AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1243870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1243870 MtrunA17_Chr8g0358261 90.764 314 21 5 23 332 1 310 0.0 551
Msa1243870 MtrunA17_Chr2g0311981 43.421 380 151 10 1 331 1 365 6.86e-87 265
Msa1243870 MtrunA17_Chr4g0043501 35.380 342 160 10 1 331 1 292 4.41e-58 189
Msa1243870 MtrunA17_Chr2g0291661 34.078 358 169 10 1 331 1 318 3.07e-57 187
Msa1243870 MtrunA17_Chr5g0400041 31.390 223 130 3 109 331 135 334 3.89e-31 119
Msa1243870 MtrunA17_Chr1g0153261 28.507 221 134 4 109 329 142 338 3.98e-24 100
Msa1243870 MtrunA17_Chr4g0055201 31.532 222 124 4 109 329 135 329 1.71e-23 99.0
Msa1243870 MtrunA17_Chr4g0018631 27.149 221 117 6 101 319 21 199 7.89e-21 89.0
Msa1243870 MtrunA17_Chr3g0145641 28.019 207 101 4 121 327 20 178 1.26e-17 79.7
Msa1243870 MtrunA17_Chr2g0319361 25.943 212 113 4 118 329 83 250 2.30e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1243870 AT3G12920.1 38.655 357 169 13 1 331 1 333 1.59e-64 207
Msa1243870 AT5G45100.1 35.503 338 165 9 1 331 1 292 1.73e-59 193
Msa1243870 AT1G79110.2 36.842 380 164 12 1 331 1 353 5.77e-57 188
Msa1243870 AT5G45100.2 37.931 261 122 6 73 331 43 265 1.76e-55 182
Msa1243870 AT1G79110.3 45.148 237 99 5 107 331 114 331 6.49e-55 182
Msa1243870 AT1G79110.1 36.554 383 164 13 1 331 1 356 7.75e-55 183
Msa1243870 AT4G19700.1 33.724 341 177 11 1 331 1 302 4.68e-51 172
Msa1243870 AT4G35070.2 32.420 219 119 5 114 331 19 209 2.77e-26 104
Msa1243870 AT4G35070.1 32.420 219 119 5 114 331 74 264 4.37e-26 105
Msa1243870 AT1G60610.2 28.696 230 143 6 101 329 128 337 4.97e-23 98.2
Msa1243870 AT1G60610.4 28.696 230 143 6 101 329 128 337 4.97e-23 98.2
Msa1243870 AT1G60610.1 28.696 230 143 6 101 329 128 337 4.97e-23 98.2
Msa1243870 AT1G60610.5 28.696 230 143 6 101 329 128 337 4.97e-23 98.2
Msa1243870 AT1G60610.3 28.696 230 143 6 101 329 128 337 4.97e-23 98.2
Msa1243870 AT4G17680.1 31.193 218 123 6 113 329 121 312 6.57e-23 97.4
Msa1243870 AT1G45976.1 27.602 221 129 4 109 329 134 323 7.72e-23 97.4
Msa1243870 AT4G17680.2 31.193 218 123 6 113 329 49 240 1.44e-22 95.1
Msa1243870 AT1G32740.3 28.311 219 133 3 110 327 68 263 3.23e-22 94.7
Msa1243870 AT1G32740.2 28.311 219 133 3 110 327 68 263 3.23e-22 94.7
Msa1243870 AT1G32740.1 28.507 221 130 5 110 327 112 307 3.63e-22 95.5
Msa1243870 AT1G32740.4 28.507 221 130 5 110 327 101 296 4.49e-22 94.7
Msa1243870 AT1G10650.2 29.439 214 126 4 118 329 90 280 1.10e-21 93.6
Msa1243870 AT1G10650.1 29.439 214 126 4 118 329 146 336 1.61e-21 94.0
Msa1243870 AT4G17680.3 32.850 207 109 8 125 329 10 188 1.19e-18 82.8
Msa1243870 AT5G47050.1 27.711 249 144 5 89 329 77 297 3.01e-17 81.3

Find 67 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATATACGAAGAGAGAATT+TGG 0.189313 8_2:-30815140 None:intergenic
TCATCACTGTTACCACTTTC+AGG 0.214320 8_2:+30815502 Msa1243870:CDS
TTTAAGTTTATCCAATATTA+TGG 0.248693 8_2:+30816630 Msa1243870:three_prime_UTR
TATTCATGGGAATAGTAATT+AGG 0.261245 8_2:+30816479 Msa1243870:three_prime_UTR
GTTGAAGTTGAGAAGGAAAA+AGG 0.285209 8_2:-30815300 None:intergenic
TTTGGTGATTATATTATGTT+AGG 0.297926 8_2:+30816558 Msa1243870:three_prime_UTR
TCTCTTATGATGATTCTATA+AGG 0.300837 8_2:-30815208 None:intergenic
GATATACGAAGAGAGAATTT+GGG 0.304932 8_2:-30815139 None:intergenic
ATTGAGTTGTCAAGGTTATA+TGG 0.308322 8_2:-30815071 None:intergenic
TATTGATTAATTATTATTCA+TGG 0.331597 8_2:+30816465 Msa1243870:exon
ATATAATGCAACCATAATAT+TGG 0.336483 8_2:-30816641 None:intergenic
