AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0806240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0806240 MtrunA17_Chr1g0170261 82.609 69 9 2 3 68 338 406 1.48e-31 114
Msa0806240 MtrunA17_Chr5g0439971 78.261 69 12 2 3 68 341 409 1.20e-29 108
Msa0806240 MtrunA17_Chr3g0119031 78.261 69 12 2 3 68 336 404 1.31e-29 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0806240 AT5G06600.2 75.362 69 14 2 3 68 335 403 4.05e-28 105
Msa0806240 AT5G06600.1 75.362 69 14 2 3 68 336 404 4.09e-28 105
Msa0806240 AT5G06600.3 75.362 69 14 2 3 68 336 404 4.45e-28 105
Msa0806240 AT3G11910.4 73.913 69 15 2 3 68 334 402 4.84e-27 102
Msa0806240 AT3G11910.2 73.913 69 15 2 3 68 334 402 4.84e-27 102
Msa0806240 AT3G11910.3 73.913 69 15 2 3 68 335 403 4.84e-27 102
Msa0806240 AT3G11910.1 73.913 69 15 2 3 68 335 403 4.84e-27 102

Find 71 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGCGAGACACTATGGTTAA+AGG 0.267326 5_3:-24118078 None:intergenic
TCACTATTGGTGGCTATAAA+TGG 0.267592 5_3:-24123329 Msa0806240:intron
AAAGAGTTAACCAAATCTTT+TGG 0.276067 5_3:-24118806 Msa0806240:five_prime_UTR
TGACTAACCTTTCTGAAATA+AGG 0.285682 5_3:+24119006 None:intergenic
ATGATGTCTAAGAACTTAAC+AGG 0.300249 5_3:-24118754 Msa0806240:five_prime_UTR
AAGAAGGGGAAGATGGGTTT+TGG 0.304871 5_3:+24124378 None:intergenic
CACCACCACTCCTCCGTTAG+AGG 0.318183 5_3:-24124225 Msa0806240:intron
TGCAGAGCAGTATGGTTTAC+AGG 0.343261 5_3:-24118292 Msa0806240:intron
TCTGATGCTGTTGTTGTTGA+AGG 0.347454 5_3:-24123968 Msa0806240:five_prime_UTR
CAGCTTAACTGTGGTCAATC+AGG 0.357604 5_3:-24123089 Msa0806240:five_prime_UTR
TGCGCAAAGATCTTGATTAC+TGG 0.363993 5_3:-24119125 Msa0806240:five_prime_UTR
TGTATCCCATCCAAAAGATT+TGG 0.366228 5_3:+24118796 None:intergenic
GATGCAGGTTCGATGCCTTA+TGG 0.373749 5_3:-24123133 Msa0806240:five_prime_UTR
TTAATGCGCGTGAGAGTGAT+TGG 0.411208 5_3:-24119241 Msa0806240:five_prime_UTR
AACATCGGAAAATGTTTCTT+CGG 0.415676 5_3:+24123353 None:intergenic
ATGAAGCGAGCGAAGAAACT+AGG 0.416385 5_3:+24124270 None:intergenic
ACAACAACAGCATCAGAGTT+AGG 0.423777 5_3:+24123974 None:intergenic
TTCTTCAGCTTCAGTTAAAA+CGG 0.445451 5_3:-24118115 Msa0806240:CDS
ATGATTTGCGCGAGACACTA+TGG 0.448946 5_3:-24118085 Msa0806240:CDS
AAGTATCATGCAGAGCAGTA+TGG 0.452897 5_3:-24118300 Msa0806240:CDS
TAATGCGCGTGAGAGTGATT+GGG 0.455780 5_3:-24119240 Msa0806240:five_prime_UTR
TATATAGATGTTACAGATGC+AGG 0.456399 5_3:-24123148 Msa0806240:five_prime_UTR
ACTGAAAATGATATGCCATC+TGG 0.457124 5_3:-24118894 Msa0806240:five_prime_UTR
TGTTCAGCATTGTTCCCCTT+CGG 0.468250 5_3:+24123181 None:intergenic
AGTAAATATTCCGTCAGAAA+AGG 0.469439 5_3:-24123061 Msa0806240:intron
TTTAACTGAAGCTGAAGAAC+AGG 0.471336 5_3:+24118119 None:intergenic
ATAAGCGAAGAAGGGGAAGA+TGG 0.472328 5_3:+24124371 None:intergenic
TCACATTCCTTATTTCAGAA+AGG 0.489887 5_3:-24119013 Msa0806240:intron
TCATGTAACAAGTAGCTCCT+TGG 0.493061 5_3:+24119058 None:intergenic
TAAGCGAAGAAGGGGAAGAT+GGG 0.495142 5_3:+24124372 None:intergenic
CAGGTTCGATGCCTTATGGT+TGG 0.516574 5_3:-24123129 Msa0806240:five_prime_UTR
TATTATTCATATCTACATTG+AGG 0.521221 5_3:+24123944 None:intergenic
GCAAATCTAGTCCAACCATA+AGG 0.541036 5_3:+24123118 None:intergenic
AGGGTTTGCGAATGATGAAA+GGG 0.541124 5_3:+24124290 None:intergenic
TAGGGTTTGCGAATGATGAA+AGG 0.544762 5_3:+24124289 None:intergenic
CTGAAAATGATATGCCATCT+GGG 0.544979 5_3:-24118893 Msa0806240:five_prime_UTR
GCGCAAAGATCTTGATTACT+GGG 0.546659 5_3:-24119124 Msa0806240:five_prime_UTR
TGAAGCGAGCGAAGAAACTA+GGG 0.550033 5_3:+24124271 None:intergenic
TAGATTCAGCTTGATGTCAA+AGG 0.554317 5_3:-24118387 Msa0806240:CDS
TCCACAACATAGCCTCTACT+AGG 0.563161 5_3:+24119180 None:intergenic
GCAGTTGAAGATCCGCCAAT+GGG 0.564312 5_3:-24123412 Msa0806240:five_prime_UTR
GTGGAAGTAGAACAGCTTGA+GGG 0.565647 5_3:-24118330 Msa0806240:CDS
GGCAGTTGAAGATCCGCCAA+TGG 0.574785 5_3:-24123413 Msa0806240:five_prime_UTR
AACTGAAGCTGAAGAACAGG+TGG 0.576147 5_3:+24118122 None:intergenic
AATGCGCGTGAGAGTGATTG+GGG 0.581175 5_3:-24119239 Msa0806240:five_prime_UTR
CCATGTGAATCTCCCATTGG+CGG 0.591290 5_3:+24123400 None:intergenic
AACAAACTCTGTAATGCAGA+GGG 0.597970 5_3:+24118865 None:intergenic
GCGGATACTGATCTTTCCGA+AGG 0.601985 5_3:-24123197 Msa0806240:five_prime_UTR
CACAAGTACAGTGGATGCTG+TGG 0.605419 5_3:-24123434 Msa0806240:five_prime_UTR
CCGCCAATGGGAGATTCACA+TGG 0.606625 5_3:-24123400 Msa0806240:five_prime_UTR
AAAGCTAGAAGACAAAATGA+AGG 0.607281 5_3:-24118720 Msa0806240:intron
CGGATACTGATCTTTCCGAA+GGG 0.607412 5_3:-24123196 Msa0806240:five_prime_UTR
AGTCCATGTGAATCTCCCAT+TGG 0.607963 5_3:+24123397 None:intergenic
TGTGGAAGTAGAACAGCTTG+AGG 0.609687 5_3:-24118331 Msa0806240:CDS
TACCTCTAACGGAGGAGTGG+TGG 0.610470 5_3:+24124223 None:intergenic
TGCAGAGGGATGCTCCCAGA+TGG 0.612724 5_3:+24118879 None:intergenic
GGATCATACAATTCAGCAAG+AGG 0.617299 5_3:+24119201 None:intergenic
ACGCGATTGATTACCTCTAA+CGG 0.618741 5_3:+24124212 None:intergenic
AAACAAACTCTGTAATGCAG+AGG 0.624105 5_3:+24118864 None:intergenic
TCCTAGTAGAGGCTATGTTG+TGG 0.625984 5_3:-24119181 Msa0806240:five_prime_UTR
