Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0311920 | KEH36513.1 | 93.103 | 261 | 14 | 2 | 1 | 260 | 1 | 258 | 4.81e-163 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007080 | Msa0311920 | 0.800074 | 1.708995e-48 | -8.615850e-47 |
| Msa0012440 | Msa0311920 | 0.817164 | 3.800755e-52 | -8.615850e-47 |
| Msa0050730 | Msa0311920 | 0.819356 | 1.212317e-52 | -8.615850e-47 |
| Msa0050760 | Msa0311920 | 0.817605 | 3.023650e-52 | -8.615850e-47 |
| Msa0057240 | Msa0311920 | 0.806305 | 8.773758e-50 | -8.615850e-47 |
| Msa0105340 | Msa0311920 | 0.803346 | 3.642253e-49 | -8.615850e-47 |
| Msa0105420 | Msa0311920 | 0.824536 | 7.653786e-54 | -8.615850e-47 |
| Msa0140910 | Msa0311920 | 0.822970 | 1.781441e-53 | -8.615850e-47 |
| Msa0149560 | Msa0311920 | 0.812970 | 3.242964e-51 | -8.615850e-47 |
| Msa0151690 | Msa0311920 | 0.809092 | 2.244190e-50 | -8.615850e-47 |
| Msa0185480 | Msa0311920 | 0.807037 | 6.147143e-50 | -8.615850e-47 |
| Msa0191190 | Msa0311920 | 0.978155 | 3.076919e-145 | -8.615850e-47 |
| Msa0203170 | Msa0311920 | 0.808103 | 3.650938e-50 | -8.615850e-47 |
| Msa0203640 | Msa0311920 | 0.808149 | 3.569607e-50 | -8.615850e-47 |
| Msa0211010 | Msa0311920 | 0.814224 | 1.717941e-51 | -8.615850e-47 |
| Msa0217400 | Msa0311920 | 0.853709 | 1.997246e-61 | -8.615850e-47 |
| Msa0219190 | Msa0311920 | 0.801439 | 9.000820e-49 | -8.615850e-47 |
| Msa0257250 | Msa0311920 | 0.823924 | 1.066040e-53 | -8.615850e-47 |
| Msa0258760 | Msa0311920 | 0.800248 | 1.575710e-48 | -8.615850e-47 |
| Msa0284860 | Msa0311920 | 0.808663 | 2.772553e-50 | -8.615850e-47 |
| Msa0290650 | Msa0311920 | 0.801940 | 7.103099e-49 | -8.615850e-47 |
| Msa0296560 | Msa0311920 | 0.838561 | 2.672666e-57 | -8.615850e-47 |
| Msa0311920 | Msa0316850 | 0.805938 | 1.048028e-49 | -8.615850e-47 |
| Msa0311920 | Msa0323620 | 0.810849 | 9.395725e-51 | -8.615850e-47 |
| Msa0311920 | Msa0335040 | 0.844011 | 9.845652e-59 | -8.615850e-47 |
| Msa0311920 | Msa0371540 | 0.820773 | 5.746603e-53 | -8.615850e-47 |
| Msa0311920 | Msa0419970 | 0.822596 | 2.177000e-53 | -8.615850e-47 |
| Msa0311920 | Msa0466060 | 0.825903 | 3.635865e-54 | -8.615850e-47 |
| Msa0311920 | Msa0484690 | 0.812758 | 3.608143e-51 | -8.615850e-47 |
| Msa0311920 | Msa0517340 | 0.817976 | 2.493859e-52 | -8.615850e-47 |
| Msa0311920 | Msa0621890 | 0.800251 | 1.573071e-48 | -8.615850e-47 |
| Msa0311920 | Msa0647000 | 0.801538 | 8.590038e-49 | -8.615850e-47 |
| Msa0311920 | Msa0694250 | 0.815956 | 7.085869e-52 | -8.615850e-47 |
| Msa0311920 | Msa0697140 | 0.800680 | 1.286193e-48 | -8.615850e-47 |
| Msa0311920 | Msa0706370 | 0.820122 | 8.104192e-53 | -8.615850e-47 |
| Msa0311920 | Msa0792510 | 0.802136 | 6.474837e-49 | -8.615850e-47 |
| Msa0311920 | Msa0829560 | 0.955990 | 8.437323e-114 | -8.615850e-47 |
| Msa0311920 | Msa0870620 | 0.817796 | 2.737686e-52 | -8.615850e-47 |
