AlfalfaGEDB | Msa1036260

M. sativa cultivar zhongmu-4 / Msa1036260

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1036260	XP_013449814.1	93.407	182	11	1	1	182	1	181	3.34e-102	301

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1036260	A0A072U2A7	93.407	182	11	1	1	182	1	181	1.59e-102	301

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1036260	0.805438	1.334968e-49	-8.615850e-47
Msa0000610	Msa1036260	0.824870	6.386432e-54	-8.615850e-47
Msa0000800	Msa1036260	-0.830832	2.351522e-55	-8.615850e-47
Msa0001510	Msa1036260	0.934838	2.168668e-96	-8.615850e-47
Msa0001540	Msa1036260	0.812869	3.411923e-51	-8.615850e-47
Msa0001550	Msa1036260	0.801438	9.004583e-49	-8.615850e-47
Msa0002110	Msa1036260	0.891049	5.661358e-74	-8.615850e-47
Msa0002690	Msa1036260	0.905787	2.968221e-80	-8.615850e-47
Msa0002700	Msa1036260	0.899125	2.700193e-77	-8.615850e-47
Msa0003340	Msa1036260	0.880362	5.842623e-70	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1036260	MtrunA17_Chr7g0260541	93.407	182	11	1	1	182	1	181	3.07e-106	301

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1036260	AT3G51510.1	65.414	133	40	2	50	182	54	180	7.77e-53	167

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Find 43 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAACCCACTTCTTCTTC+TGG	0.278305	7_1:+72615215	Msa1036260:CDS
AACAGACTTGAACCACAGGA+AGG	0.628717	7_1:-72616046	None:intergenic
AAGAAGAAGTGGGTTTGTTT+TGG	0.258797	7_1:-72615211	None:intergenic
AAGCTGAGGAACAAGACAAG+AGG	0.642384	7_1:+72616085	Msa1036260:CDS
AATTACCGAAGTGGGAACAC+CGG	0.661017	7_1:-72615484	None:intergenic
ACACCATCCATGGCAGTAGC+AGG	0.533148	7_1:+72614936	Msa1036260:exon
ACATACAGTTGACAGTGATG+AGG	0.672865	7_1:-72614976	None:intergenic
ACATAGGGGAATGCCTAGAA+AGG	0.554184	7_1:-72615033	None:intergenic
ACTCAGAAGAACCTCCTCCA+TGG	0.530018	7_1:+72615174	Msa1036260:CDS
ACTTGACTCTGCTGAGCCTT+TGG	0.330126	7_1:-72615114	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGATGAAAAAATACCTTCAT+GGG	+	chr7_1:72615142-72615161	Msa1036260:CDS	30.0%
ATGAAAGTAATTACCGAAGT+GGG	-	chr7_1:72615495-72615514	None:intergenic	30.0%
GCCTTAAGTTAGTTATGATT+AGG	+	chr7_1:72615788-72615807	Msa1036260:intron	30.0%
ATTTGCTCGATGAAATTGTA+AGG	+	chr7_1:72616257-72616276	Msa1036260:three_prime_UTR	30.0%
TTTGCTCGATGAAATTGTAA+GGG	+	chr7_1:72616258-72616277	Msa1036260:three_prime_UTR	30.0%
CGATGAAAAAATACCTTCAT+GGG	+	chr7_1:72615142-72615161	Msa1036260:CDS	30.0%
ATGAAAGTAATTACCGAAGT+GGG	-	chr7_1:72615495-72615514	None:intergenic	30.0%
GCCTTAAGTTAGTTATGATT+AGG	+	chr7_1:72615788-72615807	Msa1036260:intron	30.0%
ATTTGCTCGATGAAATTGTA+AGG	+	chr7_1:72616257-72616276	Msa1036260:three_prime_UTR	30.0%
TTTGCTCGATGAAATTGTAA+GGG	+	chr7_1:72616258-72616277	Msa1036260:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	72614927	72616351	72614927	ID=Msa1036260;Name=Msa1036260
chr7_1	mRNA	72614927	72616351	72614927	ID=Msa1036260-mRNA-1;Parent=Msa1036260;Name=Msa1036260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=18\|1\|1\|1\|1\|1\|3\|232\|182
chr7_1	exon	72614927	72615301	72614927	ID=Msa1036260-mRNA-1:exon:17684;Parent=Msa1036260-mRNA-1
chr7_1	exon	72615384	72615500	72615384	ID=Msa1036260-mRNA-1:exon:17685;Parent=Msa1036260-mRNA-1
chr7_1	exon	72616045	72616351	72616045	ID=Msa1036260-mRNA-1:exon:17686;Parent=Msa1036260-mRNA-1
chr7_1	five_prime_UTR	72614927	72614944	72614927	ID=Msa1036260-mRNA-1:five_prime_utr;Parent=Msa1036260-mRNA-1
chr7_1	CDS	72614945	72615301	72614945	ID=Msa1036260-mRNA-1:cds;Parent=Msa1036260-mRNA-1
chr7_1	CDS	72615384	72615500	72615384	ID=Msa1036260-mRNA-1:cds;Parent=Msa1036260-mRNA-1
chr7_1	CDS	72616045	72616119	72616045	ID=Msa1036260-mRNA-1:cds;Parent=Msa1036260-mRNA-1
chr7_1	three_prime_UTR	72616120	72616351	72616120	ID=Msa1036260-mRNA-1:three_prime_utr;Parent=Msa1036260-mRNA-1

Gene Sequence

>Msa1036260

ATGGCAGTAGCAGGAAGTGCTGCTACCTTCTCCTCATCACTGTCAACTGTATGTTTGTTACAAAACCGACATGCATCACAACCCAAAACCTTTCTAGGCATTCCCCTATGTCAGAAAACGTCCCTCAGTAACAAAAAATCACCACACAGGTTTTTAACAGTGGCAGTGACCAAAGGCTCAGCAGAGTCAAGTAAATCCGATGAAAAAATACCTTCATGGGCTAAGCCTGACTCAGAAGAACCTCCTCCATGGGCTCAAAATGAAGCCCAAAACAAACCCACTTCTTCTTCTGGACAAGGATTTGTTATTCCGTTTTATGTTTATTTACTTGCCTCTGCTATCACTGCAATTGCCGCTATTGGTTCCATATTTGAGTATGTGAATCAAAAGCCAGTGTTTGGAGTTTTGAGCTCTGATAGTGTTTTCTATGCTCCTTTGCTTGGTTTTTTCGCCTTCACCGGTGTTCCCACTTCGGCCTTCCTGTGGTTCAAGTCTGTTCAAGCAGCCAACAAGGAAGCTGAGGAACAAGACAAGAGGGATGGTTATTAA

Protein sequence

>Msa1036260

MAVAGSAATFSSSLSTVCLLQNRHASQPKTFLGIPLCQKTSLSNKKSPHRFLTVAVTKGSAESSKSDEKIPSWAKPDSEEPPPWAQNEAQNKPTSSSGQGFVIPFYVYLLASAITAIAAIGSIFEYVNQKPVFGVLSSDSVFYAPLLGFFAFTGVPTSAFLWFKSVQAANKEAEEQDKRDGY*