTCCAAT+TGG + chr1_3:63046649-63046668 Msa0132080:intron 30.0%
AAATTTGTCGTATTACGTAC+CGG + chr1_3:63047153-63047172 Msa0132080:intron 30.0%
! CGAAACTTTTTGTCATTAAG+GGG - chr1_3:63047356-63047375 None:intergenic 30.0%
! CACGAAACTTTTTGTCATTA+AGG - chr1_3:63047358-63047377 None:intergenic 30.0%
ATTCAAATTACAGTGTGTTG+GGG - chr1_3:63047535-63047554 None:intergenic 30.0%
TCCAGCAAACAGTAATTAAT+TGG + chr1_3:63047680-63047699 Msa0132080:intron 30.0%
ACCAATTAATTACTGTTTGC+TGG - chr1_3:63047684-63047703 None:intergenic 30.0%
ATCTGATCAATAAGTACATG+CGG + chr1_3:63047729-63047748 Msa0132080:intron 30.0%
! ATTCTTGTTTCTTCTTCAGA+TGG + chr1_3:63048124-63048143 Msa0132080:intron 30.0%
! TTCTTGTTTCTTCTTCAGAT+GGG + chr1_3:63048125-63048144 Msa0132080:intron 30.0%
!!! GAATTTTGGGATAGTAGATT+TGG + chr1_3:63048230-63048249 Msa0132080:CDS 30.0%
AATTGTGCATCATGGAAATT+GGG - chr1_3:63048414-63048433 None:intergenic 30.0%
!!! TTGGTTTTGAGTGTTCTTGT+TGG + chr1_3:63045232-63045251 Msa0132080:five_prime_UTR 35.0%
!!! TGGTTTTGAGTGTTCTTGTT+GGG + chr1_3:63045233-63045252 Msa0132080:five_prime_UTR 35.0%
TTAGATGGTTCTTTCACAGA+AGG - chr1_3:63046053-63046072 None:intergenic 35.0%
AAAGGTTGAGGAAGATTAGA+TGG - chr1_3:63046068-63046087 None:intergenic 35.0%
TCATCTCCAATAACAGAACT+TGG - chr1_3:63046134-63046153 None:intergenic 35.0%
GTTTCAGAGACAAAAAGCTA+AGG + chr1_3:63046175-63046194 Msa0132080:CDS 35.0%
ACAAAAAGCTAAGGAATTGC+AGG + chr1_3:63046184-63046203 Msa0132080:CDS 35.0%
CTTGGCAATGAATCCAAAAA+AGG - chr1_3:63046255-63046274 None:intergenic 35.0%
TCCATTGCTAATCTCATTCT+TGG - chr1_3:63046273-63046292 None:intergenic 35.0%
AGAATGAGATTAGCAATGGA+AGG + chr1_3:63046273-63046292 Msa0132080:CDS 35.0%
!! GATTTGGGGTTGATATAAGT+TGG + chr1_3:63046326-63046345 Msa0132080:intron 35.0%
! TGTTGGTAGAAGAACTAGTT+AGG + chr1_3:63046398-63046417 Msa0132080:intron 35.0%
AATAAGCGAAAAACAGCTCA+AGG - chr1_3:63046507-63046526 None:intergenic 35.0%
TAAAGTTGAACTGTTTCCCT+AGG - chr1_3:63046558-63046577 None:intergenic 35.0%
! TAACTAACTGGTTCTCCAAT+TGG - chr1_3:63046667-63046686 None:intergenic 35.0%
GAGACTCAAAACTAACTAAC+TGG - chr1_3:63046679-63046698 None:intergenic 35.0%
!!! TAGTTAGTTTTGAGTCTCTG+TGG + chr1_3:63046681-63046700 Msa0132080:intron 35.0%
ATTGGTGCAGCAAAAATGTA+CGG + chr1_3:63046965-63046984 Msa0132080:intron 35.0%
AAACCTATGATGCATAGGTA+CGG - chr1_3:63047206-63047225 None:intergenic 35.0%
TCCATCACTATCAAAACTAC+AGG - chr1_3:63047286-63047305 None:intergenic 35.0%
!!! TGTAGTTTTGATAGTGATGG+AGG + chr1_3:63047285-63047304 Msa0132080:intron 35.0%
! AACTTTTTGTCATTAAGGGG+AGG - chr1_3:63047353-63047372 None:intergenic 35.0%
CAATCTAGTCCTACATTAGT+TGG - chr1_3:63047413-63047432 None:intergenic 35.0%
AATGTAGGACTAGATTGTGT+TGG + chr1_3:63047416-63047435 Msa0132080:intron 35.0%