TGCACAGTTCAGCTTAACTG+TGG 0.636127 5_3:-24123098 Msa0806240:five_prime_UTR
AGGAGTGGTGGTGATAGTCA+TGG 0.638641 5_3:+24124235 None:intergenic
GAATTGTATGATCCTAGTAG+AGG 0.640831 5_3:-24119192 Msa0806240:five_prime_UTR
GATTACCTCTAACGGAGGAG+TGG 0.641206 5_3:+24124220 None:intergenic
GTAGCAACAGAATCTTGAAG+TGG 0.641625 5_3:-24124011 Msa0806240:intron
AGCAGAAAACACAAGTACAG+TGG 0.653432 5_3:-24123443 Msa0806240:five_prime_UTR
CGATTGATTACCTCTAACGG+AGG 0.662494 5_3:+24124215 None:intergenic
GCCACCAATAGTGAAAACAT+CGG 0.685681 5_3:+24123338 None:intergenic
GGATACTGATCTTTCCGAAG+GGG 0.700894 5_3:-24123195 Msa0806240:five_prime_UTR
TGATGTCTAAGAACTTAACA+GGG 0.721619 5_3:-24118753 Msa0806240:five_prime_UTR
GGAAGATAGATGCATACTTG+AGG 0.738417 5_3:-24119160 Msa0806240:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGAATAATAAATGTTTA+TGG - chr5_3:24118558-24118577 Msa0806240:intron 10.0%
!! TAAATATTGAATATTATACA+TGG + chr5_3:24119217-24119236 None:intergenic 10.0%
!! ATTTATATTCAAAACTATTA+AGG - chr5_3:24119820-24119839 Msa0806240:intron 10.0%
!!! TAGTATTAAATTTTTTTTTG+TGG - chr5_3:24121187-24121206 Msa0806240:intron 10.0%
!!! AGTGTCAATTTAATTTTTTT+AGG - chr5_3:24118951-24118970 Msa0806240:intron 15.0%
!!! GTGTCAATTTAATTTTTTTA+GGG - chr5_3:24118952-24118971 Msa0806240:intron 15.0%
!! TGTAAAAATTAAGAAATGAA+GGG - chr5_3:24119580-24119599 Msa0806240:intron 15.0%
!!! CTTTTGAAATTGATTTATTA+TGG - chr5_3:24119657-24119676 Msa0806240:intron 15.0%
!! AAGAAATAAATCATACAATA+AGG - chr5_3:24120331-24120350 Msa0806240:intron 15.0%
!! GTATGAACTAAATAAAAATT+TGG - chr5_3:24120437-24120456 Msa0806240:intron 15.0%
!! CTTATACAATAAAAATACAT+AGG - chr5_3:24122200-24122219 Msa0806240:intron 15.0%
!! ATTTATAATACAATATTCTC+TGG - chr5_3:24122796-24122815 Msa0806240:intron 15.0%
!! AAAATATGAAGAAAAATAGT+AGG + chr5_3:24124276-24124295 None:intergenic 15.0%
!!! TTTTTCTTCATATTTTAGAT+TGG - chr5_3:24124280-24124299 Msa0806240:five_prime_UTR 15.0%
!! TATTATTCATATCTACATTG+AGG + chr5_3:24118550-24118569 None:intergenic 20.0%
!! TGAATAATAAATGTTTATGG+AGG - chr5_3:24118561-24118580 Msa0806240:intron 20.0%
!!! TTTCTTTTGAATTCATGTTA+TGG - chr5_3:24118674-24118693 Msa0806240:intron 20.0%
!!! TTTTGTTATTGGAAATGTTA+GGG - chr5_3:24118697-24118716 Msa0806240:intron 20.0%
!!! ATTCTTTTGAATTCTTGTTA+TGG - chr5_3:24118800-24118819 Msa0806240:five_prime_UTR 20.0%
!! TTGATTATGTTGTATTTAAG+TGG - chr5_3:24119491-24119510 Msa0806240:intron 20.0%
!! GTGTAAAAATTAAGAAATGA+AGG - chr5_3:24119579-24119598 Msa0806240:intron 20.0%
!! AGATCATCAAAAATCTTATT+TGG - chr5_3:24120039-24120058 Msa0806240:intron 20.0%
!!! TATTTATTTAAACCGTTTTG+CGG + chr5_3:24120078-24120097 None:intergenic 20.0%
!! GAGAAAAAAGAAAAAAATAG+AGG - chr5_3:24120363-24120382 Msa0806240:intron 20.0%
!!! CATAAAAAGTACATTAAGAT+TGG - chr5_3:24120466-24120485 Msa0806240:intron 20.0%
!!! AGGAATTATCAATTTTTTAG+CGG + chr5_3:24120496-24120515 None:intergenic 20.0%
!! TAAATTCCTATACAATATAG+CGG - chr5_3:24121282-24121301 Msa0806240:intron 20.0%
!! ATTGGATATTTAATAACACT+CGG - chr5_3:24121319-24121338 Msa0806240:intron 20.0%
!!! TATTTTATGTGTGAATGTTA+TGG + chr5_3:24121600-24121619 None:intergenic 20.0%
!! CATTTACAAAAAAAGTTGTT+TGG + chr5_3:24121644-24121663 None:intergenic 20.0%
!! TTAGATTGTATCATTGTAAT+TGG - chr5_3:24121801-24121820 Msa0806240:intron 20.0%
!! ATACAATAAAAATACATAGG+AGG - chr5_3:24122203-24122222 Msa0806240:intron 20.0%
!! AAAGATAACATTTCTAATGT+CGG + chr5_3:24122759-24122778 None:intergenic 20.0%
!! GAAATTCAGTAAAGAAAAAA+TGG + chr5_3:24123056-24123075 None:intergenic 20.0%
!!! TTTAATTTTTTTCCGAAAGA+AGG - chr5_3:24123522-24123541 Msa0806240:intron 20.0%
!! ATGTTTAATATTGTTTGTTC+AGG - chr5_3:24123554-24123573 Msa0806240:intron 20.0%
!!! ACAAGAAAAGAATCATTTTA+TGG - chr5_3:24124001-24124020 Msa0806240:five_prime_UTR 20.0%
!!! CATTTTATGGTAGTATTTTT+TGG - chr5_3:24124014-24124033 Msa0806240:intron 20.0%
!! ATGAATAATTGAAATTCAGA+AGG + chr5_3:24124082-24124101 None:intergenic 20.0%
!!! TTTGTTTGATGATGATTACT+AGG - chr5_3:24118407-24118426 Msa0806240:intron 25.0%
!!! TTGTTTGATGATGATTACTA+GGG - chr5_3:24118408-24118427 Msa0806240:intron 25.0%
!!! ATTTTTGGAGAAGAAGTTTA+TGG - chr5_3:24118601-24118620 Msa0806240:intron 25.0%
!!! TCATGTTATGGTTTTGTTAT+TGG - chr5_3:24118686-24118705 Msa0806240:intron 25.0%
!!! GTTTTGTTATTGGAAATGTT+AGG - chr5_3:24118696-24118715 Msa0806240:intron 25.0%
!!! TTTGTTATTGGAAATGTTAG+GGG - chr5_3:24118698-24118717 Msa0806240:intron 25.0%
!!! TCTTGTTATGGTTTTGTTAT+TGG - chr5_3:24118812-24118831 Msa0806240:five_prime_UTR 25.0%
! TCAATATTTATGCGTATCAT+AGG - chr5_3:24119227-24119246 Msa0806240:five_prime_UTR 25.0%
! CAATATTTATGCGTATCATA+GGG - chr5_3:24119228-24119247 Msa0806240:five_prime_UTR 25.0%
! AATATTTATGCGTATCATAG+GGG - chr5_3:24119229-24119248 Msa0806240:five_prime_UTR 25.0%
! AAATGTTTGAGAACCTTAAT+AGG - chr5_3:24119551-24119570 Msa0806240:intron 25.0%
! TCTATATATATTGCTTTGAC+TGG - chr5_3:24119626-24119645 Msa0806240:intron 25.0%
! TGATACATTAGAGTAAGTTA+AGG - chr5_3:24119727-24119746 Msa0806240:intron 25.0%
