AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0804170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0804170 MtrunA17_Chr5g0412151 97.885 520 5 4 1 517 1 517 0.0 1046
Msa0804170 MtrunA17_Chr2g0328971 52.998 417 131 13 11 419 4 363 5.07e-126 378
Msa0804170 MtrunA17_Chr4g0072291 77.982 218 44 2 216 429 148 365 1.23e-121 366
Msa0804170 MtrunA17_Chr7g0249621 62.752 298 77 6 201 464 222 519 2.70e-119 366
Msa0804170 MtrunA17_Chr4g0032631 51.651 424 128 14 10 419 2 362 1.27e-118 360
Msa0804170 MtrunA17_Chr8g0343851 52.825 354 124 6 86 409 91 431 3.12e-111 342
Msa0804170 MtrunA17_Chr1g0152161 47.430 428 152 12 83 461 126 529 1.08e-110 343
Msa0804170 MtrunA17_Chr3g0135161 77.949 195 42 1 218 411 301 495 2.01e-108 337
Msa0804170 MtrunA17_Chr4g0054351 67.073 246 65 4 218 459 301 534 3.72e-106 331
Msa0804170 MtrunA17_Chr5g0400871 71.226 212 50 2 223 431 245 448 1.11e-103 321
Msa0804170 MtrunA17_Chr8g0367311 63.529 255 67 5 264 516 22 252 2.63e-100 302
Msa0804170 MtrunA17_Chr4g0073521 71.084 166 48 0 226 391 46 211 1.68e-82 260
Msa0804170 MtrunA17_Chr8g0355191 68.675 166 52 0 226 391 54 219 2.02e-77 249
Msa0804170 MtrunA17_Chr7g0216601 65.680 169 55 1 226 391 64 232 8.70e-75 241
Msa0804170 MtrunA17_Chr6g0452911 63.743 171 52 1 231 391 65 235 4.03e-73 237
Msa0804170 MtrunA17_Chr4g0002011 69.231 169 49 1 226 391 35 203 5.30e-72 232
Msa0804170 MtrunA17_Chr8g0355181 67.470 166 54 0 226 391 55 220 2.83e-71 232
Msa0804170 MtrunA17_Chr8g0362541 62.222 180 54 1 226 391 68 247 4.11e-66 219
Msa0804170 MtrunA17_Chr7g0257361 51.977 177 74 3 178 351 11 179 1.02e-43 160
Msa0804170 MtrunA17_Chr2g0305821 65.254 118 41 0 222 339 42 159 1.03e-43 152
Msa0804170 MtrunA17_Chr7g0263581 40.602 266 131 7 135 394 51 295 1.33e-40 152
Msa0804170 MtrunA17_Chr4g0053181 52.096 167 66 4 231 394 177 332 2.54e-40 152
Msa0804170 MtrunA17_Chr5g0401891 51.176 170 75 3 231 400 153 314 8.65e-40 150
Msa0804170 MtrunA17_Chr4g0030191 43.304 224 113 5 191 414 96 305 3.85e-39 148
Msa0804170 MtrunA17_Chr2g0325911 43.455 191 84 5 204 394 109 275 1.94e-30 123
Msa0804170 MtrunA17_Chr8g0367321 56.311 103 35 4 165 265 99 193 1.97e-24 100
Msa0804170 MtrunA17_Chr2g0305831 71.186 59 17 0 333 391 1 59 3.24e-23 97.8
Msa0804170 MtrunA17_Chr3g0126151 47.368 95 49 1 275 369 47 140 8.73e-22 91.7
Msa0804170 MtrunA17_Chr1g0170761 39.837 123 60 4 227 346 134 245 3.69e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0804170 AT5G10510.6 52.961 608 154 22 12 517 7 584 3.20e-161 471
Msa0804170 AT5G10510.4 52.961 608 154 22 12 517 7 584 3.20e-161 471
Msa0804170 AT5G10510.3 51.115 628 155 22 12 517 7 604 1.11e-156 459
Msa0804170 AT5G10510.2 56.405 523 130 16 73 517 41 543 2.29e-154 451
Msa0804170 AT5G10510.1 52.349 596 158 21 18 517 4 569 8.83e-154 451
Msa0804170 AT5G65510.2 52.468 547 164 15 12 517 7 498 1.83e-153 447
Msa0804170 AT5G65510.1 52.468 547 164 15 12 517 7 498 1.83e-153 447
Msa0804170 AT5G10510.7 56.084 526 130 17 73 517 41 546 2.81e-152 446
Msa0804170 AT5G10510.5 56.084 526 130 17 73 517 41 546 2.81e-152 446
Msa0804170 AT5G65510.4 56.624 468 121 12 86 517 19 440 1.51e-148 433
Msa0804170 AT1G51190.1 51.887 424 148 15 11 419 4 386 2.94e-124 375
Msa0804170 AT3G20840.1 52.506 419 144 12 11 419 4 377 1.84e-122 371
Msa0804170 AT5G57390.2 79.512 205 39 1 208 409 63 267 1.31e-118 356
Msa0804170 AT5G57390.1 79.512 205 39 1 208 409 181 385 2.15e-117 357
Msa0804170 AT5G17430.2 67.829 258 77 3 203 456 123 378 4.32e-117 355
Msa0804170 AT5G17430.1 67.829 258 77 3 203 456 185 440 9.32e-117 357
Msa0804170 AT5G65510.3 59.344 305 85 6 83 361 16 307 7.27e-108 324
Msa0804170 AT5G65510.3 35.644 101 50 2 302 394 153 246 2.25e-11 65.5
Msa0804170 AT1G72570.1 74.500 200 48 1 207 403 200 399 6.93e-106 323
Msa0804170 AT4G37750.1 60.223 269 102 2 187 452 240 506 4.72e-105 325
Msa0804170 AT3G54320.3 60.591 203 73 3 226 422 61 262 2.46e-70 231
Msa0804170 AT3G54320.1 60.591 203 73 3 226 422 61 262 2.91e-70 231
Msa0804170 AT1G79700.2 67.456 169 52 1 226 391 48 216 2.36e-61 204
Msa0804170 AT1G16060.1 62.032 187 68 1 208 391 36 222 2.45e-61 205
Msa0804170 AT1G79700.1 63.314 169 49 2 226 391 48 206 1.91e-53 183
Msa0804170 AT3G54320.4 59.877 162 61 2 264 422 36 196 6.40e-52 181
Msa0804170 AT3G54320.5 59.877 162 61 2 264 422 36 196 6.40e-52 181
Msa0804170 AT1G79700.4 67.969 128 41 0 264 391 7 134 2.06e-42 151
Msa0804170 AT1G79700.3 67.969 128 41 0 264 391 13 140 2.11e-42 151
Msa0804170 AT2G41710.1 50.270 185 63 5 217 381 57 232 2.67e-42 156
Msa0804170 AT4G36920.1 46.377 207 103 3 194 400 95 293 3.51e-42 156
Msa0804170 AT4G36920.2 46.377 207 103 3 194 400 95 293 3.51e-42 156
Msa0804170 AT2G41710.4 50.270 185 63 5 217 381 57 232 5.53e-42 156
Msa0804170 AT1G16060.3 67.188 128 42 0 264 391 25 152 5.56e-41 149
Msa0804170 AT2G41710.2 48.947 190 63 6 217 381 57 237 6.52e-40 150
Msa0804170 AT5G67180.2 49.112 169 78 3 231 399 97 257 5.54e-39 144
Msa0804170 AT5G67180.3 49.112 169 78 3 231 399 97 257 6.79e-39 143
Msa0804170 AT5G67180.1 49.419 172 73 4 231 399 97 257 2.12e-38 144
