AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1363890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1363890 MtrunA17_Chr7g0268711 99.020 102 1 0 18 119 1 102 5.60e-73 212
Msa1363890 MtrunA17_Chr1g0195981 78.571 98 21 0 18 115 1 98 1.18e-57 173
Msa1363890 MtrunA17_Chr1g0195991 76.531 98 23 0 18 115 1 98 1.85e-57 172
Msa1363890 MtrunA17_Chr1g0195971 57.447 94 40 0 18 111 1 94 2.21e-37 122
Msa1363890 MtrunA17_Chr2g0286251 55.789 95 42 0 18 112 1 95 2.82e-37 122
Msa1363890 MtrunA17_Chr2g0286271 55.789 95 42 0 18 112 1 95 8.51e-37 120
Msa1363890 MtrunA17_Chr7g0268731 53.684 95 43 1 18 111 1 95 1.60e-32 110
Msa1363890 MtrunA17_Chr7g0224091 50.000 96 47 1 18 112 22 117 2.26e-32 110
Msa1363890 MtrunA17_Chr7g0222541 44.860 107 56 2 7 112 21 125 2.66e-32 110
Msa1363890 MtrunA17_Chr7g0222551 46.392 97 51 1 17 112 29 125 8.83e-32 108
Msa1363890 MtrunA17_Chr7g0268721 52.632 95 44 1 18 111 1 95 1.11e-31 107
Msa1363890 MtrunA17_Chr4g0066791 50.000 96 47 1 18 112 1 96 2.06e-31 107
Msa1363890 MtrunA17_Chr4g0066801 50.000 96 47 1 18 112 1 96 2.06e-31 107
Msa1363890 MtrunA17_Chr4g0066811 50.000 96 47 1 18 112 1 96 2.06e-31 107
Msa1363890 MtrunA17_Chr7g0222491 43.925 107 57 2 7 112 21 125 4.29e-31 107
Msa1363890 MtrunA17_Chr7g0268751 45.263 95 52 0 18 112 1 95 6.01e-26 93.2
Msa1363890 MtrunA17_Chr1g0195951 42.553 94 54 0 18 111 1 94 1.95e-24 89.7
Msa1363890 MtrunA17_Chr1g0195931 44.681 94 52 0 18 111 1 94 8.74e-22 82.8
Msa1363890 MtrunA17_Chr7g0268761 42.553 94 54 0 18 111 1 94 2.40e-21 81.6
Msa1363890 MtrunA17_Chr2g0282951 37.168 113 68 1 3 112 8 120 7.08e-19 76.3
Msa1363890 MtrunA17_Chr2g0303741 38.776 98 56 1 19 112 40 137 1.68e-17 73.2
Msa1363890 MtrunA17_Chr2g0325001 34.375 96 56 2 21 112 41 133 1.69e-16 70.5
Msa1363890 MtrunA17_Chr1g0182971 39.080 87 52 1 26 111 91 177 9.36e-16 69.3
Msa1363890 MtrunA17_Chr4g0040601 33.913 115 71 3 1 112 36 148 1.04e-15 68.6
Msa1363890 MtrunA17_Chr3g0117411 32.979 94 63 0 18 111 18 111 2.24e-13 61.6
Msa1363890 MtrunA17_Chr7g0228311 33.333 96 64 0 16 111 1 96 4.91e-13 60.5
Msa1363890 MtrunA17_Chr3g0117391 32.979 94 63 0 18 111 21 114 2.34e-12 59.3
Msa1363890 MtrunA17_Chr1g0151231 34.737 95 52 2 20 108 48 138 3.21e-12 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1363890 AT2G47880.1 75.758 99 24 0 18 116 1 99 9.70e-55 166
Msa1363890 AT2G30540.1 71.000 100 29 0 18 117 1 100 3.46e-54 165
