AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1286860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1286860 MtrunA17_Chr8g0360741 98.913 184 2 0 1 184 201 384 1.50e-123 353
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1286860 AT5G54290.1 87.500 184 23 0 1 184 171 354 1.71e-97 286
Msa1286860 AT5G54290.2 87.500 184 23 0 1 184 172 355 2.18e-97 286

Find 53 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTGGCGGCAACTGATTT+TGG 0.158615 8_3:+35667419 None:intergenic
TTCTGGTTTGGCTGTAATTA+TGG 0.159872 8_3:-35667892 Msa1286860:CDS
TCAGAAACAAATTACCTTAT+AGG 0.167684 8_3:+35666140 None:intergenic
TCTTCTTCCTGTCAGGTTAT+TGG 0.199637 8_3:-35668029 None:intergenic
GGATTACCTGTGGCTGCTTC+TGG 0.231671 8_3:-35667909 Msa1286860:CDS
TGACTTACTTGATGGAAAAT+TGG 0.255517 8_3:+35667403 None:intergenic
ATACATCTCTCCCTTACTTT+TGG 0.275809 8_3:-35666335 Msa1286860:CDS
ACCTGTTCTAGCCACCCTTT+TGG 0.292716 8_3:-35667243 Msa1286860:CDS
TCTGGTTTGGCTGTAATTAT+GGG 0.303888 8_3:-35667891 Msa1286860:CDS
ACCTGTGGCTGCTTCTGGTT+TGG 0.311226 8_3:-35667904 Msa1286860:CDS
GGAAAGGCTTATGGACAAAT+TGG 0.328498 8_3:-35667936 Msa1286860:CDS
TACATTACCATTGTGGCAGC+TGG 0.360323 8_3:+35665937 None:intergenic
CAGCATGGATCAATCCTATA+AGG 0.383503 8_3:-35666154 Msa1286860:intron
AAAAGAAGCAGCCAAAAGTA+AGG 0.394341 8_3:+35666324 None:intergenic
GGTGTGCAAGCATACCTGGC+TGG 0.396078 8_3:-35667302 Msa1286860:CDS
CCCAAAAGGGTGGCTAGAAC+AGG 0.429955 8_3:+35667242 None:intergenic
TTTGTACAGAATCCAGTGAT+TGG 0.432285 8_3:-35666388 Msa1286860:intron
AGCAAGCTGCCTCCAATCAC+TGG 0.441209 8_3:+35666376 None:intergenic
GTTAGGTGTGCAAGCATACC+TGG 0.458793 8_3:-35667306 Msa1286860:intron
GTGTATATACCTTCTTAGAT+AGG 0.464767 8_3:-35665966 Msa1286860:CDS
CTAATGTGGTTGCAAGTCCC+AGG 0.485700 8_3:+35667988 None:intergenic
ATGCAGCGACATATCCCAAA+AGG 0.493924 8_3:+35667228 None:intergenic
GACAGCGGAGCAATGCTGTT+AGG 0.503054 8_3:-35665994 Msa1286860:intron
CTTACTTGATGGAAAATTGG+CGG 0.519821 8_3:+35667406 None:intergenic
AAGCAGCCACAGGTAATCCT+TGG 0.531751 8_3:+35667913 None:intergenic
GTGTGCAAGCATACCTGGCT+GGG 0.532324 8_3:-35667301 Msa1286860:CDS
ATCAAAACTGTCGAAGAATG+AGG 0.532805 8_3:+35667442 None:intergenic
TTTGTTTCAGTACCTCAAGA+AGG 0.547535 8_3:+35667862 None:intergenic
ACATTACCATTGTGGCAGCT+GGG 0.561699 8_3:+35665938 None:intergenic
AAAGAAGCAGCCAAAAGTAA+GGG 0.563088 8_3:+35666325 None:intergenic
CGTTTCGCAAGTACTCAGCA+TGG 0.564228 8_3:-35666169 Msa1286860:CDS
TCAAAACTGTCGAAGAATGA+GGG 0.564734 8_3:+35667443 None:intergenic
ATGCAAATGTAAGCCCAGCC+AGG 0.569028 8_3:+35667288 None:intergenic
GTACAGAATCCAGTGATTGG+AGG 0.569251 8_3:-35666385 Msa1286860:intron
TGGGAACAGCCTATCTAAGA+AGG 0.570878 8_3:+35665957 None:intergenic
TACGCCGAGCAGTGCTAATG+TGG 0.571043 8_3:+35667974 None:intergenic
GCTTATGGACAAATTGGCCA+AGG 0.583986 8_3:-35667930 Msa1286860:CDS
GGGATATGTCGCTGCATCCA+AGG 0.585622 8_3:-35667222 Msa1286860:intron
TGCAGCGACATATCCCAAAA+GGG 0.588774 8_3:+35667229 None:intergenic
GGTAATGTAGAAAATGTTGT+GGG 0.594860 8_3:-35665923 Msa1286860:exon
TGGTAATGTAGAAAATGTTG+TGG 0.595826 8_3:-35665924 Msa1286860:exon
TATGGGTCTGAACCTTCTTG+AGG 0.597434 8_3:-35667874 Msa1286860:intron
GGAGCAATGCTGTTAGGAGG+TGG 0.599846 8_3:-35665988 Msa1286860:CDS
GCCAAACCAGAAGCAGCCAC+AGG 0.604082 8_3:+35667903 None:intergenic