Msa0804170 AT2G28550.3 50.000 164 74 3 231 394 154 309 5.07e-38 145
Msa0804170 AT2G41710.3 42.273 220 63 6 217 381 57 267 1.48e-35 138
Msa0804170 AT3G54320.2 57.377 122 48 2 304 422 1 121 1.87e-31 123
Msa0804170 AT2G28550.4 39.062 192 108 4 231 422 154 336 7.38e-31 122
Msa0804170 AT1G16060.2 71.591 88 25 0 304 391 1 88 8.97e-31 119
Msa0804170 AT1G16060.4 71.591 88 25 0 304 391 1 88 8.97e-31 119
Msa0804170 AT1G16060.6 71.591 88 25 0 304 391 1 88 8.97e-31 119
Msa0804170 AT1G16060.5 71.591 88 25 0 304 391 1 88 8.97e-31 119
Msa0804170 AT5G67180.4 47.552 143 67 3 231 373 97 231 1.18e-29 117
Msa0804170 AT2G28550.1 45.122 164 67 4 231 394 154 294 1.54e-29 121
Msa0804170 AT2G28550.2 47.619 126 52 4 231 353 154 268 4.34e-25 105
Msa0804170 AT2G28550.6 47.619 126 52 4 231 353 154 268 4.34e-25 105
Msa0804170 AT2G28550.5 45.802 131 55 2 264 394 14 128 2.18e-22 97.8
Msa0804170 AT2G39250.2 45.545 101 48 2 231 331 109 202 2.19e-22 96.7
Msa0804170 AT2G39250.1 45.545 101 48 2 231 331 109 202 1.05e-21 96.7
Msa0804170 AT5G60120.6 36.000 200 90 8 227 414 157 330 1.32e-18 89.0
Msa0804170 AT5G60120.1 35.500 200 91 7 227 414 157 330 1.68e-18 88.6
Msa0804170 AT5G60120.2 35.821 201 91 8 227 415 157 331 2.16e-18 88.6
Msa0804170 AT5G60120.4 38.415 164 72 6 227 387 157 294 4.02e-18 87.0
Msa0804170 AT5G60120.3 38.415 164 72 6 227 387 157 294 4.02e-18 87.0
Msa0804170 AT5G60120.5 38.415 164 72 6 227 387 157 294 4.02e-18 87.0
Msa0804170 AT3G54990.2 46.226 106 44 3 231 333 123 218 2.29e-17 82.4
Msa0804170 AT3G54990.1 45.631 103 49 2 231 333 123 218 1.15e-16 82.0
Msa0804170 AT1G16060.7 74.138 58 15 0 334 391 9 66 1.50e-16 78.6
Msa0804170 AT1G36060.1 45.000 80 43 1 312 391 125 203 6.27e-11 64.3

Find 136 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCGGCTGAGTTCTATTTA+TGG 0.191348 5_3:-19754668 Msa0804170:CDS
GGCTCTGAAGTTGATGATTC+TGG 0.212206 5_3:-19758522 Msa0804170:CDS
ATTTGCGCCTCGGAACTTTA+TGG 0.216723 5_3:+19755061 None:intergenic
GTTGGTGTTGGTGCTGGTGC+TGG 0.220856 5_3:+19758592 None:intergenic
AAGAAGATTGTTGATACTTT+TGG 0.222886 5_3:-19758300 Msa0804170:CDS
CACGGTAAATTGAAGTTCTT+TGG 0.247591 5_3:+19758277 None:intergenic
ACCGCTGCTGCGGCAGCGGT+GGG 0.290599 5_3:-19758408 Msa0804170:CDS
GTTGATGATTCTGGTTCAAT+AGG 0.295762 5_3:-19758513 Msa0804170:CDS
CGCTGCTGCGGCAGCGGTGG+GGG 0.299820 5_3:-19758406 Msa0804170:CDS
CAACACCACCAGGATCTTAC+TGG 0.305721 5_3:-19758573 Msa0804170:CDS
TTTGGCTGCTCTAAAGTATT+GGG 0.306366 5_3:-19756148 Msa0804170:CDS
GAAGATATGAAGCCCATCTA+TGG 0.317062 5_3:-19757706 Msa0804170:CDS
GCGAGAATTGGCCGTGTTGC+CGG 0.321909 5_3:-19755269 Msa0804170:CDS
TACAGCTGTTATCCCATAGA+TGG 0.324143 5_3:+19757693 None:intergenic
TTCCAATTATGCAAAAGAAT+TGG 0.341907 5_3:-19755584 Msa0804170:CDS
GACAACTTGTATACTCATAA+TGG 0.342173 5_3:-19759024 Msa0804170:intron
CGTTTAGCTGCCCCGCCAAC+TGG 0.345030 5_3:+19754978 None:intergenic
CACCGCTGCTGCGGCAGCGG+TGG 0.352088 5_3:-19758409 Msa0804170:CDS
CTACAAATTCGAATAATAAC+TGG 0.352540 5_3:-19759155 Msa0804170:CDS
GACTTGTATCTCGGAACATT+TGG 0.362363 5_3:-19755239 Msa0804170:intron
TTGTTCTTGTTCTTCTGCTT+TGG 0.368361 5_3:+19758767 None:intergenic
TCAAGTCAATAGGACTGATT+TGG 0.370990 5_3:+19754645 None:intergenic
CTGATTCTAGAGAACGCTTC+AGG 0.377598 5_3:+19754955 None:intergenic
TTGGTGTTGGTGCTGGTGCT+GGG 0.377768 5_3:+19758593 None:intergenic
CCTAGAAAATCTTCTAGCTT+TGG 0.385172 5_3:+19758696 None:intergenic
CCTTGTGACACCCCGGTAGA+TGG 0.387528 5_3:+19755402 None:intergenic
CTCCACCGCTGCTGCGGCAG+CGG 0.387857 5_3:-19758412 Msa0804170:CDS
GAGATACAAGTCTTTGTTCC+CGG 0.390452 5_3:+19755250 None:intergenic
TTCCTGCAGGCATCACCAAC+AGG 0.398212 5_3:-19755303 Msa0804170:intron
GTTGGTGCTGGTGCTGGGAG+TGG 0.414979 5_3:+19758598 None:intergenic
GCTGCATGTGGGAATGAGTT+TGG 0.416652 5_3:-19758477 Msa0804170:CDS
GGTAGGTGGCAAGCGAGAAT+TGG 0.417872 5_3:-19755281 Msa0804170:CDS
TCTGGTTCAATAGGGAAATC+AGG 0.420422 5_3:-19758504 Msa0804170:CDS
GGCCGCAAGATCCTATGATT+TGG 0.422462 5_3:-19756166 Msa0804170:CDS
GGTGGTGTTGGTGTTGGTGC+TGG 0.423875 5_3:+19758586 None:intergenic
CAGCAACAACATCAACTTCT+CGG 0.424028 5_3:-19754853 Msa0804170:CDS
ATTTGGCTGCTCTAAAGTAT+TGG 0.427354 5_3:-19756149 Msa0804170:CDS
TATGGGATAACAGCTGTAGA+AGG 0.428845 5_3:-19757688 Msa0804170:CDS
CACCGCTGCCGCAGCAGCGG+TGG 0.431278 5_3:+19758410 None:intergenic
AAACACTACTTCAAGTCAAT+AGG 0.436256 5_3:+19754635 None:intergenic
GTTGTTGCTGCTGCTGCTGT+TGG 0.444214 5_3:+19754866 None:intergenic
CCCCACCGCTGCCGCAGCAG+CGG 0.444418 5_3:+19758407 None:intergenic
CGAGAATTGGCCGTGTTGCC+GGG 0.446110 5_3:-19755268 Msa0804170:CDS
CTTTAGAGCAGCCAAATCAT+AGG 0.447422 5_3:+19756155 None:intergenic
AGAACAATCAATCTGGTTTG+TGG 0.454287 5_3:-19758751 Msa0804170:CDS
CCGCTGCTGCGGCAGCGGTG+GGG 0.462790 5_3:-19758407 Msa0804170:CDS
CATTGGTTGCTGATGTTGAA+TGG 0.463694 5_3:+19754830 None:intergenic
ATCATCATCACTACTTTGGT+GGG 0.463957 5_3:-19758623 Msa0804170:CDS
TTGATGATTCTGGTTCAATA+GGG 0.466762 5_3:-19758512 Msa0804170:CDS
CAAGAGGAGCTTCCATCTAC+CGG 0.470693 5_3:-19755414 Msa0804170:CDS
AGAGCTCTCTTCCAGTTGGC+GGG 0.475251 5_3:-19754989 Msa0804170:CDS