Msa1363890 AT1G06830.1 74.227 97 25 0 18 114 1 97 1.80e-53 163
Msa1363890 AT3G62960.1 71.569 102 29 0 18 119 1 102 3.62e-53 162
Msa1363890 AT3G62950.1 53.000 100 46 1 18 116 1 100 1.55e-37 123
Msa1363890 AT2G47870.1 53.125 96 44 1 18 112 1 96 4.21e-36 119
Msa1363890 AT3G21460.1 54.737 95 43 0 18 112 1 95 3.20e-35 117
Msa1363890 AT4G15680.1 49.474 95 48 0 18 112 1 95 1.90e-32 110
Msa1363890 AT5G18600.1 50.526 95 47 0 18 112 1 95 2.42e-32 110
Msa1363890 AT4G15670.1 48.421 95 49 0 18 112 1 95 8.13e-32 108
Msa1363890 AT4G15660.1 47.423 97 51 0 18 114 1 97 1.75e-31 107
Msa1363890 AT4G15700.1 48.421 95 49 0 18 112 1 95 2.20e-31 107
Msa1363890 AT4G15690.1 48.421 95 49 0 18 112 1 95 3.92e-31 107
Msa1363890 AT5G14070.1 43.689 103 50 2 18 112 31 133 3.39e-26 95.5
Msa1363890 AT3G62930.1 42.105 95 55 0 18 112 1 95 4.16e-25 91.7
Msa1363890 AT3G02000.1 43.434 99 50 1 20 112 31 129 1.85e-23 88.6
Msa1363890 AT1G03020.1 42.105 95 55 0 18 112 1 95 2.56e-23 87.0
Msa1363890 AT1G28480.1 33.673 98 61 2 19 112 33 130 4.23e-15 67.0
Msa1363890 AT4G33040.1 39.785 93 50 2 20 107 41 132 7.58e-15 66.6
Msa1363890 AT4G28730.1 35.556 90 57 1 19 107 71 160 2.40e-14 65.9
Msa1363890 AT5G40370.1 31.250 96 66 0 16 111 1 96 1.92e-12 59.3
Msa1363890 AT5G11930.1 40.449 89 43 3 20 107 57 136 2.58e-12 60.1
Msa1363890 AT5G20500.1 33.333 93 62 0 19 111 33 125 8.50e-12 58.5
Msa1363890 AT4G28730.2 38.571 70 42 1 19 87 71 140 2.43e-11 57.4
Msa1363890 AT2G20270.1 31.915 94 63 1 19 111 76 169 2.56e-11 58.2

Find 36 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCATTTCCCTTCCTTC+AGG 0.237314 tig0018098:-68482 None:intergenic
CCTGTTCCTGCTGTGTTCAT+TGG 0.272350 tig0018098:+68533 Msa1363890:CDS
TGTTTCAAGAACTTGGGATT+AGG 0.357723 tig0018098:+68432 Msa1363890:CDS
TCTCCATTTCCCTTCCTTCA+GGG 0.366539 tig0018098:-68481 None:intergenic
AACATTCTGTTTCAAGAACT+TGG 0.368312 tig0018098:+68425 Msa1363890:CDS
GTGAAGGGACATAATTTCAT+TGG 0.393227 tig0018098:-68576 None:intergenic
AGACCCTGAAGGAAGGGAAA+TGG 0.401791 tig0018098:+68478 Msa1363890:CDS
GAATCATGATACCTTGTTGC+TGG 0.424030 tig0018098:+68651 Msa1363890:exon
TTGAGGTTGGCATCTGAAAA+AGG 0.425553 tig0018098:+68356 Msa1363890:CDS
TGATTCAATTAGAACGAGAT+TGG 0.435807 tig0018098:-68634 None:intergenic
AGAACTTGGGATTAGGCCTA+TGG 0.436071 tig0018098:+68439 Msa1363890:CDS
GTTCCTGCTGTGTTCATTGG+AGG 0.437740 tig0018098:+68536 Msa1363890:CDS