AGCGGAGCAATGCTGTTAGG+AGG 0.617303 8_3:-35665991 Msa1286860:CDS
GCTGTTCCCAGCTGCCACAA+TGG 0.640005 8_3:-35665944 Msa1286860:CDS
AACAGGTGTACTGCATGGTG+AGG 0.645829 8_3:+35667259 None:intergenic
TAATGTGGTTGCAAGTCCCA+GGG 0.648436 8_3:+35667989 None:intergenic
GCAACCACATTAGCACTGCT+CGG 0.648831 8_3:-35667978 Msa1286860:CDS
CAAAACTGTCGAAGAATGAG+GGG 0.666686 8_3:+35667444 None:intergenic
AGCGACATATCCCAAAAGGG+TGG 0.693602 8_3:+35667232 None:intergenic
AATTGGCCAAGGATTACCTG+TGG 0.714404 8_3:-35667919 Msa1286860:CDS
GCTAGAACAGGTGTACTGCA+TGG 0.719252 8_3:+35667254 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTGTTATTCATTAAATTTTT+TGG - chr8_3:35666071-35666090 Msa1286860:intron 15.0%
!! TCTTGATGTAAAAATTTATA+TGG - chr8_3:35666650-35666669 Msa1286860:intron 15.0%
!!! GTGTTATTCATTAAATTTTT+TGG - chr8_3:35666071-35666090 Msa1286860:intron 15.0%
!! TCTTGATGTAAAAATTTATA+TGG - chr8_3:35666650-35666669 Msa1286860:intron 15.0%
!!! AAAATACTGTTATTTAGAAG+AGG + chr8_3:35666112-35666131 None:intergenic 20.0%
!!! CTTCTAAATAACAGTATTTT+AGG - chr8_3:35666112-35666131 Msa1286860:intron 20.0%
!! GTAAAAATTTATATGGTGAT+TGG - chr8_3:35666657-35666676 Msa1286860:intron 20.0%
!! AACTAATAAGCAAATAAAAC+TGG + chr8_3:35666704-35666723 None:intergenic 20.0%
!! TAATGAAAAAGAATAATGTC+CGG + chr8_3:35667214-35667233 None:intergenic 20.0%
!!! TGAATCATAAGAAAATTTTC+CGG + chr8_3:35667341-35667360 None:intergenic 20.0%
!!! GAAAATTTTCTTATGATTCA+TGG - chr8_3:35667341-35667360 Msa1286860:intron 20.0%
!!! AAAATACTGTTATTTAGAAG+AGG + chr8_3:35666112-35666131 None:intergenic 20.0%
!!! CTTCTAAATAACAGTATTTT+AGG - chr8_3:35666112-35666131 Msa1286860:intron 20.0%
!! GTAAAAATTTATATGGTGAT+TGG - chr8_3:35666657-35666676 Msa1286860:intron 20.0%
!! AACTAATAAGCAAATAAAAC+TGG + chr8_3:35666704-35666723 None:intergenic 20.0%
!! TAATGAAAAAGAATAATGTC+CGG + chr8_3:35667214-35667233 None:intergenic 20.0%
!!! TGAATCATAAGAAAATTTTC+CGG + chr8_3:35667341-35667360 None:intergenic 20.0%
!!! GAAAATTTTCTTATGATTCA+TGG - chr8_3:35667341-35667360 Msa1286860:intron 20.0%
! TGAATATTGTTGTAAACACA+AGG + chr8_3:35666030-35666049 None:intergenic 25.0%
! TTAGAAGAGGTTGAAAAAAA+AGG + chr8_3:35666099-35666118 None:intergenic 25.0%
! ACGATAAAAAATTCTTCGAA+TGG - chr8_3:35666290-35666309 Msa1286860:intron 25.0%
!!! CACATTTAGTTCTTTCAATA+TGG - chr8_3:35666456-35666475 Msa1286860:intron 25.0%
! TTTACATCAAGAAGAAACAT+TGG + chr8_3:35666642-35666661 None:intergenic 25.0%
! ATAGGTTCTATAATTTGGAT+AGG - chr8_3:35666989-35667008 Msa1286860:intron 25.0%
! AAAAGATTAAATTCACGATC+CGG - chr8_3:35667319-35667338 Msa1286860:intron 25.0%
! TATCTTAAAGAAACGCTTTA+AGG + chr8_3:35667575-35667594 None:intergenic 25.0%
! TCAGAAACAAATTACCTTAT+AGG + chr8_3:35667686-35667705 None:intergenic 25.0%
! TACAAGCTATCCAATTAATT+AGG + chr8_3:35667770-35667789 None:intergenic 25.0%
! TGAATATTGTTGTAAACACA+AGG + chr8_3:35666030-35666049 None:intergenic 25.0%
! TTAGAAGAGGTTGAAAAAAA+AGG + chr8_3:35666099-35666118 None:intergenic 25.0%
! ACGATAAAAAATTCTTCGAA+TGG - chr8_3:35666290-35666309 Msa1286860:intron 25.0%
!!! CACATTTAGTTCTTTCAATA+TGG - chr8_3:35666456-35666475 Msa1286860:intron 25.0%
! TTTACATCAAGAAGAAACAT+TGG + chr8_3:35666642-35666661 None:intergenic 25.0%
! ATAGGTTCTATAATTTGGAT+AGG - chr8_3:35666989-35667008 Msa1286860:intron 25.0%
