Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829560 | KEH36513.1 | 93.103 | 261 | 14 | 2 | 1 | 260 | 1 | 258 | 1.32e-163 | 463 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829560 | A0A072V590 | 93.103 | 261 | 14 | 2 | 1 | 260 | 1 | 258 | 6.31e-164 | 463 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0792510 | Msa0829560 | 0.801318 | 9.529729e-49 | -8.615850e-47 |
| Msa0829560 | Msa0944770 | 0.813597 | 2.361217e-51 | -8.615850e-47 |
| Msa0829560 | Msa1363890 | 0.800766 | 1.235430e-48 | -8.615850e-47 |
| Msa0829560 | Msa1374440 | 0.805413 | 1.350968e-49 | -8.615850e-47 |
| Msa0829560 | Msa1423450 | 0.818672 | 1.734473e-52 | -8.615850e-47 |
| Msa0140910 | Msa0829560 | 0.822541 | 2.241301e-53 | -8.615850e-47 |
| Msa0185480 | Msa0829560 | 0.803645 | 3.158378e-49 | -8.615850e-47 |
| Msa0191190 | Msa0829560 | 0.960385 | 1.693894e-118 | -8.615850e-47 |
| Msa0211010 | Msa0829560 | 0.811779 | 5.902634e-51 | -8.615850e-47 |
| Msa0217400 | Msa0829560 | 0.823897 | 1.081253e-53 | -8.615850e-47 |
| Msa0371540 | Msa0829560 | 0.826055 | 3.346603e-54 | -8.615850e-47 |
| Msa0419970 | Msa0829560 | 0.805857 | 1.090002e-49 | -8.615850e-47 |
| Msa0466060 | Msa0829560 | 0.823229 | 1.549954e-53 | -8.615850e-47 |
| Msa0290650 | Msa0829560 | 0.801412 | 9.113561e-49 | -8.615850e-47 |
| Msa0296560 | Msa0829560 | 0.801014 | 1.099439e-48 | -8.615850e-47 |
| Msa0311920 | Msa0829560 | 0.955990 | 8.437323e-114 | -8.615850e-47 |
| Msa0323620 | Msa0829560 | 0.805445 | 1.330234e-49 | -8.615850e-47 |
| Msa0335040 | Msa0829560 | 0.810961 | 8.881764e-51 | -8.615850e-47 |
| Msa0484690 | Msa0829560 | 0.802991 | 4.313453e-49 | -8.615850e-47 |
| Msa0517340 | Msa0829560 | 0.823522 | 1.323559e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829560 | MtrunA17_Chr2g0281121 | 93.103 | 261 | 14 | 2 | 1 | 260 | 14 | 271 | 2.67e-167 | 463 |
| Msa0829560 | MtrunA17_Chr4g0048371 | 53.532 | 269 | 92 | 10 | 1 | 249 | 24 | 279 | 1.05e-47 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829560 | AT4G21500.1 | 34.568 | 243 | 101 | 7 | 17 | 240 | 12 | 215 | 1.09e-17 | 79.7 |
Find 41 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAAGTTGAAATCTAAAA+TGG | 0.203889 | 5_4:+2574167 | Msa0829560:CDS |
| TCGAGACCCACTTGAAAATT+TGG | 0.233268 | 5_4:-2574134 | None:intergenic |
| CACCGGAGAATATGAATTTC+CGG | 0.299531 | 5_4:+2574406 | Msa0829560:CDS |
| GAACTATCTGAATCAGATTC+AGG | 0.336496 | 5_4:-2574345 | None:intergenic |
| TTTCTTCACTCTTAGATCTC+TGG | 0.338598 | 5_4:-2574014 | None:intergenic |
| TTCATCGGAGAATGAGTTTC+CGG | 0.350752 | 5_4:+2574365 | Msa0829560:CDS |
| AGTTTCCGGCGATGGAGAAC+TGG | 0.362497 | 5_4:+2574379 | Msa0829560:CDS |
