AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1036260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1036260 MtrunA17_Chr7g0260541 93.407 182 11 1 1 182 1 181 3.07e-106 301
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1036260 AT3G51510.1 65.414 133 40 2 50 182 54 180 7.77e-53 167

Find 43 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAATGCCTAGAAAGGTTT+TGG 0.235538 7_1:-72615027 None:intergenic
TTGATTCACATACTCAAATA+TGG 0.236469 7_1:-72615391 None:intergenic
TCACAACCCAAAACCTTTCT+AGG 0.258705 7_1:+72615020 Msa1036260:CDS
AAGAAGAAGTGGGTTTGTTT+TGG 0.258797 7_1:-72615211 None:intergenic
AACAAACCCACTTCTTCTTC+TGG 0.278305 7_1:+72615215 Msa1036260:CDS
ACTTGACTCTGCTGAGCCTT+TGG 0.330126 7_1:-72615114 None:intergenic
GGAGGAGGTTCTTCTGAGTC+AGG 0.395874 7_1:-72615170 None:intergenic
TTGTTCCTCAGCTTCCTTGT+TGG 0.401097 7_1:-72616076 None:intergenic
ATTTGCTCGATGAAATTGTA+AGG 0.419043 7_1:+72616257 Msa1036260:three_prime_UTR
GTGAATCAAAAGCCAGTGTT+TGG 0.428557 7_1:+72615405 Msa1036260:CDS
CTTTGTCCGCGTAAGTCATA+CGG 0.468893 7_1:+72616145 Msa1036260:three_prime_UTR
GCAAGTAAATAAACATAAAA+CGG 0.478470 7_1:-72615254 None:intergenic
CCCACTTCTTCTTCTGGACA+AGG 0.489189 7_1:+72615221 Msa1036260:CDS
ACTCAGAAGAACCTCCTCCA+TGG 0.530018 7_1:+72615174 Msa1036260:CDS
ACACCATCCATGGCAGTAGC+AGG 0.533148 7_1:+72614936 Msa1036260:exon
CTTCACCGGTGTTCCCACTT+CGG 0.535339 7_1:+72615479 Msa1036260:CDS
ACATAGGGGAATGCCTAGAA+AGG 0.554184 7_1:-72615033 None:intergenic
AGTTGACAGTGATGAGGAGA+AGG 0.557021 7_1:-72614970 None:intergenic
CTCAGAAGAACCTCCTCCAT+GGG 0.557982 7_1:+72615175 Msa1036260:CDS
GTCTGTTCAAGCAGCCAACA+AGG 0.565704 7_1:+72616062 Msa1036260:CDS
CTTCCTGCTACTGCCATGGA+TGG 0.574251 7_1:-72614939 None:intergenic
CGAAGTGGGAACACCGGTGA+AGG 0.578885 7_1:-72615478 None:intergenic
CAATCTACAAACACCATCCA+TGG 0.578967 7_1:+72614926 None:intergenic
GATGAAAGTAATTACCGAAG+TGG 0.584458 7_1:-72615493 None:intergenic
ATGAAAGTAATTACCGAAGT+GGG 0.587934 7_1:-72615492 None:intergenic
TTAACAGTGGCAGTGACCAA+AGG 0.589461 7_1:+72615098 Msa1036260:CDS
GAGTCAGGCTTAGCCCATGA+AGG 0.590685 7_1:-72615155 None:intergenic
CTTGAACAGACTTGAACCAC+AGG 0.591556 7_1:-72616050 None:intergenic
ATTCAATTCAGGCCTTCCTG+TGG 0.597191 7_1:+72616034 Msa1036260:intron
TCCTTGTCCAGAAGAAGAAG+TGG 0.598183 7_1:-72615222 None:intergenic
AGCTGAGGAACAAGACAAGA+GGG 0.603125 7_1:+72616086 Msa1036260:CDS
AGCACTTCCTGCTACTGCCA+TGG 0.605704 7_1:-72614943 None:intergenic