! AAAAGATTAAATTCACGATC+CGG - chr8_3:35667319-35667338 Msa1286860:intron 25.0%
! TATCTTAAAGAAACGCTTTA+AGG + chr8_3:35667575-35667594 None:intergenic 25.0%
! TCAGAAACAAATTACCTTAT+AGG + chr8_3:35667686-35667705 None:intergenic 25.0%
! TACAAGCTATCCAATTAATT+AGG + chr8_3:35667770-35667789 None:intergenic 25.0%
GAGTAAAAGAAACTACATCT+TGG + chr8_3:35666163-35666182 None:intergenic 30.0%
TGATCTGCGAAAAAAATTCA+AGG + chr8_3:35666346-35666365 None:intergenic 30.0%
TGACTTACTTGATGGAAAAT+TGG + chr8_3:35666423-35666442 None:intergenic 30.0%
CATGAACAAATTCTACTGTT+AGG - chr8_3:35666500-35666519 Msa1286860:intron 30.0%
! AAGAAACATTGGTTACTAAC+AGG + chr8_3:35666631-35666650 None:intergenic 30.0%
!! ATAAAACTGGTTTACCCTTT+TGG + chr8_3:35666691-35666710 None:intergenic 30.0%
!! ATCGGTCAAATCGATTTTAT+TGG - chr8_3:35666758-35666777 Msa1286860:intron 30.0%
TTACTTACGTTTGCATATCA+AGG - chr8_3:35666808-35666827 Msa1286860:intron 30.0%
! GTAAAGACTAAACAGAGTTT+TGG + chr8_3:35666957-35666976 None:intergenic 30.0%
! TTTGGAGTTTCTAAGTATGA+AGG - chr8_3:35667050-35667069 Msa1286860:intron 30.0%
ATTGAAGCGTGAGAAAAAAT+CGG + chr8_3:35667110-35667129 None:intergenic 30.0%
ACACAAAGTTGACAAAAAAG+TGG + chr8_3:35667189-35667208 None:intergenic 30.0%
GTGACTAAATATGCAAATCA+TGG + chr8_3:35667387-35667406 None:intergenic 30.0%
GTATCCACTTCCTAATTAAT+TGG - chr8_3:35667757-35667776 Msa1286860:intron 30.0%
CTATCCAATTAATTAGGAAG+TGG + chr8_3:35667764-35667783 None:intergenic 30.0%
GTGTATATACCTTCTTAGAT+AGG - chr8_3:35667857-35667876 Msa1286860:intron 30.0%
! CATTTTCTACATTACCATTG+TGG + chr8_3:35667896-35667915 None:intergenic 30.0%
! TGGTAATGTAGAAAATGTTG+TGG - chr8_3:35667899-35667918 Msa1286860:CDS 30.0%
GGTAATGTAGAAAATGTTGT+GGG - chr8_3:35667900-35667919 Msa1286860:CDS 30.0%
GAGTAAAAGAAACTACATCT+TGG + chr8_3:35666163-35666182 None:intergenic 30.0%
TGATCTGCGAAAAAAATTCA+AGG + chr8_3:35666346-35666365 None:intergenic 30.0%
TGACTTACTTGATGGAAAAT+TGG + chr8_3:35666423-35666442 None:intergenic 30.0%
CATGAACAAATTCTACTGTT+AGG - chr8_3:35666500-35666519 Msa1286860:intron 30.0%
! AAGAAACATTGGTTACTAAC+AGG + chr8_3:35666631-35666650 None:intergenic 30.0%
!! ATAAAACTGGTTTACCCTTT+TGG + chr8_3:35666691-35666710 None:intergenic 30.0%
!! ATCGGTCAAATCGATTTTAT+TGG - chr8_3:35666758-35666777 Msa1286860:intron 30.0%
TTACTTACGTTTGCATATCA+AGG - chr8_3:35666808-35666827 Msa1286860:intron 30.0%
! GTAAAGACTAAACAGAGTTT+TGG + chr8_3:35666957-35666976 None:intergenic 30.0%
! TTTGGAGTTTCTAAGTATGA+AGG - chr8_3:35667050-35667069 Msa1286860:intron 30.0%
ATTGAAGCGTGAGAAAAAAT+CGG + chr8_3:35667110-35667129 None:intergenic 30.0%
ACACAAAGTTGACAAAAAAG+TGG + chr8_3:35667189-35667208 None:intergenic 30.0%
GTGACTAAATATGCAAATCA+TGG + chr8_3:35667387-35667406 None:intergenic 30.0%
GTATCCACTTCCTAATTAAT+TGG - chr8_3:35667757-35667776 Msa1286860:intron 30.0%
CTATCCAATTAATTAGGAAG+TGG + chr8_3:35667764-35667783 None:intergenic 30.0%
GTGTATATACCTTCTTAGAT+AGG - chr8_3:35667857-35667876 Msa1286860:intron 30.0%
! CATTTTCTACATTACCATTG+TGG + chr8_3:35667896-35667915 None:intergenic 30.0%
! TGGTAATGTAGAAAATGTTG+TGG - chr8_3:35667899-35667918 Msa1286860:CDS 30.0%
GGTAATGTAGAAAATGTTGT+GGG - chr8_3:35667900-35667919 Msa1286860:CDS 30.0%