ATGTTTGCAGCACTTTGTTG+AGG 0.477979 5_3:+19754891 None:intergenic
TTTCATGCTAGTACCAATGA+TGG 0.480177 5_3:-19754738 Msa0804170:CDS
GCACCAACACCAACACCACC+AGG 0.481866 5_3:-19758583 Msa0804170:CDS
AAGAACAAGAACAATCAATC+TGG 0.483167 5_3:-19758758 Msa0804170:CDS
TGTTTGCAGCACTTTGTTGA+GGG 0.486036 5_3:+19754892 None:intergenic
TATGATCATCATCACTACTT+TGG 0.486383 5_3:-19758627 Msa0804170:CDS
AGAAAATCTTCTAGCTTTGG+TGG 0.488892 5_3:+19758699 None:intergenic
ATGAGAGGAGTTAGTAGTAA+CGG 0.489643 5_3:+19759071 None:intergenic
AAGGGAAGGTCAAGCTAGGA+AGG 0.489953 5_3:-19757669 Msa0804170:CDS
TGATTCTGCAGCTCCATCAT+TGG 0.490937 5_3:+19754725 None:intergenic
TGGATATGACAAAGAAGAAA+AGG 0.490955 5_3:-19756187 Msa0804170:CDS
TTGTCACTGCATTTGCGCCT+CGG 0.493838 5_3:+19755051 None:intergenic
CAATTTACCGTGGTGTCACT+AGG 0.494957 5_3:-19758266 Msa0804170:intron
GCTGCAGAATCAGCAGCAAA+TGG 0.504223 5_3:-19754714 Msa0804170:CDS
GATCCTGGTGGTGTTGGTGT+TGG 0.509940 5_3:+19758580 None:intergenic
TTGGCTGCTCTAAAGTATTG+GGG 0.511428 5_3:-19756147 Msa0804170:CDS
TGGTACTAGCATGAAAATGC+TGG 0.516205 5_3:+19754745 None:intergenic
GATCATCATCACTACTTTGG+TGG 0.521100 5_3:-19758624 Msa0804170:CDS
AGTGACTCTTACAGGGAAGT+TGG 0.524758 5_3:+19756110 None:intergenic
AAATCTTCTAGCTTTGGTGG+TGG 0.525839 5_3:+19758702 None:intergenic
TGCTTACTCCACCGCTGCTG+CGG 0.529248 5_3:-19758418 Msa0804170:CDS
TTTATACTAGGGTGGGGAAA+CGG 0.529987 5_3:-19758792 Msa0804170:intron
CTCAGCCGATGTTGGTGGCA+TGG 0.530259 5_3:+19754680 None:intergenic
AACTGAAGAGGAAGCTGCAG+AGG 0.531137 5_3:-19755099 Msa0804170:CDS
CTTGAAAACCAGTAAGATCC+TGG 0.531357 5_3:+19758565 None:intergenic
TCGCTTGCCACCTACCCTGT+TGG 0.531381 5_3:+19755288 None:intergenic
AAGAGCTCTCTTCCAGTTGG+CGG 0.536065 5_3:-19754990 Msa0804170:CDS
CTAGCTTTGGTGGTGGAGTG+TGG 0.537501 5_3:+19758709 None:intergenic
AATTCATTGCTTCATTGAGA+AGG 0.538177 5_3:-19755534 Msa0804170:intron
AACAAACTGAGGCATTTCCA+TGG 0.538307 5_3:+19759113 None:intergenic
CCATCTACCGGGGTGTCACA+AGG 0.539236 5_3:-19755402 Msa0804170:intron
GAGTCATACGGAATACCATA+GGG 0.544015 5_3:+19754798 None:intergenic
TAGCATGAAAATGCTGGAAG+AGG 0.547125 5_3:+19754751 None:intergenic
CGAGTCATACGGAATACCAT+AGG 0.549420 5_3:+19754797 None:intergenic
CCAATGGCTTCAATCCCCTA+TGG 0.549466 5_3:-19754813 Msa0804170:CDS
TAGAACTCAGCCGATGTTGG+TGG 0.553420 5_3:+19754675 None:intergenic
AAGAGGAGCTTCCATCTACC+GGG 0.554347 5_3:-19755413 Msa0804170:CDS
AAGATATGAAGCCCATCTAT+GGG 0.555486 5_3:-19757705 Msa0804170:CDS
CCATAGGGGATTGAAGCCAT+TGG 0.565801 5_3:+19754813 None:intergenic
TGGCTGCTCTAAAGTATTGG+GGG 0.567440 5_3:-19756146 Msa0804170:CDS
AAATAGAACTCAGCCGATGT+TGG 0.570966 5_3:+19754672 None:intergenic
TATGAGTATACAAGTTGTCA+AGG 0.571623 5_3:+19759028 None:intergenic
GCTAATGGAACTCTGTCGCT+CGG 0.572989 5_3:-19758384 Msa0804170:CDS
GTAGAAGGGAAGGTCAAGCT+AGG 0.574052 5_3:-19757673 Msa0804170:CDS
TAGTAGTAACGGAAGAAGCT+TGG 0.580648 5_3:+19759082 None:intergenic
CATGATTACAGCAACTGAAG+AGG 0.581404 5_3:-19755111 Msa0804170:intron
AAGAGTAGTGGCTTCTCAAG+AGG 0.582094 5_3:-19755430 Msa0804170:CDS
CAATGCCATGCCACCAACAT+CGG 0.582869 5_3:-19754685 Msa0804170:CDS
ACAGCTGTTATCCCATAGAT+GGG 0.584544 5_3:+19757694 None:intergenic
AGGGAAGTTGGTAGTAGCAG+TGG 0.587800 5_3:+19756122 None:intergenic
GGGAACAAAGACTTGTATCT+CGG 0.588471 5_3:-19755248 Msa0804170:CDS
CTTTATGGCCGCAATGTCGT+AGG 0.589259 5_3:+19755076 None:intergenic
AAATCAGGACAAGCTGCATG+TGG 0.591247 5_3:-19758489 Msa0804170:CDS
GGCATCACCAACAGGGTAGG+TGG 0.595697 5_3:-19755295 Msa0804170:CDS
TATTCCGTATGACTCGAATA+CGG 0.597263 5_3:-19754790 Msa0804170:CDS
CAGTAAGATCCTGGTGGTGT+TGG 0.600392 5_3:+19758574 None:intergenic
ATGGGATAACAGCTGTAGAA+GGG 0.605627 5_3:-19757687 Msa0804170:CDS
AGGGAAGGTCAAGCTAGGAA+GGG 0.607036 5_3:-19757668 Msa0804170:CDS
ACAAACTGAGGCATTTCCAT+GGG 0.608871 5_3:+19759114 None:intergenic
ATGAAGAGCTCTCTTCCAGT+TGG 0.609750 5_3:-19754993 Msa0804170:CDS
TGCAGAGGCCTACGACATTG+CGG 0.609893 5_3:-19755084 Msa0804170:CDS
AGCCAAATCATAGGATCTTG+CGG 0.610099 5_3:+19756164 None:intergenic
TCTTCTTGCAGGAAGAGTAG+TGG 0.611461 5_3:-19755442 Msa0804170:intron
GATAACAGCTGTAGAAGGGA+AGG 0.621863 5_3:-19757683 Msa0804170:CDS
CGGTGTTGCGCAGAGTTCCG+AGG 0.623641 5_3:-19758364 Msa0804170:CDS
GAGCTCTCTTCCAGTTGGCG+GGG 0.623879 5_3:-19754988 Msa0804170:CDS
CAAGCTAGGAAGGGTCGTCA+AGG 0.628154 5_3:-19757659 Msa0804170:intron
CATTCAACATCAGCAACCAA+TGG 0.631785 5_3:-19754829 Msa0804170:CDS
GCAGGCATCACCAACAGGGT+AGG 0.639876 5_3:-19755298 Msa0804170:intron
GGGAAGTTGGTAGTAGCAGT+GGG 0.646966 5_3:+19756123 None:intergenic
TCCTGCAGGCATCACCAACA+GGG 0.649115 5_3:-19755302 Msa0804170:intron
AATCAGGACAAGCTGCATGT+GGG 0.650674 5_3:-19758488 Msa0804170:CDS
GCAGAATCAGCAGCAAATGG+AGG 0.655444 5_3:-19754711 Msa0804170:CDS
TAAGCCGTATTCGAGTCATA+CGG 0.655944 5_3:+19754786 None:intergenic
AGTCTTTGTTCCCGGCAACA+CGG 0.656378 5_3:+19755258 None:intergenic
TTACAAACCTTGTGACACCC+CGG 0.662260 5_3:+19755395 None:intergenic
TCATCATCACTACTTTGGTG+GGG 0.667284 5_3:-19758622 Msa0804170:CDS
CAAAGAACTTCAATTTACCG+TGG 0.676500 5_3:-19758276 Msa0804170:CDS