TGAGGTGAAGGTTATGGTTA+AGG 0.348241 8_2:-30815168 None:intergenic
GAGAGAAACAATGATGATAA+TGG 0.367299 8_2:+30815910 Msa1243870:CDS
CTTCTCAACTTCAACCCAAT+AGG 0.388096 8_2:+30815308 Msa1243870:CDS
GTGTTCAATGTGTGGGGCTA+TGG 0.402214 8_2:+30816390 Msa1243870:CDS
TGCCGTTGCGGCGGAGGCGG+AGG 0.404441 8_2:+30816189 Msa1243870:CDS
AAGGTTATGGTTAAGGAAAA+AGG 0.406288 8_2:-30815161 None:intergenic
AAGATTGTACTATACCTATT+GGG 0.415314 8_2:-30815322 None:intergenic
ACAAATCCTTATGCAACAAA+TGG 0.418067 8_2:+30816114 Msa1243870:CDS
ATATTCATCATTACTACAAC+AGG 0.424115 8_2:-30816221 None:intergenic
AGTAATGACGGCGCAGGATA+AGG 0.449129 8_2:+30816261 Msa1243870:CDS
TATGCATGGAGAATCAAATC+TGG 0.461576 8_2:+30816035 Msa1243870:CDS
TATGTTTGTGTTCAATGTGT+GGG 0.464104 8_2:+30816383 Msa1243870:CDS
GAAGATGGTGTCTGGTTTCA+CGG 0.465973 8_2:-30815614 None:intergenic
GTTGTCAAGGTTATATGGTA+AGG 0.466326 8_2:-30815066 None:intergenic
TTGTAAGCGAAGATGGTGTC+TGG 0.480918 8_2:-30815622 None:intergenic
ATTGATTAATTATTATTCAT+GGG 0.482494 8_2:+30816466 Msa1243870:exon
ATGAATATTGTGGGTGGCGT+AGG 0.488245 8_2:+30816236 Msa1243870:CDS
GGGAATAGTAATTAGGACTT+AGG 0.493262 8_2:+30816486 Msa1243870:three_prime_UTR
AACGTTGTTGTAAGCGAAGA+TGG 0.493808 8_2:-30815629 None:intergenic
CACAAACATAAGTGTCTACA+AGG 0.505076 8_2:-30816370 None:intergenic
CGGAGGAAATCGGTTATGAA+AGG 0.505897 8_2:-30815577 None:intergenic
GATTTAACAGAATCACATAT+AGG 0.518774 8_2:-30816424 None:intergenic
AAGGATGAAGGTACTAGTAG+TGG 0.520250 8_2:+30816280 Msa1243870:CDS
AAAAGTGAAAACACTATGCA+TGG 0.524997 8_2:+30816021 Msa1243870:CDS
TGTAGTAATGATGAATATTG+TGG 0.529768 8_2:+30816226 Msa1243870:CDS
ATCCTCCGCCTCCGCCGCAA+CGG 0.530746 8_2:-30816191 None:intergenic
AGCATGCAATTGAGTTGTCA+AGG 0.540841 8_2:-30815079 None:intergenic
AATTAGGACTTAGGAGATGG+TGG 0.543464 8_2:+30816495 Msa1243870:three_prime_UTR
ATAGATTATGCAGAAACTGT+GGG 0.549558 8_2:+30816320 Msa1243870:CDS
TTATGTTTGTGTTCAATGTG+TGG 0.554213 8_2:+30816382 Msa1243870:CDS
GACGGTGAATATAGCGGTGG+CGG 0.555960 8_2:+30816160 Msa1243870:CDS
GTTGAGATGGTGAGCATCGA+CGG 0.556642 8_2:-30815278 None:intergenic
TTAGACGGAGAAGTTTAGAG+TGG 0.557294 8_2:+30815868 Msa1243870:intron
AGTAATTAGGACTTAGGAGA+TGG 0.569358 8_2:+30816492 Msa1243870:three_prime_UTR
CATGTTTGTATAATTTGTGT+CGG 0.569763 8_2:-30815467 None:intergenic
GTAGTAATGATGAATATTGT+GGG 0.574573 8_2:+30816227 Msa1243870:CDS
CTATTGGGTTGAAGTTGAGA+AGG 0.576004 8_2:-30815307 None:intergenic
GGAGGAAATCGGTTATGAAA+GGG 0.577225 8_2:-30815576 None:intergenic
AATAGATTATGCAGAAACTG+TGG 0.580193 8_2:+30816319 Msa1243870:CDS
TTATGCAGAAACTGTGGGGA+AGG 0.589265 8_2:+30816325 Msa1243870:CDS
ATGTTTGTGTTCAATGTGTG+GGG 0.595264 8_2:+30816384 Msa1243870:CDS
ACGGCGCAGGATAAGGATGA+AGG 0.596413 8_2:+30816268 Msa1243870:CDS
TGAATATTGTGGGTGGCGTA+GGG 0.602718 8_2:+30816237 Msa1243870:CDS
GTTATGAAAGGGTTGTTCGA+CGG 0.613447 8_2:-30815565 None:intergenic
ACGGTGGTTGTGCCTGAAAG+TGG 0.615359 8_2:-30815514 None:intergenic
TTGTTCGACGGAGATTGCGA+CGG 0.619398 8_2:-30815553 None:intergenic
TAGGGTAGTAATGACGGCGC+AGG 0.626421 8_2:+30816255 Msa1243870:CDS
GTGGCGTAGGGTAGTAATGA+CGG 0.629194 8_2:+30816249 Msa1243870:CDS
TTCAGGCACAACCACCGTGT+CGG 0.634510 8_2:+30815519 Msa1243870:CDS
AGAAATGAAGTTGTCGATGT+CGG 0.644465 8_2:-30815749 None:intergenic
ATATACGAAGAGAGAATTTG+GGG 0.645516 8_2:-30815138 None:intergenic
GGCGACGGTGAATATAGCGG+TGG 0.684894 8_2:+30816157 Msa1243870:CDS
TAGATTATGCAGAAACTGTG+GGG 0.699966 8_2:+30816321 Msa1243870:CDS