! AGATTCTATAGCATTTTCCC+TGG - chr8_3:35665817-35665836 Msa1286860:three_prime_UTR 35.0%
! GATTCTATAGCATTTTCCCT+GGG - chr8_3:35665818-35665837 Msa1286860:three_prime_UTR 35.0%
!! TTCTGGTTTGGCTGTAATTA+TGG - chr8_3:35665931-35665950 Msa1286860:exon 35.0%
!! TCTGGTTTGGCTGTAATTAT+GGG - chr8_3:35665932-35665951 Msa1286860:exon 35.0%
TTTGTTTCAGTACCTCAAGA+AGG + chr8_3:35665964-35665983 None:intergenic 35.0%
GAAAAGTGATCTCACAGATT+CGG + chr8_3:35665988-35666007 None:intergenic 35.0%
TTCATAGTCTAACTCTCAGT+TGG - chr8_3:35666046-35666065 Msa1286860:intron 35.0%
TCAAAACTGTCGAAGAATGA+GGG + chr8_3:35666383-35666402 None:intergenic 35.0%
ATCAAAACTGTCGAAGAATG+AGG + chr8_3:35666384-35666403 None:intergenic 35.0%
CTTACTTGATGGAAAATTGG+CGG + chr8_3:35666420-35666439 None:intergenic 35.0%
TGATTGGAAAAAGAGCCAAA+AGG - chr8_3:35666673-35666692 Msa1286860:intron 35.0%
GATTGGAAAAAGAGCCAAAA+GGG - chr8_3:35666674-35666693 Msa1286860:intron 35.0%
ACCCAATCAATACAAATCTC+CGG - chr8_3:35666903-35666922 Msa1286860:intron 35.0%
!! ACCGGAGATTTGTATTGATT+GGG + chr8_3:35666907-35666926 None:intergenic 35.0%
! ACTCTGTTTAGTCTTTACCT+AGG - chr8_3:35666959-35666978 Msa1286860:intron 35.0%
CGAGGATAGGTTCTATAATT+TGG - chr8_3:35666984-35667003 Msa1286860:intron 35.0%
GTTTCTAAGTATGAAGGATC+CGG - chr8_3:35667056-35667075 Msa1286860:intron 35.0%
AAGCAATGTCTCGCATAATT+TGG - chr8_3:35667142-35667161 Msa1286860:intron 35.0%
! TTTTGTCAACTTTGTGTAGC+CGG - chr8_3:35667192-35667211 Msa1286860:intron 35.0%
AGTCACTCTTATGCAAATGA+AGG - chr8_3:35667401-35667420 Msa1286860:intron 35.0%
TTTGTACAGAATCCAGTGAT+TGG - chr8_3:35667435-35667454 Msa1286860:CDS 35.0%
!! TTGCTTTTGACATACACAAC+AGG - chr8_3:35667465-35667484 Msa1286860:intron 35.0%
! ATACATCTCTCCCTTACTTT+TGG - chr8_3:35667488-35667507 Msa1286860:intron 35.0%
AAAGAAGCAGCCAAAAGTAA+GGG + chr8_3:35667501-35667520 None:intergenic 35.0%
AAAAGAAGCAGCCAAAAGTA+AGG + chr8_3:35667502-35667521 None:intergenic 35.0%
GAAAGCAAGCTCTGTAAATA+CGG + chr8_3:35667635-35667654 None:intergenic 35.0%
CTATAGAATCTCCAATAACC+TGG + chr8_3:35665808-35665827 None:intergenic 35.0%
! AGATTCTATAGCATTTTCCC+TGG - chr8_3:35665817-35665836 Msa1286860:three_prime_UTR 35.0%
! GATTCTATAGCATTTTCCCT+GGG - chr8_3:35665818-35665837 Msa1286860:three_prime_UTR 35.0%
!! TTCTGGTTTGGCTGTAATTA+TGG - chr8_3:35665931-35665950 Msa1286860:exon 35.0%
!! TCTGGTTTGGCTGTAATTAT+GGG - chr8_3:35665932-35665951 Msa1286860:exon 35.0%
TTTGTTTCAGTACCTCAAGA+AGG + chr8_3:35665964-35665983 None:intergenic 35.0%
GAAAAGTGATCTCACAGATT+CGG + chr8_3:35665988-35666007 None:intergenic 35.0%
TTCATAGTCTAACTCTCAGT+TGG - chr8_3:35666046-35666065 Msa1286860:intron 35.0%
TCAAAACTGTCGAAGAATGA+GGG + chr8_3:35666383-35666402 None:intergenic 35.0%
ATCAAAACTGTCGAAGAATG+AGG + chr8_3:35666384-35666403 None:intergenic 35.0%
CTTACTTGATGGAAAATTGG+CGG + chr8_3:35666420-35666439 None:intergenic 35.0%
TGATTGGAAAAAGAGCCAAA+AGG - chr8_3:35666673-35666692 Msa1286860:intron 35.0%
GATTGGAAAAAGAGCCAAAA+GGG - chr8_3:35666674-35666693 Msa1286860:intron 35.0%
ACCCAATCAATACAAATCTC+CGG - chr8_3:35666903-35666922 Msa1286860:intron 35.0%
!! ACCGGAGATTTGTATTGATT+GGG + chr8_3:35666907-35666926 None:intergenic 35.0%
! ACTCTGTTTAGTCTTTACCT+AGG - chr8_3:35666959-35666978 Msa1286860:intron 35.0%
CGAGGATAGGTTCTATAATT+TGG - chr8_3:35666984-35667003 Msa1286860:intron 35.0%