GAGAAAGCTTTGTTGAGGTT+AGG 0.441107 tig0018098:+68500 Msa1363890:CDS
TTCATTGGAGGGCAACTGAT+GGG 0.446550 tig0018098:+68548 Msa1363890:CDS
CCAATGAACACAGCAGGAAC+AGG 0.496655 tig0018098:-68533 None:intergenic
TTGTTGCTGGAAGAATAAAC+TGG 0.496668 tig0018098:+68664 Msa1363890:three_prime_UTR
GTTCATTGGAGGGCAACTGA+TGG 0.499451 tig0018098:+68547 Msa1363890:CDS
CAATTAGAACGAGATTGGTA+TGG 0.511391 tig0018098:-68629 None:intergenic
ATTGAGTGAGTGAGCCACTT+AGG 0.513977 tig0018098:-68598 None:intergenic
TGATCAATTTCATGAACCAT+AGG 0.516130 tig0018098:-68455 None:intergenic
TTCCTGCTGTGTTCATTGGA+GGG 0.520038 tig0018098:+68537 Msa1363890:CDS
TAACAGTATCATCATCAAGA+TGG 0.522532 tig0018098:+68325 Msa1363890:CDS
ACATTCTGTTTCAAGAACTT+GGG 0.523434 tig0018098:+68426 Msa1363890:CDS
TGCCCTCCAATGAACACAGC+AGG 0.533916 tig0018098:-68539 None:intergenic
TTGATCAAGACCCTGAAGGA+AGG 0.541164 tig0018098:+68471 Msa1363890:CDS
AAGGGACATAATTTCATTGG+TGG 0.541849 tig0018098:-68573 None:intergenic
ATTATGTCCCTTCACCTAAG+TGG 0.557113 tig0018098:+68584 Msa1363890:CDS
TGATCAAGACCCTGAAGGAA+GGG 0.574619 tig0018098:+68472 Msa1363890:CDS
TCATTGGAGGGCAACTGATG+GGG 0.576911 tig0018098:+68549 Msa1363890:CDS
AGTTTATTCTTCCAGCAACA+AGG 0.579317 tig0018098:-68662 None:intergenic
AAATGGAGAAAGCTTTGTTG+AGG 0.591044 tig0018098:+68495 Msa1363890:CDS
TGAGTGAGCCACTTAGGTGA+AGG 0.592997 tig0018098:-68592 None:intergenic
GATGGACAAAGTGTTGAGGT+TGG 0.596621 tig0018098:+68343 Msa1363890:CDS
GAGTGAGCCACTTAGGTGAA+GGG 0.623363 tig0018098:-68591 None:intergenic
TCAAGATGGACAAAGTGTTG+AGG 0.649690 tig0018098:+68339 Msa1363890:CDS
GAAATTGATCAAGACCCTGA+AGG 0.656540 tig0018098:+68467 Msa1363890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAATTACATTAACTTAAT+AGG + tig0018098:67814-67833 Msa1363890:intron 15.0%
!! AGATAGAAAATTATATATGA+TGG - tig0018098:68100-68119 None:intergenic 15.0%
!! GAAAATTACATTAACTTAAT+AGG + tig0018098:67814-67833 Msa1363890:intron 15.0%
!! AGATAGAAAATTATATATGA+TGG - tig0018098:68100-68119 None:intergenic 15.0%
!!! AATTTTCTTAATGTTGAAAG+TGG - tig0018098:67801-67820 None:intergenic 20.0%
!! AAAATTATATATGATGGTTG+AGG - tig0018098:68094-68113 None:intergenic 20.0%
!! ATTTGTTTAGATTATTACCT+TGG - tig0018098:68206-68225 None:intergenic 20.0%
!!! AATTTTCTTAATGTTGAAAG+TGG - tig0018098:67801-67820 None:intergenic 20.0%
!! AAAATTATATATGATGGTTG+AGG - tig0018098:68094-68113 None:intergenic 20.0%