AACGGCGACGGTGAATATAG+CGG 0.708230 8_2:+30816154 Msa1243870:CDS
GTAATGATGAATATTGTGGG+TGG 0.732674 8_2:+30816230 Msa1243870:CDS
GATGGTGTCTGGTTTCACGG+TGG 0.784629 8_2:-30815611 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGATTAATTATTATTCA+TGG + chr8_2:30816465-30816484 Msa1243870:exon 10.0%
!! ATTGATTAATTATTATTCAT+GGG + chr8_2:30816466-30816485 Msa1243870:exon 10.0%
!!! TTTTTTTTTTTTGGATATAA+TGG + chr8_2:30816523-30816542 Msa1243870:three_prime_UTR 10.0%
!!! TTTTTTTTTTTGGATATAAT+GGG + chr8_2:30816524-30816543 Msa1243870:three_prime_UTR 10.0%
!!! TATTGATTAATTATTATTCA+TGG + chr8_2:30816465-30816484 Msa1243870:exon 10.0%
!! ATTGATTAATTATTATTCAT+GGG + chr8_2:30816466-30816485 Msa1243870:exon 10.0%
!!! TTTTTTTTTTTTGGATATAA+TGG + chr8_2:30816523-30816542 Msa1243870:three_prime_UTR 10.0%
!!! TTTTTTTTTTTGGATATAAT+GGG + chr8_2:30816524-30816543 Msa1243870:three_prime_UTR 10.0%
!! GAAAAAAATTTAGTAGAATA+AGG - chr8_2:30815793-30815812 None:intergenic 15.0%
!!! GTGGTTTTTTTTTTTTTTTT+TGG + chr8_2:30816514-30816533 Msa1243870:three_prime_UTR 15.0%
!!! TATTATGTTAGGTTTTTTTT+TGG + chr8_2:30816569-30816588 Msa1243870:three_prime_UTR 15.0%
!!! TTTTTTTTGGTACAATATTA+TGG + chr8_2:30816582-30816601 Msa1243870:three_prime_UTR 15.0%
!!! GGTTTTATTTTAATATACAA+TGG + chr8_2:30816607-30816626 Msa1243870:three_prime_UTR 15.0%
!!! TTTAAGTTTATCCAATATTA+TGG + chr8_2:30816630-30816649 Msa1243870:three_prime_UTR 15.0%
!! GAAAAAAATTTAGTAGAATA+AGG - chr8_2:30815793-30815812 None:intergenic 15.0%
!!! GTGGTTTTTTTTTTTTTTTT+TGG + chr8_2:30816514-30816533 Msa1243870:three_prime_UTR 15.0%
!!! TATTATGTTAGGTTTTTTTT+TGG + chr8_2:30816569-30816588 Msa1243870:three_prime_UTR 15.0%
!!! TTTTTTTTGGTACAATATTA+TGG + chr8_2:30816582-30816601 Msa1243870:three_prime_UTR 15.0%
!!! GGTTTTATTTTAATATACAA+TGG + chr8_2:30816607-30816626 Msa1243870:three_prime_UTR 15.0%
!!! TTTAAGTTTATCCAATATTA+TGG + chr8_2:30816630-30816649 Msa1243870:three_prime_UTR 15.0%
!!! TTAAGTTTAAAATTGTGCAT+TGG - chr8_2:30814843-30814862 None:intergenic 20.0%
!! ACAAAACAAAACAAAAAACA+TGG - chr8_2:30815384-30815403 None:intergenic 20.0%
!! AAATTTAGTAGAATAAGGTA+AGG - chr8_2:30815788-30815807 None:intergenic 20.0%
!!! TTTGGTGATTATATTATGTT+AGG + chr8_2:30816558-30816577 Msa1243870:three_prime_UTR 20.0%
!! ATATAATGCAACCATAATAT+TGG - chr8_2:30816644-30816663 None:intergenic 20.0%
!!! TTAAGTTTAAAATTGTGCAT+TGG - chr8_2:30814843-30814862 None:intergenic 20.0%
!! ACAAAACAAAACAAAAAACA+TGG - chr8_2:30815384-30815403 None:intergenic 20.0%
!! AAATTTAGTAGAATAAGGTA+AGG - chr8_2:30815788-30815807 None:intergenic 20.0%
!!! TTTGGTGATTATATTATGTT+AGG + chr8_2:30816558-30816577 Msa1243870:three_prime_UTR 20.0%
!! ATATAATGCAACCATAATAT+TGG - chr8_2:30816644-30816663 None:intergenic 20.0%
! ATAGTGCAAACATTCTAAAT+AGG + chr8_2:30815005-30815024 Msa1243870:intron 25.0%
!!! TAGTATTTATTTTGAGGTGA+AGG - chr8_2:30815183-30815202 None:intergenic 25.0%
!!! GTGTAGTAGTATTTATTTTG+AGG - chr8_2:30815189-30815208 None:intergenic 25.0%
! TCTCTTATGATGATTCTATA+AGG - chr8_2:30815211-30815230 None:intergenic 25.0%
! AAGATTGTACTATACCTATT+GGG - chr8_2:30815325-30815344 None:intergenic 25.0%
! CAAAACAAAAAACATGGTTT+AGG - chr8_2:30815378-30815397 None:intergenic 25.0%
!! CATGTTTGTATAATTTGTGT+CGG - chr8_2:30815470-30815489 None:intergenic 25.0%
! AAAAATCTTCACTGATGAAA+GGG - chr8_2:30815705-30815724 None:intergenic 25.0%
!!! TTGCATGTGTTTTTTTTAGA+CGG + chr8_2:30815853-30815872 Msa1243870:intron 25.0%