| GGCTTTAAGAGGAAGGCTTT+GGG | 0.375043 | 5_4:+2574474 | Msa0829560:CDS |
| TGGCTTTAAGAGGAAGGCTT+TGG | 0.384066 | 5_4:+2574473 | Msa0829560:CDS |
| GAGATCTAAGAGTGAAGAAA+AGG | 0.411423 | 5_4:+2574017 | Msa0829560:CDS |
| TTAATTGAGATAGCTCTTGA+TGG | 0.421762 | 5_4:+2574453 | Msa0829560:CDS |
| TCTAATGAGAATTGTGTTGC+TGG | 0.422953 | 5_4:+2574288 | Msa0829560:CDS |
| ACATTTCTCCGACGAAGCGC+AGG | 0.439702 | 5_4:+2574532 | Msa0829560:CDS |
| TAGCTCTTGATGGCTTTAAG+AGG | 0.465176 | 5_4:+2574463 | Msa0829560:CDS |
| TCACCAGTTCTAATTCTCAC+TGG | 0.478806 | 5_4:+2573955 | Msa0829560:CDS |
| GGAGAATGAGTTTCCGGCGA+TGG | 0.484875 | 5_4:+2574371 | Msa0829560:CDS |
| GAAAAGTTGAAATCTAAAAT+GGG | 0.488091 | 5_4:+2574168 | Msa0829560:CDS |
| CTCTATCTTCTTCATCCCAC+CGG | 0.498324 | 5_4:-2574425 | None:intergenic |
| GGCTTTGGGATTTCAGTTTG+AGG | 0.516822 | 5_4:+2574488 | Msa0829560:CDS |
| CACCGGAAATTCATATTCTC+CGG | 0.520892 | 5_4:-2574408 | None:intergenic |
| ATGGAACGTGAAAGCGCCGT+TGG | 0.537116 | 5_4:+2574230 | Msa0829560:CDS |
| GAAAACTCCCTGCGCTTCGT+CGG | 0.545300 | 5_4:-2574540 | None:intergenic |
| TCTTGATGGCTTTAAGAGGA+AGG | 0.545888 | 5_4:+2574467 | Msa0829560:CDS |
| GGGATGAAGAAGATAGAGAA+GGG | 0.548429 | 5_4:+2574430 | Msa0829560:CDS |
| GATGGAGAACTGGGACTCAC+CGG | 0.552428 | 5_4:+2574389 | Msa0829560:CDS |
| ACACCAGTGAGAATTAGAAC+TGG | 0.561591 | 5_4:-2573958 | None:intergenic |
| GAGTCCCAGTTCTCCATCGC+CGG | 0.564533 | 5_4:-2574384 | None:intergenic |
| GATGAGAATCAAGGTGCAGA+AGG | 0.566008 | 5_4:-2573899 | None:intergenic |
| TCTTCATATATAACTTCCAA+CGG | 0.567961 | 5_4:-2574246 | None:intergenic |
| AGGAAAATAGATGAGAATCA+AGG | 0.575079 | 5_4:-2573908 | None:intergenic |
| GTTTCCGGCGATGGAGAACT+GGG | 0.578488 | 5_4:+2574380 | Msa0829560:CDS |
| GGAAAACACCTCCTCCTCGC+CGG | 0.581509 | 5_4:-2574562 | None:intergenic |
| TTAATTCCAACTCAAATCAC+CGG | 0.596284 | 5_4:-2574583 | None:intergenic |
| CATTTCTCCGACGAAGCGCA+GGG | 0.607667 | 5_4:+2574533 | Msa0829560:CDS |
| TGGGATGAAGAAGATAGAGA+AGG | 0.615054 | 5_4:+2574429 | Msa0829560:CDS |
| CGGAGAATATGAATTTCCGG+TGG | 0.615835 | 5_4:+2574409 | Msa0829560:CDS |
| ATCTGATTCAGATAGTTCAT+CGG | 0.620524 | 5_4:+2574350 | Msa0829560:CDS |
| ATATGAAGATGAAGAAACAG+AGG | 0.620651 | 5_4:+2574260 | Msa0829560:CDS |
| GGGGAAAACAGAGGAAAATG+TGG | 0.620751 | 5_4:+2574095 | Msa0829560:CDS |
| GGAGAATATGAATTTCCGGT+GGG | 0.667099 | 5_4:+2574410 | Msa0829560:CDS |
| GTAATAATGCATGAAAACAG+AGG | 0.676002 | 5_4:-2573877 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAGATTTCAACTTTTCTT+CGG | - | chr5_4:2574166-2574185 | None:intergenic | 20.0% |
| !! | AGAAAAGTTGAAATCTAAAA+TGG | + | chr5_4:2574167-2574186 | Msa0829560:CDS | 20.0% |