ATTGCGGCCATAAAGTTCCG+AGG 0.680301 5_3:-19755068 Msa0804170:CDS
TGGTCATATTGAACAAACTG+AGG 0.687500 5_3:+19759102 None:intergenic
TATTATACCTAGTGACACCA+CGG 0.692652 5_3:+19758259 None:intergenic
TGAGATGAACAGATATGACG+TGG 0.711855 5_3:-19755024 Msa0804170:CDS
AGAGGAGCTTCCATCTACCG+GGG 0.715037 5_3:-19755412 Msa0804170:CDS
AGTCATACGGAATACCATAG+GGG 0.731791 5_3:+19754799 None:intergenic
GAAAACCAGTAAGATCCTGG+TGG 0.756363 5_3:+19758568 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATGATTTTAATTTG+GGG - chr5_3:19756069-19756088 Msa0804170:intron 10.0%
!!! AACATACTTTTATTTTATTT+TGG - chr5_3:19757318-19757337 Msa0804170:intron 10.0%
!!! TTAGATTATAAAGTAATTTT+TGG - chr5_3:19757354-19757373 Msa0804170:intron 10.0%
!!! AATTTTATTTCTTAATCTAA+CGG + chr5_3:19758021-19758040 None:intergenic 10.0%
!! AAAAACAATAACAATATATA+AGG + chr5_3:19758200-19758219 None:intergenic 10.0%
!!! GTATTTTTTACAATTTTAAT+AGG + chr5_3:19758327-19758346 None:intergenic 10.0%
!! AAAAAAACAAATATTCATGT+AGG + chr5_3:19754949-19754968 None:intergenic 15.0%
!!! TCATTGTTTTTTTTTTTGAA+AGG - chr5_3:19755640-19755659 Msa0804170:intron 15.0%
!!! TAATTATTTTTTGTATCCAA+AGG - chr5_3:19755726-19755745 Msa0804170:intron 15.0%
!!! ATAATATATGCTTTTTCATT+TGG - chr5_3:19756417-19756436 Msa0804170:intron 15.0%
!! TGTTACTAGTAAAATTAAAA+GGG - chr5_3:19756671-19756690 Msa0804170:intron 15.0%
!!! TTTATATTGTTTTAGAGATA+TGG - chr5_3:19757571-19757590 Msa0804170:intron 15.0%
!! GTAAATTAATCTTAATTCAA+TGG + chr5_3:19757793-19757812 None:intergenic 15.0%
!! TAATTTACAATTCATATTCA+TGG - chr5_3:19757805-19757824 Msa0804170:intron 15.0%
!!! AAATCCATTTTGAAATTATA+AGG - chr5_3:19758095-19758114 Msa0804170:intron 15.0%
!!! TTCTTTGTTTAACATTATTT+TGG - chr5_3:19758495-19758514 Msa0804170:CDS 15.0%
!! CAAAGACATTTGATATATTA+GGG + chr5_3:19754855-19754874 None:intergenic 20.0%
!! ACAAAGACATTTGATATATT+AGG + chr5_3:19754856-19754875 None:intergenic 20.0%
!!! TTGTTTTGACTATTTATACT+AGG - chr5_3:19755017-19755036 Msa0804170:CDS 20.0%
!!! TGTTTTGACTATTTATACTA+GGG - chr5_3:19755018-19755037 Msa0804170:CDS 20.0%
!! ACAAATAAAAAAAGATCCTT+TGG + chr5_3:19755745-19755764 None:intergenic 20.0%
!!! ATTTATTGACTATGTTATGT+TGG - chr5_3:19755924-19755943 Msa0804170:intron 20.0%
!!! GTGTTACTAGTAAAATTAAA+AGG - chr5_3:19756670-19756689 Msa0804170:intron 20.0%
!!! AAAATTTGTCTATTTCTCAT+TGG + chr5_3:19757008-19757027 None:intergenic 20.0%
!! TCATGTTAACAAAATACTAT+TGG + chr5_3:19757069-19757088 None:intergenic 20.0%
!! AGATAGAGAGATAAAATTAA+AGG - chr5_3:19757260-19757279 Msa0804170:intron 20.0%
!! GATAGAGAGATAAAATTAAA+GGG - chr5_3:19757261-19757280 Msa0804170:intron 20.0%
!!! TATGATTTTTCTTTGTACAT+TGG + chr5_3:19757751-19757770 None:intergenic 20.0%
!! AATGTACAAAGAAAAATCAT+AGG - chr5_3:19757750-19757769 Msa0804170:intron 20.0%
!!! ATTTTCTACAATCAACTTTA+CGG + chr5_3:19758079-19758098 None:intergenic 20.0%
!! CAATCCTTATAATTTCAAAA+TGG + chr5_3:19758102-19758121 None:intergenic 20.0%
!! TAATCTCAATTCTTACTTAA+TGG + chr5_3:19758144-19758163 None:intergenic 20.0%
!! GTAAGAATTGAGATTATATA+TGG - chr5_3:19758148-19758167 Msa0804170:intron 20.0%
!!! TGTTTTTTTTCCTATATCTT+AGG - chr5_3:19758213-19758232 Msa0804170:intron 20.0%
!! AAAAAATACTTATCATGATC+AGG - chr5_3:19758338-19758357 Msa0804170:CDS 20.0%
!! ACAATACTTCTAATACTTTA+AGG + chr5_3:19758620-19758639 None:intergenic 20.0%
!!! AGTATTGTCTTAAATTTTGT+TGG - chr5_3:19758632-19758651 Msa0804170:CDS 20.0%
! CTACAAATTCGAATAATAAC+TGG - chr5_3:19754666-19754685 Msa0804170:CDS 25.0%
! AAACAAATATTCATGTAGGT+CGG + chr5_3:19754945-19754964 None:intergenic 25.0%
!! AAGAAGATTGTTGATACTTT+TGG - chr5_3:19755521-19755540 Msa0804170:intron 25.0%
! TTGTTTGATTGAAAATCCAA+AGG - chr5_3:19755761-19755780 Msa0804170:intron 25.0%
! TCAAGTTCATAGATTTGATT+TGG - chr5_3:19755964-19755983 Msa0804170:intron 25.0%
! AATTAAACAGTGTTTGATTC+TGG - chr5_3:19756251-19756270 Msa0804170:intron 25.0%
! ATTAAACAGTGTTTGATTCT+GGG - chr5_3:19756252-19756271 Msa0804170:intron 25.0%
!!! ATTAATGGTTTTAGAGTTGT+AGG - chr5_3:19756307-19756326 Msa0804170:intron 25.0%
!!! TAGTACTATGATTGATTTGA+TGG - chr5_3:19756347-19756366 Msa0804170:intron 25.0%
! CACAGTTATGAATATTAGTA+CGG + chr5_3:19756639-19756658 None:intergenic 25.0%
!! TACTTTAACTTACACTTATG+AGG - chr5_3:19756799-19756818 Msa0804170:intron 25.0%
!!! GAACATAGAGAAAACTTTTT+TGG + chr5_3:19756976-19756995 None:intergenic 25.0%
! CAGATATGTTTATTTGACTA+TGG - chr5_3:19757038-19757057 Msa0804170:intron 25.0%
! AAATTTGACTATATGCCATA+AGG - chr5_3:19757382-19757401 Msa0804170:intron 25.0%
! AATTTGACTATATGCCATAA+GGG - chr5_3:19757383-19757402 Msa0804170:intron 25.0%
! AATATCAAATATCACCCTTA+TGG + chr5_3:19757400-19757419 None:intergenic 25.0%
! TGTAACATTGTAAATTGTCA+TGG - chr5_3:19757598-19757617 Msa0804170:intron 25.0%
! TGAAAGAAATATGCTTTACT+TGG - chr5_3:19757890-19757909 Msa0804170:intron 25.0%
!! TCAATTCTTACTTAATGGAT+AGG + chr5_3:19758139-19758158 None:intergenic 25.0%
! TATATAAGGTAAGTCTTGAA+AGG + chr5_3:19758186-19758205 None:intergenic 25.0%