GTTTCTAAGTATGAAGGATC+CGG - chr8_3:35667056-35667075 Msa1286860:intron 35.0%
AAGCAATGTCTCGCATAATT+TGG - chr8_3:35667142-35667161 Msa1286860:intron 35.0%
! TTTTGTCAACTTTGTGTAGC+CGG - chr8_3:35667192-35667211 Msa1286860:intron 35.0%
AGTCACTCTTATGCAAATGA+AGG - chr8_3:35667401-35667420 Msa1286860:intron 35.0%
TTTGTACAGAATCCAGTGAT+TGG - chr8_3:35667435-35667454 Msa1286860:CDS 35.0%
!! TTGCTTTTGACATACACAAC+AGG - chr8_3:35667465-35667484 Msa1286860:intron 35.0%
! ATACATCTCTCCCTTACTTT+TGG - chr8_3:35667488-35667507 Msa1286860:intron 35.0%
AAAGAAGCAGCCAAAAGTAA+GGG + chr8_3:35667501-35667520 None:intergenic 35.0%
AAAAGAAGCAGCCAAAAGTA+AGG + chr8_3:35667502-35667521 None:intergenic 35.0%
GAAAGCAAGCTCTGTAAATA+CGG + chr8_3:35667635-35667654 None:intergenic 35.0%
! TCTTTTGCAGGAAAGGCTTA+TGG - chr8_3:35665878-35665897 Msa1286860:three_prime_UTR 40.0%
GGAAAGGCTTATGGACAAAT+TGG - chr8_3:35665887-35665906 Msa1286860:three_prime_UTR 40.0%
CAAAACTGTCGAAGAATGAG+GGG + chr8_3:35666382-35666401 None:intergenic 40.0%
!! AAATTGGCGGCAACTGATTT+TGG + chr8_3:35666407-35666426 None:intergenic 40.0%
!! GAGAGCATTGACTTACTTGA+TGG + chr8_3:35666431-35666450 None:intergenic 40.0%
GGTTACTAACAGGAATACCT+TGG + chr8_3:35666621-35666640 None:intergenic 40.0%
AAAACTCAGCAGTCTCACAT+CGG - chr8_3:35666740-35666759 Msa1286860:intron 40.0%
! CACCGGAGATTTGTATTGAT+TGG + chr8_3:35666908-35666927 None:intergenic 40.0%
AATAGAACACACACACACAC+CGG + chr8_3:35666925-35666944 None:intergenic 40.0%
! TTAGTCTTTACCTAGGAACG+AGG - chr8_3:35666966-35666985 Msa1286860:intron 40.0%
CCAAATGCCTACCATAGTTA+CGG + chr8_3:35667035-35667054 None:intergenic 40.0%
AGCATGATATCCTCAGATAC+CGG + chr8_3:35667078-35667097 None:intergenic 40.0%
AGTGGCAGATCATGAATGTT+CGG + chr8_3:35667171-35667190 None:intergenic 40.0%
!! TTTTGGCTGCTTCTTTTGCT+GGG - chr8_3:35667505-35667524 Msa1286860:intron 40.0%
CAGCATGGATCAATCCTATA+AGG - chr8_3:35667669-35667688 Msa1286860:intron 40.0%
CACGACAAGTATCAGAAACA+TGG + chr8_3:35667797-35667816 None:intergenic 40.0%
! TCTTTTGCAGGAAAGGCTTA+TGG - chr8_3:35665878-35665897 Msa1286860:three_prime_UTR 40.0%
GGAAAGGCTTATGGACAAAT+TGG - chr8_3:35665887-35665906 Msa1286860:three_prime_UTR 40.0%
CAAAACTGTCGAAGAATGAG+GGG + chr8_3:35666382-35666401 None:intergenic 40.0%
!! AAATTGGCGGCAACTGATTT+TGG + chr8_3:35666407-35666426 None:intergenic 40.0%
!! GAGAGCATTGACTTACTTGA+TGG + chr8_3:35666431-35666450 None:intergenic 40.0%
GGTTACTAACAGGAATACCT+TGG + chr8_3:35666621-35666640 None:intergenic 40.0%
AAAACTCAGCAGTCTCACAT+CGG - chr8_3:35666740-35666759 Msa1286860:intron 40.0%
! CACCGGAGATTTGTATTGAT+TGG + chr8_3:35666908-35666927 None:intergenic 40.0%
AATAGAACACACACACACAC+CGG + chr8_3:35666925-35666944 None:intergenic 40.0%
! TTAGTCTTTACCTAGGAACG+AGG - chr8_3:35666966-35666985 Msa1286860:intron 40.0%
CCAAATGCCTACCATAGTTA+CGG + chr8_3:35667035-35667054 None:intergenic 40.0%
AGCATGATATCCTCAGATAC+CGG + chr8_3:35667078-35667097 None:intergenic 40.0%
AGTGGCAGATCATGAATGTT+CGG + chr8_3:35667171-35667190 None:intergenic 40.0%
!! TTTTGGCTGCTTCTTTTGCT+GGG - chr8_3:35667505-35667524 Msa1286860:intron 40.0%
CAGCATGGATCAATCCTATA+AGG - chr8_3:35667669-35667688 Msa1286860:intron 40.0%
CACGACAAGTATCAGAAACA+TGG + chr8_3:35667797-35667816 None:intergenic 40.0%