! ATATTCATCATTACTACAAC+AGG - chr8_2:30816224-30816243 None:intergenic 25.0%
! TGTAGTAATGATGAATATTG+TGG + chr8_2:30816226-30816245 Msa1243870:CDS 25.0%
! GTAGTAATGATGAATATTGT+GGG + chr8_2:30816227-30816246 Msa1243870:CDS 25.0%
! GATTTAACAGAATCACATAT+AGG - chr8_2:30816427-30816446 None:intergenic 25.0%
! TATTCATGGGAATAGTAATT+AGG + chr8_2:30816479-30816498 Msa1243870:three_prime_UTR 25.0%
!!! TAATGGGAGTAGTTTTATTT+TGG + chr8_2:30816540-30816559 Msa1243870:three_prime_UTR 25.0%
!! TTTTGGTACAATATTATGGT+TGG + chr8_2:30816586-30816605 Msa1243870:three_prime_UTR 25.0%
! ATAGTGCAAACATTCTAAAT+AGG + chr8_2:30815005-30815024 Msa1243870:intron 25.0%
!!! TAGTATTTATTTTGAGGTGA+AGG - chr8_2:30815183-30815202 None:intergenic 25.0%
!!! GTGTAGTAGTATTTATTTTG+AGG - chr8_2:30815189-30815208 None:intergenic 25.0%
! TCTCTTATGATGATTCTATA+AGG - chr8_2:30815211-30815230 None:intergenic 25.0%
! AAGATTGTACTATACCTATT+GGG - chr8_2:30815325-30815344 None:intergenic 25.0%
! CAAAACAAAAAACATGGTTT+AGG - chr8_2:30815378-30815397 None:intergenic 25.0%
!! CATGTTTGTATAATTTGTGT+CGG - chr8_2:30815470-30815489 None:intergenic 25.0%
! AAAAATCTTCACTGATGAAA+GGG - chr8_2:30815705-30815724 None:intergenic 25.0%
!!! TTGCATGTGTTTTTTTTAGA+CGG + chr8_2:30815853-30815872 Msa1243870:intron 25.0%
! ATATTCATCATTACTACAAC+AGG - chr8_2:30816224-30816243 None:intergenic 25.0%
! TGTAGTAATGATGAATATTG+TGG + chr8_2:30816226-30816245 Msa1243870:CDS 25.0%
! GTAGTAATGATGAATATTGT+GGG + chr8_2:30816227-30816246 Msa1243870:CDS 25.0%
! GATTTAACAGAATCACATAT+AGG - chr8_2:30816427-30816446 None:intergenic 25.0%
! TATTCATGGGAATAGTAATT+AGG + chr8_2:30816479-30816498 Msa1243870:three_prime_UTR 25.0%
!!! TAATGGGAGTAGTTTTATTT+TGG + chr8_2:30816540-30816559 Msa1243870:three_prime_UTR 25.0%
!! TTTTGGTACAATATTATGGT+TGG + chr8_2:30816586-30816605 Msa1243870:three_prime_UTR 25.0%
TCAACTAGGTCAAGTAATAT+GGG - chr8_2:30814806-30814825 None:intergenic 30.0%
ATAGGTCAAGTAATATGAGA+CGG + chr8_2:30815023-30815042 Msa1243870:intron 30.0%
! ATTGAGTTGTCAAGGTTATA+TGG - chr8_2:30815074-30815093 None:intergenic 30.0%
ATATACGAAGAGAGAATTTG+GGG - chr8_2:30815141-30815160 None:intergenic 30.0%
GATATACGAAGAGAGAATTT+GGG - chr8_2:30815142-30815161 None:intergenic 30.0%
AAGGTTATGGTTAAGGAAAA+AGG - chr8_2:30815164-30815183 None:intergenic 30.0%
!!! TTATTTTGAGGTGAAGGTTA+TGG - chr8_2:30815177-30815196 None:intergenic 30.0%
GAAGATTGTACTATACCTAT+TGG - chr8_2:30815326-30815345 None:intergenic 30.0%
!!! AATCTCTAGAACGTTTTTGT+GGG - chr8_2:30815663-30815682 None:intergenic 30.0%
GAAAAATCTTCACTGATGAA+AGG - chr8_2:30815706-30815725 None:intergenic 30.0%
GAGAGAAACAATGATGATAA+TGG + chr8_2:30815910-30815929 Msa1243870:CDS 30.0%
AAAAGTGAAAACACTATGCA+TGG + chr8_2:30816021-30816040 Msa1243870:CDS 30.0%
ACAAATCCTTATGCAACAAA+TGG + chr8_2:30816114-30816133 Msa1243870:CDS 30.0%
!! TGTTTTCCATTTGTTGCATA+AGG - chr8_2:30816123-30816142 None:intergenic 30.0%
GAAAACAACAACAACAACAA+CGG + chr8_2:30816136-30816155 Msa1243870:CDS 30.0%
AATAGATTATGCAGAAACTG+TGG + chr8_2:30816319-30816338 Msa1243870:CDS 30.0%
ATAGATTATGCAGAAACTGT+GGG + chr8_2:30816320-30816339 Msa1243870:CDS 30.0%
TTATGTTTGTGTTCAATGTG+TGG + chr8_2:30816382-30816401 Msa1243870:CDS 30.0%
TATGTTTGTGTTCAATGTGT+GGG + chr8_2:30816383-30816402 Msa1243870:CDS 30.0%
TCAACTAGGTCAAGTAATAT+GGG - chr8_2:30814806-30814825 None:intergenic 30.0%
ATAGGTCAAGTAATATGAGA+CGG + chr8_2:30815023-30815042 Msa1243870:intron 30.0%