! TAATTGGAAACCTAAGATAT+AGG + chr5_3:19758226-19758245 None:intergenic 25.0%
! TTCCAATTATGCAAAAGAAT+TGG - chr5_3:19758237-19758256 Msa0804170:intron 25.0%
!! TTCCAATTCTTTTGCATAAT+TGG + chr5_3:19758242-19758261 None:intergenic 25.0%
!! GTCTTAAATTTTGTTGGAAA+AGG - chr5_3:19758638-19758657 Msa0804170:CDS 25.0%
TATGAGTATACAAGTTGTCA+AGG + chr5_3:19754796-19754815 None:intergenic 30.0%
GACAACTTGTATACTCATAA+TGG - chr5_3:19754797-19754816 Msa0804170:CDS 30.0%
TTTGACTATTTATACTAGGG+TGG - chr5_3:19755021-19755040 Msa0804170:CDS 30.0%
TTGACTATTTATACTAGGGT+GGG - chr5_3:19755022-19755041 Msa0804170:CDS 30.0%
AAGAACAAGAACAATCAATC+TGG - chr5_3:19755063-19755082 Msa0804170:CDS 30.0%
TATGATCATCATCACTACTT+TGG - chr5_3:19755194-19755213 Msa0804170:intron 30.0%
!! TTGATGATTCTGGTTCAATA+GGG - chr5_3:19755309-19755328 Msa0804170:intron 30.0%
!! GATCTTTTGTTGTCACTATT+TGG - chr5_3:19755783-19755802 Msa0804170:intron 30.0%
!! TAGCTATTGATTTACTCAGT+TGG - chr5_3:19755835-19755854 Msa0804170:intron 30.0%
!!! TTTTAATTTGGGGATTTTGC+AGG - chr5_3:19756079-19756098 Msa0804170:intron 30.0%
ATGCATTGAAGTTGCATTAA+TGG - chr5_3:19756292-19756311 Msa0804170:intron 30.0%
ATAGTACTAATAAGTAACCC+AGG + chr5_3:19756336-19756355 None:intergenic 30.0%
!! CTATGATTGATTTGATGGTA+TGG - chr5_3:19756352-19756371 Msa0804170:intron 30.0%
TCTGTTCAGATAGTTATGAA+GGG - chr5_3:19756549-19756568 Msa0804170:intron 30.0%
TTAGTACGGAATTAATCACT+TGG + chr5_3:19756625-19756644 None:intergenic 30.0%
ACAAATTTCAATACAGTGAG+TGG + chr5_3:19756780-19756799 None:intergenic 30.0%
ATGAGTCCTTGTAGTAAAAA+AGG - chr5_3:19757165-19757184 Msa0804170:intron 30.0%
TGAGTCCTTGTAGTAAAAAA+GGG - chr5_3:19757166-19757185 Msa0804170:intron 30.0%
GATAGAAAACTACTGTACAT+TGG + chr5_3:19757222-19757241 None:intergenic 30.0%
AGGGTGATATTTGATATTCT+TGG - chr5_3:19757402-19757421 Msa0804170:intron 30.0%
TGGATATGACAAAGAAGAAA+AGG - chr5_3:19757634-19757653 Msa0804170:intron 30.0%
AAACACATTATGTTCACACA+TGG + chr5_3:19757866-19757885 None:intergenic 30.0%
ATGTGTGAACATAATGTGTT+TGG - chr5_3:19757865-19757884 Msa0804170:intron 30.0%
ACTTGGTACACAAAATATTG+AGG - chr5_3:19757907-19757926 Msa0804170:intron 30.0%
TACACAAAATATTGAGGCTA+AGG - chr5_3:19757913-19757932 Msa0804170:intron 30.0%
TGGTATCTTAATAAGAGAAC+TGG - chr5_3:19757950-19757969 Msa0804170:intron 30.0%
AATTCATTGCTTCATTGAGA+AGG - chr5_3:19758287-19758306 Msa0804170:CDS 30.0%
CATGATCAGGTACTAAAATT+TGG - chr5_3:19758351-19758370 Msa0804170:CDS 30.0%
AGTGTACAGATTGTATTACA+CGG - chr5_3:19758472-19758491 Msa0804170:CDS 30.0%
! ATCATTTTCACTTTCACCCA+TGG - chr5_3:19754691-19754710 Msa0804170:CDS 35.0%
TGGTCATATTGAACAAACTG+AGG + chr5_3:19754722-19754741 None:intergenic 35.0%
ATGAGAGGAGTTAGTAGTAA+CGG + chr5_3:19754753-19754772 None:intergenic 35.0%
!! GTGATGATGATTTTGATGAG+AGG + chr5_3:19754768-19754787 None:intergenic 35.0%
TACTTAACGCCGTTTAACAA+CGG - chr5_3:19754898-19754917 Msa0804170:CDS 35.0%
!! CTTTTCTAGCCGTTGTTAAA+CGG + chr5_3:19754910-19754929 None:intergenic 35.0%
TGACTATTTATACTAGGGTG+GGG - chr5_3:19755023-19755042 Msa0804170:CDS 35.0%
TTGTTCTTGTTCTTCTGCTT+TGG + chr5_3:19755057-19755076 None:intergenic 35.0%
! AGAACAATCAATCTGGTTTG+TGG - chr5_3:19755070-19755089 Msa0804170:CDS 35.0%
!! AGAAAATCTTCTAGCTTTGG+TGG + chr5_3:19755125-19755144 None:intergenic 35.0%
!! CCTAGAAAATCTTCTAGCTT+TGG + chr5_3:19755128-19755147 None:intergenic 35.0%
! CCAAAGCTAGAAGATTTTCT+AGG - chr5_3:19755125-19755144 Msa0804170:intron 35.0%
ATCATCATCACTACTTTGGT+GGG - chr5_3:19755198-19755217 Msa0804170:intron 35.0%
!!! GCTTTTTCAAACAACAACTC+TGG - chr5_3:19755278-19755297 Msa0804170:CDS 35.0%
!! GTTGATGATTCTGGTTCAAT+AGG - chr5_3:19755308-19755327 Msa0804170:intron 35.0%
! AGCAACAATAGCATTTTCCT+CGG + chr5_3:19755477-19755496 None:intergenic 35.0%
CACGGTAAATTGAAGTTCTT+TGG + chr5_3:19755547-19755566 None:intergenic 35.0%
CAAAGAACTTCAATTTACCG+TGG - chr5_3:19755545-19755564 Msa0804170:CDS 35.0%
TATTATACCTAGTGACACCA+CGG + chr5_3:19755565-19755584 None:intergenic 35.0%
AGTGACAACAAAAGATCCTT+TGG + chr5_3:19755780-19755799 None:intergenic 35.0%
AAGATATGAAGCCCATCTAT+GGG - chr5_3:19756116-19756135 Msa0804170:intron 35.0%
GTCTGTTCAGATAGTTATGA+AGG - chr5_3:19756548-19756567 Msa0804170:intron 35.0%
AACGTTCACTGTTACATGAA+AGG - chr5_3:19756828-19756847 Msa0804170:intron 35.0%
GAGTCCTTGTAGTAAAAAAG+GGG - chr5_3:19757167-19757186 Msa0804170:intron 35.0%
AGTCCTTGTAGTAAAAAAGG+GGG - chr5_3:19757168-19757187 Msa0804170:intron 35.0%
!! ATCTTTATAGCTTGCTACGT+AGG + chr5_3:19757244-19757263 None:intergenic 35.0%
AGACTGTAGATGAGTCAAAA+AGG + chr5_3:19757472-19757491 None:intergenic 35.0%
TGACTCATCTACAGTCTATT+TGG - chr5_3:19757475-19757494 Msa0804170:intron 35.0%
GACTCATCTACAGTCTATTT+GGG - chr5_3:19757476-19757495 Msa0804170:intron 35.0%
CATTGTAAATTGTCATGGCA+TGG - chr5_3:19757603-19757622 Msa0804170:intron 35.0%
!! ATTTGGCTGCTCTAAAGTAT+TGG - chr5_3:19757672-19757691 Msa0804170:CDS 35.0%
!! TTTGGCTGCTCTAAAGTATT+GGG - chr5_3:19757673-19757692 Msa0804170:CDS 35.0%
ACAAAGAAGTGACTCTTACA+GGG + chr5_3:19757721-19757740 None:intergenic 35.0%