! TAGTTCTACGTTGATTAGAG+AGG + chr1_3:63047457-63047476 Msa0132080:intron 35.0%
ATTAGAGAGGAGCTAAATGT+CGG + chr1_3:63047470-63047489 Msa0132080:intron 35.0%
TCAACAAGATTGCTTCTGTA+TGG - chr1_3:63047587-63047606 None:intergenic 35.0%
TTGAAGGTTTCTACTGTCAT+AGG - chr1_3:63047632-63047651 None:intergenic 35.0%
TATGACAGTAGAAACCTTCA+AGG + chr1_3:63047631-63047650 Msa0132080:intron 35.0%
! CTTAAATTAGTCTGCCTTGA+AGG - chr1_3:63047648-63047667 None:intergenic 35.0%
AAATGGATACTAGAGTAACG+TGG + chr1_3:63047824-63047843 Msa0132080:intron 35.0%
!!! TCAAGTGATGTGGGATTTTT+TGG - chr1_3:63047871-63047890 None:intergenic 35.0%
! TTTGGTAAAAGGTGCATTGA+GGG - chr1_3:63047940-63047959 None:intergenic 35.0%
!!! CAATGTTTGGTTTTGCTGTT+GGG + chr1_3:63048148-63048167 Msa0132080:CDS 35.0%
! AAGATCCTTCTCTCGAATTT+TGG + chr1_3:63048216-63048235 Msa0132080:CDS 35.0%
! AGATCCTTCTCTCGAATTTT+GGG + chr1_3:63048217-63048236 Msa0132080:CDS 35.0%
GAATTGTGCATCATGGAAAT+TGG - chr1_3:63048415-63048434 None:intergenic 35.0%
AAAGCAAGAATTGTGCATCA+TGG - chr1_3:63048422-63048441 None:intergenic 35.0%
!! TGTGGTTGGTAAGAGATGTT+TGG + chr1_3:63045213-63045232 Msa0132080:five_prime_UTR 40.0%
GGATCAGAGTCAAAGAATTC+TGG - chr1_3:63045267-63045286 None:intergenic 40.0%
AGAGGTGAAGGAAGAGAAAA+GGG - chr1_3:63045294-63045313 None:intergenic 40.0%
AAGAGGTGAAGGAAGAGAAA+AGG - chr1_3:63045295-63045314 None:intergenic 40.0%
ATAATACCTTGTGGCCATTG+TGG - chr1_3:63045318-63045337 None:intergenic 40.0%
ATAACAGAACTTGGCTTCTG+TGG - chr1_3:63046125-63046144 None:intergenic 40.0%
CAGAAGCCAAGTTCTGTTAT+TGG + chr1_3:63046125-63046144 Msa0132080:CDS 40.0%
GCCAAGAATGAGATTAGCAA+TGG + chr1_3:63046269-63046288 Msa0132080:CDS 40.0%
AATCTGTATCAGTTACGCTG+TGG + chr1_3:63046738-63046757 Msa0132080:intron 40.0%
TTGGTGCAGCAAAAATGTAC+GGG + chr1_3:63046966-63046985 Msa0132080:intron 40.0%
AACCTATGATGCATAGGTAC+GGG - chr1_3:63047205-63047224 None:intergenic 40.0%
ACGCTAAACCTATGATGCAT+AGG - chr1_3:63047211-63047230 None:intergenic 40.0%
!!! GCCTGTAGTTTTGATAGTGA+TGG + chr1_3:63047282-63047301 Msa0132080:intron 40.0%
TTTGTCATTAAGGGGAGGAA+GGG - chr1_3:63047348-63047367 None:intergenic 40.0%
! TTTTGTCATTAAGGGGAGGA+AGG - chr1_3:63047349-63047368 None:intergenic 40.0%
GGAGAGTTGGAAGTAACAAA+GGG - chr1_3:63047504-63047523 None:intergenic 40.0%
ACTGTCATAGGAAAGCTCTA+AGG - chr1_3:63047620-63047639 None:intergenic 40.0%
GATACTAGAGTAACGTGGAA+TGG + chr1_3:63047829-63047848 Msa0132080:intron 40.0%
!!! TGTGGGATTTTTTGGTGGAT+CGG - chr1_3:63047863-63047882 None:intergenic 40.0%
!!! AGTGATGTGGGATTTTTTGG+TGG - chr1_3:63047868-63047887 None:intergenic 40.0%
! CTTTGGTAAAAGGTGCATTG+AGG - chr1_3:63047941-63047960 None:intergenic 40.0%