! ATTGAGTTGTCAAGGTTATA+TGG - chr8_2:30815074-30815093 None:intergenic 30.0%
ATATACGAAGAGAGAATTTG+GGG - chr8_2:30815141-30815160 None:intergenic 30.0%
GATATACGAAGAGAGAATTT+GGG - chr8_2:30815142-30815161 None:intergenic 30.0%
AAGGTTATGGTTAAGGAAAA+AGG - chr8_2:30815164-30815183 None:intergenic 30.0%
!!! TTATTTTGAGGTGAAGGTTA+TGG - chr8_2:30815177-30815196 None:intergenic 30.0%
GAAGATTGTACTATACCTAT+TGG - chr8_2:30815326-30815345 None:intergenic 30.0%
!!! AATCTCTAGAACGTTTTTGT+GGG - chr8_2:30815663-30815682 None:intergenic 30.0%
GAAAAATCTTCACTGATGAA+AGG - chr8_2:30815706-30815725 None:intergenic 30.0%
GAGAGAAACAATGATGATAA+TGG + chr8_2:30815910-30815929 Msa1243870:CDS 30.0%
AAAAGTGAAAACACTATGCA+TGG + chr8_2:30816021-30816040 Msa1243870:CDS 30.0%
ACAAATCCTTATGCAACAAA+TGG + chr8_2:30816114-30816133 Msa1243870:CDS 30.0%
!! TGTTTTCCATTTGTTGCATA+AGG - chr8_2:30816123-30816142 None:intergenic 30.0%
GAAAACAACAACAACAACAA+CGG + chr8_2:30816136-30816155 Msa1243870:CDS 30.0%
AATAGATTATGCAGAAACTG+TGG + chr8_2:30816319-30816338 Msa1243870:CDS 30.0%
ATAGATTATGCAGAAACTGT+GGG + chr8_2:30816320-30816339 Msa1243870:CDS 30.0%
TTATGTTTGTGTTCAATGTG+TGG + chr8_2:30816382-30816401 Msa1243870:CDS 30.0%
TATGTTTGTGTTCAATGTGT+GGG + chr8_2:30816383-30816402 Msa1243870:CDS 30.0%
GTCAACTAGGTCAAGTAATA+TGG - chr8_2:30814807-30814826 None:intergenic 35.0%
GTTGTCAAGGTTATATGGTA+AGG - chr8_2:30815069-30815088 None:intergenic 35.0%
GGATATACGAAGAGAGAATT+TGG - chr8_2:30815143-30815162 None:intergenic 35.0%
!!! ACGGTCATGTTTTGATTCTT+AGG - chr8_2:30815262-30815281 None:intergenic 35.0%
GTTGAAGTTGAGAAGGAAAA+AGG - chr8_2:30815303-30815322 None:intergenic 35.0%
!!! TGTTTTTTGACGGAGGAAAT+CGG - chr8_2:30815590-30815609 None:intergenic 35.0%
!!! GAATCTCTAGAACGTTTTTG+TGG - chr8_2:30815664-30815683 None:intergenic 35.0%
AGAAATGAAGTTGTCGATGT+CGG - chr8_2:30815752-30815771 None:intergenic 35.0%
TATGCATGGAGAATCAAATC+TGG + chr8_2:30816035-30816054 Msa1243870:CDS 35.0%
GTAATGATGAATATTGTGGG+TGG + chr8_2:30816230-30816249 Msa1243870:CDS 35.0%
TAGATTATGCAGAAACTGTG+GGG + chr8_2:30816321-30816340 Msa1243870:CDS 35.0%
CACAAACATAAGTGTCTACA+AGG - chr8_2:30816373-30816392 None:intergenic 35.0%
ATGTTTGTGTTCAATGTGTG+GGG + chr8_2:30816384-30816403 Msa1243870:CDS 35.0%
GGGAATAGTAATTAGGACTT+AGG + chr8_2:30816486-30816505 Msa1243870:three_prime_UTR 35.0%
AGTAATTAGGACTTAGGAGA+TGG + chr8_2:30816492-30816511 Msa1243870:three_prime_UTR 35.0%
GTCAACTAGGTCAAGTAATA+TGG - chr8_2:30814807-30814826 None:intergenic 35.0%
GTTGTCAAGGTTATATGGTA+AGG - chr8_2:30815069-30815088 None:intergenic 35.0%
GGATATACGAAGAGAGAATT+TGG - chr8_2:30815143-30815162 None:intergenic 35.0%
!!! ACGGTCATGTTTTGATTCTT+AGG - chr8_2:30815262-30815281 None:intergenic 35.0%
GTTGAAGTTGAGAAGGAAAA+AGG - chr8_2:30815303-30815322 None:intergenic 35.0%
!!! TGTTTTTTGACGGAGGAAAT+CGG - chr8_2:30815590-30815609 None:intergenic 35.0%
!!! GAATCTCTAGAACGTTTTTG+TGG - chr8_2:30815664-30815683 None:intergenic 35.0%
AGAAATGAAGTTGTCGATGT+CGG - chr8_2:30815752-30815771 None:intergenic 35.0%
TATGCATGGAGAATCAAATC+TGG + chr8_2:30816035-30816054 Msa1243870:CDS 35.0%
GTAATGATGAATATTGTGGG+TGG + chr8_2:30816230-30816249 Msa1243870:CDS 35.0%
TAGATTATGCAGAAACTGTG+GGG + chr8_2:30816321-30816340 Msa1243870:CDS 35.0%
CACAAACATAAGTGTCTACA+AGG - chr8_2:30816373-30816392 None:intergenic 35.0%
ATGTTTGTGTTCAATGTGTG+GGG + chr8_2:30816384-30816403 Msa1243870:CDS 35.0%
GGGAATAGTAATTAGGACTT+AGG + chr8_2:30816486-30816505 Msa1243870:three_prime_UTR 35.0%