AACAAAGAAGTGACTCTTAC+AGG + chr5_3:19757722-19757741 None:intergenic 35.0%
ACAAAATATTGAGGCTAAGG+TGG - chr5_3:19757916-19757935 Msa0804170:intron 35.0%
! TCTTACTTAATGGATAGGCA+TGG + chr5_3:19758134-19758153 None:intergenic 35.0%
ATTTGGTTATCTCTTCTTGC+AGG - chr5_3:19758368-19758387 Msa0804170:CDS 35.0%
!!! AACATTATTTTGGTTCCTGC+AGG - chr5_3:19758505-19758524 Msa0804170:CDS 35.0%
TATTCCGTATGACTCGAATA+CGG - chr5_3:19759031-19759050 Msa0804170:CDS 35.0%
TTTCATGCTAGTACCAATGA+TGG - chr5_3:19759083-19759102 Msa0804170:CDS 35.0%
! ACAAACTGAGGCATTTCCAT+GGG + chr5_3:19754710-19754729 None:intergenic 40.0%
! AACAAACTGAGGCATTTCCA+TGG + chr5_3:19754711-19754730 None:intergenic 40.0%
! TAGTAGTAACGGAAGAAGCT+TGG + chr5_3:19754742-19754761 None:intergenic 40.0%
TTTATACTAGGGTGGGGAAA+CGG - chr5_3:19755029-19755048 Msa0804170:CDS 40.0%
!! AAATCTTCTAGCTTTGGTGG+TGG + chr5_3:19755122-19755141 None:intergenic 40.0%
GATCATCATCACTACTTTGG+TGG - chr5_3:19755197-19755216 Msa0804170:intron 40.0%
TCATCATCACTACTTTGGTG+GGG - chr5_3:19755199-19755218 Msa0804170:intron 40.0%
CTTGAAAACCAGTAAGATCC+TGG + chr5_3:19755259-19755278 None:intergenic 40.0%
! TCTGGTTCAATAGGGAAATC+AGG - chr5_3:19755317-19755336 Msa0804170:intron 40.0%
GAAGATATGAAGCCCATCTA+TGG - chr5_3:19756115-19756134 Msa0804170:intron 40.0%
ACAGCTGTTATCCCATAGAT+GGG + chr5_3:19756130-19756149 None:intergenic 40.0%
TACAGCTGTTATCCCATAGA+TGG + chr5_3:19756131-19756150 None:intergenic 40.0%
TATGGGATAACAGCTGTAGA+AGG - chr5_3:19756133-19756152 Msa0804170:CDS 40.0%
ATGGGATAACAGCTGTAGAA+GGG - chr5_3:19756134-19756153 Msa0804170:CDS 40.0%
!!! TTTTAGAGTTGTAGGACACC+TGG - chr5_3:19756315-19756334 Msa0804170:intron 40.0%
! TTTAGAGTTGTAGGACACCT+GGG - chr5_3:19756316-19756335 Msa0804170:intron 40.0%
ATTCACATGGTGCAGCAAAA+TGG + chr5_3:19756509-19756528 None:intergenic 40.0%
! TTTTGCTGCACCATGTGAAT+TGG - chr5_3:19756509-19756528 Msa0804170:intron 40.0%
TTTGCTGCACCATGTGAATT+GGG - chr5_3:19756510-19756529 Msa0804170:intron 40.0%
CTGAACAGACAAGAAAGCAA+AGG + chr5_3:19756538-19756557 None:intergenic 40.0%
AATACAGTGAGTGGTGTGAT+AGG + chr5_3:19756771-19756790 None:intergenic 40.0%
!!! CAACCCCCTTTTTTACTACA+AGG + chr5_3:19757174-19757193 None:intergenic 40.0%
!! TTCTTGGCTTTTCCTTTGCA+TGG - chr5_3:19757418-19757437 Msa0804170:intron 40.0%
! ATTGTCATGGCATGGTTTGT+AGG - chr5_3:19757611-19757630 Msa0804170:intron 40.0%
AGCCAAATCATAGGATCTTG+CGG + chr5_3:19757660-19757679 None:intergenic 40.0%
!! CTTTAGAGCAGCCAAATCAT+AGG + chr5_3:19757669-19757688 None:intergenic 40.0%
!! TTGGCTGCTCTAAAGTATTG+GGG - chr5_3:19757674-19757693 Msa0804170:CDS 40.0%
CTAAGGTGGCAATGTGAATT+TGG - chr5_3:19757930-19757949 Msa0804170:intron 40.0%
ATCAACTTTACGGAGCAGTT+TGG + chr5_3:19758069-19758088 None:intergenic 40.0%
GAGATACAAGTCTTTGTTCC+CGG + chr5_3:19758574-19758593 None:intergenic 40.0%
GGGAACAAAGACTTGTATCT+CGG - chr5_3:19758573-19758592 Msa0804170:CDS 40.0%
GACTTGTATCTCGGAACATT+TGG - chr5_3:19758582-19758601 Msa0804170:CDS 40.0%
CATGATTACAGCAACTGAAG+AGG - chr5_3:19758710-19758729 Msa0804170:CDS 40.0%
TGAGATGAACAGATATGACG+TGG - chr5_3:19758797-19758816 Msa0804170:intron 40.0%
TGTTTGCAGCACTTTGTTGA+GGG + chr5_3:19758932-19758951 None:intergenic 40.0%
ATGTTTGCAGCACTTTGTTG+AGG + chr5_3:19758933-19758952 None:intergenic 40.0%
CAGCAACAACATCAACTTCT+CGG - chr5_3:19758968-19758987 Msa0804170:intron 40.0%
! CATTGGTTGCTGATGTTGAA+TGG + chr5_3:19758994-19759013 None:intergenic 40.0%
CATTCAACATCAGCAACCAA+TGG - chr5_3:19758992-19759011 Msa0804170:intron 40.0%
AGTCATACGGAATACCATAG+GGG + chr5_3:19759025-19759044 None:intergenic 40.0%
GAGTCATACGGAATACCATA+GGG + chr5_3:19759026-19759045 None:intergenic 40.0%
TAAGCCGTATTCGAGTCATA+CGG + chr5_3:19759038-19759057 None:intergenic 40.0%
TAGCATGAAAATGCTGGAAG+AGG + chr5_3:19759073-19759092 None:intergenic 40.0%
TGGTACTAGCATGAAAATGC+TGG + chr5_3:19759079-19759098 None:intergenic 40.0%
AAATAGAACTCAGCCGATGT+TGG + chr5_3:19759152-19759171 None:intergenic 40.0%
! CATCGGCTGAGTTCTATTTA+TGG - chr5_3:19759153-19759172 Msa0804170:CDS 40.0%
GAAAACCAGTAAGATCCTGG+TGG + chr5_3:19755256-19755275 None:intergenic 45.0%
!! GGCTCTGAAGTTGATGATTC+TGG - chr5_3:19755299-19755318 Msa0804170:intron 45.0%
AAATCAGGACAAGCTGCATG+TGG - chr5_3:19755332-19755351 Msa0804170:intron 45.0%
AATCAGGACAAGCTGCATGT+GGG - chr5_3:19755333-19755352 Msa0804170:intron 45.0%
!! CAATTTACCGTGGTGTCACT+AGG - chr5_3:19755555-19755574 Msa0804170:CDS 45.0%
! TTTTGCAGGCATAGATGGAC+AGG - chr5_3:19756093-19756112 Msa0804170:intron 45.0%
GATAACAGCTGTAGAAGGGA+AGG - chr5_3:19756138-19756157 Msa0804170:CDS 45.0%
CCTCTCTCAGAACAAACTCA+CGG - chr5_3:19756864-19756883 Msa0804170:intron 45.0%
CTCTCTCAGAACAAACTCAC+GGG - chr5_3:19756865-19756884 Msa0804170:intron 45.0%
GTAGCGCATGCAAATGTGAT+TGG - chr5_3:19757293-19757312 Msa0804170:intron 45.0%
AAAAGCCAGCAATGCACCAA+GGG + chr5_3:19757449-19757468 None:intergenic 45.0%
!! TGGCTGCTCTAAAGTATTGG+GGG - chr5_3:19757675-19757694 Msa0804170:CDS 45.0%
AGTGACTCTTACAGGGAAGT+TGG + chr5_3:19757714-19757733 None:intergenic 45.0%