TTTGCTCGATGAAATTGTAA+GGG 0.608182 7_1:+72616258 Msa1036260:three_prime_UTR
AGCAGCCAACAAGGAAGCTG+AGG 0.612169 7_1:+72616071 Msa1036260:CDS
CCTTGTCCAGAAGAAGAAGT+GGG 0.612408 7_1:-72615221 None:intergenic
CAATTTCCGTATGACTTACG+CGG 0.615627 7_1:-72616151 None:intergenic
GAGCTCAAAACTCCAAACAC+TGG 0.621937 7_1:-72615417 None:intergenic
AACAGACTTGAACCACAGGA+AGG 0.628717 7_1:-72616046 None:intergenic
AAGCTGAGGAACAAGACAAG+AGG 0.642384 7_1:+72616085 Msa1036260:CDS
GGCAATTGCAGTGATAGCAG+AGG 0.656195 7_1:-72615276 None:intergenic
GAGGAACAAGACAAGAGGGA+TGG 0.660419 7_1:+72616090 Msa1036260:CDS
AATTACCGAAGTGGGAACAC+CGG 0.661017 7_1:-72615484 None:intergenic
ACATACAGTTGACAGTGATG+AGG 0.672865 7_1:-72614976 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAGTTGAAAATATTTTA+TGG + chr7_1:72615681-72615700 Msa1036260:intron 10.0%
!!! AATAAGTTGAAAATATTTTA+TGG + chr7_1:72615681-72615700 Msa1036260:intron 10.0%
!! GCAAGTAAATAAACATAAAA+CGG - chr7_1:72615257-72615276 None:intergenic 20.0%
!! GATAACGAATAATCATAAAA+TGG - chr7_1:72615520-72615539 None:intergenic 20.0%
!! AATCAGTTTATACACTTTAT+AGG + chr7_1:72615588-72615607 Msa1036260:intron 20.0%
!!! TTTTTTCATAAGCTATTATG+CGG + chr7_1:72615649-72615668 Msa1036260:intron 20.0%
!!! ATTTGTTATGTTAGTTAACT+TGG + chr7_1:72615816-72615835 Msa1036260:intron 20.0%
!!! TTTGTTATGTTAGTTAACTT+GGG + chr7_1:72615817-72615836 Msa1036260:intron 20.0%
!! AAATAGTAGAATGAAGAATA+TGG - chr7_1:72615878-72615897 None:intergenic 20.0%
!! TGCAATTTCAAAAACTAATT+TGG - chr7_1:72616319-72616338 None:intergenic 20.0%
!! GCAAGTAAATAAACATAAAA+CGG - chr7_1:72615257-72615276 None:intergenic 20.0%
!! GATAACGAATAATCATAAAA+TGG - chr7_1:72615520-72615539 None:intergenic 20.0%
!! AATCAGTTTATACACTTTAT+AGG + chr7_1:72615588-72615607 Msa1036260:intron 20.0%
!!! TTTTTTCATAAGCTATTATG+CGG + chr7_1:72615649-72615668 Msa1036260:intron 20.0%
!!! ATTTGTTATGTTAGTTAACT+TGG + chr7_1:72615816-72615835 Msa1036260:intron 20.0%
!!! TTTGTTATGTTAGTTAACTT+GGG + chr7_1:72615817-72615836 Msa1036260:intron 20.0%
!! AAATAGTAGAATGAAGAATA+TGG - chr7_1:72615878-72615897 None:intergenic 20.0%
!! TGCAATTTCAAAAACTAATT+TGG - chr7_1:72616319-72616338 None:intergenic 20.0%
!! AAGAGATTAGTTATTTACAG+CGG - chr7_1:72615300-72615319 None:intergenic 25.0%
! TTGAATTTGATGTTACAGAT+TGG + chr7_1:72615366-72615385 Msa1036260:intron 25.0%
! TTGATTCACATACTCAAATA+TGG - chr7_1:72615394-72615413 None:intergenic 25.0%