| !!! | GAAAAGTTGAAATCTAAAAT+GGG | + | chr5_4:2574168-2574187 | Msa0829560:CDS | 20.0% |
| !!! | TTTAGATTTCAACTTTTCTT+CGG | - | chr5_4:2574166-2574185 | None:intergenic | 20.0% |
| !! | AGAAAAGTTGAAATCTAAAA+TGG | + | chr5_4:2574167-2574186 | Msa0829560:CDS | 20.0% |
| !!! | GAAAAGTTGAAATCTAAAAT+GGG | + | chr5_4:2574168-2574187 | Msa0829560:CDS | 20.0% |
| !! | ACTATTTTGCAGAATGAATA+AGG | - | chr5_4:2573931-2573950 | None:intergenic | 25.0% |
| !! | TTGATTTTTGTACTTCGTTT+TGG | + | chr5_4:2573985-2574004 | Msa0829560:CDS | 25.0% |
| ! | AGTGAAGAAAAGGAAAAATT+TGG | + | chr5_4:2574027-2574046 | Msa0829560:CDS | 25.0% |
| ! | TCTTCATATATAACTTCCAA+CGG | - | chr5_4:2574249-2574268 | None:intergenic | 25.0% |
| !! | ACTATTTTGCAGAATGAATA+AGG | - | chr5_4:2573931-2573950 | None:intergenic | 25.0% |
| !! | TTGATTTTTGTACTTCGTTT+TGG | + | chr5_4:2573985-2574004 | Msa0829560:CDS | 25.0% |
| ! | AGTGAAGAAAAGGAAAAATT+TGG | + | chr5_4:2574027-2574046 | Msa0829560:CDS | 25.0% |
| ! | TCTTCATATATAACTTCCAA+CGG | - | chr5_4:2574249-2574268 | None:intergenic | 25.0% |
| GTAATAATGCATGAAAACAG+AGG | - | chr5_4:2573880-2573899 | None:intergenic | 30.0% | |
| AGGAAAATAGATGAGAATCA+AGG | - | chr5_4:2573911-2573930 | None:intergenic | 30.0% | |
| ! | TTCATCTCTGTTTTCTTCAT+TGG | - | chr5_4:2574070-2574089 | None:intergenic | 30.0% |
| AGAAAACAGAGATGAAAAAC+AGG | + | chr5_4:2574074-2574093 | Msa0829560:CDS | 30.0% | |
| GAAAACAGAGATGAAAAACA+GGG | + | chr5_4:2574075-2574094 | Msa0829560:CDS | 30.0% | |
| AAAACAGAGATGAAAAACAG+GGG | + | chr5_4:2574076-2574095 | Msa0829560:CDS | 30.0% | |
| !!! | TCTTGACCAAATTTTCAAGT+GGG | + | chr5_4:2574128-2574147 | Msa0829560:CDS | 30.0% |
| ! | TTGATGAGTCTTTTGTTGAA+TGG | + | chr5_4:2574211-2574230 | Msa0829560:CDS | 30.0% |
| ATATGAAGATGAAGAAACAG+AGG | + | chr5_4:2574260-2574279 | Msa0829560:CDS | 30.0% | |
| ATCTGATTCAGATAGTTCAT+CGG | + | chr5_4:2574350-2574369 | Msa0829560:CDS | 30.0% | |
| TTAATTGAGATAGCTCTTGA+TGG | + | chr5_4:2574453-2574472 | Msa0829560:CDS | 30.0% | |
| TTAATTCCAACTCAAATCAC+CGG | - | chr5_4:2574586-2574605 | None:intergenic | 30.0% | |
| GTAATAATGCATGAAAACAG+AGG | - | chr5_4:2573880-2573899 | None:intergenic | 30.0% | |
| AGGAAAATAGATGAGAATCA+AGG | - | chr5_4:2573911-2573930 | None:intergenic | 30.0% | |
| ! | TTCATCTCTGTTTTCTTCAT+TGG | - | chr5_4:2574070-2574089 | None:intergenic | 30.0% |
| AGAAAACAGAGATGAAAAAC+AGG | + | chr5_4:2574074-2574093 | Msa0829560:CDS | 30.0% | |
| GAAAACAGAGATGAAAAACA+GGG | + | chr5_4:2574075-2574094 | Msa0829560:CDS | 30.0% | |
| AAAACAGAGATGAAAAACAG+GGG | + | chr5_4:2574076-2574095 | Msa0829560:CDS | 30.0% | |