TAATGTGGTTGCAAGTCCCA+GGG + chr8_3:35665837-35665856 None:intergenic 45.0%
GCTTATGGACAAATTGGCCA+AGG - chr8_3:35665893-35665912 Msa1286860:three_prime_UTR 45.0%
AATTGGCCAAGGATTACCTG+TGG - chr8_3:35665904-35665923 Msa1286860:three_prime_UTR 45.0%
TATGGGTCTGAACCTTCTTG+AGG - chr8_3:35665949-35665968 Msa1286860:CDS 45.0%
TGCAGCGACATATCCCAAAA+GGG + chr8_3:35666597-35666616 None:intergenic 45.0%
ATGCAGCGACATATCCCAAA+AGG + chr8_3:35666598-35666617 None:intergenic 45.0%
CTTTACCTAGGAACGAGGAT+AGG - chr8_3:35666971-35666990 Msa1286860:intron 45.0%
TAGAACCTATCCTCGTTCCT+AGG + chr8_3:35666979-35666998 None:intergenic 45.0%
GACTATCTCGACCGTAACTA+TGG - chr8_3:35667021-35667040 Msa1286860:intron 45.0%
ATCTCGACCGTAACTATGGT+AGG - chr8_3:35667025-35667044 Msa1286860:intron 45.0%
CCGTAACTATGGTAGGCATT+TGG - chr8_3:35667032-35667051 Msa1286860:intron 45.0%
TATGAAGGATCCGGTATCTG+AGG - chr8_3:35667065-35667084 Msa1286860:intron 45.0%
GGTATCTGAGGATATCATGC+TGG - chr8_3:35667077-35667096 Msa1286860:intron 45.0%
GTACAGAATCCAGTGATTGG+AGG - chr8_3:35667438-35667457 Msa1286860:CDS 45.0%
!! CTTTTGGCTGCTTCTTTTGC+TGG - chr8_3:35667504-35667523 Msa1286860:intron 45.0%
! TTTGGCTGCTTCTTTTGCTG+GGG - chr8_3:35667506-35667525 Msa1286860:intron 45.0%
!! GTGATTTGCTTGTTCGACAG+CGG - chr8_3:35667814-35667833 Msa1286860:intron 45.0%
TGGGAACAGCCTATCTAAGA+AGG + chr8_3:35667869-35667888 None:intergenic 45.0%
ACATTACCATTGTGGCAGCT+GGG + chr8_3:35667888-35667907 None:intergenic 45.0%
TACATTACCATTGTGGCAGC+TGG + chr8_3:35667889-35667908 None:intergenic 45.0%
TAATGTGGTTGCAAGTCCCA+GGG + chr8_3:35665837-35665856 None:intergenic 45.0%
GCTTATGGACAAATTGGCCA+AGG - chr8_3:35665893-35665912 Msa1286860:three_prime_UTR 45.0%
AATTGGCCAAGGATTACCTG+TGG - chr8_3:35665904-35665923 Msa1286860:three_prime_UTR 45.0%
TATGGGTCTGAACCTTCTTG+AGG - chr8_3:35665949-35665968 Msa1286860:CDS 45.0%
TGCAGCGACATATCCCAAAA+GGG + chr8_3:35666597-35666616 None:intergenic 45.0%
ATGCAGCGACATATCCCAAA+AGG + chr8_3:35666598-35666617 None:intergenic 45.0%
CTTTACCTAGGAACGAGGAT+AGG - chr8_3:35666971-35666990 Msa1286860:intron 45.0%
TAGAACCTATCCTCGTTCCT+AGG + chr8_3:35666979-35666998 None:intergenic 45.0%
GACTATCTCGACCGTAACTA+TGG - chr8_3:35667021-35667040 Msa1286860:intron 45.0%
ATCTCGACCGTAACTATGGT+AGG - chr8_3:35667025-35667044 Msa1286860:intron 45.0%
CCGTAACTATGGTAGGCATT+TGG - chr8_3:35667032-35667051 Msa1286860:intron 45.0%
TATGAAGGATCCGGTATCTG+AGG - chr8_3:35667065-35667084 Msa1286860:intron 45.0%
GGTATCTGAGGATATCATGC+TGG - chr8_3:35667077-35667096 Msa1286860:intron 45.0%
GTACAGAATCCAGTGATTGG+AGG - chr8_3:35667438-35667457 Msa1286860:CDS 45.0%
!! CTTTTGGCTGCTTCTTTTGC+TGG - chr8_3:35667504-35667523 Msa1286860:intron 45.0%
! TTTGGCTGCTTCTTTTGCTG+GGG - chr8_3:35667506-35667525 Msa1286860:intron 45.0%
!! GTGATTTGCTTGTTCGACAG+CGG - chr8_3:35667814-35667833 Msa1286860:intron 45.0%
TGGGAACAGCCTATCTAAGA+AGG + chr8_3:35667869-35667888 None:intergenic 45.0%
ACATTACCATTGTGGCAGCT+GGG + chr8_3:35667888-35667907 None:intergenic 45.0%
TACATTACCATTGTGGCAGC+TGG + chr8_3:35667889-35667908 None:intergenic 45.0%
CTAATGTGGTTGCAAGTCCC+AGG + chr8_3:35665838-35665857 None:intergenic 50.0%
GCAACCACATTAGCACTGCT+CGG - chr8_3:35665845-35665864 Msa1286860:three_prime_UTR 50.0%