! ATTCAACCTTAACAAACATA+TGG - chr7_1:72615542-72615561 None:intergenic 25.0%
! ACTGCATTAATTGTTAGATA+TGG + chr7_1:72615739-72615758 Msa1036260:intron 25.0%
! CATTAATTGTTAGATATGGT+AGG + chr7_1:72615743-72615762 Msa1036260:intron 25.0%
! ACCTAATCATAACTAACTTA+AGG - chr7_1:72615792-72615811 None:intergenic 25.0%
! TTAAGTTAGTTATGATTAGG+TGG + chr7_1:72615791-72615810 Msa1036260:intron 25.0%
! TGAAGAATATGGTTCAATTA+GGG - chr7_1:72615867-72615886 None:intergenic 25.0%
! ATGAAGAATATGGTTCAATT+AGG - chr7_1:72615868-72615887 None:intergenic 25.0%
!! CTCAATTTATTTCTCTTAGT+CGG + chr7_1:72615908-72615927 Msa1036260:intron 25.0%
!! TCAATTTATTTCTCTTAGTC+GGG + chr7_1:72615909-72615928 Msa1036260:intron 25.0%
! ATTCATTTACACGAATTGAA+TGG + chr7_1:72615971-72615990 Msa1036260:intron 25.0%
! GAGTTAATGTTATTCAATTC+AGG + chr7_1:72616023-72616042 Msa1036260:intron 25.0%
!! AAGAGATTAGTTATTTACAG+CGG - chr7_1:72615300-72615319 None:intergenic 25.0%
! TTGAATTTGATGTTACAGAT+TGG + chr7_1:72615366-72615385 Msa1036260:intron 25.0%
! TTGATTCACATACTCAAATA+TGG - chr7_1:72615394-72615413 None:intergenic 25.0%
! ATTCAACCTTAACAAACATA+TGG - chr7_1:72615542-72615561 None:intergenic 25.0%
! ACTGCATTAATTGTTAGATA+TGG + chr7_1:72615739-72615758 Msa1036260:intron 25.0%
! CATTAATTGTTAGATATGGT+AGG + chr7_1:72615743-72615762 Msa1036260:intron 25.0%
! ACCTAATCATAACTAACTTA+AGG - chr7_1:72615792-72615811 None:intergenic 25.0%
! TTAAGTTAGTTATGATTAGG+TGG + chr7_1:72615791-72615810 Msa1036260:intron 25.0%
! TGAAGAATATGGTTCAATTA+GGG - chr7_1:72615867-72615886 None:intergenic 25.0%
! ATGAAGAATATGGTTCAATT+AGG - chr7_1:72615868-72615887 None:intergenic 25.0%
!! CTCAATTTATTTCTCTTAGT+CGG + chr7_1:72615908-72615927 Msa1036260:intron 25.0%
!! TCAATTTATTTCTCTTAGTC+GGG + chr7_1:72615909-72615928 Msa1036260:intron 25.0%
! ATTCATTTACACGAATTGAA+TGG + chr7_1:72615971-72615990 Msa1036260:intron 25.0%
! GAGTTAATGTTATTCAATTC+AGG + chr7_1:72616023-72616042 Msa1036260:intron 25.0%
!!! TGGTGATTTTTTGTTACTGA+GGG - chr7_1:72615069-72615088 None:intergenic 30.0%
!!! CCATGAAGGTATTTTTTCAT+CGG - chr7_1:72615144-72615163 None:intergenic 30.0%
CGATGAAAAAATACCTTCAT+GGG + chr7_1:72615142-72615161 Msa1036260:CDS 30.0%
ATGAAAGTAATTACCGAAGT+GGG - chr7_1:72615495-72615514 None:intergenic 30.0%
! CGTTATCCATATGTTTGTTA+AGG + chr7_1:72615533-72615552 Msa1036260:intron 30.0%
GCCTTAAGTTAGTTATGATT+AGG + chr7_1:72615788-72615807 Msa1036260:intron 30.0%
ATTTGCTCGATGAAATTGTA+AGG + chr7_1:72616257-72616276 Msa1036260:three_prime_UTR 30.0%