! CTCAATGCACCTTTTACCAA+AGG + chr1_3:63047939-63047958 Msa0132080:intron 40.0%
CGACTTTGTCCTTTGGTAAA+AGG - chr1_3:63047951-63047970 None:intergenic 40.0%
GCTCAAAACCGACATTATCT+CGG + chr1_3:63047987-63048006 Msa0132080:intron 40.0%
TTCTTCAGATGGGCAATGTT+TGG + chr1_3:63048135-63048154 Msa0132080:intron 40.0%
!!! GCAATGTTTGGTTTTGCTGT+TGG + chr1_3:63048147-63048166 Msa0132080:CDS 40.0%
CTATCCCAAAATTCGAGAGA+AGG - chr1_3:63048224-63048243 None:intergenic 40.0%
TGCATCATGGAAATTGGGAA+AGG - chr1_3:63048409-63048428 None:intergenic 40.0%
CAGAATAAGAGAGTAGAGGG+AGG + chr1_3:63045108-63045127 Msa0132080:five_prime_UTR 45.0%
AATAAGAGAGTAGAGGGAGG+AGG + chr1_3:63045111-63045130 Msa0132080:five_prime_UTR 45.0%
GAGAGAGAGAGAGAGAAGAA+GGG - chr1_3:63045186-63045205 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAAGA+AGG - chr1_3:63045187-63045206 None:intergenic 45.0%
CTCTCTCTCTCTCTTCTTTG+TGG + chr1_3:63045195-63045214 Msa0132080:five_prime_UTR 45.0%
CTCTCTCTCTTCTTTGTGGT+TGG + chr1_3:63045199-63045218 Msa0132080:five_prime_UTR 45.0%
GAAGGAAGAGAAAAGGGAAG+TGG - chr1_3:63045288-63045307 None:intergenic 45.0%
TTCCTTCACCTCTTCCACAA+TGG + chr1_3:63045301-63045320 Msa0132080:exon 45.0%
AGCTTGTGAGTGATCTACTC+AGG + chr1_3:63045791-63045810 Msa0132080:intron 45.0%
TTGTGAGTGATCTACTCAGG+TGG + chr1_3:63045794-63045813 Msa0132080:intron 45.0%
GGTGAAGGTTTCAAAGGTTG+AGG - chr1_3:63046080-63046099 None:intergenic 45.0%
GAAGGAGGTGAAGGTTTCAA+AGG - chr1_3:63046086-63046105 None:intergenic 45.0%
CTTGAACAAGCTGCAGATCA+AGG + chr1_3:63046227-63046246 Msa0132080:CDS 45.0%
!!! GCAGATCAAGGTCCCTTTTT+TGG + chr1_3:63046239-63046258 Msa0132080:CDS 45.0%
CCTAGAGGCTAGAAAGCTTA+TGG - chr1_3:63046531-63046550 None:intergenic 45.0%
! CCATAAGCTTTCTAGCCTCT+AGG + chr1_3:63046528-63046547 Msa0132080:intron 45.0%
!! TCTAGCCTCTAGGATAACCT+AGG + chr1_3:63046538-63046557 Msa0132080:intron 45.0%
!! CTAGCCTCTAGGATAACCTA+GGG + chr1_3:63046539-63046558 Msa0132080:intron 45.0%
GTTTCCCTAGGTTATCCTAG+AGG - chr1_3:63046546-63046565 None:intergenic 45.0%
!! AGTTTAGCGCTCTGAAGCAT+GGG + chr1_3:63046828-63046847 Msa0132080:intron 45.0%
AAGCATGGGTACTCCAAACA+CGG + chr1_3:63046842-63046861 Msa0132080:intron 45.0%
! AAATGAAGGTACGGGTACGT+TGG - chr1_3:63047129-63047148 None:intergenic 45.0%
ATGATGCATAGGTACGGGTA+CGG - chr1_3:63047200-63047219 None:intergenic 45.0%
TACCCGTACCTATGCATCAT+AGG + chr1_3:63047200-63047219 Msa0132080:intron 45.0%
GGGAGAGTTGGAAGTAACAA+AGG - chr1_3:63047505-63047524 None:intergenic 45.0%
! TGTTACTTCCAACTCTCCCT+CGG + chr1_3:63047506-63047525 Msa0132080:intron 45.0%
CCTCGATTCTCAAGTGATGT+GGG - chr1_3:63047880-63047899 None:intergenic 45.0%
!! CCGCTTTTCCGAGATAATGT+CGG - chr1_3:63047998-63048017 None:intergenic 45.0%
CCGACATTATCTCGGAAAAG+CGG + chr1_3:63047995-63048014 Msa0132080:intron 45.0%