!! AAATCTTATTTGGCAAATAG+TGG - chr5_3:24120049-24120068 Msa0806240:intron 25.0%
! TTAGTTCATACAATTCTCAT+CGG + chr5_3:24120428-24120447 None:intergenic 25.0%
! GTATCATAGCTTATCAATTT+GGG + chr5_3:24120776-24120795 None:intergenic 25.0%
! AGATTGTTTGTTTAATAGCA+TGG - chr5_3:24121159-24121178 Msa0806240:intron 25.0%
! TTGGATATTTAATAACACTC+GGG - chr5_3:24121320-24121339 Msa0806240:intron 25.0%
! AATATGTAAGAGAAAAAGCA+AGG + chr5_3:24121389-24121408 None:intergenic 25.0%
!!! GCTTTTTCTCTTACATATTA+CGG - chr5_3:24121390-24121409 Msa0806240:intron 25.0%
! ATACTTCAATCACACTTAAT+TGG + chr5_3:24121484-24121503 None:intergenic 25.0%
!!! ATGTTTGTTGTAGGTTATTT+TGG - chr5_3:24121769-24121788 Msa0806240:intron 25.0%
!!! TGTTTGTTGTAGGTTATTTT+GGG - chr5_3:24121770-24121789 Msa0806240:intron 25.0%
! ATTGTATCATTGTAATTGGA+AGG - chr5_3:24121805-24121824 Msa0806240:intron 25.0%
! AATTGGAATAGAAATTCACA+GGG + chr5_3:24121871-24121890 None:intergenic 25.0%
! AAATTGGAATAGAAATTCAC+AGG + chr5_3:24121872-24121891 None:intergenic 25.0%
!! ACTCAAATTTAAGATGACAA+AGG - chr5_3:24121895-24121914 Msa0806240:intron 25.0%
!! ACATCTACATGTGATTTTTA+AGG - chr5_3:24122331-24122350 Msa0806240:intron 25.0%
!!! CATGTGATTTTTAAGGATAT+TGG - chr5_3:24122338-24122357 Msa0806240:intron 25.0%
! TTAGTGTTAGATTATCAGTT+TGG - chr5_3:24122542-24122561 Msa0806240:intron 25.0%
! TAGTGTTAGATTATCAGTTT+GGG - chr5_3:24122543-24122562 Msa0806240:intron 25.0%
!! AAAGAGTTAACCAAATCTTT+TGG - chr5_3:24123685-24123704 Msa0806240:intron 25.0%
!!! TGAAGGTAAAGGTTTTTTAA+TGG - chr5_3:24123788-24123807 Msa0806240:intron 25.0%
!!! GTTTCTCATAGTTATTTTGT+AGG - chr5_3:24123813-24123832 Msa0806240:intron 25.0%
! ATTCAATATAGTTCATATGG+TGG + chr5_3:24123958-24123977 None:intergenic 25.0%
! TGCATTCAATATAGTTCATA+TGG + chr5_3:24123961-24123980 None:intergenic 25.0%
!!! TTAACCATGTATTTTAGCTT+TGG - chr5_3:24124229-24124248 Msa0806240:five_prime_UTR 25.0%
!! CATGATTGTGATTTCATTTT+AGG - chr5_3:24124316-24124335 Msa0806240:five_prime_UTR 25.0%
TGTGAATAATAAGCGAAGAA+GGG + chr5_3:24118131-24118150 None:intergenic 30.0%
ATGTGAATAATAAGCGAAGA+AGG + chr5_3:24118132-24118151 None:intergenic 30.0%
! TTACTAGGGTTTAAGATATC+TGG - chr5_3:24118422-24118441 Msa0806240:intron 30.0%
!! ATGCAATGTGTGGTTATTTT+TGG - chr5_3:24118586-24118605 Msa0806240:intron 30.0%
!! GGTGTCAACTTAATTTGTAA+CGG - chr5_3:24118741-24118760 Msa0806240:five_prime_UTR 30.0%
AAGGACAAAAATCAAACTAG+CGG + chr5_3:24119008-24119027 None:intergenic 30.0%
! GATTTTTGTCCTTTTCGTAT+TGG - chr5_3:24119015-24119034 Msa0806240:five_prime_UTR 30.0%
AACATCGGAAAATGTTTCTT+CGG + chr5_3:24119141-24119160 None:intergenic 30.0%
! TTTTCCGATGTTTTCACTAT+TGG - chr5_3:24119149-24119168 Msa0806240:five_prime_UTR 30.0%
CTTATATGATTTAAACGTGC+AGG - chr5_3:24119272-24119291 Msa0806240:intron 30.0%
TATATAGATGTTACAGATGC+AGG - chr5_3:24119343-24119362 Msa0806240:intron 30.0%
AGTAAATATTCCGTCAGAAA+AGG - chr5_3:24119430-24119449 Msa0806240:intron 30.0%
! AGAAGAATAACCTTTTCTGA+CGG + chr5_3:24119443-24119462 None:intergenic 30.0%
! TTTTACACGAACTCCTATTA+AGG + chr5_3:24119567-24119586 None:intergenic 30.0%
ATTAAGAAATGAAGGGCAAT+AGG - chr5_3:24119587-24119606 Msa0806240:intron 30.0%
TTAAGAAATGAAGGGCAATA+GGG - chr5_3:24119588-24119607 Msa0806240:intron 30.0%
! AATTGATTTATTATGGCCCT+AGG - chr5_3:24119664-24119683 Msa0806240:intron 30.0%
!! TTATGTTGGGTTGAAATACT+AGG - chr5_3:24119687-24119706 Msa0806240:intron 30.0%
TAGTTAAGGGATTAATCAGA+TGG - chr5_3:24119766-24119785 Msa0806240:intron 30.0%
CCAAACATGGAACTAATAAT+AGG + chr5_3:24119855-24119874 None:intergenic 30.0%
CCTATTATTAGTTCCATGTT+TGG - chr5_3:24119852-24119871 Msa0806240:intron 30.0%
ATCAATTCTACCTAAAGCTA+AGG - chr5_3:24119994-24120013 Msa0806240:intron 30.0%
TCAATTCTACCTAAAGCTAA+GGG - chr5_3:24119995-24120014 Msa0806240:intron 30.0%
TGATCTGATATAAGTAACAC+TGG + chr5_3:24120025-24120044 None:intergenic 30.0%
ACTTCGATATTTCCAAATAG+CGG + chr5_3:24120555-24120574 None:intergenic 30.0%
ATAACTCATCCTTACAAAAC+AGG - chr5_3:24120618-24120637 Msa0806240:intron 30.0%
! CTCTTTTCACAAATTCTCAT+CGG - chr5_3:24120662-24120681 Msa0806240:intron 30.0%
GGTATCATAGCTTATCAATT+TGG + chr5_3:24120777-24120796 None:intergenic 30.0%
!! ACGATTTTGACGATGAAAAA+AGG + chr5_3:24120982-24121001 None:intergenic 30.0%
TAACTGGAAGCTAAAATACT+AGG + chr5_3:24121577-24121596 None:intergenic 30.0%
TGAACGTAAGTGATTATGTT+TGG + chr5_3:24121671-24121690 None:intergenic 30.0%
!! AAAGTTAGGATGTTTGTTGT+AGG - chr5_3:24121760-24121779 Msa0806240:intron 30.0%
ATTGGAATAGAAATTCACAG+GGG + chr5_3:24121870-24121889 None:intergenic 30.0%
CTTAAATTTGAGTGCGAAAT+TGG + chr5_3:24121888-24121907 None:intergenic 30.0%
! ACAAAGCACTTAAACTTGTA+TGG + chr5_3:24121942-24121961 None:intergenic 30.0%
TTTGAACAACTATTCTTAGC+AGG - chr5_3:24121961-24121980 Msa0806240:intron 30.0%
!!! TTTTTTCAATGCATGAACAC+TGG - chr5_3:24122152-24122171 Msa0806240:intron 30.0%
! TGTTGGTGCTTTAATGAAAT+AGG - chr5_3:24122234-24122253 Msa0806240:intron 30.0%