TTTGCTCGATGAAATTGTAA+GGG + chr7_1:72616258-72616277 Msa1036260:three_prime_UTR 30.0%
!!! TGGTGATTTTTTGTTACTGA+GGG - chr7_1:72615069-72615088 None:intergenic 30.0%
!!! CCATGAAGGTATTTTTTCAT+CGG - chr7_1:72615144-72615163 None:intergenic 30.0%
CGATGAAAAAATACCTTCAT+GGG + chr7_1:72615142-72615161 Msa1036260:CDS 30.0%
ATGAAAGTAATTACCGAAGT+GGG - chr7_1:72615495-72615514 None:intergenic 30.0%
! CGTTATCCATATGTTTGTTA+AGG + chr7_1:72615533-72615552 Msa1036260:intron 30.0%
GCCTTAAGTTAGTTATGATT+AGG + chr7_1:72615788-72615807 Msa1036260:intron 30.0%
ATTTGCTCGATGAAATTGTA+AGG + chr7_1:72616257-72616276 Msa1036260:three_prime_UTR 30.0%
TTTGCTCGATGAAATTGTAA+GGG + chr7_1:72616258-72616277 Msa1036260:three_prime_UTR 30.0%
!!! GTGGTGATTTTTTGTTACTG+AGG - chr7_1:72615070-72615089 None:intergenic 35.0%
GTAACAAAAAATCACCACAC+AGG + chr7_1:72615072-72615091 Msa1036260:CDS 35.0%
CCGATGAAAAAATACCTTCA+TGG + chr7_1:72615141-72615160 Msa1036260:CDS 35.0%
!! AGAAGAAGTGGGTTTGTTTT+GGG - chr7_1:72615213-72615232 None:intergenic 35.0%
!! AAGAAGAAGTGGGTTTGTTT+TGG - chr7_1:72615214-72615233 None:intergenic 35.0%
GATGAAAGTAATTACCGAAG+TGG - chr7_1:72615496-72615515 None:intergenic 35.0%
GTTTATACACTTTATAGGCC+TGG + chr7_1:72615593-72615612 Msa1036260:intron 35.0%
AATGCAGTTTGCATGAACTA+TGG - chr7_1:72615727-72615746 None:intergenic 35.0%
AACTTGGGATCACTGTATAA+AGG + chr7_1:72615832-72615851 Msa1036260:intron 35.0%
GAATATGGTTCAATTAGGGT+AGG - chr7_1:72615863-72615882 None:intergenic 35.0%
ATCAACATTGTTGAGAAGCA+TGG - chr7_1:72615940-72615959 None:intergenic 35.0%
!!! GTGGTGATTTTTTGTTACTG+AGG - chr7_1:72615070-72615089 None:intergenic 35.0%
GTAACAAAAAATCACCACAC+AGG + chr7_1:72615072-72615091 Msa1036260:CDS 35.0%
CCGATGAAAAAATACCTTCA+TGG + chr7_1:72615141-72615160 Msa1036260:CDS 35.0%
!! AGAAGAAGTGGGTTTGTTTT+GGG - chr7_1:72615213-72615232 None:intergenic 35.0%
!! AAGAAGAAGTGGGTTTGTTT+TGG - chr7_1:72615214-72615233 None:intergenic 35.0%
GATGAAAGTAATTACCGAAG+TGG - chr7_1:72615496-72615515 None:intergenic 35.0%
GTTTATACACTTTATAGGCC+TGG + chr7_1:72615593-72615612 Msa1036260:intron 35.0%
AATGCAGTTTGCATGAACTA+TGG - chr7_1:72615727-72615746 None:intergenic 35.0%
AACTTGGGATCACTGTATAA+AGG + chr7_1:72615832-72615851 Msa1036260:intron 35.0%
GAATATGGTTCAATTAGGGT+AGG - chr7_1:72615863-72615882 None:intergenic 35.0%
ATCAACATTGTTGAGAAGCA+TGG - chr7_1:72615940-72615959 None:intergenic 35.0%
ACATACAGTTGACAGTGATG+AGG - chr7_1:72614979-72614998 None:intergenic 40.0%