!! ATTTGTTTAGATTATTACCT+TGG - tig0018098:68206-68225 None:intergenic 20.0%
! ATGTTCTACACAAATAGTTA+TGG + tig0018098:67878-67897 Msa1363890:intron 25.0%
! TTTATTCGATATAGCAAGTT+GGG - tig0018098:67966-67985 None:intergenic 25.0%
!! TTTTATTCGATATAGCAAGT+TGG - tig0018098:67967-67986 None:intergenic 25.0%
! GTATTTATAGGAACTAACTT+GGG - tig0018098:68040-68059 None:intergenic 25.0%
! AGTATTTATAGGAACTAACT+TGG - tig0018098:68041-68060 None:intergenic 25.0%
!!! TGGTAAATGAGAGTATTTAT+AGG - tig0018098:68052-68071 None:intergenic 25.0%
!!! GTTATTTTGAAATGAAATGG+TGG - tig0018098:68072-68091 None:intergenic 25.0%
!!! GAGGTTATTTTGAAATGAAA+TGG - tig0018098:68075-68094 None:intergenic 25.0%
! ATGTTCTACACAAATAGTTA+TGG + tig0018098:67878-67897 Msa1363890:intron 25.0%
! TTTATTCGATATAGCAAGTT+GGG - tig0018098:67966-67985 None:intergenic 25.0%
!! TTTTATTCGATATAGCAAGT+TGG - tig0018098:67967-67986 None:intergenic 25.0%
! GTATTTATAGGAACTAACTT+GGG - tig0018098:68040-68059 None:intergenic 25.0%
! AGTATTTATAGGAACTAACT+TGG - tig0018098:68041-68060 None:intergenic 25.0%
!!! TGGTAAATGAGAGTATTTAT+AGG - tig0018098:68052-68071 None:intergenic 25.0%
!!! GTTATTTTGAAATGAAATGG+TGG - tig0018098:68072-68091 None:intergenic 25.0%
!!! GAGGTTATTTTGAAATGAAA+TGG - tig0018098:68075-68094 None:intergenic 25.0%
AAAGAATCAAACAAGTTCAG+TGG + tig0018098:67665-67684 Msa1363890:intron 30.0%
TGAGAATCTGATATTGCTTT+CGG - tig0018098:67717-67736 None:intergenic 30.0%
! ACACAAATAGTTATGGACTA+TGG + tig0018098:67885-67904 Msa1363890:intron 30.0%
AACTATAGTAGACTTAGACT+AGG - tig0018098:67918-67937 None:intergenic 30.0%
TAACAGTATCATCATCAAGA+TGG + tig0018098:68325-68344 Msa1363890:CDS 30.0%
AACATTCTGTTTCAAGAACT+TGG + tig0018098:68425-68444 Msa1363890:CDS 30.0%
ACATTCTGTTTCAAGAACTT+GGG + tig0018098:68426-68445 Msa1363890:CDS 30.0%
TGATCAATTTCATGAACCAT+AGG - tig0018098:68458-68477 None:intergenic 30.0%
TGATTCAATTAGAACGAGAT+TGG - tig0018098:68637-68656 None:intergenic 30.0%
AAAGAATCAAACAAGTTCAG+TGG + tig0018098:67665-67684 Msa1363890:intron 30.0%
TGAGAATCTGATATTGCTTT+CGG - tig0018098:67717-67736 None:intergenic 30.0%
! ACACAAATAGTTATGGACTA+TGG + tig0018098:67885-67904 Msa1363890:intron 30.0%
AACTATAGTAGACTTAGACT+AGG - tig0018098:67918-67937 None:intergenic 30.0%
TAACAGTATCATCATCAAGA+TGG + tig0018098:68325-68344 Msa1363890:CDS 30.0%
AACATTCTGTTTCAAGAACT+TGG + tig0018098:68425-68444 Msa1363890:CDS 30.0%
