AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1270610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1270610 MtrunA17_Chr8g0341541 99.706 340 1 0 7 346 298 637 0.0 714
Msa1270610 MtrunA17_Chr5g0399821 26.490 302 212 3 4 305 84 375 4.52e-33 127
Msa1270610 MtrunA17_Chr6g0461461 25.828 302 214 3 4 305 84 375 4.75e-32 124
Msa1270610 MtrunA17_Chr7g0253311 25.828 302 214 4 4 305 84 375 8.03e-31 120
Msa1270610 MtrunA17_Chr4g0055521 23.588 301 220 2 4 304 84 374 5.06e-30 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1270610 AT1G51720.1 79.412 340 70 0 7 346 298 637 0.0 565
Msa1270610 AT1G51720.3 79.412 340 70 0 7 346 298 637 0.0 565
Msa1270610 AT1G51720.2 81.028 253 48 0 7 259 298 550 2.47e-158 456
Msa1270610 AT1G51720.4 83.333 150 25 0 7 156 298 447 6.32e-88 273
Msa1270610 AT5G07440.2 27.483 302 209 4 4 305 84 375 1.26e-32 126
Msa1270610 AT5G07440.1 27.483 302 209 4 4 305 84 375 1.26e-32 126
Msa1270610 AT5G18170.1 26.159 302 213 3 4 305 84 375 1.18e-31 123
Msa1270610 AT3G03910.1 25.497 302 215 2 4 305 84 375 4.47e-31 122
Msa1270610 AT3G03910.2 26.642 274 191 2 4 277 84 347 3.11e-29 115
Msa1270610 AT5G07440.3 28.507 221 151 3 4 224 84 297 1.31e-21 94.0

Find 96 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAAGGCTGCAACTGATTT+TGG 0.156312 8_3:+3966593 Msa1270610:CDS
GATGATTATTGTGAAATATT+TGG 0.181283 8_3:+3967288 Msa1270610:three_prime_UTR
ATCAGATTCTAGGGGATATT+TGG 0.211286 8_3:+3964776 Msa1270610:intron
GCTTTGTCTCCTTACAAATT+AGG 0.215159 8_3:+3962472 Msa1270610:CDS
TAAAGCATTAATCAGATTCT+AGG 0.253678 8_3:+3964766 Msa1270610:intron
TACAAGGAAATATGCTTTCT+TGG 0.260904 8_3:-3967137 None:intergenic
CCAGCAATGGCTGCTGGTGC+TGG 0.263171 8_3:+3965280 Msa1270610:CDS
TCAATCTGATGCCATGAATT+TGG 0.265423 8_3:+3965065 Msa1270610:CDS
GCTCTTCCCATTTCAGTATC+AGG 0.282241 8_3:+3964560 Msa1270610:CDS
TCACAGGGCCAAGAATATTT+TGG 0.282585 8_3:+3963779 Msa1270610:CDS
ATAAAGAACTCAAAGGATTA+AGG 0.294116 8_3:+3964192 Msa1270610:CDS
AGGAGACAAAGCATTCTTTA+AGG 0.296981 8_3:-3962461 None:intergenic
CGTATTACCTGATACTGAAA+TGG 0.300882 8_3:-3964567 None:intergenic
CCAGCACCAGCAGCCATTGC+TGG 0.309675 8_3:-3965280 None:intergenic
GCCATGAATTTGGTTAATTC+AGG 0.314256 8_3:+3965075 Msa1270610:CDS
GGACTTTGAATCTAAATTAC+AGG 0.316783 8_3:+3966238 Msa1270610:CDS
GTACAATATTGTCAAGAAAA+AGG 0.321606 8_3:+3967226 Msa1270610:three_prime_UTR
GACTTATCAAAGAGCTATAA+AGG 0.368168 8_3:+3966577 Msa1270610:CDS
GGATATTTGGTTGATGAAGA+TGG 0.368744 8_3:+3964789 Msa1270610:CDS
ACCTGAATTAACCAAATTCA+TGG 0.371127 8_3:-3965076 None:intergenic
GAGCCGGACCAAAATATTCT+TGG 0.373663 8_3:-3963787 None:intergenic
AATTGAATATTGCGAAACTT+TGG 0.387211 8_3:+3967061 Msa1270610:three_prime_UTR
TTTCTGCAGGGAACTTTCAC+AGG 0.391804 8_3:+3963763 Msa1270610:intron
GTTGTTATATGTCAGGGCTT+TGG 0.392307 8_3:+3966968 Msa1270610:intron
GTTGCTCCAGCAATGGCTGC+TGG 0.397576 8_3:+3965274 Msa1270610:CDS
GATATTTGGTTGATGAAGAT+GGG 0.402651 8_3:+3964790 Msa1270610:CDS
GTACTTTCAGTTACCTTGTC+AGG 0.403064 8_3:-3962673 None:intergenic
CGACCCGAAGCTACTGGTTA+TGG 0.409092 8_3:+3963817 Msa1270610:CDS
TTGCGTTGTTTAACCTGGCC+AGG 0.420927 8_3:+3967261 Msa1270610:three_prime_UTR
AGTAGCTTCGGGTCGAAGAC+TGG 0.431595 8_3:-3963809 None:intergenic
GCAATGGCTGCTGGTGCTGG+AGG 0.432301 8_3:+3965283 Msa1270610:CDS
TTAGAGAAGCTAATTGCATA+TGG 0.436088 8_3:+3964536 Msa1270610:CDS
CCTTGCATGTAGGTTGTGGC+TGG 0.440511 8_3:+3966167 Msa1270610:intron
AGATCGCACCTTTCTGTCCA+TGG 0.441320 8_3:-3965009 None:intergenic
TATGTCAGGGCTTTGGTACA+TGG 0.442170 8_3:+3966975 Msa1270610:intron
AAAGCATTAATCAGATTCTA+GGG 0.444267 8_3:+3964767 Msa1270610:intron
CAATGGCTGCTGGTGCTGGA+GGG 0.445162 8_3:+3965284 Msa1270610:CDS
GGCGTTGGTACTCGCGAGAT+GGG 0.447541 8_3:+3962796 Msa1270610:CDS
AATGGCTGCTGGTGCTGGAG+GGG 0.447659 8_3:+3965285 Msa1270610:CDS
GTCCTTTGCGTTGTTTAACC+TGG 0.450498 8_3:+3967256 Msa1270610:three_prime_UTR
TTGAACTGCGTCAGTAGTAC+AGG 0.450654 8_3:-3965227 None:intergenic
ATGAGTGCAGTTTGATGAAC+TGG 0.455477 8_3:+3966207 Msa1270610:CDS
TCATGGCTTGAGCAATAGTT+AGG 0.456865 8_3:-3967016 None:intergenic
CAGTCCATAACCAGTAGCTT+CGG 0.462128 8_3:-3963821 None:intergenic
GGACCTTCCGTCAGAGGAGA+TGG 0.462416 8_3:+3962774 Msa1270610:intron
TCATGTCAGCTAGCATGAGC+TGG 0.469008 8_3:-3964169 None:intergenic