!!! TTTTGGGTTGTGATGCATGT+CGG - chr7_1:72615013-72615032 None:intergenic 40.0%
TCACAACCCAAAACCTTTCT+AGG + chr7_1:72615020-72615039 Msa1036260:CDS 40.0%
! GGAATGCCTAGAAAGGTTTT+GGG - chr7_1:72615029-72615048 None:intergenic 40.0%
! ACCACACAGGTTTTTAACAG+TGG + chr7_1:72615085-72615104 Msa1036260:CDS 40.0%
AACAAACCCACTTCTTCTTC+TGG + chr7_1:72615215-72615234 Msa1036260:CDS 40.0%
GTGAATCAAAAGCCAGTGTT+TGG + chr7_1:72615405-72615424 Msa1036260:CDS 40.0%
! GTTTTCTATGCTCCTTTGCT+TGG + chr7_1:72615447-72615466 Msa1036260:CDS 40.0%
AAGGCGAAAAAACCAAGCAA+AGG - chr7_1:72615462-72615481 None:intergenic 40.0%
TACACTTTATAGGCCTGGTT+TGG + chr7_1:72615598-72615617 Msa1036260:intron 40.0%
ACACTTTATAGGCCTGGTTT+GGG + chr7_1:72615599-72615618 Msa1036260:intron 40.0%
CAATTTCCGTATGACTTACG+CGG - chr7_1:72616154-72616173 None:intergenic 40.0%
ACATACAGTTGACAGTGATG+AGG - chr7_1:72614979-72614998 None:intergenic 40.0%
!!! TTTTGGGTTGTGATGCATGT+CGG - chr7_1:72615013-72615032 None:intergenic 40.0%
TCACAACCCAAAACCTTTCT+AGG + chr7_1:72615020-72615039 Msa1036260:CDS 40.0%
! GGAATGCCTAGAAAGGTTTT+GGG - chr7_1:72615029-72615048 None:intergenic 40.0%
! ACCACACAGGTTTTTAACAG+TGG + chr7_1:72615085-72615104 Msa1036260:CDS 40.0%
AACAAACCCACTTCTTCTTC+TGG + chr7_1:72615215-72615234 Msa1036260:CDS 40.0%
GTGAATCAAAAGCCAGTGTT+TGG + chr7_1:72615405-72615424 Msa1036260:CDS 40.0%
! GTTTTCTATGCTCCTTTGCT+TGG + chr7_1:72615447-72615466 Msa1036260:CDS 40.0%
AAGGCGAAAAAACCAAGCAA+AGG - chr7_1:72615462-72615481 None:intergenic 40.0%
TACACTTTATAGGCCTGGTT+TGG + chr7_1:72615598-72615617 Msa1036260:intron 40.0%
ACACTTTATAGGCCTGGTTT+GGG + chr7_1:72615599-72615618 Msa1036260:intron 40.0%
CAATTTCCGTATGACTTACG+CGG - chr7_1:72616154-72616173 None:intergenic 40.0%
AGTTGACAGTGATGAGGAGA+AGG - chr7_1:72614973-72614992 None:intergenic 45.0%
! GGGAATGCCTAGAAAGGTTT+TGG - chr7_1:72615030-72615049 None:intergenic 45.0%
ACATAGGGGAATGCCTAGAA+AGG - chr7_1:72615036-72615055 None:intergenic 45.0%
! AGGGACGTTTTCTGACATAG+GGG - chr7_1:72615050-72615069 None:intergenic 45.0%
! GAGGGACGTTTTCTGACATA+GGG - chr7_1:72615051-72615070 None:intergenic 45.0%
! TGAGGGACGTTTTCTGACAT+AGG - chr7_1:72615052-72615071 None:intergenic 45.0%
GCCACTGTTAAAAACCTGTG+TGG - chr7_1:72615089-72615108 None:intergenic 45.0%
TTAACAGTGGCAGTGACCAA+AGG + chr7_1:72615098-72615117 Msa1036260:CDS 45.0%
CCTTGTCCAGAAGAAGAAGT+GGG - chr7_1:72615224-72615243 None:intergenic 45.0%