!!! AGGAGCGTCTTTTGCAGGAA+AGG - chr8_3:35665871-35665890 Msa1286860:three_prime_UTR 50.0%
AAGCAGCCACAGGTAATCCT+TGG + chr8_3:35665913-35665932 None:intergenic 50.0%
GTTAGGTGTGCAAGCATACC+TGG - chr8_3:35666517-35666536 Msa1286860:intron 50.0%
ATGCAAATGTAAGCCCAGCC+AGG + chr8_3:35666538-35666557 None:intergenic 50.0%
AACAGGTGTACTGCATGGTG+AGG + chr8_3:35666567-35666586 None:intergenic 50.0%
GCTAGAACAGGTGTACTGCA+TGG + chr8_3:35666572-35666591 None:intergenic 50.0%
! ACCTGTTCTAGCCACCCTTT+TGG - chr8_3:35666580-35666599 Msa1286860:intron 50.0%
! CCTGTTCTAGCCACCCTTTT+GGG - chr8_3:35666581-35666600 Msa1286860:intron 50.0%
AGCGACATATCCCAAAAGGG+TGG + chr8_3:35666594-35666613 None:intergenic 50.0%
!! TTCTTTTGCTGGGGCGTTAC+AGG - chr8_3:35667515-35667534 Msa1286860:intron 50.0%
CGTTTCGCAAGTACTCAGCA+TGG - chr8_3:35667654-35667673 Msa1286860:intron 50.0%
CTAATGTGGTTGCAAGTCCC+AGG + chr8_3:35665838-35665857 None:intergenic 50.0%
GCAACCACATTAGCACTGCT+CGG - chr8_3:35665845-35665864 Msa1286860:three_prime_UTR 50.0%
!!! AGGAGCGTCTTTTGCAGGAA+AGG - chr8_3:35665871-35665890 Msa1286860:three_prime_UTR 50.0%
AAGCAGCCACAGGTAATCCT+TGG + chr8_3:35665913-35665932 None:intergenic 50.0%
GTTAGGTGTGCAAGCATACC+TGG - chr8_3:35666517-35666536 Msa1286860:intron 50.0%
ATGCAAATGTAAGCCCAGCC+AGG + chr8_3:35666538-35666557 None:intergenic 50.0%
AACAGGTGTACTGCATGGTG+AGG + chr8_3:35666567-35666586 None:intergenic 50.0%
GCTAGAACAGGTGTACTGCA+TGG + chr8_3:35666572-35666591 None:intergenic 50.0%
! ACCTGTTCTAGCCACCCTTT+TGG - chr8_3:35666580-35666599 Msa1286860:intron 50.0%
! CCTGTTCTAGCCACCCTTTT+GGG - chr8_3:35666581-35666600 Msa1286860:intron 50.0%
AGCGACATATCCCAAAAGGG+TGG + chr8_3:35666594-35666613 None:intergenic 50.0%
!! TTCTTTTGCTGGGGCGTTAC+AGG - chr8_3:35667515-35667534 Msa1286860:intron 50.0%
CGTTTCGCAAGTACTCAGCA+TGG - chr8_3:35667654-35667673 Msa1286860:intron 50.0%
TACGCCGAGCAGTGCTAATG+TGG + chr8_3:35665852-35665871 None:intergenic 55.0%
ACATTAGCACTGCTCGGCGT+AGG - chr8_3:35665851-35665870 Msa1286860:three_prime_UTR 55.0%
GGATTACCTGTGGCTGCTTC+TGG - chr8_3:35665914-35665933 Msa1286860:three_prime_UTR 55.0%
! ACCTGTGGCTGCTTCTGGTT+TGG - chr8_3:35665919-35665938 Msa1286860:exon 55.0%
GTGTGCAAGCATACCTGGCT+GGG - chr8_3:35666522-35666541 Msa1286860:intron 55.0%
CCCAAAAGGGTGGCTAGAAC+AGG + chr8_3:35666584-35666603 None:intergenic 55.0%
GGGATATGTCGCTGCATCCA+AGG - chr8_3:35666601-35666620 Msa1286860:intron 55.0%
AGCAAGCTGCCTCCAATCAC+TGG + chr8_3:35667450-35667469 None:intergenic 55.0%
GACAGCGGAGCAATGCTGTT+AGG - chr8_3:35667829-35667848 Msa1286860:intron 55.0%
AGCGGAGCAATGCTGTTAGG+AGG - chr8_3:35667832-35667851 Msa1286860:intron 55.0%
GGAGCAATGCTGTTAGGAGG+TGG - chr8_3:35667835-35667854 Msa1286860:intron 55.0%
TACGCCGAGCAGTGCTAATG+TGG + chr8_3:35665852-35665871 None:intergenic 55.0%
ACATTAGCACTGCTCGGCGT+AGG - chr8_3:35665851-35665870 Msa1286860:three_prime_UTR 55.0%
GGATTACCTGTGGCTGCTTC+TGG - chr8_3:35665914-35665933 Msa1286860:three_prime_UTR 55.0%
! ACCTGTGGCTGCTTCTGGTT+TGG - chr8_3:35665919-35665938 Msa1286860:exon 55.0%
GTGTGCAAGCATACCTGGCT+GGG - chr8_3:35666522-35666541 Msa1286860:intron 55.0%
CCCAAAAGGGTGGCTAGAAC+AGG + chr8_3:35666584-35666603 None:intergenic 55.0%
GGGATATGTCGCTGCATCCA+AGG - chr8_3:35666601-35666620 Msa1286860:intron 55.0%