GTTGCTAACCGAGTTTGCAA+CGG + chr1_3:63048170-63048189 Msa0132080:CDS 45.0%
TTGCTAACCGAGTTTGCAAC+GGG + chr1_3:63048171-63048190 Msa0132080:CDS 45.0%
TGAGTGATCTACTCAGGTGG+TGG + chr1_3:63045797-63045816 Msa0132080:intron 50.0%
!! TACTCAGGTGGTGGTTTTGC+CGG + chr1_3:63045806-63045825 Msa0132080:intron 50.0%
CCCAAGGGATATTCTTCCAC+CGG - chr1_3:63045828-63045847 None:intergenic 50.0%
CCGGTGGAAGAATATCCCTT+GGG + chr1_3:63045825-63045844 Msa0132080:intron 50.0%
GAACTTGGCTTCTGTGGTTG+TGG - chr1_3:63046119-63046138 None:intergenic 50.0%
!! GAGTTTAGCGCTCTGAAGCA+TGG + chr1_3:63046827-63046846 Msa0132080:intron 50.0%
! CTCCAAACACGGAGAAGTAC+CGG + chr1_3:63046853-63046872 Msa0132080:intron 50.0%
TACCGGTACTTCTCCGTGTT+TGG - chr1_3:63046858-63046877 None:intergenic 50.0%
GGAGCTAAATGTCGGAGTAC+TGG + chr1_3:63047478-63047497 Msa0132080:intron 50.0%
CCCACATCACTTGAGAATCG+AGG + chr1_3:63047877-63047896 Msa0132080:intron 50.0%
GCCTCGATTCTCAAGTGATG+TGG - chr1_3:63047881-63047900 None:intergenic 50.0%
GCACTCACGACTTTGTCCTT+TGG - chr1_3:63047958-63047977 None:intergenic 50.0%
!! AAGTCGTGAGTGCTGACACA+AGG + chr1_3:63047965-63047984 Msa0132080:intron 50.0%
AAGAGAGTAGAGGGAGGAGG+AGG + chr1_3:63045114-63045133 Msa0132080:five_prime_UTR 55.0%
GGCCATTGTGGAAGAGGTGA+AGG - chr1_3:63045306-63045325 None:intergenic 55.0%
CCTTGTGGCCATTGTGGAAG+AGG - chr1_3:63045312-63045331 None:intergenic 55.0%
CCTCTTCCACAATGGCCACA+AGG + chr1_3:63045309-63045328 Msa0132080:exon 55.0%
GCCGGTGGAAGAATATCCCT+TGG + chr1_3:63045824-63045843 Msa0132080:intron 55.0%
TGGTCCTCTCAGAAGACCAG+CGG + chr1_3:63046025-63046044 Msa0132080:CDS 55.0%
TCTTTCACAGAAGGAGCCGC+TGG - chr1_3:63046044-63046063 None:intergenic 55.0%
CTTGGCTTCTGTGGTTGTGG+AGG - chr1_3:63046116-63046135 None:intergenic 55.0%
!! ACACGGAGAAGTACCGGTAC+CGG + chr1_3:63046859-63046878 Msa0132080:intron 55.0%
TACCATACGCGTACCCGGTA+CGG - chr1_3:63046893-63046912 None:intergenic 55.0%
ACGAGTACCATACGCGTACC+CGG - chr1_3:63046898-63046917 None:intergenic 55.0%
TACGGGTACGGTACCTGGTA+CGG - chr1_3:63047188-63047207 None:intergenic 55.0%
ATAGGTACGGGTACGGTACC+TGG - chr1_3:63047193-63047212 None:intergenic 55.0%
GTCTGAGCCCGTTGCAAACT+CGG - chr1_3:63048181-63048200 None:intergenic 55.0%
!! TCAGGTGGTGGTTTTGCCGG+TGG + chr1_3:63045809-63045828 Msa0132080:intron 60.0%
GGAGGCTGAGAAGGAGGTGA+AGG - chr1_3:63046095-63046114 None:intergenic 60.0%
TGTGGAGGAGGCTGAGAAGG+AGG - chr1_3:63046101-63046120 None:intergenic 60.0%
GGTTGTGGAGGAGGCTGAGA+AGG - chr1_3:63046104-63046123 None:intergenic 60.0%
GGCTTCTGTGGTTGTGGAGG+AGG - chr1_3:63046113-63046132 None:intergenic 60.0%
!! CACGGAGAAGTACCGGTACC+GGG + chr1_3:63046860-63046879 Msa0132080:intron 60.0%
ACCATACGCGTACCCGGTAC+GGG - chr1_3:63046892-63046911 None:intergenic 60.0%