GGTTGTCGTATACTAATAGA+AGG 0.482254 8_3:+3965096 Msa1270610:CDS
AGATGTGTAGTGAGTGGTTC+TGG 0.486916 8_3:+3964494 Msa1270610:intron
AGTCTTCGACCCGAAGCTAC+TGG 0.500610 8_3:+3963811 Msa1270610:CDS
AAGCTCAGCATAGAAGTTTG+CGG 0.507170 8_3:+3964850 Msa1270610:CDS
GGGCGTTGGTACTCGCGAGA+TGG 0.507748 8_3:+3962795 Msa1270610:CDS
GTATTACCTGATACTGAAAT+GGG 0.508270 8_3:-3964566 None:intergenic
GCTGCACCTCCTAATTTGTA+AGG 0.515123 8_3:-3962481 None:intergenic
GCTCAAGCCATGACTGATCA+AGG 0.517213 8_3:+3967026 Msa1270610:CDS
TACAAATTAGGAGGTGCAGC+TGG 0.523027 8_3:+3962484 Msa1270610:CDS
CCGTCAGAGGAGATGGGCGT+TGG 0.525355 8_3:+3962781 Msa1270610:CDS
GGACAGTATAGACGTCTAGT+TGG 0.527995 8_3:+3962829 Msa1270610:CDS
ATAATCATCAAAGCCTGGCC+AGG 0.528403 8_3:-3967274 None:intergenic
ACATCTCACACATGAAACTC+TGG 0.532354 8_3:-3962636 None:intergenic
TGTTCTTGTTGCTCCAGCAA+TGG 0.535504 8_3:+3965267 Msa1270610:CDS
TTGTCTCCTTACAAATTAGG+AGG 0.539458 8_3:+3962475 Msa1270610:CDS
TTCGGGTCGAAGACTGGAGC+CGG 0.545915 8_3:-3963803 None:intergenic
AATTTAGATTCAAAGTCCTC+CGG 0.549512 8_3:-3966233 None:intergenic
AAGCAAAACCATGGACAGAA+AGG 0.550979 8_3:+3965001 Msa1270610:CDS
TCACAATAATCATCAAAGCC+TGG 0.553826 8_3:-3967279 None:intergenic
TACACAGCCTTGATCAGTCA+TGG 0.556808 8_3:-3967033 None:intergenic
CAGTTTGATGAACTGGTCAC+CGG 0.570708 8_3:+3966214 Msa1270610:CDS
GACATTGTGTCATCGACCCT+TGG 0.572083 8_3:-3967110 None:intergenic
CGCCCATCTCCTCTGACGGA+AGG 0.572515 8_3:-3962777 None:intergenic
GGCTTGAGCAATAGTTAGGA+AGG 0.576957 8_3:-3967012 None:intergenic
AAAGGGCAAAAGTGATAATG+AGG 0.578064 8_3:+3962525 Msa1270610:CDS
CATGTCAGCTAGCATGAGCT+GGG 0.581909 8_3:-3964168 None:intergenic
CGAAGCTACTGGTTATGGAC+TGG 0.582965 8_3:+3963822 Msa1270610:CDS
TTTATGTTACAAATTCTACA+AGG 0.584894 8_3:-3967153 None:intergenic
GACCTTCCGTCAGAGGAGAT+GGG 0.585077 8_3:+3962775 Msa1270610:CDS
ATAATATTTGGACCGAGCAT+AGG 0.586813 8_3:-3964974 None:intergenic
AGTCCATAACCAGTAGCTTC+GGG 0.601782 8_3:-3963820 None:intergenic
ATGCTAGTATTTATCACCAA+GGG 0.615766 8_3:+3967094 Msa1270610:three_prime_UTR
CAGTTACCTTGTCAGGACCA+AGG 0.617519 8_3:-3962666 None:intergenic
ATATTAGGACCTTCCGTCAG+AGG 0.628155 8_3:+3962768 Msa1270610:intron
CCAACGCCCATCTCCTCTGA+CGG 0.628777 8_3:-3962781 None:intergenic
TCATTACCTTGGTCCTGACA+AGG 0.631247 8_3:+3962660 Msa1270610:CDS
ATTATGATGAAGCAAAACCA+TGG 0.633955 8_3:+3964992 Msa1270610:CDS
TGTGAGATGTATCATTACCT+TGG 0.636503 8_3:+3962649 Msa1270610:CDS
TTCTGCAGGGAACTTTCACA+GGG 0.636517 8_3:+3963764 Msa1270610:intron
AAATTAGGAGGTGCAGCTGG+TGG 0.637075 8_3:+3962487 Msa1270610:CDS
CTGACGCAGTTCAAGTTCTG+AGG 0.637492 8_3:+3965236 Msa1270610:CDS
GGCCAGGTTAAACAACGCAA+AGG 0.650078 8_3:-3967258 None:intergenic
ACTATTCAAAGACCTATGCT+CGG 0.650401 8_3:+3964962 Msa1270610:CDS
GATGCTAGTATTTATCACCA+AGG 0.657648 8_3:+3967093 Msa1270610:three_prime_UTR
GCGTTGGTACTCGCGAGATG+GGG 0.667931 8_3:+3962797 Msa1270610:CDS
TTTGATGAACTGGTCACCGG+AGG 0.674578 8_3:+3966217 Msa1270610:CDS
GACATGAATAAAGAACTCAA+AGG 0.675264 8_3:+3964185 Msa1270610:CDS
TGAACTGCGTCAGTAGTACA+GGG 0.688964 8_3:-3965226 None:intergenic
TCCTGCAGATGTGTAGTGAG+TGG 0.690117 8_3:+3964488 Msa1270610:intron
AAGCATTAATCAGATTCTAG+GGG 0.694097 8_3:+3964768 Msa1270610:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATATTATTCTTTTATTTA+TGG + chr8_3:3962741-3962760 Msa1270610:intron 10.0%
!! AAAATTATATTGAATACAAA+AGG - chr8_3:3964305-3964324 None:intergenic 10.0%
!! ATAAATAACTAATTCATTTA+AGG + chr8_3:3965881-3965900 Msa1270610:intron 10.0%
!!! ACTAAATTAATTTGATATGA+TGG + chr8_3:3962596-3962615 Msa1270610:intron 15.0%
!! TTTATTTATGGATGTATATT+AGG + chr8_3:3962753-3962772 Msa1270610:intron 15.0%
!! TTAAATACTAACTAACTATT+TGG + chr8_3:3962877-3962896 Msa1270610:intron 15.0%
!!! AGTAATTTAGATTATTTCTT+AGG + chr8_3:3963033-3963052 Msa1270610:intron 15.0%
!! TCATTAAACATAAAGAAATA+TGG - chr8_3:3963067-3963086 None:intergenic 15.0%
!! ATAGTATTAATTAGATTAGA+TGG + chr8_3:3963380-3963399 Msa1270610:intron 15.0%
!!! TTTAACTTATAATTTTGATC+TGG + chr8_3:3963582-3963601 Msa1270610:intron 15.0%
!! ATATTGGTAAATATAACTAT+AGG + chr8_3:3964675-3964694 Msa1270610:intron 15.0%
!! TTAACAATGGTTTAATATAT+CGG - chr8_3:3965663-3965682 None:intergenic 15.0%
!! ACTAAATTTACATTTAACAA+TGG - chr8_3:3965676-3965695 None:intergenic 15.0%