TCTTCTTGCAGGAAGAGTAG+TGG - chr5_3:19758379-19758398 Msa0804170:CDS 45.0%
AAGAGTAGTGGCTTCTCAAG+AGG - chr5_3:19758391-19758410 Msa0804170:CDS 45.0%
TTACAAACCTTGTGACACCC+CGG + chr5_3:19758429-19758448 None:intergenic 45.0%
ATTTGCGCCTCGGAACTTTA+TGG + chr5_3:19758763-19758782 None:intergenic 45.0%
ATGAAGAGCTCTCTTCCAGT+TGG - chr5_3:19758828-19758847 Msa0804170:intron 45.0%
! CTGATTCTAGAGAACGCTTC+AGG + chr5_3:19758869-19758888 None:intergenic 45.0%
CGAGTCATACGGAATACCAT+AGG + chr5_3:19759027-19759046 None:intergenic 45.0%
TGATTCTGCAGCTCCATCAT+TGG + chr5_3:19759099-19759118 None:intergenic 45.0%
!!! TTTTATTTATGATTTTAATT+TGG - chr5_3:19756067-19756086 Msa0804170:intron 5.0%
!!! TTTATTTATGATTTTAATTT+GGG - chr5_3:19756068-19756087 Msa0804170:intron 5.0%
!!! TTTTCTATAATATTTTTTTA+TGG - chr5_3:19756203-19756222 Msa0804170:intron 5.0%
! CAGTAAGATCCTGGTGGTGT+TGG + chr5_3:19755250-19755269 None:intergenic 50.0%
CAACACCACCAGGATCTTAC+TGG - chr5_3:19755248-19755267 Msa0804170:CDS 50.0%
GCTGCATGTGGGAATGAGTT+TGG - chr5_3:19755344-19755363 Msa0804170:intron 50.0%
GCTAATGGAACTCTGTCGCT+CGG - chr5_3:19755437-19755456 Msa0804170:intron 50.0%
! GGGGATTTTGCAGGCATAGA+TGG - chr5_3:19756088-19756107 Msa0804170:intron 50.0%
GTAGAAGGGAAGGTCAAGCT+AGG - chr5_3:19756148-19756167 Msa0804170:CDS 50.0%
AAGGGAAGGTCAAGCTAGGA+AGG - chr5_3:19756152-19756171 Msa0804170:CDS 50.0%
AGGGAAGGTCAAGCTAGGAA+GGG - chr5_3:19756153-19756172 Msa0804170:CDS 50.0%
CACATGGTGCAGCAAAATGG+CGG + chr5_3:19756506-19756525 None:intergenic 50.0%
!! GCAAAGGCACCCAATTCACA+TGG + chr5_3:19756522-19756541 None:intergenic 50.0%
GAGTGGTGTGATAGGTGATG+TGG + chr5_3:19756763-19756782 None:intergenic 50.0%
!! CCGTGAGTTTGTTCTGAGAG+AGG + chr5_3:19756867-19756886 None:intergenic 50.0%
GAAAAGCCAGCAATGCACCA+AGG + chr5_3:19757450-19757469 None:intergenic 50.0%
! GTCATGGCATGGTTTGTAGG+TGG - chr5_3:19757614-19757633 Msa0804170:intron 50.0%
GGCCGCAAGATCCTATGATT+TGG - chr5_3:19757655-19757674 Msa0804170:intron 50.0%
!! GGGAAGTTGGTAGTAGCAGT+GGG + chr5_3:19757701-19757720 None:intergenic 50.0%
!! AGGGAAGTTGGTAGTAGCAG+TGG + chr5_3:19757702-19757721 None:intergenic 50.0%
CAAGAGGAGCTTCCATCTAC+CGG - chr5_3:19758407-19758426 Msa0804170:CDS 50.0%
AAGAGGAGCTTCCATCTACC+GGG - chr5_3:19758408-19758427 Msa0804170:CDS 50.0%
AGTCTTTGTTCCCGGCAACA+CGG + chr5_3:19758566-19758585 None:intergenic 50.0%
AACTGAAGAGGAAGCTGCAG+AGG - chr5_3:19758722-19758741 Msa0804170:CDS 50.0%
CTTTATGGCCGCAATGTCGT+AGG + chr5_3:19758748-19758767 None:intergenic 50.0%
ATTGCGGCCATAAAGTTCCG+AGG - chr5_3:19758753-19758772 Msa0804170:CDS 50.0%
TTGTCACTGCATTTGCGCCT+CGG + chr5_3:19758773-19758792 None:intergenic 50.0%
AAGAGCTCTCTTCCAGTTGG+CGG - chr5_3:19758831-19758850 Msa0804170:intron 50.0%
CCATAGGGGATTGAAGCCAT+TGG + chr5_3:19759011-19759030 None:intergenic 50.0%
CCAATGGCTTCAATCCCCTA+TGG - chr5_3:19759008-19759027 Msa0804170:intron 50.0%
GCTGCAGAATCAGCAGCAAA+TGG - chr5_3:19759107-19759126 Msa0804170:CDS 50.0%
GCAGAATCAGCAGCAAATGG+AGG - chr5_3:19759110-19759129 Msa0804170:CDS 50.0%
CAATGCCATGCCACCAACAT+CGG - chr5_3:19759136-19759155 Msa0804170:CDS 50.0%
TAGAACTCAGCCGATGTTGG+TGG + chr5_3:19759149-19759168 None:intergenic 50.0%
!! CTAGCTTTGGTGGTGGAGTG+TGG + chr5_3:19755115-19755134 None:intergenic 55.0%
!! TTGGTGTTGGTGCTGGTGCT+GGG + chr5_3:19755231-19755250 None:intergenic 55.0%
!! GATCCTGGTGGTGTTGGTGT+TGG + chr5_3:19755244-19755263 None:intergenic 55.0%
CAAGCTAGGAAGGGTCGTCA+AGG - chr5_3:19756162-19756181 Msa0804170:CDS 55.0%
AGAGGAGCTTCCATCTACCG+GGG - chr5_3:19758409-19758428 Msa0804170:CDS 55.0%
TTCCTGCAGGCATCACCAAC+AGG - chr5_3:19758518-19758537 Msa0804170:CDS 55.0%
TCCTGCAGGCATCACCAACA+GGG - chr5_3:19758519-19758538 Msa0804170:CDS 55.0%
GGTAGGTGGCAAGCGAGAAT+TGG - chr5_3:19758540-19758559 Msa0804170:CDS 55.0%
TGCAGAGGCCTACGACATTG+CGG - chr5_3:19758737-19758756 Msa0804170:CDS 55.0%
AGAGCTCTCTTCCAGTTGGC+GGG - chr5_3:19758832-19758851 Msa0804170:intron 55.0%
GTTGTTGCTGCTGCTGCTGT+TGG + chr5_3:19758958-19758977 None:intergenic 55.0%
!! GTTGGTGTTGGTGCTGGTGC+TGG + chr5_3:19755232-19755251 None:intergenic 60.0%
!! GGTGGTGTTGGTGTTGGTGC+TGG + chr5_3:19755238-19755257 None:intergenic 60.0%
GCACCAACACCAACACCACC+AGG - chr5_3:19755238-19755257 Msa0804170:intron 60.0%
TGCTTACTCCACCGCTGCTG+CGG - chr5_3:19755403-19755422 Msa0804170:CDS 60.0%
CCAAGGGACGGTCCATGCAA+AGG + chr5_3:19757433-19757452 None:intergenic 60.0%
CCTTTGCATGGACCGTCCCT+TGG - chr5_3:19757430-19757449 Msa0804170:intron 60.0%
! ACCGTCCCTTGGTGCATTGC+TGG - chr5_3:19757441-19757460 Msa0804170:intron 60.0%
GCCAGCAATGCACCAAGGGA+CGG + chr5_3:19757445-19757464 None:intergenic 60.0%
CCTTGTGACACCCCGGTAGA+TGG + chr5_3:19758422-19758441 None:intergenic 60.0%
! CCATCTACCGGGGTGTCACA+AGG - chr5_3:19758419-19758438 Msa0804170:CDS 60.0%
!! ACCCTGTTGGTGATGCCTGC+AGG + chr5_3:19758523-19758542 None:intergenic 60.0%
GCAGGCATCACCAACAGGGT+AGG - chr5_3:19758523-19758542 Msa0804170:CDS 60.0%
GGCATCACCAACAGGGTAGG+TGG - chr5_3:19758526-19758545 Msa0804170:CDS 60.0%
TCGCTTGCCACCTACCCTGT+TGG + chr5_3:19758536-19758555 None:intergenic 60.0%