ACATTCTGTTTCAAGAACTT+GGG + tig0018098:68426-68445 Msa1363890:CDS 30.0%
TGATCAATTTCATGAACCAT+AGG - tig0018098:68458-68477 None:intergenic 30.0%
TGATTCAATTAGAACGAGAT+TGG - tig0018098:68637-68656 None:intergenic 30.0%
!! ATTGCCTTTTGAGAAGAAGT+GGG - tig0018098:67594-67613 None:intergenic 35.0%
CTTTGAATCGTTATGGAGAA+AGG - tig0018098:67747-67766 None:intergenic 35.0%
! TCAATTAATACCTGGTTCTC+GGG - tig0018098:67778-67797 None:intergenic 35.0%
! GTCAATTAATACCTGGTTCT+CGG - tig0018098:67779-67798 None:intergenic 35.0%
GAAAGTGGTCAATTAATACC+TGG - tig0018098:67786-67805 None:intergenic 35.0%
AAGTTGGGAGACATATTTAC+AGG - tig0018098:67951-67970 None:intergenic 35.0%
TTCGATCTGATGGTTGTATT+GGG - tig0018098:68139-68158 None:intergenic 35.0%
ATTCGATCTGATGGTTGTAT+TGG - tig0018098:68140-68159 None:intergenic 35.0%
! AATTCAGTTTCGATTCGATC+TGG + tig0018098:68157-68176 Msa1363890:intron 35.0%
TGTTTCAAGAACTTGGGATT+AGG + tig0018098:68432-68451 Msa1363890:CDS 35.0%
!! AAATGGAGAAAGCTTTGTTG+AGG + tig0018098:68495-68514 Msa1363890:CDS 35.0%
AAGGGACATAATTTCATTGG+TGG - tig0018098:68576-68595 None:intergenic 35.0%
GTGAAGGGACATAATTTCAT+TGG - tig0018098:68579-68598 None:intergenic 35.0%
CAATTAGAACGAGATTGGTA+TGG - tig0018098:68632-68651 None:intergenic 35.0%
AGTTTATTCTTCCAGCAACA+AGG - tig0018098:68665-68684 None:intergenic 35.0%
TTGTTGCTGGAAGAATAAAC+TGG + tig0018098:68664-68683 Msa1363890:three_prime_UTR 35.0%
!! ATTGCCTTTTGAGAAGAAGT+GGG - tig0018098:67594-67613 None:intergenic 35.0%
CTTTGAATCGTTATGGAGAA+AGG - tig0018098:67747-67766 None:intergenic 35.0%
! TCAATTAATACCTGGTTCTC+GGG - tig0018098:67778-67797 None:intergenic 35.0%
! GTCAATTAATACCTGGTTCT+CGG - tig0018098:67779-67798 None:intergenic 35.0%
GAAAGTGGTCAATTAATACC+TGG - tig0018098:67786-67805 None:intergenic 35.0%
AAGTTGGGAGACATATTTAC+AGG - tig0018098:67951-67970 None:intergenic 35.0%
TTCGATCTGATGGTTGTATT+GGG - tig0018098:68139-68158 None:intergenic 35.0%
ATTCGATCTGATGGTTGTAT+TGG - tig0018098:68140-68159 None:intergenic 35.0%
! AATTCAGTTTCGATTCGATC+TGG + tig0018098:68157-68176 Msa1363890:intron 35.0%
TGTTTCAAGAACTTGGGATT+AGG + tig0018098:68432-68451 Msa1363890:CDS 35.0%
!! AAATGGAGAAAGCTTTGTTG+AGG + tig0018098:68495-68514 Msa1363890:CDS 35.0%
AAGGGACATAATTTCATTGG+TGG - tig0018098:68576-68595 None:intergenic 35.0%
GTGAAGGGACATAATTTCAT+TGG - tig0018098:68579-68598 None:intergenic 35.0%
CAATTAGAACGAGATTGGTA+TGG - tig0018098:68632-68651 None:intergenic 35.0%