| !!! | TCTTGACCAAATTTTCAAGT+GGG | + | chr5_4:2574128-2574147 | Msa0829560:CDS | 30.0% |
| ! | TTGATGAGTCTTTTGTTGAA+TGG | + | chr5_4:2574211-2574230 | Msa0829560:CDS | 30.0% |
| ATATGAAGATGAAGAAACAG+AGG | + | chr5_4:2574260-2574279 | Msa0829560:CDS | 30.0% | |
| ATCTGATTCAGATAGTTCAT+CGG | + | chr5_4:2574350-2574369 | Msa0829560:CDS | 30.0% | |
| TTAATTGAGATAGCTCTTGA+TGG | + | chr5_4:2574453-2574472 | Msa0829560:CDS | 30.0% | |
| TTAATTCCAACTCAAATCAC+CGG | - | chr5_4:2574586-2574605 | None:intergenic | 30.0% | |
| TTTCTTCACTCTTAGATCTC+TGG | - | chr5_4:2574017-2574036 | None:intergenic | 35.0% | |
| GAGATCTAAGAGTGAAGAAA+AGG | + | chr5_4:2574017-2574036 | Msa0829560:CDS | 35.0% | |
| !! | CTCTTGACCAAATTTTCAAG+TGG | + | chr5_4:2574127-2574146 | Msa0829560:CDS | 35.0% |
| TCTAATGAGAATTGTGTTGC+TGG | + | chr5_4:2574288-2574307 | Msa0829560:CDS | 35.0% | |
| GAACTATCTGAATCAGATTC+AGG | - | chr5_4:2574348-2574367 | None:intergenic | 35.0% | |
| TTTCTTCACTCTTAGATCTC+TGG | - | chr5_4:2574017-2574036 | None:intergenic | 35.0% | |
| GAGATCTAAGAGTGAAGAAA+AGG | + | chr5_4:2574017-2574036 | Msa0829560:CDS | 35.0% | |
| !! | CTCTTGACCAAATTTTCAAG+TGG | + | chr5_4:2574127-2574146 | Msa0829560:CDS | 35.0% |
| TCTAATGAGAATTGTGTTGC+TGG | + | chr5_4:2574288-2574307 | Msa0829560:CDS | 35.0% | |
| GAACTATCTGAATCAGATTC+AGG | - | chr5_4:2574348-2574367 | None:intergenic | 35.0% | |
| ! | TCACCAGTTCTAATTCTCAC+TGG | + | chr5_4:2573955-2573974 | Msa0829560:CDS | 40.0% |
| ACACCAGTGAGAATTAGAAC+TGG | - | chr5_4:2573961-2573980 | None:intergenic | 40.0% | |
| TGAAAAACAGGGGAAAACAG+AGG | + | chr5_4:2574086-2574105 | Msa0829560:CDS | 40.0% | |
| TCGAGACCCACTTGAAAATT+TGG | - | chr5_4:2574137-2574156 | None:intergenic | 40.0% | |
| TTCATCGGAGAATGAGTTTC+CGG | + | chr5_4:2574365-2574384 | Msa0829560:CDS | 40.0% | |
| CACCGGAGAATATGAATTTC+CGG | + | chr5_4:2574406-2574425 | Msa0829560:CDS | 40.0% | |
| CACCGGAAATTCATATTCTC+CGG | - | chr5_4:2574411-2574430 | None:intergenic | 40.0% | |
| GGAGAATATGAATTTCCGGT+GGG | + | chr5_4:2574410-2574429 | Msa0829560:CDS | 40.0% | |
| TGGGATGAAGAAGATAGAGA+AGG | + | chr5_4:2574429-2574448 | Msa0829560:CDS | 40.0% | |
| GGGATGAAGAAGATAGAGAA+GGG | + | chr5_4:2574430-2574449 | Msa0829560:CDS | 40.0% | |
| !! | TAGCTCTTGATGGCTTTAAG+AGG | + | chr5_4:2574463-2574482 | Msa0829560:CDS | 40.0% |
| !! | TCTTGATGGCTTTAAGAGGA+AGG | + | chr5_4:2574467-2574486 | Msa0829560:CDS | 40.0% |
| ! | TGTTTTCCGGTGATTTGAGT+TGG | + | chr5_4:2574577-2574596 | Msa0829560:CDS | 40.0% |
| ! | TCACCAGTTCTAATTCTCAC+TGG | + | chr5_4:2573955-2573974 | Msa0829560:CDS | 40.0% |
| ACACCAGTGAGAATTAGAAC+TGG | - | chr5_4:2573961-2573980 | None:intergenic | 40.0% | |