TCCTTGTCCAGAAGAAGAAG+TGG - chr7_1:72615225-72615244 None:intergenic 45.0%
GAGCTCAAAACTCCAAACAC+TGG - chr7_1:72615420-72615439 None:intergenic 45.0%
!!! CTTGGTTTTTTCGCCTTCAC+CGG + chr7_1:72615465-72615484 Msa1036260:CDS 45.0%
AATTACCGAAGTGGGAACAC+CGG - chr7_1:72615487-72615506 None:intergenic 45.0%
TTTATCTCACCACCCAAACC+AGG - chr7_1:72615614-72615633 None:intergenic 45.0%
ATTCAATTCAGGCCTTCCTG+TGG + chr7_1:72616034-72616053 Msa1036260:intron 45.0%
AACAGACTTGAACCACAGGA+AGG - chr7_1:72616049-72616068 None:intergenic 45.0%
CTTGAACAGACTTGAACCAC+AGG - chr7_1:72616053-72616072 None:intergenic 45.0%
TTGTTCCTCAGCTTCCTTGT+TGG - chr7_1:72616079-72616098 None:intergenic 45.0%
AAGCTGAGGAACAAGACAAG+AGG + chr7_1:72616085-72616104 Msa1036260:CDS 45.0%
AGCTGAGGAACAAGACAAGA+GGG + chr7_1:72616086-72616105 Msa1036260:CDS 45.0%
CGCGGACAAAGCAACAAAAA+AGG - chr7_1:72616136-72616155 None:intergenic 45.0%
CTTTGTCCGCGTAAGTCATA+CGG + chr7_1:72616145-72616164 Msa1036260:three_prime_UTR 45.0%
AGTTGACAGTGATGAGGAGA+AGG - chr7_1:72614973-72614992 None:intergenic 45.0%
! GGGAATGCCTAGAAAGGTTT+TGG - chr7_1:72615030-72615049 None:intergenic 45.0%
ACATAGGGGAATGCCTAGAA+AGG - chr7_1:72615036-72615055 None:intergenic 45.0%
! AGGGACGTTTTCTGACATAG+GGG - chr7_1:72615050-72615069 None:intergenic 45.0%
! GAGGGACGTTTTCTGACATA+GGG - chr7_1:72615051-72615070 None:intergenic 45.0%
! TGAGGGACGTTTTCTGACAT+AGG - chr7_1:72615052-72615071 None:intergenic 45.0%
GCCACTGTTAAAAACCTGTG+TGG - chr7_1:72615089-72615108 None:intergenic 45.0%
TTAACAGTGGCAGTGACCAA+AGG + chr7_1:72615098-72615117 Msa1036260:CDS 45.0%
CCTTGTCCAGAAGAAGAAGT+GGG - chr7_1:72615224-72615243 None:intergenic 45.0%
TCCTTGTCCAGAAGAAGAAG+TGG - chr7_1:72615225-72615244 None:intergenic 45.0%
GAGCTCAAAACTCCAAACAC+TGG - chr7_1:72615420-72615439 None:intergenic 45.0%
!!! CTTGGTTTTTTCGCCTTCAC+CGG + chr7_1:72615465-72615484 Msa1036260:CDS 45.0%
AATTACCGAAGTGGGAACAC+CGG - chr7_1:72615487-72615506 None:intergenic 45.0%
TTTATCTCACCACCCAAACC+AGG - chr7_1:72615614-72615633 None:intergenic 45.0%
ATTCAATTCAGGCCTTCCTG+TGG + chr7_1:72616034-72616053 Msa1036260:intron 45.0%
AACAGACTTGAACCACAGGA+AGG - chr7_1:72616049-72616068 None:intergenic 45.0%
CTTGAACAGACTTGAACCAC+AGG - chr7_1:72616053-72616072 None:intergenic 45.0%
TTGTTCCTCAGCTTCCTTGT+TGG - chr7_1:72616079-72616098 None:intergenic 45.0%
AAGCTGAGGAACAAGACAAG+AGG + chr7_1:72616085-72616104 Msa1036260:CDS 45.0%