| Msa0311920 | Msa0870690 | 0.809282 | 2.044112e-50 | -8.615850e-47 |
| Msa0311920 | Msa0893810 | 0.803901 | 2.794494e-49 | -8.615850e-47 |
| Msa0311920 | Msa0908170 | 0.814592 | 1.424713e-51 | -8.615850e-47 |
| Msa0311920 | Msa0944770 | 0.818820 | 1.605618e-52 | -8.615850e-47 |
| Msa0311920 | Msa0946320 | 0.804338 | 2.265814e-49 | -8.615850e-47 |
| Msa0311920 | Msa1087470 | 0.802806 | 4.711534e-49 | -8.615850e-47 |
| Msa0311920 | Msa1097430 | 0.811616 | 6.403073e-51 | -8.615850e-47 |
| Msa0311920 | Msa1147570 | 0.801209 | 1.003263e-48 | -8.615850e-47 |
| Msa0311920 | Msa1185540 | 0.800725 | 1.259776e-48 | -8.615850e-47 |
| Msa0311920 | Msa1271300 | 0.802184 | 6.327199e-49 | -8.615850e-47 |
| Msa0311920 | Msa1278840 | 0.807401 | 5.147381e-50 | -8.615850e-47 |
| Msa0311920 | Msa1318240 | 0.812588 | 3.931572e-51 | -8.615850e-47 |
| Msa0311920 | Msa1363890 | 0.817660 | 2.938769e-52 | -8.615850e-47 |
| Msa0311920 | Msa1374440 | 0.817750 | 2.804813e-52 | -8.615850e-47 |
| Msa0311920 | Msa1408790 | 0.806648 | 7.428029e-50 | -8.615850e-47 |
| Msa0311920 | Msa1419110 | 0.810319 | 1.222659e-50 | -8.615850e-47 |
| Msa0311920 | Msa1420060 | 0.800388 | 1.475426e-48 | -8.615850e-47 |
| Msa0311920 | Msa1422270 | 0.800684 | 1.283982e-48 | -8.615850e-47 |
| Msa0311920 | Msa1423450 | 0.819226 | 1.297775e-52 | -8.615850e-47 |
| Msa0311920 | Msa1429420 | 0.819368 | 1.204807e-52 | -8.615850e-47 |
| Msa0311920 | Msa1436040 | 0.805177 | 1.514241e-49 | -8.615850e-47 |
| Msa0311920 | Msa1439230 | 0.807899 | 4.034712e-50 | -8.615850e-47 |
| Msa0311920 | Msa1440600 | 0.817848 | 2.664668e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0311920 | MtrunA17_Chr2g0281121 | 93.103 | 261 | 14 | 2 | 1 | 260 | 14 | 271 | 1.05e-166 | 461 |
| Msa0311920 | MtrunA17_Chr4g0048371 | 52.788 | 269 | 94 | 10 | 1 | 249 | 24 | 279 | 4.62e-47 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0311920 | AT4G21500.1 | 34.979 | 243 | 100 | 7 | 17 | 240 | 12 | 215 | 4.05e-18 | 80.9 |
Find 42 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAAGTTGAAATCTAAAA+TGG | 0.203889 | 2_4:-6883073 | Msa0311920:CDS |
| TCGAGACCCACTTGAAAATT+TGG | 0.233268 | 2_4:+6883106 | None:intergenic |
| CACCGGAGAATATGAATTTC+CGG | 0.299531 | 2_4:-6882834 | Msa0311920:CDS |
| GAACTATCTGAATCAGATTC+AGG | 0.336496 | 2_4:+6882895 | None:intergenic |
| TTTCTTCACTCTTAGATCTC+TGG | 0.338598 | 2_4:+6883226 | None:intergenic |
| TTCATCGGAGAATGAGTTTC+CGG | 0.350752 | 2_4:-6882875 | Msa0311920:CDS |
| AGTTTCCGGCGATGGAGAAC+TGG | 0.362497 | 2_4:-6882861 | Msa0311920:CDS |
| AATATAACACCAGTGAGAAT+TGG | 0.374103 | 2_4:+6883276 | None:intergenic |
| GGCTTTAAGAGGAAGGCTTT+GGG | 0.375043 | 2_4:-6882766 | Msa0311920:CDS |
| TGGCTTTAAGAGGAAGGCTT+TGG | 0.384066 | 2_4:-6882767 | Msa0311920:CDS |
| GAGATCTAAGAGTGAAGAAA+AGG | 0.411423 | 2_4:-6883223 | Msa0311920:CDS |