AGTAATTAGGACTTAGGAGA+TGG + chr8_2:30816492-30816511 Msa1243870:three_prime_UTR 35.0%
CTAGGTCAAGTAATATGGGA+CGG - chr8_2:30814802-30814821 None:intergenic 40.0%
GTCAAGTAATATGAGACGGA+GGG + chr8_2:30815027-30815046 Msa1243870:intron 40.0%
! AGCATGCAATTGAGTTGTCA+AGG - chr8_2:30815082-30815101 None:intergenic 40.0%
TGAGGTGAAGGTTATGGTTA+AGG - chr8_2:30815171-30815190 None:intergenic 40.0%
GAGAAGGAAAAAGGTTGAGA+TGG - chr8_2:30815294-30815313 None:intergenic 40.0%
!! CTATTGGGTTGAAGTTGAGA+AGG - chr8_2:30815310-30815329 None:intergenic 40.0%
CTTCTCAACTTCAACCCAAT+AGG + chr8_2:30815308-30815327 Msa1243870:CDS 40.0%
TCATCACTGTTACCACTTTC+AGG + chr8_2:30815502-30815521 Msa1243870:CDS 40.0%
GTTATGAAAGGGTTGTTCGA+CGG - chr8_2:30815568-30815587 None:intergenic 40.0%
GGAGGAAATCGGTTATGAAA+GGG - chr8_2:30815579-30815598 None:intergenic 40.0%
!!! TCACGGTGGATGTTTTTTGA+CGG - chr8_2:30815600-30815619 None:intergenic 40.0%
AACGTTGTTGTAAGCGAAGA+TGG - chr8_2:30815632-30815651 None:intergenic 40.0%
TTAGACGGAGAAGTTTAGAG+TGG + chr8_2:30815868-30815887 Msa1243870:intron 40.0%
!! AAGGATGAAGGTACTAGTAG+TGG + chr8_2:30816280-30816299 Msa1243870:CDS 40.0%
AATTAGGACTTAGGAGATGG+TGG + chr8_2:30816495-30816514 Msa1243870:three_prime_UTR 40.0%
CTAGGTCAAGTAATATGGGA+CGG - chr8_2:30814802-30814821 None:intergenic 40.0%
GTCAAGTAATATGAGACGGA+GGG + chr8_2:30815027-30815046 Msa1243870:intron 40.0%
! AGCATGCAATTGAGTTGTCA+AGG - chr8_2:30815082-30815101 None:intergenic 40.0%
TGAGGTGAAGGTTATGGTTA+AGG - chr8_2:30815171-30815190 None:intergenic 40.0%
GAGAAGGAAAAAGGTTGAGA+TGG - chr8_2:30815294-30815313 None:intergenic 40.0%
!! CTATTGGGTTGAAGTTGAGA+AGG - chr8_2:30815310-30815329 None:intergenic 40.0%
CTTCTCAACTTCAACCCAAT+AGG + chr8_2:30815308-30815327 Msa1243870:CDS 40.0%
TCATCACTGTTACCACTTTC+AGG + chr8_2:30815502-30815521 Msa1243870:CDS 40.0%
GTTATGAAAGGGTTGTTCGA+CGG - chr8_2:30815568-30815587 None:intergenic 40.0%
GGAGGAAATCGGTTATGAAA+GGG - chr8_2:30815579-30815598 None:intergenic 40.0%
!!! TCACGGTGGATGTTTTTTGA+CGG - chr8_2:30815600-30815619 None:intergenic 40.0%
AACGTTGTTGTAAGCGAAGA+TGG - chr8_2:30815632-30815651 None:intergenic 40.0%
TTAGACGGAGAAGTTTAGAG+TGG + chr8_2:30815868-30815887 Msa1243870:intron 40.0%
!! AAGGATGAAGGTACTAGTAG+TGG + chr8_2:30816280-30816299 Msa1243870:CDS 40.0%
AATTAGGACTTAGGAGATGG+TGG + chr8_2:30816495-30816514 Msa1243870:three_prime_UTR 40.0%
GTCAAGTAATATGGGACGGA+GGG - chr8_2:30814798-30814817 None:intergenic 45.0%
CATACGTGACAGAGTCAACT+AGG - chr8_2:30814820-30814839 None:intergenic 45.0%
GGTCAAGTAATATGAGACGG+AGG + chr8_2:30815026-30815045 Msa1243870:intron 45.0%
! AATGAGATTTTCCGACACGG+TGG - chr8_2:30815533-30815552 None:intergenic 45.0%
! CGGAATGAGATTTTCCGACA+CGG - chr8_2:30815536-30815555 None:intergenic 45.0%
CGGAGGAAATCGGTTATGAA+AGG - chr8_2:30815580-30815599 None:intergenic 45.0%
! GAAGATGGTGTCTGGTTTCA+CGG - chr8_2:30815617-30815636 None:intergenic 45.0%
TTGTAAGCGAAGATGGTGTC+TGG - chr8_2:30815625-30815644 None:intergenic 45.0%
!! TGTCGATGTCGGTGTTTTGA+TGG - chr8_2:30815741-30815760 None:intergenic 45.0%
AACAACAACAACAACGGCGA+CGG + chr8_2:30816142-30816161 Msa1243870:CDS 45.0%
ATGAATATTGTGGGTGGCGT+AGG + chr8_2:30816236-30816255 Msa1243870:CDS 45.0%
TGAATATTGTGGGTGGCGTA+GGG + chr8_2:30816237-30816256 Msa1243870:CDS 45.0%
TTATGCAGAAACTGTGGGGA+AGG + chr8_2:30816325-30816344 Msa1243870:CDS 45.0%
GTCAAGTAATATGGGACGGA+GGG - chr8_2:30814798-30814817 None:intergenic 45.0%