AGCTGAGGAACAAGACAAGA+GGG + chr7_1:72616086-72616105 Msa1036260:CDS 45.0%
CGCGGACAAAGCAACAAAAA+AGG - chr7_1:72616136-72616155 None:intergenic 45.0%
CTTTGTCCGCGTAAGTCATA+CGG + chr7_1:72616145-72616164 Msa1036260:three_prime_UTR 45.0%
ACTTGACTCTGCTGAGCCTT+TGG - chr7_1:72615117-72615136 None:intergenic 50.0%
ACTCAGAAGAACCTCCTCCA+TGG + chr7_1:72615174-72615193 Msa1036260:CDS 50.0%
CTCAGAAGAACCTCCTCCAT+GGG + chr7_1:72615175-72615194 Msa1036260:CDS 50.0%
! TCATTTTGAGCCCATGGAGG+AGG - chr7_1:72615188-72615207 None:intergenic 50.0%
! GCTTCATTTTGAGCCCATGG+AGG - chr7_1:72615191-72615210 None:intergenic 50.0%
! TGGGCTTCATTTTGAGCCCA+TGG - chr7_1:72615194-72615213 None:intergenic 50.0%
CCCACTTCTTCTTCTGGACA+AGG + chr7_1:72615221-72615240 Msa1036260:CDS 50.0%
GGCAATTGCAGTGATAGCAG+AGG - chr7_1:72615279-72615298 None:intergenic 50.0%
!! CTTTATAGGCCTGGTTTGGG+TGG + chr7_1:72615602-72615621 Msa1036260:intron 50.0%
GTCTGTTCAAGCAGCCAACA+AGG + chr7_1:72616062-72616081 Msa1036260:CDS 50.0%
GAGGAACAAGACAAGAGGGA+TGG + chr7_1:72616090-72616109 Msa1036260:CDS 50.0%
ACTTGACTCTGCTGAGCCTT+TGG - chr7_1:72615117-72615136 None:intergenic 50.0%
ACTCAGAAGAACCTCCTCCA+TGG + chr7_1:72615174-72615193 Msa1036260:CDS 50.0%
CTCAGAAGAACCTCCTCCAT+GGG + chr7_1:72615175-72615194 Msa1036260:CDS 50.0%
! TCATTTTGAGCCCATGGAGG+AGG - chr7_1:72615188-72615207 None:intergenic 50.0%
! GCTTCATTTTGAGCCCATGG+AGG - chr7_1:72615191-72615210 None:intergenic 50.0%
! TGGGCTTCATTTTGAGCCCA+TGG - chr7_1:72615194-72615213 None:intergenic 50.0%
CCCACTTCTTCTTCTGGACA+AGG + chr7_1:72615221-72615240 Msa1036260:CDS 50.0%
GGCAATTGCAGTGATAGCAG+AGG - chr7_1:72615279-72615298 None:intergenic 50.0%
!! CTTTATAGGCCTGGTTTGGG+TGG + chr7_1:72615602-72615621 Msa1036260:intron 50.0%
GTCTGTTCAAGCAGCCAACA+AGG + chr7_1:72616062-72616081 Msa1036260:CDS 50.0%
GAGGAACAAGACAAGAGGGA+TGG + chr7_1:72616090-72616109 Msa1036260:CDS 50.0%
ACACCATCCATGGCAGTAGC+AGG + chr7_1:72614936-72614955 Msa1036260:exon 55.0%
CTTCCTGCTACTGCCATGGA+TGG - chr7_1:72614942-72614961 None:intergenic 55.0%
AGCACTTCCTGCTACTGCCA+TGG - chr7_1:72614946-72614965 None:intergenic 55.0%
GAGTCAGGCTTAGCCCATGA+AGG - chr7_1:72615158-72615177 None:intergenic 55.0%
GGAGGAGGTTCTTCTGAGTC+AGG - chr7_1:72615173-72615192 None:intergenic 55.0%
CTTCACCGGTGTTCCCACTT+CGG + chr7_1:72615479-72615498 Msa1036260:CDS 55.0%
AGCAGCCAACAAGGAAGCTG+AGG + chr7_1:72616071-72616090 Msa1036260:CDS 55.0%
ACACCATCCATGGCAGTAGC+AGG + chr7_1:72614936-72614955 Msa1036260:exon 55.0%