AGTTTATTCTTCCAGCAACA+AGG - tig0018098:68665-68684 None:intergenic 35.0%
TTGTTGCTGGAAGAATAAAC+TGG + tig0018098:68664-68683 Msa1363890:three_prime_UTR 35.0%
!! CATTGCCTTTTGAGAAGAAG+TGG - tig0018098:67595-67614 None:intergenic 40.0%
CACTTCTTCTCAAAAGGCAA+TGG + tig0018098:67593-67612 Msa1363890:intron 40.0%
! TCAGCTGCTTTGAATCGTTA+TGG - tig0018098:67754-67773 None:intergenic 40.0%
! TTGGGAAGCACATTGAAAAG+AGG - tig0018098:68022-68041 None:intergenic 40.0%
TCTGATGGTTGTATTGGGTT+TGG - tig0018098:68134-68153 None:intergenic 40.0%
CGAAACTGAATTCGATCTGA+TGG - tig0018098:68149-68168 None:intergenic 40.0%
!! TCAAGATGGACAAAGTGTTG+AGG + tig0018098:68339-68358 Msa1363890:CDS 40.0%
TTGAGGTTGGCATCTGAAAA+AGG + tig0018098:68356-68375 Msa1363890:CDS 40.0%
GAAATTGATCAAGACCCTGA+AGG + tig0018098:68467-68486 Msa1363890:CDS 40.0%
!! GAGAAAGCTTTGTTGAGGTT+AGG + tig0018098:68500-68519 Msa1363890:CDS 40.0%
ATTATGTCCCTTCACCTAAG+TGG + tig0018098:68584-68603 Msa1363890:CDS 40.0%
GAATCATGATACCTTGTTGC+TGG + tig0018098:68651-68670 Msa1363890:exon 40.0%
!! CATTGCCTTTTGAGAAGAAG+TGG - tig0018098:67595-67614 None:intergenic 40.0%
CACTTCTTCTCAAAAGGCAA+TGG + tig0018098:67593-67612 Msa1363890:intron 40.0%
! TCAGCTGCTTTGAATCGTTA+TGG - tig0018098:67754-67773 None:intergenic 40.0%
! TTGGGAAGCACATTGAAAAG+AGG - tig0018098:68022-68041 None:intergenic 40.0%
TCTGATGGTTGTATTGGGTT+TGG - tig0018098:68134-68153 None:intergenic 40.0%
CGAAACTGAATTCGATCTGA+TGG - tig0018098:68149-68168 None:intergenic 40.0%
!! TCAAGATGGACAAAGTGTTG+AGG + tig0018098:68339-68358 Msa1363890:CDS 40.0%
TTGAGGTTGGCATCTGAAAA+AGG + tig0018098:68356-68375 Msa1363890:CDS 40.0%
GAAATTGATCAAGACCCTGA+AGG + tig0018098:68467-68486 Msa1363890:CDS 40.0%
!! GAGAAAGCTTTGTTGAGGTT+AGG + tig0018098:68500-68519 Msa1363890:CDS 40.0%
ATTATGTCCCTTCACCTAAG+TGG + tig0018098:68584-68603 Msa1363890:CDS 40.0%
GAATCATGATACCTTGTTGC+TGG + tig0018098:68651-68670 Msa1363890:exon 40.0%
!! CTTTTGAGAAGAAGTGGGAG+TGG - tig0018098:67589-67608 None:intergenic 45.0%
CACTCCCACTTCTTCTCAAA+AGG + tig0018098:67587-67606 Msa1363890:intron 45.0%
! TCAGTTTCGATTCGATCTGG+TGG + tig0018098:68160-68179 Msa1363890:intron 45.0%
! TTCGATTCGATCTGGTGGTT+TGG + tig0018098:68165-68184 Msa1363890:intron 45.0%
! TCGATTCGATCTGGTGGTTT+GGG + tig0018098:68166-68185 Msa1363890:intron 45.0%
GGGCGGTCTAAATAAATCCA+AGG + tig0018098:68186-68205 Msa1363890:intron 45.0%