CATACGTGACAGAGTCAACT+AGG - chr8_2:30814820-30814839 None:intergenic 45.0%
GGTCAAGTAATATGAGACGG+AGG + chr8_2:30815026-30815045 Msa1243870:intron 45.0%
! AATGAGATTTTCCGACACGG+TGG - chr8_2:30815533-30815552 None:intergenic 45.0%
! CGGAATGAGATTTTCCGACA+CGG - chr8_2:30815536-30815555 None:intergenic 45.0%
CGGAGGAAATCGGTTATGAA+AGG - chr8_2:30815580-30815599 None:intergenic 45.0%
! GAAGATGGTGTCTGGTTTCA+CGG - chr8_2:30815617-30815636 None:intergenic 45.0%
TTGTAAGCGAAGATGGTGTC+TGG - chr8_2:30815625-30815644 None:intergenic 45.0%
!! TGTCGATGTCGGTGTTTTGA+TGG - chr8_2:30815741-30815760 None:intergenic 45.0%
AACAACAACAACAACGGCGA+CGG + chr8_2:30816142-30816161 Msa1243870:CDS 45.0%
ATGAATATTGTGGGTGGCGT+AGG + chr8_2:30816236-30816255 Msa1243870:CDS 45.0%
TGAATATTGTGGGTGGCGTA+GGG + chr8_2:30816237-30816256 Msa1243870:CDS 45.0%
TTATGCAGAAACTGTGGGGA+AGG + chr8_2:30816325-30816344 Msa1243870:CDS 45.0%
GGTCAAGTAATATGGGACGG+AGG - chr8_2:30814799-30814818 None:intergenic 50.0%
!! GTTGAGATGGTGAGCATCGA+CGG - chr8_2:30815281-30815300 None:intergenic 50.0%
TTGTTCGACGGAGATTGCGA+CGG - chr8_2:30815556-30815575 None:intergenic 50.0%
!!! CGGTGGATGTTTTTTGACGG+AGG - chr8_2:30815597-30815616 None:intergenic 50.0%
!!! CGATGTCGGTGTTTTGATGG+TGG - chr8_2:30815738-30815757 None:intergenic 50.0%
AACGGCGACGGTGAATATAG+CGG + chr8_2:30816154-30816173 Msa1243870:CDS 50.0%
GTGGCGTAGGGTAGTAATGA+CGG + chr8_2:30816249-30816268 Msa1243870:CDS 50.0%
AGTAATGACGGCGCAGGATA+AGG + chr8_2:30816261-30816280 Msa1243870:CDS 50.0%
GTGTTCAATGTGTGGGGCTA+TGG + chr8_2:30816390-30816409 Msa1243870:CDS 50.0%
GGTCAAGTAATATGGGACGG+AGG - chr8_2:30814799-30814818 None:intergenic 50.0%
!! GTTGAGATGGTGAGCATCGA+CGG - chr8_2:30815281-30815300 None:intergenic 50.0%
TTGTTCGACGGAGATTGCGA+CGG - chr8_2:30815556-30815575 None:intergenic 50.0%
!!! CGGTGGATGTTTTTTGACGG+AGG - chr8_2:30815597-30815616 None:intergenic 50.0%
!!! CGATGTCGGTGTTTTGATGG+TGG - chr8_2:30815738-30815757 None:intergenic 50.0%
AACGGCGACGGTGAATATAG+CGG + chr8_2:30816154-30816173 Msa1243870:CDS 50.0%
GTGGCGTAGGGTAGTAATGA+CGG + chr8_2:30816249-30816268 Msa1243870:CDS 50.0%
AGTAATGACGGCGCAGGATA+AGG + chr8_2:30816261-30816280 Msa1243870:CDS 50.0%
GTGTTCAATGTGTGGGGCTA+TGG + chr8_2:30816390-30816409 Msa1243870:CDS 50.0%
ACGGTGGTTGTGCCTGAAAG+TGG - chr8_2:30815517-30815536 None:intergenic 55.0%
TTCAGGCACAACCACCGTGT+CGG + chr8_2:30815519-30815538 Msa1243870:CDS 55.0%
! GATGGTGTCTGGTTTCACGG+TGG - chr8_2:30815614-30815633 None:intergenic 55.0%
GACGGTGAATATAGCGGTGG+CGG + chr8_2:30816160-30816179 Msa1243870:CDS 55.0%
! TGGCGGAGATTTTGCCGTTG+CGG + chr8_2:30816177-30816196 Msa1243870:CDS 55.0%
TAGGGTAGTAATGACGGCGC+AGG + chr8_2:30816255-30816274 Msa1243870:CDS 55.0%
ACGGCGCAGGATAAGGATGA+AGG + chr8_2:30816268-30816287 Msa1243870:CDS 55.0%
ACGGTGGTTGTGCCTGAAAG+TGG - chr8_2:30815517-30815536 None:intergenic 55.0%
TTCAGGCACAACCACCGTGT+CGG + chr8_2:30815519-30815538 Msa1243870:CDS 55.0%
! GATGGTGTCTGGTTTCACGG+TGG - chr8_2:30815614-30815633 None:intergenic 55.0%
GACGGTGAATATAGCGGTGG+CGG + chr8_2:30816160-30816179 Msa1243870:CDS 55.0%
! TGGCGGAGATTTTGCCGTTG+CGG + chr8_2:30816177-30816196 Msa1243870:CDS 55.0%
TAGGGTAGTAATGACGGCGC+AGG + chr8_2:30816255-30816274 Msa1243870:CDS 55.0%
ACGGCGCAGGATAAGGATGA+AGG + chr8_2:30816268-30816287 Msa1243870:CDS 55.0%
GGCGACGGTGAATATAGCGG+TGG + chr8_2:30816157-30816176 Msa1243870:CDS 60.0%
! CGGAGATTTTGCCGTTGCGG+CGG + chr8_2:30816180-30816199 Msa1243870:CDS 60.0%