! GACCAAATACTTTTCTTGTA+AGG - chr5_3:24122305-24122324 Msa0806240:intron 30.0%
!! GTCCTTACAAGAAAAGTATT+TGG + chr5_3:24122310-24122329 None:intergenic 30.0%
ATTGGTTACAACTTACAATG+AGG - chr5_3:24122356-24122375 Msa0806240:intron 30.0%
TTACAATGAGGTTTATTCCA+TGG - chr5_3:24122368-24122387 Msa0806240:intron 30.0%
!!! TTTTTTTTATCACAGCCTGA+TGG - chr5_3:24122497-24122516 Msa0806240:intron 30.0%
!!! TTTTTTTATCACAGCCTGAT+GGG - chr5_3:24122498-24122517 Msa0806240:intron 30.0%
! GCATCAGAATAATCTTTTGT+TGG - chr5_3:24122677-24122696 Msa0806240:intron 30.0%
! TATAACATAGTTCTGTTGTG+TGG - chr5_3:24122865-24122884 Msa0806240:intron 30.0%
! TTATGGATTGTTGAGAGAAA+AGG + chr5_3:24122933-24122952 None:intergenic 30.0%
TCTTGACAAGTGAACATTTA+TGG + chr5_3:24122950-24122969 None:intergenic 30.0%
AGAACAGAAATACAAGGAAA+TGG + chr5_3:24123017-24123036 None:intergenic 30.0%
AAAGACAGAACAGAAATACA+AGG + chr5_3:24123023-24123042 None:intergenic 30.0%
!!! TCATGTTTTTTGTCTTTCTG+AGG - chr5_3:24123145-24123164 Msa0806240:five_prime_UTR 30.0%
! TCTTTCTGAGGATAATTGTT+TGG - chr5_3:24123157-24123176 Msa0806240:five_prime_UTR 30.0%
! TGTGTTTCTGCAATATCAAA+AGG + chr5_3:24123222-24123241 None:intergenic 30.0%
CATGACTCAAAAAAAGAAAC+TGG - chr5_3:24123392-24123411 Msa0806240:five_prime_UTR 30.0%
AAAAAAGAAACTGGTTGTGT+CGG - chr5_3:24123401-24123420 Msa0806240:five_prime_UTR 30.0%
! TCACATTCCTTATTTCAGAA+AGG - chr5_3:24123478-24123497 Msa0806240:intron 30.0%
!! TGACTAACCTTTCTGAAATA+AGG + chr5_3:24123488-24123507 None:intergenic 30.0%
! AGTTAACCAAATCTTTTGGA+TGG - chr5_3:24123689-24123708 Msa0806240:intron 30.0%
! GTTAACCAAATCTTTTGGAT+GGG - chr5_3:24123690-24123709 Msa0806240:intron 30.0%
ATGATGTCTAAGAACTTAAC+AGG - chr5_3:24123737-24123756 Msa0806240:intron 30.0%
TGATGTCTAAGAACTTAACA+GGG - chr5_3:24123738-24123757 Msa0806240:intron 30.0%
AAAGCTAGAAGACAAAATGA+AGG - chr5_3:24123771-24123790 Msa0806240:intron 30.0%
AGAAGACAAAATGAAGGTAA+AGG - chr5_3:24123777-24123796 Msa0806240:intron 30.0%
TGTCTCGAAGATTATTATTG+AGG - chr5_3:24123877-24123896 Msa0806240:intron 30.0%
CTATATTGAATGCATGAATG+TGG - chr5_3:24123967-24123986 Msa0806240:five_prime_UTR 30.0%
!!! ATGGTAGTATTTTTTGGCTT+TGG - chr5_3:24124020-24124039 Msa0806240:intron 30.0%
GAAGAATGATGTGTAAACAA+TGG + chr5_3:24124049-24124068 None:intergenic 30.0%
! TGCTTCTTTTGATAAGTATG+TGG - chr5_3:24124142-24124161 Msa0806240:intron 30.0%
ACAACCAAAGCTAAAATACA+TGG + chr5_3:24124236-24124255 None:intergenic 30.0%
!! TTCATTTTAGGAAGCAAGAA+AGG - chr5_3:24124328-24124347 Msa0806240:five_prime_UTR 30.0%
TTCTTCAGCTTCAGTTAAAA+CGG - chr5_3:24124376-24124395 Msa0806240:intron 30.0%
GTGAATAATAAGCGAAGAAG+GGG + chr5_3:24118130-24118149 None:intergenic 35.0%
ATGCGGAAATCGAAATCTTT+CGG + chr5_3:24118331-24118350 None:intergenic 35.0%
ATTGCAAGAACAACGAAATG+CGG + chr5_3:24118348-24118367 None:intergenic 35.0%
GATTTCAGTGAATGAATGTG+TGG - chr5_3:24118920-24118939 Msa0806240:intron 35.0%
GAACTACTACCAATACGAAA+AGG + chr5_3:24119027-24119046 None:intergenic 35.0%
! GGACTATTGACAATTTTTCG+AGG - chr5_3:24119112-24119131 Msa0806240:five_prime_UTR 35.0%
! TCACTATTGGTGGCTATAAA+TGG - chr5_3:24119162-24119181 Msa0806240:five_prime_UTR 35.0%
ATATGATTTAAACGTGCAGG+CGG - chr5_3:24119275-24119294 Msa0806240:intron 35.0%
!! TGAAATTTGCTCCCTTTTGT+GGG - chr5_3:24119523-24119542 Msa0806240:intron 35.0%
TTTCAACCCAACATAACCTA+GGG + chr5_3:24119683-24119702 None:intergenic 35.0%
ATTTCAACCCAACATAACCT+AGG + chr5_3:24119684-24119703 None:intergenic 35.0%
!! ACCCATTGATTCTGTAGTTA+AGG - chr5_3:24119752-24119771 Msa0806240:intron 35.0%
CCCTTAACTACAGAATCAAT+GGG + chr5_3:24119756-24119775 None:intergenic 35.0%
!! CCCATTGATTCTGTAGTTAA+GGG - chr5_3:24119753-24119772 Msa0806240:intron 35.0%
TCCCTTAACTACAGAATCAA+TGG + chr5_3:24119757-24119776 None:intergenic 35.0%
TTAAGGGATTAATCAGATGG+AGG - chr5_3:24119769-24119788 Msa0806240:intron 35.0%
ATGGAGGATAGTCTATTTGT+GGG - chr5_3:24119785-24119804 Msa0806240:intron 35.0%
GATTTGACCACACATTTGTT+AGG - chr5_3:24119908-24119927 Msa0806240:intron 35.0%
TTAGCTTCCAACTTCAACAT+TGG - chr5_3:24119958-24119977 Msa0806240:intron 35.0%
TTCCTCTATTCATGCCATTA+TGG - chr5_3:24120511-24120530 Msa0806240:intron 35.0%
TCCTCTATTCATGCCATTAT+GGG - chr5_3:24120512-24120531 Msa0806240:intron 35.0%
! CATATCGGTTATACCCATAA+TGG + chr5_3:24120528-24120547 None:intergenic 35.0%
! TTACAAAGGCCTGTTTTGTA+AGG + chr5_3:24120630-24120649 None:intergenic 35.0%
TTACAAAACAGGCCTTTGTA+AGG - chr5_3:24120629-24120648 Msa0806240:intron 35.0%
CGATGAGAATTTGTGAAAAG+AGG + chr5_3:24120664-24120683 None:intergenic 35.0%
TACCATGTTGAGATGTATCT+CGG - chr5_3:24120793-24120812 Msa0806240:intron 35.0%
TGTATCTCGGTTGTTAATAG+CGG - chr5_3:24120806-24120825 Msa0806240:intron 35.0%
CATCGTCAAAATCGTACAAT+CGG - chr5_3:24120987-24121006 Msa0806240:intron 35.0%
GATTGTACTGTGAAAAACTG+AGG - chr5_3:24121117-24121136 Msa0806240:intron 35.0%
CATTTCAGCATTGTTAACAG+AGG - chr5_3:24121250-24121269 Msa0806240:intron 35.0%
GCTATACCGCTATATTGTAT+AGG + chr5_3:24121291-24121310 None:intergenic 35.0%