!! GATGGACAAAGTGTTGAGGT+TGG + tig0018098:68343-68362 Msa1363890:CDS 45.0%
GTTGGCATCTGAAAAAGGTG+TGG + tig0018098:68361-68380 Msa1363890:CDS 45.0%
AGAACTTGGGATTAGGCCTA+TGG + tig0018098:68439-68458 Msa1363890:CDS 45.0%
TTGATCAAGACCCTGAAGGA+AGG + tig0018098:68471-68490 Msa1363890:CDS 45.0%
TGATCAAGACCCTGAAGGAA+GGG + tig0018098:68472-68491 Msa1363890:CDS 45.0%
TCTCCATTTCCCTTCCTTCA+GGG - tig0018098:68484-68503 None:intergenic 45.0%
TTCTCCATTTCCCTTCCTTC+AGG - tig0018098:68485-68504 None:intergenic 45.0%
TTCCTGCTGTGTTCATTGGA+GGG + tig0018098:68537-68556 Msa1363890:CDS 45.0%
TTCATTGGAGGGCAACTGAT+GGG + tig0018098:68548-68567 Msa1363890:CDS 45.0%
ATTGAGTGAGTGAGCCACTT+AGG - tig0018098:68601-68620 None:intergenic 45.0%
!! CTTTTGAGAAGAAGTGGGAG+TGG - tig0018098:67589-67608 None:intergenic 45.0%
CACTCCCACTTCTTCTCAAA+AGG + tig0018098:67587-67606 Msa1363890:intron 45.0%
! TCAGTTTCGATTCGATCTGG+TGG + tig0018098:68160-68179 Msa1363890:intron 45.0%
! TTCGATTCGATCTGGTGGTT+TGG + tig0018098:68165-68184 Msa1363890:intron 45.0%
! TCGATTCGATCTGGTGGTTT+GGG + tig0018098:68166-68185 Msa1363890:intron 45.0%
GGGCGGTCTAAATAAATCCA+AGG + tig0018098:68186-68205 Msa1363890:intron 45.0%
!! GATGGACAAAGTGTTGAGGT+TGG + tig0018098:68343-68362 Msa1363890:CDS 45.0%
GTTGGCATCTGAAAAAGGTG+TGG + tig0018098:68361-68380 Msa1363890:CDS 45.0%
AGAACTTGGGATTAGGCCTA+TGG + tig0018098:68439-68458 Msa1363890:CDS 45.0%
TTGATCAAGACCCTGAAGGA+AGG + tig0018098:68471-68490 Msa1363890:CDS 45.0%
TGATCAAGACCCTGAAGGAA+GGG + tig0018098:68472-68491 Msa1363890:CDS 45.0%
TCTCCATTTCCCTTCCTTCA+GGG - tig0018098:68484-68503 None:intergenic 45.0%
TTCTCCATTTCCCTTCCTTC+AGG - tig0018098:68485-68504 None:intergenic 45.0%
TTCCTGCTGTGTTCATTGGA+GGG + tig0018098:68537-68556 Msa1363890:CDS 45.0%
TTCATTGGAGGGCAACTGAT+GGG + tig0018098:68548-68567 Msa1363890:CDS 45.0%
ATTGAGTGAGTGAGCCACTT+AGG - tig0018098:68601-68620 None:intergenic 45.0%
! ATTCGATCTGGTGGTTTGGG+CGG + tig0018098:68169-68188 Msa1363890:intron 50.0%
AGACCCTGAAGGAAGGGAAA+TGG + tig0018098:68478-68497 Msa1363890:CDS 50.0%
CCAATGAACACAGCAGGAAC+AGG - tig0018098:68536-68555 None:intergenic 50.0%
CCTGTTCCTGCTGTGTTCAT+TGG + tig0018098:68533-68552 Msa1363890:CDS 50.0%
GTTCCTGCTGTGTTCATTGG+AGG + tig0018098:68536-68555 Msa1363890:CDS 50.0%
GTTCATTGGAGGGCAACTGA+TGG + tig0018098:68547-68566 Msa1363890:CDS 50.0%
TCATTGGAGGGCAACTGATG+GGG + tig0018098:68549-68568 Msa1363890:CDS 50.0%