! AGATTTTGCCGTTGCGGCGG+AGG + chr8_2:30816183-30816202 Msa1243870:CDS 60.0%
GGCGACGGTGAATATAGCGG+TGG + chr8_2:30816157-30816176 Msa1243870:CDS 60.0%
! CGGAGATTTTGCCGTTGCGG+CGG + chr8_2:30816180-30816199 Msa1243870:CDS 60.0%
! AGATTTTGCCGTTGCGGCGG+AGG + chr8_2:30816183-30816202 Msa1243870:CDS 60.0%
! TTTTGCCGTTGCGGCGGAGG+CGG + chr8_2:30816186-30816205 Msa1243870:CDS 65.0%
! TTTTGCCGTTGCGGCGGAGG+CGG + chr8_2:30816186-30816205 Msa1243870:CDS 65.0%
ATCCTCCGCCTCCGCCGCAA+CGG - chr8_2:30816194-30816213 None:intergenic 70.0%
ATCCTCCGCCTCCGCCGCAA+CGG - chr8_2:30816194-30816213 None:intergenic 70.0%
! TGCCGTTGCGGCGGAGGCGG+AGG + chr8_2:30816189-30816208 Msa1243870:CDS 80.0%
! TGCCGTTGCGGCGGAGGCGG+AGG + chr8_2:30816189-30816208 Msa1243870:CDS 80.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 30814752 30816675 30814752 ID=Msa1243870;Name=Msa1243870
chr8_2 mRNA 30814752 30816675 30814752 ID=Msa1243870-mRNA-1;Parent=Msa1243870;Name=Msa1243870-mRNA-1;_AED=0.00;_eAED=0.00;_QI=264|1|1|1|0.66|0.5|4|201|332
chr8_2 exon 30814752 30814789 30814752 ID=Msa1243870-mRNA-1:exon:10291;Parent=Msa1243870-mRNA-1
chr8_2 exon 30815048 30815329 30815048 ID=Msa1243870-mRNA-1:exon:10292;Parent=Msa1243870-mRNA-1
chr8_2 exon 30815438 30815777 30815438 ID=Msa1243870-mRNA-1:exon:10293;Parent=Msa1243870-mRNA-1
chr8_2 exon 30815872 30816675 30815872 ID=Msa1243870-mRNA-1:exon:10294;Parent=Msa1243870-mRNA-1
chr8_2 five_prime_UTR 30814752 30814789 30814752 ID=Msa1243870-mRNA-1:five_prime_utr;Parent=Msa1243870-mRNA-1
chr8_2 five_prime_UTR 30815048 30815273 30815048 ID=Msa1243870-mRNA-1:five_prime_utr;Parent=Msa1243870-mRNA-1
chr8_2 CDS 30815274 30815329 30815274 ID=Msa1243870-mRNA-1:cds;Parent=Msa1243870-mRNA-1
chr8_2 CDS 30815438 30815777 30815438 ID=Msa1243870-mRNA-1:cds;Parent=Msa1243870-mRNA-1
chr8_2 CDS 30815872 30816474 30815872 ID=Msa1243870-mRNA-1:cds;Parent=Msa1243870-mRNA-1
chr8_2 three_prime_UTR 30816475 30816675 30816475 ID=Msa1243870-mRNA-1:three_prime_utr;Parent=Msa1243870-mRNA-1
Gene Sequence

>Msa1243870

ATGACCGTCGATGCTCACCATCTCAACCTTTTTCCTTCTCAACTTCAACCCAATAGAGACATGATGATGATGATGATGAACACGACCGACACAAATTATACAAACATGTACAACAACTACTCATCACTGTTACCACTTTCAGGCACAACCACCGTGTCGGAAAATCTCATTCCGTCGCAATCTCCGTCGAACAACCCTTTCATAACCGATTTCCTCCGTCAAAAAACATCCACCGTGAAACCAGACACCATCTTCGCTTACAACAACGTTGTCTCGTTCCCACAAAAACGTTCTAGAGATTCTATCAATAACAATAACTACCCTTTCATCAGTGAAGATTTTTCTCATTACATCCACCATCAAAACACCGACATCGACAACTTCATTTCTCAACACACGGAGAAGTTTAGAGTGGAATTAGAAGAGAAAAGAAAGAGAGAAACAATGATGATAATGGAAGCAATAGAAAACGAAGTGATGAAGAAAATGAAAGCAAAAGAAGAAGAAATACAAAAGATTGAAAGAATGAACATGATTCTTGAAGAAAAAGTGAAAACACTATGCATGGAGAATCAAATCTGGAGAGAGTTAGCACAAAACAATGAAGCAACAGCAAATGCTCTTAGAAACAATCTACAACAAATCCTTATGCAACAAATGGAAAACAACAACAACAACAACGGCGACGGTGAATATAGCGGTGGCGGAGATTTTGCCGTTGCGGCGGAGGCGGAGGATGCTGAGTCCTGTTGTAGTAATGATGAATATTGTGGGTGGCGTAGGGTAGTAATGACGGCGCAGGATAAGGATGAAGGTACTAGTAGTGGTAGAGTGATGAATAACAATAGATTATGCAGAAACTGTGGGGAAGGTGAATCTTGTGTATTGATCATGCCTTGTAGACACTTATGTTTGTGTTCAATGTGTGGGGCTATGGTTCTTACTTGTCCTATATGTGATTCTGTTAAATCTGCTACTCTTAATGTTAATATTGATTAA

Protein sequence

>Msa1243870

MTVDAHHLNLFPSQLQPNRDMMMMMMNTTDTNYTNMYNNYSSLLPLSGTTTVSENLIPSQSPSNNPFITDFLRQKTSTVKPDTIFAYNNVVSFPQKRSRDSINNNNYPFISEDFSHYIHHQNTDIDNFISQHTEKFRVELEEKRKRETMMIMEAIENEVMKKMKAKEEEIQKIERMNMILEEKVKTLCMENQIWRELAQNNEATANALRNNLQQILMQQMENNNNNNGDGEYSGGGDFAVAAEAEDAESCCSNDEYCGWRRVVMTAQDKDEGTSSGRVMNNNRLCRNCGEGESCVLIMPCRHLCLCSMCGAMVLTCPICDSVKSATLNVNID*