CTTCCTGCTACTGCCATGGA+TGG - chr7_1:72614942-72614961 None:intergenic 55.0%
AGCACTTCCTGCTACTGCCA+TGG - chr7_1:72614946-72614965 None:intergenic 55.0%
GAGTCAGGCTTAGCCCATGA+AGG - chr7_1:72615158-72615177 None:intergenic 55.0%
GGAGGAGGTTCTTCTGAGTC+AGG - chr7_1:72615173-72615192 None:intergenic 55.0%
CTTCACCGGTGTTCCCACTT+CGG + chr7_1:72615479-72615498 Msa1036260:CDS 55.0%
AGCAGCCAACAAGGAAGCTG+AGG + chr7_1:72616071-72616090 Msa1036260:CDS 55.0%
CGAAGTGGGAACACCGGTGA+AGG - chr7_1:72615481-72615500 None:intergenic 60.0%
CGAAGTGGGAACACCGGTGA+AGG - chr7_1:72615481-72615500 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 72614927 72616351 72614927 ID=Msa1036260;Name=Msa1036260
chr7_1 mRNA 72614927 72616351 72614927 ID=Msa1036260-mRNA-1;Parent=Msa1036260;Name=Msa1036260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=18|1|1|1|1|1|3|232|182
chr7_1 exon 72614927 72615301 72614927 ID=Msa1036260-mRNA-1:exon:17684;Parent=Msa1036260-mRNA-1
chr7_1 exon 72615384 72615500 72615384 ID=Msa1036260-mRNA-1:exon:17685;Parent=Msa1036260-mRNA-1
chr7_1 exon 72616045 72616351 72616045 ID=Msa1036260-mRNA-1:exon:17686;Parent=Msa1036260-mRNA-1
chr7_1 five_prime_UTR 72614927 72614944 72614927 ID=Msa1036260-mRNA-1:five_prime_utr;Parent=Msa1036260-mRNA-1
chr7_1 CDS 72614945 72615301 72614945 ID=Msa1036260-mRNA-1:cds;Parent=Msa1036260-mRNA-1
chr7_1 CDS 72615384 72615500 72615384 ID=Msa1036260-mRNA-1:cds;Parent=Msa1036260-mRNA-1
chr7_1 CDS 72616045 72616119 72616045 ID=Msa1036260-mRNA-1:cds;Parent=Msa1036260-mRNA-1
chr7_1 three_prime_UTR 72616120 72616351 72616120 ID=Msa1036260-mRNA-1:three_prime_utr;Parent=Msa1036260-mRNA-1
Gene Sequence

>Msa1036260

ATGGCAGTAGCAGGAAGTGCTGCTACCTTCTCCTCATCACTGTCAACTGTATGTTTGTTACAAAACCGACATGCATCACAACCCAAAACCTTTCTAGGCATTCCCCTATGTCAGAAAACGTCCCTCAGTAACAAAAAATCACCACACAGGTTTTTAACAGTGGCAGTGACCAAAGGCTCAGCAGAGTCAAGTAAATCCGATGAAAAAATACCTTCATGGGCTAAGCCTGACTCAGAAGAACCTCCTCCATGGGCTCAAAATGAAGCCCAAAACAAACCCACTTCTTCTTCTGGACAAGGATTTGTTATTCCGTTTTATGTTTATTTACTTGCCTCTGCTATCACTGCAATTGCCGCTATTGGTTCCATATTTGAGTATGTGAATCAAAAGCCAGTGTTTGGAGTTTTGAGCTCTGATAGTGTTTTCTATGCTCCTTTGCTTGGTTTTTTCGCCTTCACCGGTGTTCCCACTTCGGCCTTCCTGTGGTTCAAGTCTGTTCAAGCAGCCAACAAGGAAGCTGAGGAACAAGACAAGAGGGATGGTTATTAA

Protein sequence

>Msa1036260

MAVAGSAATFSSSLSTVCLLQNRHASQPKTFLGIPLCQKTSLSNKKSPHRFLTVAVTKGSAESSKSDEKIPSWAKPDSEEPPPWAQNEAQNKPTSSSGQGFVIPFYVYLLASAITAIAAIGSIFEYVNQKPVFGVLSSDSVFYAPLLGFFAFTGVPTSAFLWFKSVQAANKEAEEQDKRDGY*