ATAACACTCGGGTATATGTT+TGG - chr5_3:24121331-24121350 Msa0806240:intron 35.0%
!! TTTTCAGGAGAATTTTGGAG+GGG + chr5_3:24121553-24121572 None:intergenic 35.0%
!! CTTTTCAGGAGAATTTTGGA+GGG + chr5_3:24121554-24121573 None:intergenic 35.0%
!! TAGGCTTTTCAGGAGAATTT+TGG + chr5_3:24121558-24121577 None:intergenic 35.0%
! GCTAAAATACTAGGCTTTTC+AGG + chr5_3:24121568-24121587 None:intergenic 35.0%
TGTGTGAATGTTATGGTAAC+TGG + chr5_3:24121593-24121612 None:intergenic 35.0%
TTATCGAGAGTGGTAAAGTT+AGG - chr5_3:24121746-24121765 Msa0806240:intron 35.0%
TATGGAGGATATTGTCAAGA+AGG + chr5_3:24121924-24121943 None:intergenic 35.0%
AAGCACTTAAACTTGTATGG+AGG + chr5_3:24121939-24121958 None:intergenic 35.0%
TTGTGTTTGCATCAAAAGAG+GGG + chr5_3:24122043-24122062 None:intergenic 35.0%
CTTGTGTTTGCATCAAAAGA+GGG + chr5_3:24122044-24122063 None:intergenic 35.0%
ACTTGTGTTTGCATCAAAAG+AGG + chr5_3:24122045-24122064 None:intergenic 35.0%
GGTGCTTTAATGAAATAGGA+TGG - chr5_3:24122238-24122257 Msa0806240:intron 35.0%
CCTATACATGACATCTTCTA+CGG + chr5_3:24122284-24122303 None:intergenic 35.0%
! TCTTTTGTTGGAAACCTAAG+AGG - chr5_3:24122689-24122708 Msa0806240:intron 35.0%
ACTGAATTTCTCTGTGTGAT+AGG - chr5_3:24123066-24123085 Msa0806240:five_prime_UTR 35.0%
GAATTGTATGATCCTAGTAG+AGG - chr5_3:24123299-24123318 Msa0806240:intron 35.0%
! TTTCAGAAAGGTTAGTCAGT+AGG - chr5_3:24123490-24123509 Msa0806240:intron 35.0%
! TTCAGAAAGGTTAGTCAGTA+GGG - chr5_3:24123491-24123510 Msa0806240:intron 35.0%
CATAAGACACATCCTTCTTT+CGG + chr5_3:24123537-24123556 None:intergenic 35.0%
ACTGAAAATGATATGCCATC+TGG - chr5_3:24123597-24123616 Msa0806240:intron 35.0%
CTGAAAATGATATGCCATCT+GGG - chr5_3:24123598-24123617 Msa0806240:intron 35.0%
AACAAACTCTGTAATGCAGA+GGG + chr5_3:24123629-24123648 None:intergenic 35.0%
AAACAAACTCTGTAATGCAG+AGG + chr5_3:24123630-24123649 None:intergenic 35.0%
TGTATCCCATCCAAAAGATT+TGG + chr5_3:24123698-24123717 None:intergenic 35.0%
ACCATACAGAAGTTGTTTGA+AGG - chr5_3:24123932-24123951 Msa0806240:intron 35.0%
TAGATTCAGCTTGATGTCAA+AGG - chr5_3:24124104-24124123 Msa0806240:intron 35.0%
TTTAACTGAAGCTGAAGAAC+AGG + chr5_3:24124375-24124394 None:intergenic 35.0%
!!! GGAAGATGGGTTTTGGTTTT+GGG + chr5_3:24118109-24118128 None:intergenic 40.0%
AGGGTTTGCGAATGATGAAA+GGG + chr5_3:24118204-24118223 None:intergenic 40.0%
TAGGGTTTGCGAATGATGAA+AGG + chr5_3:24118205-24118224 None:intergenic 40.0%
ACGCGATTGATTACCTCTAA+CGG + chr5_3:24118282-24118301 None:intergenic 40.0%
GTAGCAACAGAATCTTGAAG+TGG - chr5_3:24118480-24118499 Msa0806240:intron 40.0%
ACAACAACAGCATCAGAGTT+AGG + chr5_3:24118520-24118539 None:intergenic 40.0%
! TCTGATGCTGTTGTTGTTGA+AGG - chr5_3:24118523-24118542 Msa0806240:intron 40.0%
TATGGAGGTAATGCAATGTG+TGG - chr5_3:24118576-24118595 Msa0806240:intron 40.0%
AGCAGAAAACACAAGTACAG+TGG - chr5_3:24119048-24119067 Msa0806240:five_prime_UTR 40.0%
! TCCGATGTTTTCACTATTGG+TGG - chr5_3:24119152-24119171 Msa0806240:five_prime_UTR 40.0%
GCCACCAATAGTGAAAACAT+CGG + chr5_3:24119156-24119175 None:intergenic 40.0%
GCAAATCTAGTCCAACCATA+AGG + chr5_3:24119376-24119395 None:intergenic 40.0%
!! CTGAAATTTGCTCCCTTTTG+TGG - chr5_3:24119522-24119541 Msa0806240:intron 40.0%
!! GAAATTTGCTCCCTTTTGTG+GGG - chr5_3:24119524-24119543 Msa0806240:intron 40.0%
ACATTTAGCACCCCACAAAA+GGG + chr5_3:24119537-24119556 None:intergenic 40.0%
AACATTTAGCACCCCACAAA+AGG + chr5_3:24119538-24119557 None:intergenic 40.0%
ATTATGGCCCTAGGTTATGT+TGG - chr5_3:24119673-24119692 Msa0806240:intron 40.0%
TTATGGCCCTAGGTTATGTT+GGG - chr5_3:24119674-24119693 Msa0806240:intron 40.0%
GATGGAGGATAGTCTATTTG+TGG - chr5_3:24119784-24119803 Msa0806240:intron 40.0%
TGGAGGATAGTCTATTTGTG+GGG - chr5_3:24119786-24119805 Msa0806240:intron 40.0%
TAACCCAAAGTGAATCTAGG+TGG + chr5_3:24119879-24119898 None:intergenic 40.0%
GACTAACCCAAAGTGAATCT+AGG + chr5_3:24119882-24119901 None:intergenic 40.0%
! GACCACACATTTGTTAGGTT+TGG - chr5_3:24119913-24119932 Msa0806240:intron 40.0%
AGCCAAACCTAACAAATGTG+TGG + chr5_3:24119918-24119937 None:intergenic 40.0%
GCAAGAACCAATGTTGAAGT+TGG + chr5_3:24119968-24119987 None:intergenic 40.0%
! AAATAGTGGAAGCCGCAAAA+CGG - chr5_3:24120063-24120082 Msa0806240:intron 40.0%
! TTCTCATCGGACTTTTGTCT+CGG + chr5_3:24120415-24120434 None:intergenic 40.0%
ACCCATAATGGCATGAATAG+AGG + chr5_3:24120516-24120535 None:intergenic 40.0%
TTTGTATCGTCCGTTGAAGT+TGG - chr5_3:24120593-24120612 Msa0806240:intron 40.0%
TTGTATCGTCCGTTGAAGTT+GGG - chr5_3:24120594-24120613 Msa0806240:intron 40.0%
TGAGTTATGCCCAACTTCAA+CGG + chr5_3:24120606-24120625 None:intergenic 40.0%
TGAGAAAAGCCCAATAGTGT+AGG + chr5_3:24120693-24120712 None:intergenic 40.0%
GCTTAGTGCGTGTGTATAAT+TGG - chr5_3:24120743-24120762 Msa0806240:intron 40.0%
AACCGAGATACATCTCAACA+TGG + chr5_3:24120798-24120817 None:intergenic 40.0%
!!! GCATCGCGTTTTGTCATTTT+AGG + chr5_3:24120858-24120877 None:intergenic 40.0%
!! GTACCCTTCATCCTTTTTCA+CGG - chr5_3:24121035-24121054 Msa0806240:intron 40.0%
TGACCGTGAAAAAGGATGAA+GGG + chr5_3:24121041-24121060 None:intergenic 40.0%