!! TTGTTAAATGTAAATTTAGT+CGG + chr8_3:3965676-3965695 Msa1270610:intron 15.0%
!!! TTTATATTTTGAAATGACAA+GGG - chr8_3:3966078-3966097 None:intergenic 15.0%
!!! TTTTATATTTTGAAATGACA+AGG - chr8_3:3966079-3966098 None:intergenic 15.0%
!!! TATTTTGAAAGGAAAAAAAA+AGG + chr8_3:3966468-3966487 Msa1270610:intron 15.0%
!!! ATTTTGAAAGGAAAAAAAAA+GGG + chr8_3:3966469-3966488 Msa1270610:intron 15.0%
!! ATAAAAACTGATTATGAAAA+GGG + chr8_3:3967171-3967190 Msa1270610:three_prime_UTR 15.0%
!! AAAAGAATAATATGTCAAAC+AGG - chr8_3:3962736-3962755 None:intergenic 20.0%
!! GAAAATATCTCATTATGTTA+AGG + chr8_3:3962999-3963018 Msa1270610:intron 20.0%
!!! TTTAGATTATTTCTTAGGTT+CGG + chr8_3:3963038-3963057 Msa1270610:intron 20.0%
!! AAATATGACACTCATAAATA+TGG + chr8_3:3963478-3963497 Msa1270610:intron 20.0%
!! AATATGACACTCATAAATAT+GGG + chr8_3:3963479-3963498 Msa1270610:intron 20.0%
!!! AAAGAAAAACTTTTATTGTC+AGG + chr8_3:3963718-3963737 Msa1270610:intron 20.0%
!! AAATTTAATCTTGACATTCT+TGG - chr8_3:3964115-3964134 None:intergenic 20.0%
!! CAACAATCTTCTTTATATAA+TGG - chr8_3:3964238-3964257 None:intergenic 20.0%
!! TCATTAATAATGACAAACAA+GGG - chr8_3:3964280-3964299 None:intergenic 20.0%
!! ATCATTAATAATGACAAACA+AGG - chr8_3:3964281-3964300 None:intergenic 20.0%
!! AAAAGGAAATTATGGAAAAT+GGG - chr8_3:3964370-3964389 None:intergenic 20.0%
!! TATGAAATAAATTTAGGAGA+CGG - chr8_3:3964441-3964460 None:intergenic 20.0%
!! TCCTAAATTTATTTCATACT+TGG + chr8_3:3964443-3964462 Msa1270610:intron 20.0%
!! TCCAAGTATGAAATAAATTT+AGG - chr8_3:3964447-3964466 None:intergenic 20.0%
!! TTTCTTTGATGAATATATTG+AGG + chr8_3:3964592-3964611 Msa1270610:intron 20.0%
!! TTAATCATCACTAAGAATAT+TGG + chr8_3:3964659-3964678 Msa1270610:intron 20.0%
!!! TTTTGCTTCATCATAATATT+TGG - chr8_3:3964989-3965008 None:intergenic 20.0%
!! CTTCTTATAATTTGAATCTT+AGG + chr8_3:3965193-3965212 Msa1270610:intron 20.0%
!! TAAATAAAAACTCTCAATCA+TGG - chr8_3:3965432-3965451 None:intergenic 20.0%
!!! CTCCTTTTAAGAATTATAAA+TGG + chr8_3:3966354-3966373 Msa1270610:intron 20.0%
!! GACCATTTATAATTCTTAAA+AGG - chr8_3:3966359-3966378 None:intergenic 20.0%
!!! TTCTGTTGCTTTTTTTATTT+TGG + chr8_3:3966537-3966556 Msa1270610:intron 20.0%
!!! AAATTGTTAAGAGTTTTCAT+AGG - chr8_3:3966670-3966689 None:intergenic 20.0%
!!! ATTTTACTTTTATACAAGGA+TGG - chr8_3:3966781-3966800 None:intergenic 20.0%
!! TTTATGTTACAAATTCTACA+AGG - chr8_3:3967156-3967175 None:intergenic 20.0%
!! CATAAAAACTGATTATGAAA+AGG + chr8_3:3967170-3967189 Msa1270610:three_prime_UTR 20.0%
!! TAAAAACTGATTATGAAAAG+GGG + chr8_3:3967172-3967191 Msa1270610:three_prime_UTR 20.0%
!! GATGATTATTGTGAAATATT+TGG + chr8_3:3967288-3967307 Msa1270610:three_prime_UTR 20.0%
! AATACTAACTAACTATTTGG+TGG + chr8_3:3962880-3962899 Msa1270610:intron 25.0%
!! TATTTTTCTCCCTTTTTTTC+TGG + chr8_3:3962905-3962924 Msa1270610:intron 25.0%
!! ATTTTTCTCCCTTTTTTTCT+GGG + chr8_3:3962906-3962925 Msa1270610:intron 25.0%
! TATTAATGTCAACTACTGAT+GGG - chr8_3:3963096-3963115 None:intergenic 25.0%
! ATATTAATGTCAACTACTGA+TGG - chr8_3:3963097-3963116 None:intergenic 25.0%
! TAGTTGACATTAATATGAGT+TGG + chr8_3:3963101-3963120 Msa1270610:intron 25.0%
! TAGGAGAAACTATAAATGAA+AGG + chr8_3:3963272-3963291 Msa1270610:intron 25.0%
! TCACCATTATCATAAATACA+AGG + chr8_3:3963342-3963361 Msa1270610:intron 25.0%
! ATATGACACTCATAAATATG+GGG + chr8_3:3963480-3963499 Msa1270610:intron 25.0%
! TCAAATGTAAAATGTAACCA+AGG - chr8_3:3963522-3963541 None:intergenic 25.0%
! ATAAAGGAAAAGATAGCATA+GGG - chr8_3:3963629-3963648 None:intergenic 25.0%
! ACAATAACTCAAGTACATAA+AGG - chr8_3:3963645-3963664 None:intergenic 25.0%
!!! TTTTTTCTTGGAACGTTTTA+AGG + chr8_3:3963999-3964018 Msa1270610:intron 25.0%
! ATAAAGAACTCAAAGGATTA+AGG + chr8_3:3964192-3964211 Msa1270610:CDS 25.0%
! TTCTAAGTTTCTAATCTTGA+TGG - chr8_3:3964344-3964363 None:intergenic 25.0%
! GAAAAGGAAATTATGGAAAA+TGG - chr8_3:3964371-3964390 None:intergenic 25.0%
! ACATTCAGAAAAGGAAATTA+TGG - chr8_3:3964378-3964397 None:intergenic 25.0%
!! GAATCTAAAACATTCAGAAA+AGG - chr8_3:3964387-3964406 None:intergenic 25.0%
!! TAAAGCATTAATCAGATTCT+AGG + chr8_3:3964766-3964785 Msa1270610:intron 25.0%
!! AAAGCATTAATCAGATTCTA+GGG + chr8_3:3964767-3964786 Msa1270610:intron 25.0%
! ATCATCATATCATACATAAC+TGG - chr8_3:3964914-3964933 None:intergenic 25.0%