GCGAGAATTGGCCGTGTTGC+CGG - chr5_3:19758552-19758571 Msa0804170:CDS 60.0%
CGAGAATTGGCCGTGTTGCC+GGG - chr5_3:19758553-19758572 Msa0804170:CDS 60.0%
GAGCTCTCTTCCAGTTGGCG+GGG - chr5_3:19758833-19758852 Msa0804170:intron 60.0%
!! CTCAGCCGATGTTGGTGGCA+TGG + chr5_3:19759144-19759163 None:intergenic 60.0%
!! GTTGGTGCTGGTGCTGGGAG+TGG + chr5_3:19755226-19755245 None:intergenic 65.0%
!! CGGTGTTGCGCAGAGTTCCG+AGG - chr5_3:19755457-19755476 Msa0804170:intron 65.0%
CGTTTAGCTGCCCCGCCAAC+TGG + chr5_3:19758846-19758865 None:intergenic 65.0%
CTCCACCGCTGCTGCGGCAG+CGG - chr5_3:19755409-19755428 Msa0804170:CDS 75.0%
ACCGCTGCTGCGGCAGCGGT+GGG - chr5_3:19755413-19755432 Msa0804170:CDS 75.0%
GCGGCAGCGGTGGGGGCTAA+TGG - chr5_3:19755422-19755441 Msa0804170:CDS 75.0%
! CACCGCTGCCGCAGCAGCGG+TGG + chr5_3:19755414-19755433 None:intergenic 80.0%
! CACCGCTGCTGCGGCAGCGG+TGG - chr5_3:19755412-19755431 Msa0804170:CDS 80.0%
! CCCCACCGCTGCCGCAGCAG+CGG + chr5_3:19755417-19755436 None:intergenic 80.0%
! CCGCTGCTGCGGCAGCGGTG+GGG - chr5_3:19755414-19755433 Msa0804170:CDS 80.0%
! CGCTGCTGCGGCAGCGGTGG+GGG - chr5_3:19755415-19755434 Msa0804170:CDS 80.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 19754650 19759193 19754650 ID=Msa0804170;Name=Msa0804170
chr5_3 mRNA 19754650 19759193 19754650 ID=Msa0804170-mRNA-1;Parent=Msa0804170;Name=Msa0804170-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.14|0|1|1|1|8|0|517
chr5_3 exon 19759025 19759193 19759025 ID=Msa0804170-mRNA-1:exon:8091;Parent=Msa0804170-mRNA-1
chr5_3 exon 19758267 19758804 19758267 ID=Msa0804170-mRNA-1:exon:8090;Parent=Msa0804170-mRNA-1
chr5_3 exon 19757660 19757742 19757660 ID=Msa0804170-mRNA-1:exon:8089;Parent=Msa0804170-mRNA-1
chr5_3 exon 19756122 19756210 19756122 ID=Msa0804170-mRNA-1:exon:8088;Parent=Msa0804170-mRNA-1
chr5_3 exon 19755535 19755608 19755535 ID=Msa0804170-mRNA-1:exon:8087;Parent=Msa0804170-mRNA-1
chr5_3 exon 19755403 19755453 19755403 ID=Msa0804170-mRNA-1:exon:8086;Parent=Msa0804170-mRNA-1
chr5_3 exon 19755240 19755316 19755240 ID=Msa0804170-mRNA-1:exon:8085;Parent=Msa0804170-mRNA-1
chr5_3 exon 19754650 19755122 19754650 ID=Msa0804170-mRNA-1:exon:8084;Parent=Msa0804170-mRNA-1
chr5_3 CDS 19759025 19759193 19759025 ID=Msa0804170-mRNA-1:cds;Parent=Msa0804170-mRNA-1
chr5_3 CDS 19758267 19758804 19758267 ID=Msa0804170-mRNA-1:cds;Parent=Msa0804170-mRNA-1
chr5_3 CDS 19757660 19757742 19757660 ID=Msa0804170-mRNA-1:cds;Parent=Msa0804170-mRNA-1
chr5_3 CDS 19756122 19756210 19756122 ID=Msa0804170-mRNA-1:cds;Parent=Msa0804170-mRNA-1
chr5_3 CDS 19755535 19755608 19755535 ID=Msa0804170-mRNA-1:cds;Parent=Msa0804170-mRNA-1
chr5_3 CDS 19755403 19755453 19755403 ID=Msa0804170-mRNA-1:cds;Parent=Msa0804170-mRNA-1
chr5_3 CDS 19755240 19755316 19755240 ID=Msa0804170-mRNA-1:cds;Parent=Msa0804170-mRNA-1
chr5_3 CDS 19754650 19755122 19754650 ID=Msa0804170-mRNA-1:cds;Parent=Msa0804170-mRNA-1
Gene Sequence

>Msa0804170

ATGGCTCGTGCTACTACTACAAATTCGAATAATAACTGGCTATCATTTTCACTTTCACCCATGGAAATGCCTCAGTTTGTTCAATATGACCAAGCTTCTTCCGTTACTACTAACTCCTCTCATCAAAATCATCATCACTATTTCCTTGACAACTTGTATACTCATAATGGGTGGGGAAACGGAACCAAAGCAGAAGAACAAGAACAATCAATCTGGTTTGTGGATTCATCAAACACTGTTAACCACACTCCACCACCAAAGCTAGAAGATTTTCTAGGTGACAGTCAAACAGAAACACAAGATTCATCATCACTCACAAACATGTATGATCATCATCACTACTTTGGTGGGGACCACTCCCAGCACCAGCACCAACACCAACACCACCAGGATCTTACTGGTTTTCAAGCTTTTTCAAACAACAACTCTGGCTCTGAAGTTGATGATTCTGGTTCAATAGGGAAATCAGGACAAGCTGCATGTGGGAATGAGTTTGGAACAACTCATTGTGTTGAGTCTGTGAATGAGTTTGCTGCTTACTCCACCGCTGCTGCGGCAGCGGTGGGGGCTAATGGAACTCTGTCGCTCGGTGTTGCGCAGAGTTCCGAGGAAAATGCTATTGTTGCTGTTGCTGCTGATTCTGATAGCTCTAAGAAGATTGTTGATACTTTTGGCCAAAGAACTTCAATTTACCGTGGTGTCACTAGGCATAGATGGACAGGAAGATATGAAGCCCATCTATGGGATAACAGCTGTAGAAGGGAAGGTCAAGCTAGGAAGGGTCGTCAAGGTGGATATGACAAAGAAGAAAAGGCCGCAAGATCCTATGATTTGGCTGCTCTAAAGTATTGGGGGCCCACTGCTACTACCAACTTCCCTGTTTCCAATTATGCAAAAGAATTGGAAGAGATGAAGAATGTAACAAAGCAAGAATTCATTGCTTCATTGAGAAGGAAGAGTAGTGGCTTCTCAAGAGGAGCTTCCATCTACCGGGGTGTCACAAGGCATCACCAACAGGGTAGGTGGCAAGCGAGAATTGGCCGTGTTGCCGGGAACAAAGACTTGTATCTCGGAACATTTGCAACTGAAGAGGAAGCTGCAGAGGCCTACGACATTGCGGCCATAAAGTTCCGAGGCGCAAATGCAGTGACAAACTTTGAGATGAACAGATATGACGTGGAAGCGATAATGAAGAGCTCTCTTCCAGTTGGCGGGGCAGCTAAACGCCTGAAGCGTTCTCTAGAATCAGAACAGAAAGCTTCTACTGACAACAACATTCAGCAGAACAACCCTCAACAAAGTGCTGCAAACATGACCAACAGCAGCAGCAGCAACAACATCAACTTCTCGGCCATTCAACATCAGCAACCAATGGCTTCAATCCCCTATGGTATTCCGTATGACTCGAATACGGCTTACTATCATCACAACCTCTTCCAGCATTTTCATGCTAGTACCAATGATGGAGCTGCAGAATCAGCAGCAAATGGAGGACTCAATGCCATGCCACCAACATCGGCTGAGTTCTATTTATGGCCAAATCAGTCCTATTGA
Protein sequence

>Msa0804170

MARATTTNSNNNWLSFSLSPMEMPQFVQYDQASSVTTNSSHQNHHHYFLDNLYTHNGWGNGTKAEEQEQSIWFVDSSNTVNHTPPPKLEDFLGDSQTETQDSSSLTNMYDHHHYFGGDHSQHQHQHQHHQDLTGFQAFSNNNSGSEVDDSGSIGKSGQAACGNEFGTTHCVESVNEFAAYSTAAAAAVGANGTLSLGVAQSSEENAIVAVAADSDSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARSYDLAALKYWGPTATTNFPVSNYAKELEEMKNVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSSLPVGGAAKRLKRSLESEQKASTDNNIQQNNPQQSAANMTNSSSSNNINFSAIQHQQPMASIPYGIPYDSNTAYYHHNLFQHFHASTNDGAAESAANGGLNAMPPTSAEFYLWPNQSY*