TTGACCGTGAAAAAGGATGA+AGG + chr5_3:24121042-24121061 None:intergenic 40.0%
TCTTCTCTTGACCGTGAAAA+AGG + chr5_3:24121049-24121068 None:intergenic 40.0%
TGTACTGTGAAAAACTGAGG+AGG - chr5_3:24121120-24121139 Msa0806240:intron 40.0%
AATGCTGAAATGCAGCACAA+CGG + chr5_3:24121242-24121261 None:intergenic 40.0%
TATGTTTGGATGGAAGGTCT+TGG - chr5_3:24121345-24121364 Msa0806240:intron 40.0%
!! GCTTTTCAGGAGAATTTTGG+AGG + chr5_3:24121555-24121574 None:intergenic 40.0%
CTTTACCACTCTCGATAATC+TGG + chr5_3:24121744-24121763 None:intergenic 40.0%
ACTATTCTTAGCAGGAATGC+AGG - chr5_3:24121969-24121988 Msa0806240:intron 40.0%
TGTGTTTGCATCAAAAGAGG+GGG + chr5_3:24122042-24122061 None:intergenic 40.0%
!! CATAGGAGGTTGAGTTTTGT+TGG - chr5_3:24122217-24122236 Msa0806240:intron 40.0%
CCGTAGAAGATGTCATGTAT+AGG - chr5_3:24122281-24122300 Msa0806240:intron 40.0%
TGACTCTTCTTAAGTAACCC+GGG + chr5_3:24122399-24122418 None:intergenic 40.0%
GTGACTCTTCTTAAGTAACC+CGG + chr5_3:24122400-24122419 None:intergenic 40.0%
GTTGGAAACCTAAGAGGTTT+AGG - chr5_3:24122695-24122714 Msa0806240:intron 40.0%
CTTCTCTTCCTAAACCTCTT+AGG + chr5_3:24122706-24122725 None:intergenic 40.0%
CTAAGAGGTTTAGGAAGAGA+AGG - chr5_3:24122704-24122723 Msa0806240:intron 40.0%
AGAAGGACATGTCTCTTCTT+TGG - chr5_3:24122721-24122740 Msa0806240:intron 40.0%
GAAGGACATGTCTCTTCTTT+GGG - chr5_3:24122722-24122741 Msa0806240:intron 40.0%
GGATCATACAATTCAGCAAG+AGG + chr5_3:24123293-24123312 None:intergenic 40.0%
GGAAGATAGATGCATACTTG+AGG - chr5_3:24123331-24123350 Msa0806240:five_prime_UTR 40.0%
TGCGCAAAGATCTTGATTAC+TGG - chr5_3:24123366-24123385 Msa0806240:five_prime_UTR 40.0%
GCGCAAAGATCTTGATTACT+GGG - chr5_3:24123367-24123386 Msa0806240:five_prime_UTR 40.0%
!! TGTGTCGGTTTGAAAAACCA+AGG - chr5_3:24123416-24123435 Msa0806240:five_prime_UTR 40.0%
TCATGTAACAAGTAGCTCCT+TGG + chr5_3:24123436-24123455 None:intergenic 40.0%
! GGCATATCATTTTCAGTCGT+GGG + chr5_3:24123594-24123613 None:intergenic 40.0%
! TGGCATATCATTTTCAGTCG+TGG + chr5_3:24123595-24123614 None:intergenic 40.0%
!! TATTGAGGCTTCCACTTTTC+AGG - chr5_3:24123892-24123911 Msa0806240:intron 40.0%
!! ATTGAGGCTTCCACTTTTCA+GGG - chr5_3:24123893-24123912 Msa0806240:intron 40.0%
GCCTTCAAACAACTTCTGTA+TGG + chr5_3:24123936-24123955 None:intergenic 40.0%
AAGTATCATGCAGAGCAGTA+TGG - chr5_3:24124191-24124210 Msa0806240:intron 40.0%
!!! GGGAAGATGGGTTTTGGTTT+TGG + chr5_3:24118110-24118129 None:intergenic 45.0%
!! AAGAAGGGGAAGATGGGTTT+TGG + chr5_3:24118116-24118135 None:intergenic 45.0%
TAAGCGAAGAAGGGGAAGAT+GGG + chr5_3:24118122-24118141 None:intergenic 45.0%
ATAAGCGAAGAAGGGGAAGA+TGG + chr5_3:24118123-24118142 None:intergenic 45.0%
TGAAGCGAGCGAAGAAACTA+GGG + chr5_3:24118223-24118242 None:intergenic 45.0%
ATGAAGCGAGCGAAGAAACT+AGG + chr5_3:24118224-24118243 None:intergenic 45.0%
CGATTGATTACCTCTAACGG+AGG + chr5_3:24118279-24118298 None:intergenic 45.0%
GATGAATGTGCGCAACGAAA+TGG - chr5_3:24118720-24118739 Msa0806240:intron 45.0%
AGTCCATGTGAATCTCCCAT+TGG + chr5_3:24119097-24119116 None:intergenic 45.0%
TGGATTAACAGCGTCAGAAG+TGG + chr5_3:24119197-24119216 None:intergenic 45.0%
CGGATACTGATCTTTCCGAA+GGG - chr5_3:24119295-24119314 Msa0806240:intron 45.0%
GGATACTGATCTTTCCGAAG+GGG - chr5_3:24119296-24119315 Msa0806240:intron 45.0%
TGTTCAGCATTGTTCCCCTT+CGG + chr5_3:24119313-24119332 None:intergenic 45.0%
TGCACAGTTCAGCTTAACTG+TGG - chr5_3:24119393-24119412 Msa0806240:intron 45.0%
CAGCTTAACTGTGGTCAATC+AGG - chr5_3:24119402-24119421 Msa0806240:intron 45.0%
GAATCTAGGTGGTCCAAACA+TGG + chr5_3:24119868-24119887 None:intergenic 45.0%
TGGACCACCTAGATTCACTT+TGG - chr5_3:24119872-24119891 Msa0806240:intron 45.0%
GGACCACCTAGATTCACTTT+GGG - chr5_3:24119873-24119892 Msa0806240:intron 45.0%
! ACTGGCATACCCTTAGCTTT+AGG + chr5_3:24120007-24120026 None:intergenic 45.0%
! TCTCATCGGACTTTTGTCTC+GGG + chr5_3:24120414-24120433 None:intergenic 45.0%
CCAAATAGCGGCAAGCATAT+CGG + chr5_3:24120543-24120562 None:intergenic 45.0%
AAACAGGCCTTTGTAAGGTG+AGG - chr5_3:24120634-24120653 Msa0806240:intron 45.0%
AGGTACTCCTCACCTTACAA+AGG + chr5_3:24120644-24120663 None:intergenic 45.0%
ATCGGAGAGTCCTACACTAT+TGG - chr5_3:24120680-24120699 Msa0806240:intron 45.0%
TCGGAGAGTCCTACACTATT+GGG - chr5_3:24120681-24120700 Msa0806240:intron 45.0%
GCACTAAGCCCAATAGTGTT+GGG + chr5_3:24120732-24120751 None:intergenic 45.0%
GCGTGTGTATAATTGGTCAG+TGG - chr5_3:24120750-24120769 Msa0806240:intron 45.0%
TTTGGAGAAAGCGAGTGAAG+CGG - chr5_3:24120896-24120915 Msa0806240:intron 45.0%
GAGGAGGAGAAGTGAATGAA+AGG - chr5_3:24121136-24121155 Msa0806240:intron 45.0%
!! GCGGTATAGCGCTGATATAT+TGG - chr5_3:24121301-24121320 Msa0806240:intron 45.0%
CACTCGGGTATATGTTTGGA+TGG - chr5_3:24121335-24121354 Msa0806240:intron 45.0%
CGGGTATATGTTTGGATGGA+AGG - chr5_3:24121339-24121358 Msa0806240:intron 45.0%
TTTGGATGGAAGGTCTTGGA+GGG - chr5_3:24121349-24121368 Msa0806240:intron 45.0%
TGTTGCCAGATTATCGAGAG+TGG - chr5_3:24121736-24121755 Msa0806240:intron 45.0%
GTTTATTCCATGGTCATGCC+CGG - chr5_3:24122378-24122397 Msa0806240:intron 45.0%