!!! TAATGTTGTTTTGCTTAACA+CGG - chr8_3:3965360-3965379 None:intergenic 25.0%
! TTCACAAAGATAGAAACATA+CGG - chr8_3:3965740-3965759 None:intergenic 25.0%
! TTTCTATCTTTGTGAAATTG+TGG + chr8_3:3965744-3965763 Msa1270610:intron 25.0%
!!! AGTTAATATTTTTTTGCGCA+AGG - chr8_3:3965860-3965879 None:intergenic 25.0%
! AAGAATTATAAATGGTCGAT+AGG + chr8_3:3966362-3966381 Msa1270610:intron 25.0%
!!! TTCCATGTTAGTATTTTGAA+AGG + chr8_3:3966457-3966476 Msa1270610:intron 25.0%
! TTCCTTTCAAAATACTAACA+TGG - chr8_3:3966462-3966481 None:intergenic 25.0%
! ACATGACATAACATTGTTTA+TGG - chr8_3:3966508-3966527 None:intergenic 25.0%
! TACTGAAAAAAGAACTTACT+CGG - chr8_3:3966636-3966655 None:intergenic 25.0%
! GTTACTAGATATATAAACCT+GGG - chr8_3:3966716-3966735 None:intergenic 25.0%
! TGTTACTAGATATATAAACC+TGG - chr8_3:3966717-3966736 None:intergenic 25.0%
! GGTTTATATATCTAGTAACA+TGG + chr8_3:3966717-3966736 Msa1270610:intron 25.0%
!!! ACGCATTTTACTTTTATACA+AGG - chr8_3:3966785-3966804 None:intergenic 25.0%
! AAATAAAATATCCATTGCAG+GGG - chr8_3:3966910-3966929 None:intergenic 25.0%
! GAAATAAAATATCCATTGCA+GGG - chr8_3:3966911-3966930 None:intergenic 25.0%
! AATTGAATATTGCGAAACTT+TGG + chr8_3:3967061-3967080 Msa1270610:three_prime_UTR 25.0%
! AAAAACTGATTATGAAAAGG+GGG + chr8_3:3967173-3967192 Msa1270610:three_prime_UTR 25.0%
! GTACAATATTGTCAAGAAAA+AGG + chr8_3:3967226-3967245 Msa1270610:three_prime_UTR 25.0%
GTGAATAGGTAAAACGATAA+AGG - chr8_3:3962705-3962724 None:intergenic 30.0%
! TTTTTCTCCCTTTTTTTCTG+GGG + chr8_3:3962907-3962926 Msa1270610:intron 30.0%
AGTAATATTCATCGAAGTAC+AGG - chr8_3:3962940-3962959 None:intergenic 30.0%
ATTAATGTCAACTACTGATG+GGG - chr8_3:3963095-3963114 None:intergenic 30.0%
AGGTTATGTCACACAAATTT+AGG + chr8_3:3963253-3963272 Msa1270610:intron 30.0%
CCACCTTGTATTTATGATAA+TGG - chr8_3:3963348-3963367 None:intergenic 30.0%
CCATTATCATAAATACAAGG+TGG + chr8_3:3963345-3963364 Msa1270610:intron 30.0%
! ACCGAAAAATATACTCGTTT+TGG + chr8_3:3963439-3963458 Msa1270610:intron 30.0%
! CCCAAAACGAGTATATTTTT+CGG - chr8_3:3963443-3963462 None:intergenic 30.0%
! CCGAAAAATATACTCGTTTT+GGG + chr8_3:3963440-3963459 Msa1270610:intron 30.0%
CATAAAGGAAAAGATAGCAT+AGG - chr8_3:3963630-3963649 None:intergenic 30.0%
AATGCATAGTGCGTATAATA+TGG - chr8_3:3963690-3963709 None:intergenic 30.0%
CCAAGAAAAAAGAGAGAAAA+TGG - chr8_3:3963990-3964009 None:intergenic 30.0%
! CCATTTTCTCTCTTTTTTCT+TGG + chr8_3:3963987-3964006 Msa1270610:intron 30.0%
AAGCTAGCATATAAAAATGC+AGG - chr8_3:3964048-3964067 None:intergenic 30.0%
GACATGAATAAAGAACTCAA+AGG + chr8_3:3964185-3964204 Msa1270610:CDS 30.0%
TAATAATGACAAACAAGGGT+CGG - chr8_3:3964276-3964295 None:intergenic 30.0%
CAAATTTCACACTAGATAAC+TGG - chr8_3:3964418-3964437 None:intergenic 30.0%
TTAGAGAAGCTAATTGCATA+TGG + chr8_3:3964536-3964555 Msa1270610:CDS 30.0%
GTATTACCTGATACTGAAAT+GGG - chr8_3:3964569-3964588 None:intergenic 30.0%
AAGCATTAATCAGATTCTAG+GGG + chr8_3:3964768-3964787 Msa1270610:intron 30.0%
!! GATATTTGGTTGATGAAGAT+GGG + chr8_3:3964790-3964809 Msa1270610:CDS 30.0%
GATGATCCTTGTTCATAAAT+TGG + chr8_3:3964928-3964947 Msa1270610:intron 30.0%
ATTATGATGAAGCAAAACCA+TGG + chr8_3:3964992-3965011 Msa1270610:CDS 30.0%
ACCTGAATTAACCAAATTCA+TGG - chr8_3:3965079-3965098 None:intergenic 30.0%
!!! AATGTTGTTTTGCTTAACAC+GGG - chr8_3:3965359-3965378 None:intergenic 30.0%
TTAACGACCACTAATGTTAA+CGG - chr8_3:3965388-3965407 None:intergenic 30.0%
AATGTTATGTCTGATGTTTG+AGG - chr8_3:3965613-3965632 None:intergenic 30.0%
!! TAATACCATTTTTGACCTGA+GGG + chr8_3:3965964-3965983 Msa1270610:intron 30.0%
AATTTAGATTCAAAGTCCTC+CGG - chr8_3:3966236-3966255 None:intergenic 30.0%
GGACTTTGAATCTAAATTAC+AGG + chr8_3:3966238-3966257 Msa1270610:CDS 30.0%
TACAGGTATTTATAATGAGC+TGG + chr8_3:3966255-3966274 Msa1270610:intron 30.0%
!!! GTTGCTTTTTTTATTTTGGC+AGG + chr8_3:3966541-3966560 Msa1270610:intron 30.0%
GACTTATCAAAGAGCTATAA+AGG + chr8_3:3966577-3966596 Msa1270610:CDS 30.0%
ACTGAAAAAAGAACTTACTC+GGG - chr8_3:3966635-3966654 None:intergenic 30.0%
! GTAAAATGCGTTTTACTAAG+TGG + chr8_3:3966794-3966813 Msa1270610:intron 30.0%
TGTTAAGACTTCAACATAGT+TGG - chr8_3:3966880-3966899 None:intergenic 30.0%
CGAAATAAAATATCCATTGC+AGG - chr8_3:3966912-3966931 None:intergenic 30.0%
AACCAAACAAATATTAACCC+GGG - chr8_3:3966948-3966967 None:intergenic 30.0%