| TGAAAAACAGGGGAAAACAG+AGG | + | chr5_4:2574086-2574105 | Msa0829560:CDS | 40.0% | |
| TCGAGACCCACTTGAAAATT+TGG | - | chr5_4:2574137-2574156 | None:intergenic | 40.0% | |
| TTCATCGGAGAATGAGTTTC+CGG | + | chr5_4:2574365-2574384 | Msa0829560:CDS | 40.0% | |
| CACCGGAGAATATGAATTTC+CGG | + | chr5_4:2574406-2574425 | Msa0829560:CDS | 40.0% | |
| CACCGGAAATTCATATTCTC+CGG | - | chr5_4:2574411-2574430 | None:intergenic | 40.0% | |
| GGAGAATATGAATTTCCGGT+GGG | + | chr5_4:2574410-2574429 | Msa0829560:CDS | 40.0% | |
| TGGGATGAAGAAGATAGAGA+AGG | + | chr5_4:2574429-2574448 | Msa0829560:CDS | 40.0% | |
| GGGATGAAGAAGATAGAGAA+GGG | + | chr5_4:2574430-2574449 | Msa0829560:CDS | 40.0% | |
| !! | TAGCTCTTGATGGCTTTAAG+AGG | + | chr5_4:2574463-2574482 | Msa0829560:CDS | 40.0% |
| !! | TCTTGATGGCTTTAAGAGGA+AGG | + | chr5_4:2574467-2574486 | Msa0829560:CDS | 40.0% |
| ! | TGTTTTCCGGTGATTTGAGT+TGG | + | chr5_4:2574577-2574596 | Msa0829560:CDS | 40.0% |
| GATGAGAATCAAGGTGCAGA+AGG | - | chr5_4:2573902-2573921 | None:intergenic | 45.0% | |
| GGGGAAAACAGAGGAAAATG+TGG | + | chr5_4:2574095-2574114 | Msa0829560:CDS | 45.0% | |
| CGGAGAATATGAATTTCCGG+TGG | + | chr5_4:2574409-2574428 | Msa0829560:CDS | 45.0% | |
| CTCTATCTTCTTCATCCCAC+CGG | - | chr5_4:2574428-2574447 | None:intergenic | 45.0% | |
| !! | TGGCTTTAAGAGGAAGGCTT+TGG | + | chr5_4:2574473-2574492 | Msa0829560:CDS | 45.0% |
| !! | GGCTTTAAGAGGAAGGCTTT+GGG | + | chr5_4:2574474-2574493 | Msa0829560:CDS | 45.0% |
| !! | GGCTTTGGGATTTCAGTTTG+AGG | + | chr5_4:2574488-2574507 | Msa0829560:CDS | 45.0% |
| GATGAGAATCAAGGTGCAGA+AGG | - | chr5_4:2573902-2573921 | None:intergenic | 45.0% | |
| GGGGAAAACAGAGGAAAATG+TGG | + | chr5_4:2574095-2574114 | Msa0829560:CDS | 45.0% | |
| CGGAGAATATGAATTTCCGG+TGG | + | chr5_4:2574409-2574428 | Msa0829560:CDS | 45.0% | |
| CTCTATCTTCTTCATCCCAC+CGG | - | chr5_4:2574428-2574447 | None:intergenic | 45.0% | |
| !! | TGGCTTTAAGAGGAAGGCTT+TGG | + | chr5_4:2574473-2574492 | Msa0829560:CDS | 45.0% |
| !! | GGCTTTAAGAGGAAGGCTTT+GGG | + | chr5_4:2574474-2574493 | Msa0829560:CDS | 45.0% |
| !! | GGCTTTGGGATTTCAGTTTG+AGG | + | chr5_4:2574488-2574507 | Msa0829560:CDS | 45.0% |
| !! | ATGGAACGTGAAAGCGCCGT+TGG | + | chr5_4:2574230-2574249 | Msa0829560:CDS | 55.0% |
| GGAGAATGAGTTTCCGGCGA+TGG | + | chr5_4:2574371-2574390 | Msa0829560:CDS | 55.0% | |
| AGTTTCCGGCGATGGAGAAC+TGG | + | chr5_4:2574379-2574398 | Msa0829560:CDS | 55.0% | |
| GTTTCCGGCGATGGAGAACT+GGG | + | chr5_4:2574380-2574399 | Msa0829560:CDS | 55.0% | |
| GATGGAGAACTGGGACTCAC+CGG | + | chr5_4:2574389-2574408 | Msa0829560:CDS | 55.0% | |