!! CCTGGTACGGGTACTGGTAC+CGG - chr1_3:63047175-63047194 None:intergenic 60.0%
ACGGTACCTGGTACGGGTAC+TGG - chr1_3:63047181-63047200 None:intergenic 60.0%
ACGGGTACGGTACCTGGTAC+GGG - chr1_3:63047187-63047206 None:intergenic 60.0%
CAGTGTGTTGGGGAGTCCGA+GGG - chr1_3:63047525-63047544 None:intergenic 60.0%
ACAGTGTGTTGGGGAGTCCG+AGG - chr1_3:63047526-63047545 None:intergenic 60.0%
!! GGAGCCGCTGGTCTTCTGAG+AGG - chr1_3:63046032-63046051 None:intergenic 65.0%
TACGGGTGCGTACCCGGTAC+CGG - chr1_3:63046875-63046894 None:intergenic 65.0%
TACCGGGTACGCACCCGTAC+CGG + chr1_3:63046876-63046895 Msa0132080:intron 65.0%
ACCCGTACCGGGTACGCGTA+TGG + chr1_3:63046888-63046907 Msa0132080:intron 65.0%
CCGGTACCAGTACCCGTACC+AGG + chr1_3:63047172-63047191 Msa0132080:intron 65.0%
TGGGGAGTCCGAGGGAGAGT+TGG - chr1_3:63047517-63047536 None:intergenic 65.0%
ACCGGGTACGCACCCGTACC+GGG + chr1_3:63046877-63046896 Msa0132080:intron 70.0%
ACCCGGTACGGGTGCGTACC+CGG - chr1_3:63046881-63046900 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 63045097 63048459 63045097 ID=Msa0132080;Name=Msa0132080
chr1_3 mRNA 63045097 63048459 63045097 ID=Msa0132080-mRNA-1;Parent=Msa0132080;Name=Msa0132080-mRNA-1;_AED=0.04;_eAED=0.04;_QI=223|0.5|0.66|1|1|1|3|202|148
chr1_3 exon 63045097 63045330 63045097 ID=Msa0132080-mRNA-1:exon:21088;Parent=Msa0132080-mRNA-1
chr1_3 exon 63045974 63046294 63045974 ID=Msa0132080-mRNA-1:exon:21089;Parent=Msa0132080-mRNA-1
chr1_3 exon 63048143 63048459 63048143 ID=Msa0132080-mRNA-1:exon:21090;Parent=Msa0132080-mRNA-1
chr1_3 five_prime_UTR 63045097 63045319 63045097 ID=Msa0132080-mRNA-1:five_prime_utr;Parent=Msa0132080-mRNA-1
chr1_3 CDS 63045320 63045330 63045320 ID=Msa0132080-mRNA-1:cds;Parent=Msa0132080-mRNA-1
chr1_3 CDS 63045974 63046294 63045974 ID=Msa0132080-mRNA-1:cds;Parent=Msa0132080-mRNA-1
chr1_3 CDS 63048143 63048257 63048143 ID=Msa0132080-mRNA-1:cds;Parent=Msa0132080-mRNA-1
chr1_3 three_prime_UTR 63048258 63048459 63048258 ID=Msa0132080-mRNA-1:three_prime_utr;Parent=Msa0132080-mRNA-1
Gene Sequence

>Msa0132080

ATGGCCACAAGATTCTCTTCTTCCAAGCTTTATGCTGTTACTATAAGGAATGTTCAGAATGATGGTCCTCTCAGAAGACCAGCGGCTCCTTCTGTGAAAGAACCATCTAATCTTCCTCAACCTTTGAAACCTTCACCTCCTTCTCAGCCTCCTCCACAACCACAGAAGCCAAGTTCTGTTATTGGAGATGATAAAAGCGTTGTTTCATTAGAGTTTCAGAGACAAAAAGCTAAGGAATTGCAGGAATATTTCAAAAAGAAGAAGCTTGAACAAGCTGCAGATCAAGGTCCCTTTTTTGGATTCATTGCCAAGAATGAGATTAGCAATGGAAGATGGGCAATGTTTGGTTTTGCTGTTGGGTTGCTAACCGAGTTTGCAACGGGCTCAGACTTTGTTGATCAAGTGAAGATCCTTCTCTCGAATTTTGGGATAGTAGATTTGGATTGA

Protein sequence

>Msa0132080

MATRFSSSKLYAVTIRNVQNDGPLRRPAAPSVKEPSNLPQPLKPSPPSQPPPQPQKPSSVIGDDKSVVSLEFQRQKAKELQEYFKKKKLEQAADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEFATGSDFVDQVKILLSNFGIVDLD*