CAACCAAACAAATATTAACC+CGG - chr8_3:3966949-3966968 None:intergenic 30.0%
! TTTGGTTGTTGTTATATGTC+AGG + chr8_3:3966961-3966980 Msa1270610:intron 30.0%
! TTGGTTGTTGTTATATGTCA+GGG + chr8_3:3966962-3966981 Msa1270610:intron 30.0%
ATGCTAGTATTTATCACCAA+GGG + chr8_3:3967094-3967113 Msa1270610:three_prime_UTR 30.0%
TACAAGGAAATATGCTTTCT+TGG - chr8_3:3967140-3967159 None:intergenic 30.0%
! AGGAGACAAAGCATTCTTTA+AGG - chr8_3:3962464-3962483 None:intergenic 35.0%
GCTTTGTCTCCTTACAAATT+AGG + chr8_3:3962472-3962491 Msa1270610:CDS 35.0%
TTGTCTCCTTACAAATTAGG+AGG + chr8_3:3962475-3962494 Msa1270610:CDS 35.0%
!! TGGAAGTGATTTTGATCCAA+AGG + chr8_3:3962507-3962526 Msa1270610:CDS 35.0%
!! GGAAGTGATTTTGATCCAAA+GGG + chr8_3:3962508-3962527 Msa1270610:CDS 35.0%
!! TCATTATCACTTTTGCCCTT+TGG - chr8_3:3962526-3962545 None:intergenic 35.0%
! AAAGGGCAAAAGTGATAATG+AGG + chr8_3:3962525-3962544 Msa1270610:CDS 35.0%
TGTGAGATGTATCATTACCT+TGG + chr8_3:3962649-3962668 Msa1270610:CDS 35.0%
AGGAAAACCCCAGAAAAAAA+GGG - chr8_3:3962917-3962936 None:intergenic 35.0%
AATATTCATCGAAGTACAGG+AGG - chr8_3:3962937-3962956 None:intergenic 35.0%
AGAGACTTTGAATCGTGATT+AGG - chr8_3:3963150-3963169 None:intergenic 35.0%
AATATGTCACTCATACTGGA+CGG - chr8_3:3963233-3963252 None:intergenic 35.0%
TCCAGTATGAGTGACATATT+AGG + chr8_3:3963233-3963252 Msa1270610:intron 35.0%
ACCTAATATGTCACTCATAC+TGG - chr8_3:3963237-3963256 None:intergenic 35.0%
GAATACACGAATGCACAATA+AGG - chr8_3:3963324-3963343 None:intergenic 35.0%
ACTCATAAATATGGGGATTG+AGG + chr8_3:3963487-3963506 Msa1270610:intron 35.0%
CTCATAAATATGGGGATTGA+GGG + chr8_3:3963488-3963507 Msa1270610:intron 35.0%
!! TATGCTTACCTTATTTCTGC+AGG + chr8_3:3963750-3963769 Msa1270610:intron 35.0%
!! ATGCTTACCTTATTTCTGCA+GGG + chr8_3:3963751-3963770 Msa1270610:intron 35.0%
AAGAGAGAAAATGGAAGTCA+TGG - chr8_3:3963981-3964000 None:intergenic 35.0%
CTTGACATTCTTGGTTGAAA+TGG - chr8_3:3964106-3964125 None:intergenic 35.0%
CGTATTACCTGATACTGAAA+TGG - chr8_3:3964570-3964589 None:intergenic 35.0%
TGCACTTCATTATTGCATGT+CGG + chr8_3:3964619-3964638 Msa1270610:intron 35.0%
! ATCAGATTCTAGGGGATATT+TGG + chr8_3:3964776-3964795 Msa1270610:intron 35.0%
!! GGATATTTGGTTGATGAAGA+TGG + chr8_3:3964789-3964808 Msa1270610:CDS 35.0%
CATACGCCAATTTATGAACA+AGG - chr8_3:3964937-3964956 None:intergenic 35.0%
ACTATTCAAAGACCTATGCT+CGG + chr8_3:3964962-3964981 Msa1270610:CDS 35.0%
ATAATATTTGGACCGAGCAT+AGG - chr8_3:3964977-3964996 None:intergenic 35.0%
TCAATCTGATGCCATGAATT+TGG + chr8_3:3965065-3965084 Msa1270610:CDS 35.0%
GCCATGAATTTGGTTAATTC+AGG + chr8_3:3965075-3965094 Msa1270610:CDS 35.0%
GGTTGTCGTATACTAATAGA+AGG + chr8_3:3965096-3965115 Msa1270610:CDS 35.0%
AATATGCATGCAATTTGCAC+AGG - chr8_3:3965336-3965355 None:intergenic 35.0%
TAGTTGACCGTTAACATTAG+TGG + chr8_3:3965378-3965397 Msa1270610:intron 35.0%
TCAAACAAGAGCCTGAATTA+GGG - chr8_3:3965556-3965575 None:intergenic 35.0%
AGAAACATACGGTTGTATCA+AGG - chr8_3:3965729-3965748 None:intergenic 35.0%
CGGATATACACAAACATACT+TGG - chr8_3:3965810-3965829 None:intergenic 35.0%
!! CTAATACCATTTTTGACCTG+AGG + chr8_3:3965963-3965982 Msa1270610:intron 35.0%
TTGTGTTTGCACTGAAAAAC+AGG + chr8_3:3966016-3966035 Msa1270610:intron 35.0%
TTCAGTCATACACACATCAA+TGG - chr8_3:3966042-3966061 None:intergenic 35.0%
ATTTATAATGAGCTGGTCAC+CGG + chr8_3:3966262-3966281 Msa1270610:intron 35.0%
TAGTTCATAAAACTGCACTC+CGG - chr8_3:3966284-3966303 None:intergenic 35.0%
TATAAATGGTCGATAGGTTG+CGG + chr8_3:3966368-3966387 Msa1270610:intron 35.0%
!! ATAAAGGCTGCAACTGATTT+TGG + chr8_3:3966593-3966612 Msa1270610:CDS 35.0%
CTGAAAAAAGAACTTACTCG+GGG - chr8_3:3966634-3966653 None:intergenic 35.0%
AACCCGGGTTAATATTTGTT+TGG + chr8_3:3966943-3966962 Msa1270610:intron 35.0%
GATGCTAGTATTTATCACCA+AGG + chr8_3:3967093-3967112 Msa1270610:three_prime_UTR 35.0%
AGGGGGAAATCAAAATTTAG+AGG + chr8_3:3967190-3967209 Msa1270610:three_prime_UTR 35.0%
TCACAATAATCATCAAAGCC+TGG - chr8_3:3967282-3967301 None:intergenic 35.0%
ACATCTCACACATGAAACTC+TGG - chr8_3:3962639-3962658 None:intergenic 40.0%
GTACTTTCAGTTACCTTGTC+AGG - chr8_3:3962676-3962695 None:intergenic 40.0%
!! ACGTCTAGTTGGTCATTTTC+AGG + chr8_3:3962840-3962859 Msa1270610:CDS 40.0%
GAGGAAAACCCCAGAAAAAA+AGG - chr8_3:3962918-3962937 None:intergenic 40.0%