| ACATTTCTCCGACGAAGCGC+AGG | + | chr5_4:2574532-2574551 | Msa0829560:CDS | 55.0% | |
| CATTTCTCCGACGAAGCGCA+GGG | + | chr5_4:2574533-2574552 | Msa0829560:CDS | 55.0% | |
| GAAAACTCCCTGCGCTTCGT+CGG | - | chr5_4:2574543-2574562 | None:intergenic | 55.0% | |
| ! | ACGAAGCGCAGGGAGTTTTC+CGG | + | chr5_4:2574543-2574562 | Msa0829560:CDS | 55.0% |
| !! | ATGGAACGTGAAAGCGCCGT+TGG | + | chr5_4:2574230-2574249 | Msa0829560:CDS | 55.0% |
| GGAGAATGAGTTTCCGGCGA+TGG | + | chr5_4:2574371-2574390 | Msa0829560:CDS | 55.0% | |
| AGTTTCCGGCGATGGAGAAC+TGG | + | chr5_4:2574379-2574398 | Msa0829560:CDS | 55.0% | |
| GTTTCCGGCGATGGAGAACT+GGG | + | chr5_4:2574380-2574399 | Msa0829560:CDS | 55.0% | |
| GATGGAGAACTGGGACTCAC+CGG | + | chr5_4:2574389-2574408 | Msa0829560:CDS | 55.0% | |
| ACATTTCTCCGACGAAGCGC+AGG | + | chr5_4:2574532-2574551 | Msa0829560:CDS | 55.0% | |
| CATTTCTCCGACGAAGCGCA+GGG | + | chr5_4:2574533-2574552 | Msa0829560:CDS | 55.0% | |
| GAAAACTCCCTGCGCTTCGT+CGG | - | chr5_4:2574543-2574562 | None:intergenic | 55.0% | |
| ! | ACGAAGCGCAGGGAGTTTTC+CGG | + | chr5_4:2574543-2574562 | Msa0829560:CDS | 55.0% |
| GAGTCCCAGTTCTCCATCGC+CGG | - | chr5_4:2574387-2574406 | None:intergenic | 60.0% | |
| GGAAAACACCTCCTCCTCGC+CGG | - | chr5_4:2574565-2574584 | None:intergenic | 60.0% | |
| !!! | GGCGAGGAGGAGGTGTTTTC+CGG | + | chr5_4:2574564-2574583 | Msa0829560:CDS | 60.0% |
| GAGTCCCAGTTCTCCATCGC+CGG | - | chr5_4:2574387-2574406 | None:intergenic | 60.0% | |
| GGAAAACACCTCCTCCTCGC+CGG | - | chr5_4:2574565-2574584 | None:intergenic | 60.0% | |
| !!! | GGCGAGGAGGAGGTGTTTTC+CGG | + | chr5_4:2574564-2574583 | Msa0829560:CDS | 60.0% |
| ! | CAGGGAGTTTTCCGGCGAGG+AGG | + | chr5_4:2574551-2574570 | Msa0829560:CDS | 65.0% |
| ! | GGAGTTTTCCGGCGAGGAGG+AGG | + | chr5_4:2574554-2574573 | Msa0829560:CDS | 65.0% |
| ! | CAGGGAGTTTTCCGGCGAGG+AGG | + | chr5_4:2574551-2574570 | Msa0829560:CDS | 65.0% |
| ! | GGAGTTTTCCGGCGAGGAGG+AGG | + | chr5_4:2574554-2574573 | Msa0829560:CDS | 65.0% |
| ! | GCGCAGGGAGTTTTCCGGCG+AGG | + | chr5_4:2574548-2574567 | Msa0829560:CDS | 70.0% |
| ! | GCGCAGGGAGTTTTCCGGCG+AGG | + | chr5_4:2574548-2574567 | Msa0829560:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 2573823 | 2574605 | 2573823 | ID=Msa0829560;Name=Msa0829560 |
| chr5_4 | mRNA | 2573823 | 2574605 | 2573823 | ID=Msa0829560-mRNA-1;Parent=Msa0829560;Name=Msa0829560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|260 |
| chr5_4 | exon | 2573823 | 2574605 | 2573823 | ID=Msa0829560-mRNA-1:exon:845;Parent=Msa0829560-mRNA-1 |
| chr5_4 | CDS | 2573823 | 2574605 | 2573823 | ID=Msa0829560-mRNA-1:cds;Parent=Msa0829560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