GAGTGAGCCACTTAGGTGAA+GGG - tig0018098:68594-68613 None:intergenic 50.0%
TGAGTGAGCCACTTAGGTGA+AGG - tig0018098:68595-68614 None:intergenic 50.0%
! ATTCGATCTGGTGGTTTGGG+CGG + tig0018098:68169-68188 Msa1363890:intron 50.0%
AGACCCTGAAGGAAGGGAAA+TGG + tig0018098:68478-68497 Msa1363890:CDS 50.0%
CCAATGAACACAGCAGGAAC+AGG - tig0018098:68536-68555 None:intergenic 50.0%
CCTGTTCCTGCTGTGTTCAT+TGG + tig0018098:68533-68552 Msa1363890:CDS 50.0%
GTTCCTGCTGTGTTCATTGG+AGG + tig0018098:68536-68555 Msa1363890:CDS 50.0%
GTTCATTGGAGGGCAACTGA+TGG + tig0018098:68547-68566 Msa1363890:CDS 50.0%
TCATTGGAGGGCAACTGATG+GGG + tig0018098:68549-68568 Msa1363890:CDS 50.0%
GAGTGAGCCACTTAGGTGAA+GGG - tig0018098:68594-68613 None:intergenic 50.0%
TGAGTGAGCCACTTAGGTGA+AGG - tig0018098:68595-68614 None:intergenic 50.0%
TGCCCTCCAATGAACACAGC+AGG - tig0018098:68542-68561 None:intergenic 55.0%
TGCCCTCCAATGAACACAGC+AGG - tig0018098:68542-68561 None:intergenic 55.0%
AGCAGCTGATCCCGAGAACC+AGG + tig0018098:67765-67784 Msa1363890:intron 60.0%
AGCAGCTGATCCCGAGAACC+AGG + tig0018098:67765-67784 Msa1363890:intron 60.0%
Chromosome Type Strat End Strand Name
tig0018098 gene 67554 68835 67554 ID=Msa1363890;Name=Msa1363890
tig0018098 mRNA 67554 68835 67554 ID=Msa1363890-mRNA-1;Parent=Msa1363890;Name=Msa1363890-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0.5|0.5|1|1|2|183|119
tig0018098 exon 67554 67558 67554 ID=Msa1363890-mRNA-1:exon:13734;Parent=Msa1363890-mRNA-1
tig0018098 exon 68298 68835 68298 ID=Msa1363890-mRNA-1:exon:13735;Parent=Msa1363890-mRNA-1
tig0018098 CDS 67554 67558 67554 ID=Msa1363890-mRNA-1:cds;Parent=Msa1363890-mRNA-1
tig0018098 CDS 68298 68652 68298 ID=Msa1363890-mRNA-1:cds;Parent=Msa1363890-mRNA-1
tig0018098 three_prime_UTR 68653 68835 68653 ID=Msa1363890-mRNA-1:three_prime_utr;Parent=Msa1363890-mRNA-1
Gene Sequence

>Msa1363890

ATGAAAAGATCAACTACAAGAACTAGAACTTTTAACAGTATCATCATCAAGATGGACAAAGTGTTGAGGTTGGCATCTGAAAAAGGTGTGGTGATTTTCACAAAGAGTTCATGTTGTCTATGCTATGCAGTTAACATTCTGTTTCAAGAACTTGGGATTAGGCCTATGGTTCATGAAATTGATCAAGACCCTGAAGGAAGGGAAATGGAGAAAGCTTTGTTGAGGTTAGGTTGTACTGCACCTGTTCCTGCTGTGTTCATTGGAGGGCAACTGATGGGGTCCACCAATGAAATTATGTCCCTTCACCTAAGTGGCTCACTCACTCAATTGATCAAGCCATACCAATCTCGTTCTAATTGA

Protein sequence

>Msa1363890

MKRSTTRTRTFNSIIIKMDKVLRLASEKGVVIFTKSSCCLCYAVNILFQELGIRPMVHEIDQDPEGREMEKALLRLGCTAPVPAVFIGGQLMGSTNEIMSLHLSGSLTQLIKPYQSRSN*