GGAGTAAATCTTCGGCTATT+GGG - chr8_3:3963208-3963227 None:intergenic 40.0%
! GATTGAGGGAGTATATACCT+TGG + chr8_3:3963502-3963521 Msa1270610:intron 40.0%
GAAAGTTCCCTGCAGAAATA+AGG - chr8_3:3963761-3963780 None:intergenic 40.0%
! TCACAGGGCCAAGAATATTT+TGG + chr8_3:3963779-3963798 Msa1270610:CDS 40.0%
!! TTTCACGTCTCATTTTGGCA+AGG - chr8_3:3963869-3963888 None:intergenic 40.0%
! CTCAGTTTCACGTCTCATTT+TGG - chr8_3:3963874-3963893 None:intergenic 40.0%
!!! TTCTTGGAACGTTTTAAGGC+AGG + chr8_3:3964003-3964022 Msa1270610:intron 40.0%
CATATAAAAATGCAGGCACG+AGG - chr8_3:3964041-3964060 None:intergenic 40.0%
! ACAAGTTTTTGTGCATCTGC+AGG + chr8_3:3964136-3964155 Msa1270610:intron 40.0%
GAACAGATCAGGGTACATAT+AGG - chr8_3:3964723-3964742 None:intergenic 40.0%
CACATTCTGTGAACAGATCA+GGG - chr8_3:3964733-3964752 None:intergenic 40.0%
AAGCTCAGCATAGAAGTTTG+CGG + chr8_3:3964850-3964869 Msa1270610:CDS 40.0%
AAGCAAAACCATGGACAGAA+AGG + chr8_3:3965001-3965020 Msa1270610:CDS 40.0%
! CGTTGTTGTTGTGTTCCATT+TGG + chr8_3:3965490-3965509 Msa1270610:intron 40.0%
TTGTTGTGTTCCATTTGGCA+TGG + chr8_3:3965495-3965514 Msa1270610:intron 40.0%
CACTACATATCCATGCCAAA+TGG - chr8_3:3965508-3965527 None:intergenic 40.0%
GGCATGGATATGTAGTGAAA+CGG + chr8_3:3965511-3965530 Msa1270610:intron 40.0%
GCATGGATATGTAGTGAAAC+GGG + chr8_3:3965512-3965531 Msa1270610:intron 40.0%
GATATGTAGTGAAACGGGAA+GGG + chr8_3:3965517-3965536 Msa1270610:intron 40.0%
CTCAAACAAGAGCCTGAATT+AGG - chr8_3:3965557-3965576 None:intergenic 40.0%
! CTAATTCAGGCTCTTGTTTG+AGG + chr8_3:3965555-3965574 Msa1270610:intron 40.0%
TACACAAACATACTTGGCAG+AGG - chr8_3:3965804-3965823 None:intergenic 40.0%
ATACGCACACAGGTCAATAA+AGG - chr8_3:3965930-3965949 None:intergenic 40.0%
AACAAGTACAATACGCACAC+AGG - chr8_3:3965940-3965959 None:intergenic 40.0%
TGATGTGTGTATGACTGAAG+AGG + chr8_3:3966043-3966062 Msa1270610:intron 40.0%
ATCTTGTTCTCCTTGCATGT+AGG + chr8_3:3966157-3966176 Msa1270610:intron 40.0%
ATGAGTGCAGTTTGATGAAC+TGG + chr8_3:3966207-3966226 Msa1270610:CDS 40.0%
ACTAAGTGGTTGAGTCTAAG+TGG + chr8_3:3966808-3966827 Msa1270610:intron 40.0%
! AACATTTTGTTCCCCTGCAA+TGG + chr8_3:3966896-3966915 Msa1270610:intron 40.0%
GTTGTTATATGTCAGGGCTT+TGG + chr8_3:3966968-3966987 Msa1270610:intron 40.0%
TCATGGCTTGAGCAATAGTT+AGG - chr8_3:3967019-3967038 None:intergenic 40.0%
! GCTGCACCTCCTAATTTGTA+AGG - chr8_3:3962484-3962503 None:intergenic 45.0%
! TACAAATTAGGAGGTGCAGC+TGG + chr8_3:3962484-3962503 Msa1270610:CDS 45.0%
TCATTACCTTGGTCCTGACA+AGG + chr8_3:3962660-3962679 Msa1270610:CDS 45.0%
AACAGGCGTTCAACGTGAAT+AGG - chr8_3:3962719-3962738 None:intergenic 45.0%
ATATTAGGACCTTCCGTCAG+AGG + chr8_3:3962768-3962787 Msa1270610:intron 45.0%
GGACAGTATAGACGTCTAGT+TGG + chr8_3:3962829-3962848 Msa1270610:CDS 45.0%
GGGAGTAAATCTTCGGCTAT+TGG - chr8_3:3963209-3963228 None:intergenic 45.0%
TTTCTGCAGGGAACTTTCAC+AGG + chr8_3:3963763-3963782 Msa1270610:intron 45.0%
TTCTGCAGGGAACTTTCACA+GGG + chr8_3:3963764-3963783 Msa1270610:intron 45.0%
!!! GGGCCAAGAATATTTTGGTC+CGG + chr8_3:3963784-3963803 Msa1270610:CDS 45.0%
GAGCCGGACCAAAATATTCT+TGG - chr8_3:3963790-3963809 None:intergenic 45.0%
AGTCCATAACCAGTAGCTTC+GGG - chr8_3:3963823-3963842 None:intergenic 45.0%
CAGTCCATAACCAGTAGCTT+CGG - chr8_3:3963824-3963843 None:intergenic 45.0%
AGATGTGTAGTGAGTGGTTC+TGG + chr8_3:3964494-3964513 Msa1270610:intron 45.0%
GCTCTTCCCATTTCAGTATC+AGG + chr8_3:3964560-3964579 Msa1270610:CDS 45.0%
CAGATCAGGGTACATATAGG+AGG - chr8_3:3964720-3964739 None:intergenic 45.0%
GCACATTCTGTGAACAGATC+AGG - chr8_3:3964734-3964753 None:intergenic 45.0%
TGAACTGCGTCAGTAGTACA+GGG - chr8_3:3965229-3965248 None:intergenic 45.0%
TTGAACTGCGTCAGTAGTAC+AGG - chr8_3:3965230-3965249 None:intergenic 45.0%
TGTTCTTGTTGCTCCAGCAA+TGG + chr8_3:3965267-3965286 Msa1270610:CDS 45.0%
GGATATGTAGTGAAACGGGA+AGG + chr8_3:3965516-3965535 Msa1270610:intron 45.0%
ACCAAGTGGTTCCCTAATTC+AGG + chr8_3:3965542-3965561 Msa1270610:intron 45.0%
CTTTGTGAAATTGTGGCCGA+TGG + chr8_3:3965751-3965770 Msa1270610:intron 45.0%
TCATCATTGCAGGAGGAAGA+AGG - chr8_3:3965834-3965853 None:intergenic 45.0%
CGAAACCCTCAGGTCAAAAA+TGG - chr8_3:3965972-3965991 None:intergenic 45.0%
TTCTCCTTGCATGTAGGTTG+TGG + chr8_3:3966163-3966182 Msa1270610:intron 45.0%