TTTATTCCATGGTCATGCCC+GGG - chr5_3:24122379-24122398 Msa0806240:intron 45.0%
GTCACAAAGATCTCTTCCTC+TGG - chr5_3:24122415-24122434 Msa0806240:intron 45.0%
! GATCTCTTCCTCTGGTTCAT+AGG - chr5_3:24122423-24122442 Msa0806240:intron 45.0%
! ACAAAATAGCCTTGCCCATC+AGG + chr5_3:24122515-24122534 None:intergenic 45.0%
!! TGGGCAAGGCTATTTTGTAG+CGG - chr5_3:24122517-24122536 Msa0806240:intron 45.0%
! CTATCCAGAGCCAACTTGTT+GGG + chr5_3:24122575-24122594 None:intergenic 45.0%
!! AGTTGGCTCTGGATAGGAAA+TGG - chr5_3:24122579-24122598 Msa0806240:intron 45.0%
!! GTTGGCTCTGGATAGGAAAT+GGG - chr5_3:24122580-24122599 Msa0806240:intron 45.0%
!! TTGGCTCTGGATAGGAAATG+GGG - chr5_3:24122581-24122600 Msa0806240:intron 45.0%
CTGATGTGACCAGTTGTTAC+AGG - chr5_3:24122616-24122635 Msa0806240:intron 45.0%
ATGTGACCAGTTGTTACAGG+AGG - chr5_3:24122619-24122638 Msa0806240:intron 45.0%
TTAATGCGCGTGAGAGTGAT+TGG - chr5_3:24123250-24123269 Msa0806240:intron 45.0%
TAATGCGCGTGAGAGTGATT+GGG - chr5_3:24123251-24123270 Msa0806240:intron 45.0%
TCCTAGTAGAGGCTATGTTG+TGG - chr5_3:24123310-24123329 Msa0806240:intron 45.0%
TCCACAACATAGCCTCTACT+AGG + chr5_3:24123314-24123333 None:intergenic 45.0%
CACAACAGTTCCCTGAAAAG+TGG + chr5_3:24123906-24123925 None:intergenic 45.0%
!! CACTTTTCAGGGAACTGTTG+TGG - chr5_3:24123904-24123923 Msa0806240:intron 45.0%
TTTCAGGGAACTGTTGTGGA+AGG - chr5_3:24123908-24123927 Msa0806240:intron 45.0%
TGTGGAAGTAGAACAGCTTG+AGG - chr5_3:24124160-24124179 Msa0806240:intron 45.0%
GTGGAAGTAGAACAGCTTGA+GGG - chr5_3:24124161-24124180 Msa0806240:intron 45.0%
TGCAGAGCAGTATGGTTTAC+AGG - chr5_3:24124199-24124218 Msa0806240:intron 45.0%
AACTGAAGCTGAAGAACAGG+TGG + chr5_3:24124372-24124391 None:intergenic 45.0%
! ATGATTTGCGCGAGACACTA+TGG - chr5_3:24124406-24124425 Msa0806240:five_prime_UTR 45.0%
! AGGAGTGGTGGTGATAGTCA+TGG + chr5_3:24118259-24118278 None:intergenic 50.0%
GATTACCTCTAACGGAGGAG+TGG + chr5_3:24118274-24118293 None:intergenic 50.0%
CACAAGTACAGTGGATGCTG+TGG - chr5_3:24119057-24119076 Msa0806240:five_prime_UTR 50.0%
GCAGTTGAAGATCCGCCAAT+GGG - chr5_3:24119079-24119098 Msa0806240:five_prime_UTR 50.0%
CCATGTGAATCTCCCATTGG+CGG + chr5_3:24119094-24119113 None:intergenic 50.0%
GCGGATACTGATCTTTCCGA+AGG - chr5_3:24119294-24119313 Msa0806240:intron 50.0%
GATGCAGGTTCGATGCCTTA+TGG - chr5_3:24119358-24119377 Msa0806240:intron 50.0%
CAGGTTCGATGCCTTATGGT+TGG - chr5_3:24119362-24119381 Msa0806240:intron 50.0%
GGCAATAGGGTCTTGCAGTT+TGG - chr5_3:24119601-24119620 Msa0806240:intron 50.0%
CCGATATGCTTGCCGCTATT+TGG - chr5_3:24120540-24120559 Msa0806240:intron 50.0%
! AATAGTGTTGGGCGCAAGGA+GGG + chr5_3:24120721-24120740 None:intergenic 50.0%
TCCTTGCGCCCAACACTATT+GGG - chr5_3:24120721-24120740 Msa0806240:intron 50.0%
CGCACTAAGCCCAATAGTGT+TGG + chr5_3:24120733-24120752 None:intergenic 50.0%
TTGTTAATAGCGGCCGCTAC+CGG - chr5_3:24120816-24120835 Msa0806240:intron 50.0%
TGGCCAAAATCGGGTCTAAG+CGG - chr5_3:24120940-24120959 Msa0806240:intron 50.0%
AAGCGTATACTCCGATCCAG+CGG + chr5_3:24121015-24121034 None:intergenic 50.0%
GTTTGGATGGAAGGTCTTGG+AGG - chr5_3:24121348-24121367 Msa0806240:intron 50.0%
TTGGATGGAAGGTCTTGGAG+GGG - chr5_3:24121350-24121369 Msa0806240:intron 50.0%
!! CAGGAGAATTTTGGAGGGGA+GGG + chr5_3:24121549-24121568 None:intergenic 50.0%
!! TCAGGAGAATTTTGGAGGGG+AGG + chr5_3:24121550-24121569 None:intergenic 50.0%
! TCTTCCTCTGGTTCATAGGC+TGG - chr5_3:24122427-24122446 Msa0806240:intron 50.0%
! TTATCACAGCCTGATGGGCA+AGG - chr5_3:24122503-24122522 Msa0806240:intron 50.0%
CCTATCCAGAGCCAACTTGT+TGG + chr5_3:24122576-24122595 None:intergenic 50.0%
!! CCAACAAGTTGGCTCTGGAT+AGG - chr5_3:24122573-24122592 Msa0806240:intron 50.0%
CCAGTTGTTACAGGAGGATC+CGG - chr5_3:24122625-24122644 Msa0806240:intron 50.0%
CAGTTGTTACAGGAGGATCC+GGG - chr5_3:24122626-24122645 Msa0806240:intron 50.0%
AATGCGCGTGAGAGTGATTG+GGG - chr5_3:24123252-24123271 Msa0806240:intron 50.0%
TACCTCTAACGGAGGAGTGG+TGG + chr5_3:24118271-24118290 None:intergenic 55.0%
GGCAGTTGAAGATCCGCCAA+TGG - chr5_3:24119078-24119097 Msa0806240:five_prime_UTR 55.0%
CCGCCAATGGGAGATTCACA+TGG - chr5_3:24119091-24119110 Msa0806240:five_prime_UTR 55.0%
! CAATAGTGTTGGGCGCAAGG+AGG + chr5_3:24120722-24120741 None:intergenic 55.0%
CTCCTTGCGCCCAACACTAT+TGG - chr5_3:24120720-24120739 Msa0806240:intron 55.0%
AAAACGCGATGCAGCGCTAC+AGG - chr5_3:24120866-24120885 Msa0806240:intron 55.0%
CGAGTGAAGCGGCCGATATT+CGG - chr5_3:24120907-24120926 Msa0806240:intron 55.0%
! TCGCCGCTTAGACCCGATTT+TGG + chr5_3:24120946-24120965 None:intergenic 55.0%
!! AATCGTACAATCGGTGCCGC+TGG - chr5_3:24120996-24121015 Msa0806240:intron 55.0%
!! TACAATCGGTGCCGCTGGAT+CGG - chr5_3:24121001-24121020 Msa0806240:intron 55.0%
AAGAGGGGGAAGACTGTGTG+AGG + chr5_3:24122028-24122047 None:intergenic 55.0%
AAGTAACCCGGGCATGACCA+TGG + chr5_3:24122388-24122407 None:intergenic 55.0%
CTGTCCAGCCTATGAACCAG+AGG + chr5_3:24122434-24122453 None:intergenic 55.0%
!! AGAGCCAACTTGTTGGGCGT+CGG + chr5_3:24122569-24122588 None:intergenic 55.0%