AGCAAGCTGCCTCCAATCAC+TGG + chr8_3:35667450-35667469 None:intergenic 55.0%
GACAGCGGAGCAATGCTGTT+AGG - chr8_3:35667829-35667848 Msa1286860:intron 55.0%
AGCGGAGCAATGCTGTTAGG+AGG - chr8_3:35667832-35667851 Msa1286860:intron 55.0%
GGAGCAATGCTGTTAGGAGG+TGG - chr8_3:35667835-35667854 Msa1286860:intron 55.0%
!!! GGCGTAGGAGCGTCTTTTGC+AGG - chr8_3:35665866-35665885 Msa1286860:three_prime_UTR 60.0%
GCCAAACCAGAAGCAGCCAC+AGG + chr8_3:35665923-35665942 None:intergenic 60.0%
GGTGTGCAAGCATACCTGGC+TGG - chr8_3:35666521-35666540 Msa1286860:intron 60.0%
GCTGTTCCCAGCTGCCACAA+TGG - chr8_3:35667879-35667898 Msa1286860:CDS 60.0%
!!! GGCGTAGGAGCGTCTTTTGC+AGG - chr8_3:35665866-35665885 Msa1286860:three_prime_UTR 60.0%
GCCAAACCAGAAGCAGCCAC+AGG + chr8_3:35665923-35665942 None:intergenic 60.0%
GGTGTGCAAGCATACCTGGC+TGG - chr8_3:35666521-35666540 Msa1286860:intron 60.0%
GCTGTTCCCAGCTGCCACAA+TGG - chr8_3:35667879-35667898 Msa1286860:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 35665806 35668039 35665806 ID=Msa1286860;Name=Msa1286860
chr8_3 mRNA 35665806 35668039 35665806 ID=Msa1286860-mRNA-1;Parent=Msa1286860;Name=Msa1286860-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|1|1|1|1|1|6|130|184
chr8_3 exon 35665806 35666011 35665806 ID=Msa1286860-mRNA-1:exon:10514;Parent=Msa1286860-mRNA-1
chr8_3 exon 35666155 35666201 35666155 ID=Msa1286860-mRNA-1:exon:10513;Parent=Msa1286860-mRNA-1
chr8_3 exon 35666309 35666401 35666309 ID=Msa1286860-mRNA-1:exon:10512;Parent=Msa1286860-mRNA-1
chr8_3 exon 35667223 35667323 35667223 ID=Msa1286860-mRNA-1:exon:10511;Parent=Msa1286860-mRNA-1
chr8_3 exon 35667411 35667483 35667411 ID=Msa1286860-mRNA-1:exon:10510;Parent=Msa1286860-mRNA-1
chr8_3 exon 35667875 35668039 35667875 ID=Msa1286860-mRNA-1:exon:10509;Parent=Msa1286860-mRNA-1
chr8_3 CDS 35667875 35668039 35667875 ID=Msa1286860-mRNA-1:cds;Parent=Msa1286860-mRNA-1
chr8_3 CDS 35667411 35667483 35667411 ID=Msa1286860-mRNA-1:cds;Parent=Msa1286860-mRNA-1
chr8_3 CDS 35667223 35667323 35667223 ID=Msa1286860-mRNA-1:cds;Parent=Msa1286860-mRNA-1
chr8_3 CDS 35666309 35666401 35666309 ID=Msa1286860-mRNA-1:cds;Parent=Msa1286860-mRNA-1
chr8_3 CDS 35666155 35666201 35666155 ID=Msa1286860-mRNA-1:cds;Parent=Msa1286860-mRNA-1
chr8_3 CDS 35665936 35666011 35665936 ID=Msa1286860-mRNA-1:cds;Parent=Msa1286860-mRNA-1
chr8_3 three_prime_UTR 35665806 35665935 35665806 ID=Msa1286860-mRNA-1:three_prime_utr;Parent=Msa1286860-mRNA-1
Gene Sequence

>Msa1286860

CAGGTTATTGGAGATTCTATAGCATTTTCCCTGGGACTTGCAACCACATTAGCACTGCTCGGCGTAGGAGCGTCTTTTGCAGGAAAGGCTTATGGACAAATTGGCCAAGGATTACCTGTGGCTGCTTCTGGTTTGGCTGTAATTATGGGTCTGAACCTTCTTGAGATCATTGAATTACAGCTCCCCTCATTCTTCGACAGTTTTGATCCAAAATCAGTTGCCGCCAATTTTCCATCAAGTGTGCAAGCATACCTGGCTGGGCTTACATTTGCATTAGCTGCCTCACCATGCAGTACACCTGTTCTAGCCACCCTTTTGGGATATGTCGCTGCATCCAAGAATCCAGTGATTGGAGGCAGCTTGCTTTTGACATACACAACAGGATACATCTCTCCCTTACTTTTGGCTGCTTCTTTTGCTGGGGCGTTACAGAGCTTGCTTTCGTTTCGCAAGTACTCAGCATGGATCAATCCTATAAGCGGAGCAATGCTGTTAGGAGGTGGTGTATATACCTTCTTAGATAGGCTGTTCCCAGCTGCCACAATGGTAATGTAG

Protein sequence

>Msa1286860

QVIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGQGLPVAASGLAVIMGLNLLEIIELQLPSFFDSFDPKSVAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYISPLLLAASFAGALQSLLSFRKYSAWINPISGAMLLGGGVYTFLDRLFPAATMVM*