CAGTTTGATGAACTGGTCAC+CGG + chr8_3:3966214-3966233 Msa1270610:CDS 45.0%
CTTTACTCTCTATAGTGCCC+AGG + chr8_3:3966696-3966715 Msa1270610:intron 45.0%
TTTCGTCCAAACATGCAACC+CGG + chr8_3:3966927-3966946 Msa1270610:intron 45.0%
ATTAACCCGGGTTGCATGTT+TGG - chr8_3:3966936-3966955 None:intergenic 45.0%
! TATGTCAGGGCTTTGGTACA+TGG + chr8_3:3966975-3966994 Msa1270610:intron 45.0%
GGCTTGAGCAATAGTTAGGA+AGG - chr8_3:3967015-3967034 None:intergenic 45.0%
TACACAGCCTTGATCAGTCA+TGG - chr8_3:3967036-3967055 None:intergenic 45.0%
GTCCTTTGCGTTGTTTAACC+TGG + chr8_3:3967256-3967275 Msa1270610:three_prime_UTR 45.0%
ATAATCATCAAAGCCTGGCC+AGG - chr8_3:3967277-3967296 None:intergenic 45.0%
! AAATTAGGAGGTGCAGCTGG+TGG + chr8_3:3962487-3962506 Msa1270610:CDS 50.0%
CAGTTACCTTGTCAGGACCA+AGG - chr8_3:3962669-3962688 None:intergenic 50.0%
!! CGCGAGATGGGGTATCTTTT+TGG + chr8_3:3962808-3962827 Msa1270610:CDS 50.0%
GGACGGAGGGAGTAAATCTT+CGG - chr8_3:3963216-3963235 None:intergenic 50.0%
TGTCACTCATACTGGACGGA+GGG - chr8_3:3963229-3963248 None:intergenic 50.0%
ATGTCACTCATACTGGACGG+AGG - chr8_3:3963230-3963249 None:intergenic 50.0%
! CGAAGCTACTGGTTATGGAC+TGG + chr8_3:3963822-3963841 Msa1270610:CDS 50.0%
GCAGGCACGAGGAAACTTAA+AGG - chr8_3:3964030-3964049 None:intergenic 50.0%
CATGTCAGCTAGCATGAGCT+GGG - chr8_3:3964171-3964190 None:intergenic 50.0%
TCATGTCAGCTAGCATGAGC+TGG - chr8_3:3964172-3964191 None:intergenic 50.0%
TCCTGCAGATGTGTAGTGAG+TGG + chr8_3:3964488-3964507 Msa1270610:intron 50.0%
ACCACTCACTACACATCTGC+AGG - chr8_3:3964492-3964511 None:intergenic 50.0%
AGATCGCACCTTTCTGTCCA+TGG - chr8_3:3965012-3965031 None:intergenic 50.0%
! CTGACGCAGTTCAAGTTCTG+AGG + chr8_3:3965236-3965255 Msa1270610:CDS 50.0%
GCCTGAATTAGGGAACCACT+TGG - chr8_3:3965546-3965565 None:intergenic 50.0%
GAAATTGTGGCCGATGGTCA+AGG + chr8_3:3965757-3965776 Msa1270610:intron 50.0%
ACCGAATCCTCCTTGACCAT+CGG - chr8_3:3965770-3965789 None:intergenic 50.0%
! GGTCAAGGAGGATTCGGTAA+TGG + chr8_3:3965772-3965791 Msa1270610:intron 50.0%
CATTGCAGGAGGAAGAAGGT+CGG - chr8_3:3965830-3965849 None:intergenic 50.0%
AAGGCTCTCATCATTGCAGG+AGG - chr8_3:3965841-3965860 None:intergenic 50.0%
CATCATCAAGCGAAACCCTC+AGG - chr8_3:3965982-3966001 None:intergenic 50.0%
CTGAGGGTTTCGCTTGATGA+TGG + chr8_3:3965980-3965999 Msa1270610:intron 50.0%
TTTGATGAACTGGTCACCGG+AGG + chr8_3:3966217-3966236 Msa1270610:CDS 50.0%
TTCGTCCAAACATGCAACCC+GGG + chr8_3:3966928-3966947 Msa1270610:intron 50.0%
GCTCAAGCCATGACTGATCA+AGG + chr8_3:3967026-3967045 Msa1270610:CDS 50.0%
GACATTGTGTCATCGACCCT+TGG - chr8_3:3967113-3967132 None:intergenic 50.0%
GGCCAGGTTAAACAACGCAA+AGG - chr8_3:3967261-3967280 None:intergenic 50.0%
TTGCGTTGTTTAACCTGGCC+AGG + chr8_3:3967261-3967280 Msa1270610:three_prime_UTR 50.0%
GACCTTCCGTCAGAGGAGAT+GGG + chr8_3:3962775-3962794 Msa1270610:CDS 55.0%
AGTAGCTTCGGGTCGAAGAC+TGG - chr8_3:3963812-3963831 None:intergenic 55.0%
AGTCTTCGACCCGAAGCTAC+TGG + chr8_3:3963811-3963830 Msa1270610:CDS 55.0%
! CGACCCGAAGCTACTGGTTA+TGG + chr8_3:3963817-3963836 Msa1270610:CDS 55.0%
AAACGGGAAGGGAGACCAAG+TGG + chr8_3:3965528-3965547 Msa1270610:intron 55.0%
ATTGTGGCCGATGGTCAAGG+AGG + chr8_3:3965760-3965779 Msa1270610:intron 55.0%
GCCGATGGTCAAGGAGGATT+CGG + chr8_3:3965766-3965785 Msa1270610:intron 55.0%
CGCAAGGCTCTCATCATTGC+AGG - chr8_3:3965844-3965863 None:intergenic 55.0%
CCAGCCACAACCTACATGCA+AGG - chr8_3:3966170-3966189 None:intergenic 55.0%
CCTTGCATGTAGGTTGTGGC+TGG + chr8_3:3966167-3966186 Msa1270610:intron 55.0%
GGACCTTCCGTCAGAGGAGA+TGG + chr8_3:3962774-3962793 Msa1270610:intron 60.0%
CCAACGCCCATCTCCTCTGA+CGG - chr8_3:3962784-3962803 None:intergenic 60.0%
!! GGCGTTGGTACTCGCGAGAT+GGG + chr8_3:3962796-3962815 Msa1270610:CDS 60.0%
! GCGTTGGTACTCGCGAGATG+GGG + chr8_3:3962797-3962816 Msa1270610:CDS 60.0%
TTCGGGTCGAAGACTGGAGC+CGG - chr8_3:3963806-3963825 None:intergenic 60.0%
GTTGCTCCAGCAATGGCTGC+TGG + chr8_3:3965274-3965293 Msa1270610:CDS 60.0%
! CAATGGCTGCTGGTGCTGGA+GGG + chr8_3:3965284-3965303 Msa1270610:CDS 60.0%
! AATGGCTGCTGGTGCTGGAG+GGG + chr8_3:3965285-3965304 Msa1270610:CDS 60.0%
CGCCCATCTCCTCTGACGGA+AGG - chr8_3:3962780-3962799 None:intergenic 65.0%
CCGTCAGAGGAGATGGGCGT+TGG + chr8_3:3962781-3962800 Msa1270610:CDS 65.0%
!! GGGCGTTGGTACTCGCGAGA+TGG + chr8_3:3962795-3962814 Msa1270610:CDS 65.0%