CCGGATCCTCCTGTAACAAC+TGG + chr5_3:24122628-24122647 None:intergenic 55.0%
ACAGGAGGATCCGGGCATTT+AGG - chr5_3:24122634-24122653 Msa0806240:intron 55.0%
CAGGAGGATCCGGGCATTTA+GGG - chr5_3:24122635-24122654 Msa0806240:intron 55.0%
GATCCGGGCATTTAGGGAGA+GGG - chr5_3:24122641-24122660 Msa0806240:intron 55.0%
ATCCGGGCATTTAGGGAGAG+GGG - chr5_3:24122642-24122661 Msa0806240:intron 55.0%
ATCCCCTCTCCCTAAATGCC+CGG + chr5_3:24122647-24122666 None:intergenic 55.0%
CACCACCACTCCTCCGTTAG+AGG - chr5_3:24118266-24118285 Msa0806240:intron 60.0%
! GCCCAATAGTGTTGGGCGCA+AGG + chr5_3:24120725-24120744 None:intergenic 60.0%
! AGCGCTACAGGTGGAGCGTT+TGG - chr5_3:24120878-24120897 Msa0806240:intron 60.0%
GTGAAGCGGCCGATATTCGG+TGG - chr5_3:24120910-24120929 Msa0806240:intron 60.0%
CACCCCGCTCCACCGAATAT+CGG + chr5_3:24120922-24120941 None:intergenic 60.0%
TGGAGCGGGGTGGCCAAAAT+CGG - chr5_3:24120930-24120949 Msa0806240:intron 60.0%
! GCGTAGCAGGCGCTATTTCG+CGG + chr5_3:24121218-24121237 None:intergenic 60.0%
GATGGAAGGTCTTGGAGGGG+AGG - chr5_3:24121353-24121372 Msa0806240:intron 60.0%
!! CTTGGAGGGGAGGCGTCATT+AGG - chr5_3:24121363-24121382 Msa0806240:intron 60.0%
! GACGCCCAACAAGTTGGCTC+TGG - chr5_3:24122568-24122587 Msa0806240:intron 60.0%
GGATCCGGGCATTTAGGGAG+AGG - chr5_3:24122640-24122659 Msa0806240:intron 60.0%
GGGCATTTAGGGAGAGGGGA+TGG - chr5_3:24122646-24122665 Msa0806240:intron 60.0%
GGGAGAGGGGATGGAGAGAA+AGG - chr5_3:24122655-24122674 Msa0806240:intron 60.0%
TGCAGAGGGATGCTCCCAGA+TGG + chr5_3:24123615-24123634 None:intergenic 60.0%
ACGCGATGCAGCGCTACAGG+TGG - chr5_3:24120869-24120888 Msa0806240:intron 65.0%
! GCGGCCGATATTCGGTGGAG+CGG - chr5_3:24120915-24120934 Msa0806240:intron 65.0%
! CGGCCGATATTCGGTGGAGC+GGG - chr5_3:24120916-24120935 Msa0806240:intron 65.0%
! GGCCGATATTCGGTGGAGCG+GGG - chr5_3:24120917-24120936 Msa0806240:intron 65.0%
! CGATATTCGGTGGAGCGGGG+TGG - chr5_3:24120920-24120939 Msa0806240:intron 65.0%
GGAGCGGGGTGGCCAAAATC+GGG - chr5_3:24120931-24120950 Msa0806240:intron 65.0%
TGGGCCGACGCCCAACAAGT+TGG - chr5_3:24122562-24122581 Msa0806240:intron 65.0%
!! GGCCGCTACCGGTGCTATCG+CGG - chr5_3:24120827-24120846 Msa0806240:intron 70.0%
!! CGCCGCGATAGCACCGGTAG+CGG + chr5_3:24120832-24120851 None:intergenic 70.0%
!! CTACCGGTGCTATCGCGGCG+CGG - chr5_3:24120832-24120851 Msa0806240:intron 70.0%
GCAGCACAACGGCGCGTAGC+AGG + chr5_3:24121231-24121250 None:intergenic 70.0%
AGGCCGCGCCGCGATAGCAC+CGG + chr5_3:24120838-24120857 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 24118079 24124434 24118079 ID=Msa0806240;Name=Msa0806240
chr5_3 mRNA 24118079 24124434 24118079 ID=Msa0806240-mRNA-1;Parent=Msa0806240;Name=Msa0806240-mRNA-1;_AED=0.09;_eAED=0.09;_QI=1045|0.75|0.88|1|0.25|0|9|0|71
chr5_3 exon 24118079 24118171 24118079 ID=Msa0806240-mRNA-1:exon:9337;Parent=Msa0806240-mRNA-1
chr5_3 exon 24118293 24118406 24118293 ID=Msa0806240-mRNA-1:exon:9336;Parent=Msa0806240-mRNA-1
chr5_3 exon 24118721 24118937 24118721 ID=Msa0806240-mRNA-1:exon:9335;Parent=Msa0806240-mRNA-1
chr5_3 exon 24119014 24119278 24119014 ID=Msa0806240-mRNA-1:exon:9334;Parent=Msa0806240-mRNA-1
chr5_3 exon 24123062 24123219 24123062 ID=Msa0806240-mRNA-1:exon:9333;Parent=Msa0806240-mRNA-1
chr5_3 exon 24123330 24123478 24123330 ID=Msa0806240-mRNA-1:exon:9332;Parent=Msa0806240-mRNA-1
chr5_3 exon 24123957 24124029 24123957 ID=Msa0806240-mRNA-1:exon:9331;Parent=Msa0806240-mRNA-1
chr5_3 exon 24124226 24124363 24124226 ID=Msa0806240-mRNA-1:exon:9330;Parent=Msa0806240-mRNA-1
chr5_3 exon 24124384 24124434 24124384 ID=Msa0806240-mRNA-1:exon:9329;Parent=Msa0806240-mRNA-1
chr5_3 five_prime_UTR 24124384 24124434 24124384 ID=Msa0806240-mRNA-1:five_prime_utr;Parent=Msa0806240-mRNA-1
chr5_3 five_prime_UTR 24124226 24124363 24124226 ID=Msa0806240-mRNA-1:five_prime_utr;Parent=Msa0806240-mRNA-1
chr5_3 five_prime_UTR 24123957 24124029 24123957 ID=Msa0806240-mRNA-1:five_prime_utr;Parent=Msa0806240-mRNA-1
chr5_3 five_prime_UTR 24123330 24123478 24123330 ID=Msa0806240-mRNA-1:five_prime_utr;Parent=Msa0806240-mRNA-1
chr5_3 five_prime_UTR 24123062 24123219 24123062 ID=Msa0806240-mRNA-1:five_prime_utr;Parent=Msa0806240-mRNA-1
chr5_3 five_prime_UTR 24119014 24119278 24119014 ID=Msa0806240-mRNA-1:five_prime_utr;Parent=Msa0806240-mRNA-1
chr5_3 five_prime_UTR 24118727 24118937 24118727 ID=Msa0806240-mRNA-1:five_prime_utr;Parent=Msa0806240-mRNA-1
chr5_3 CDS 24118721 24118726 24118721 ID=Msa0806240-mRNA-1:cds;Parent=Msa0806240-mRNA-1
chr5_3 CDS 24118293 24118406 24118293 ID=Msa0806240-mRNA-1:cds;Parent=Msa0806240-mRNA-1
chr5_3 CDS 24118079 24118171 24118079 ID=Msa0806240-mRNA-1:cds;Parent=Msa0806240-mRNA-1
Gene Sequence

>Msa0806240

ATGAAGATTCAGCTTGATGTCAAAGGCTGTACAGATGTGTATGCTTCTTTTGATAAGTATGTGGAAGTAGAACAGCTTGAGGGTGATAACAAGTATCATGCAGAGCAGTATGGTTTACAGCAAGAAAGGTGTATTGTCATTGATTTTCCACCTGTTCTTCAGCTTCAGTTAAAACGGTTTGAGTATGATTTGCGCGAGACACTATGGTTAAAG
Protein sequence

>Msa0806240

MKIQLDVKGCTDVYASFDKYVEVEQLEGDNKYHAEQYGLQQERCIVIDFPPVLQLQLKRFEYDLRETLWLK