CCAGCACCAGCAGCCATTGC+TGG - chr8_3:3965283-3965302 None:intergenic 65.0%
CCAGCAATGGCTGCTGGTGC+TGG + chr8_3:3965280-3965299 Msa1270610:CDS 65.0%
! GCAATGGCTGCTGGTGCTGG+AGG + chr8_3:3965283-3965302 Msa1270610:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 3962439 3967402 3962439 ID=Msa1270610;Name=Msa1270610
chr8_3 mRNA 3962439 3967402 3962439 ID=Msa1270610-mRNA-1;Parent=Msa1270610;Name=Msa1270610-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|1|1|1|1|1|12|344|346
chr8_3 exon 3962439 3962546 3962439 ID=Msa1270610-mRNA-1:exon:1274;Parent=Msa1270610-mRNA-1
chr8_3 exon 3962622 3962681 3962622 ID=Msa1270610-mRNA-1:exon:1275;Parent=Msa1270610-mRNA-1
chr8_3 exon 3962775 3962861 3962775 ID=Msa1270610-mRNA-1:exon:1276;Parent=Msa1270610-mRNA-1
chr8_3 exon 3963772 3963843 3963772 ID=Msa1270610-mRNA-1:exon:1277;Parent=Msa1270610-mRNA-1
chr8_3 exon 3964158 3964213 3964158 ID=Msa1270610-mRNA-1:exon:1278;Parent=Msa1270610-mRNA-1
chr8_3 exon 3964496 3964581 3964496 ID=Msa1270610-mRNA-1:exon:1279;Parent=Msa1270610-mRNA-1
chr8_3 exon 3964781 3964871 3964781 ID=Msa1270610-mRNA-1:exon:1280;Parent=Msa1270610-mRNA-1
chr8_3 exon 3964960 3965117 3964960 ID=Msa1270610-mRNA-1:exon:1281;Parent=Msa1270610-mRNA-1
chr8_3 exon 3965215 3965306 3965215 ID=Msa1270610-mRNA-1:exon:1282;Parent=Msa1270610-mRNA-1
chr8_3 exon 3966179 3966259 3966179 ID=Msa1270610-mRNA-1:exon:1283;Parent=Msa1270610-mRNA-1
chr8_3 exon 3966563 3966636 3966563 ID=Msa1270610-mRNA-1:exon:1284;Parent=Msa1270610-mRNA-1
chr8_3 exon 3966983 3967402 3966983 ID=Msa1270610-mRNA-1:exon:1285;Parent=Msa1270610-mRNA-1
chr8_3 CDS 3962439 3962546 3962439 ID=Msa1270610-mRNA-1:cds;Parent=Msa1270610-mRNA-1
chr8_3 CDS 3962622 3962681 3962622 ID=Msa1270610-mRNA-1:cds;Parent=Msa1270610-mRNA-1
chr8_3 CDS 3962775 3962861 3962775 ID=Msa1270610-mRNA-1:cds;Parent=Msa1270610-mRNA-1
chr8_3 CDS 3963772 3963843 3963772 ID=Msa1270610-mRNA-1:cds;Parent=Msa1270610-mRNA-1
chr8_3 CDS 3964158 3964213 3964158 ID=Msa1270610-mRNA-1:cds;Parent=Msa1270610-mRNA-1
chr8_3 CDS 3964496 3964581 3964496 ID=Msa1270610-mRNA-1:cds;Parent=Msa1270610-mRNA-1
chr8_3 CDS 3964781 3964871 3964781 ID=Msa1270610-mRNA-1:cds;Parent=Msa1270610-mRNA-1
chr8_3 CDS 3964960 3965117 3964960 ID=Msa1270610-mRNA-1:cds;Parent=Msa1270610-mRNA-1
chr8_3 CDS 3965215 3965306 3965215 ID=Msa1270610-mRNA-1:cds;Parent=Msa1270610-mRNA-1
chr8_3 CDS 3966179 3966259 3966179 ID=Msa1270610-mRNA-1:cds;Parent=Msa1270610-mRNA-1
chr8_3 CDS 3966563 3966636 3966563 ID=Msa1270610-mRNA-1:cds;Parent=Msa1270610-mRNA-1
chr8_3 CDS 3966983 3967058 3966983 ID=Msa1270610-mRNA-1:cds;Parent=Msa1270610-mRNA-1
chr8_3 three_prime_UTR 3967059 3967402 3967059 ID=Msa1270610-mRNA-1:three_prime_utr;Parent=Msa1270610-mRNA-1
Gene Sequence

>Msa1270610

TACAAAACTTCTTCTCTGCAGACCTTAAAGAATGCTTTGTCTCCTTACAAATTAGGAGGTGCAGCTGGTGGAAGTGATTTTGATCCAAAGGGCAAAAGTGATAATGAGATTATGCGATTTTGCCAGAGTTTCATGTGTGAGATGTATCATTACCTTGGTCCTGACAAGGACCTTCCGTCAGAGGAGATGGGCGTTGGTACTCGCGAGATGGGGTATCTTTTTGGACAGTATAGACGTCTAGTTGGTCATTTTCAGGGAACTTTCACAGGGCCAAGAATATTTTGGTCCGGCTCCAGTCTTCGACCCGAAGCTACTGGTTATGGACTGGTTTTCTTTGCCCAGCTCATGCTAGCTGACATGAATAAAGAACTCAAAGGATTAAGATGTGTAGTGAGTGGTTCTGGAAAGATTGCACTGCATGTTTTAGAGAAGCTAATTGCATATGGTGCTCTTCCCATTTCAGTATCAGATTCTAGGGGATATTTGGTTGATGAAGATGGGTTTGACTACATGAAAGTACAATTTTTGAGAGACATCAAAGCTCAGCATAGAAGTTTGCGAGACTATTCAAAGACCTATGCTCGGTCCAAATATTATGATGAAGCAAAACCATGGACAGAAAGGTGCGATCTTGCATTTGCTTGTGCAACACAGAATGAGATTGATCAATCTGATGCCATGAATTTGGTTAATTCAGGTTGTCGTATACTAATAGAAGGTTCAAACATGCCCTGTACTACTGACGCAGTTCAAGTTCTGAGGAAAGCTAATGTTCTTGTTGCTCCAGCAATGGCTGCTGGTGCTGGAGGGGTTGTGGCTGGAGAACTTGAACTGAATCATGAGTGCAGTTTGATGAACTGGTCACCGGAGGACTTTGAATCTAAATTACAGGAAGCAATGAAACAGACTTATCAAAGAGCTATAAAGGCTGCAACTGATTTTGGTTATCAAAAAGAAAGCCCCGAGGCTTTGGTACATGGAGCAGTTATCTCTGCCTTCCTAACTATTGCTCAAGCCATGACTGATCAAGGCTGTGTATAA

Protein sequence

>Msa1270610

YKTSSLQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMCEMYHYLGPDKDLPSEEMGVGTREMGYLFGQYRRLVGHFQGTFTGPRIFWSGSSLRPEATGYGLVFFAQLMLADMNKELKGLRCVVSGSGKIALHVLEKLIAYGALPISVSDSRGYLVDEDGFDYMKVQFLRDIKAQHRSLRDYSKTYARSKYYDEAKPWTERCDLAFACATQNEIDQSDAMNLVNSGCRILIEGSNMPCTTDAVQVLRKANVLVAPAMAAGAGGVVAGELELNHECSLMNWSPEDFESKLQEAMKQTYQRAIKAATDFGYQKESPEALVHGAVISAFLTIAQAMTDQGCV*