| TTAATTGAGATAGCTCTTGA+TGG | 0.421762 | 2_4:-6882787 | Msa0311920:CDS |
| TCTAATGAGAATTGTGTTGC+TGG | 0.422953 | 2_4:-6882952 | Msa0311920:CDS |
| ACATTTCTCCGACGAAGCGC+AGG | 0.439702 | 2_4:-6882708 | Msa0311920:CDS |
| TAGCTCTTGATGGCTTTAAG+AGG | 0.465176 | 2_4:-6882777 | Msa0311920:CDS |
| TCACCAGTTCCAATTCTCAC+TGG | 0.476880 | 2_4:-6883285 | Msa0311920:CDS |
| GGAGAATGAGTTTCCGGCGA+TGG | 0.484875 | 2_4:-6882869 | Msa0311920:CDS |
| GAAAAGTTGAAATCTAAAAT+GGG | 0.488091 | 2_4:-6883072 | Msa0311920:CDS |
| CTCTATCTTCTTCATCCCAC+CGG | 0.498324 | 2_4:+6882815 | None:intergenic |
| GGCTTTGGGATTTCAGTTTG+AGG | 0.516822 | 2_4:-6882752 | Msa0311920:CDS |
| CACCGGAAATTCATATTCTC+CGG | 0.520892 | 2_4:+6882832 | None:intergenic |
| ATGGAACGTGAAAGCGCCGT+TGG | 0.537116 | 2_4:-6883010 | Msa0311920:CDS |
| GAAAACTCCCTGCGCTTCGT+CGG | 0.545300 | 2_4:+6882700 | None:intergenic |
| TCTTGATGGCTTTAAGAGGA+AGG | 0.545888 | 2_4:-6882773 | Msa0311920:CDS |
| GGGATGAAGAAGATAGAGAA+GGG | 0.548429 | 2_4:-6882810 | Msa0311920:CDS |
| GATGGAGAACTGGGACTCAC+CGG | 0.552428 | 2_4:-6882851 | Msa0311920:CDS |
| ACACCAGTGAGAATTGGAAC+TGG | 0.559238 | 2_4:+6883282 | None:intergenic |
| GAGTCCCAGTTCTCCATCGC+CGG | 0.564533 | 2_4:+6882856 | None:intergenic |
| GATGAGAATCAAGGTGCAGA+AGG | 0.566008 | 2_4:+6883341 | None:intergenic |
| TCTTCATATATAACTTCCAA+CGG | 0.567961 | 2_4:+6882994 | None:intergenic |
| AGGAAAATAGATGAGAATCA+AGG | 0.575079 | 2_4:+6883332 | None:intergenic |
| GTTTCCGGCGATGGAGAACT+GGG | 0.578488 | 2_4:-6882860 | Msa0311920:CDS |
| GGAAAACACCTCCTCCTCGC+CGG | 0.581509 | 2_4:+6882678 | None:intergenic |
| TTAATTCCAACTCAAATCAC+CGG | 0.596284 | 2_4:+6882657 | None:intergenic |
| CATTTCTCCGACGAAGCGCA+GGG | 0.607667 | 2_4:-6882707 | Msa0311920:CDS |
| TGGGATGAAGAAGATAGAGA+AGG | 0.615054 | 2_4:-6882811 | Msa0311920:CDS |
| CGGAGAATATGAATTTCCGG+TGG | 0.615835 | 2_4:-6882831 | Msa0311920:CDS |
| ATCTGATTCAGATAGTTCAT+CGG | 0.620524 | 2_4:-6882890 | Msa0311920:CDS |
| ATATGAAGATGAAGAAACAG+AGG | 0.620651 | 2_4:-6882980 | Msa0311920:CDS |
| GGGGAAAACAGAGGAAAATG+TGG | 0.620751 | 2_4:-6883145 | Msa0311920:CDS |
| GGAGAATATGAATTTCCGGT+GGG | 0.667099 | 2_4:-6882830 | Msa0311920:CDS |
| GTAATAATGCATGAAAACAG+AGG | 0.676002 | 2_4:+6883363 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAGATTTCAACTTTTCTT+CGG | + | chr2_4:6883000-6883019 | None:intergenic | 20.0% |
| !! | AGAAAAGTTGAAATCTAAAA+TGG | - | chr2_4:6883001-6883020 | Msa0311920:CDS | 20.0% |
| !!! | GAAAAGTTGAAATCTAAAAT+GGG | - | chr2_4:6883002-6883021 | Msa0311920:CDS | 20.0% |
| !!! | TTTAGATTTCAACTTTTCTT+CGG | + | chr2_4:6883000-6883019 | None:intergenic | 20.0% |
| !! | AGAAAAGTTGAAATCTAAAA+TGG | - | chr2_4:6883001-6883020 | Msa0311920:CDS | 20.0% |
| !!! | GAAAAGTTGAAATCTAAAAT+GGG | - | chr2_4:6883002-6883021 | Msa0311920:CDS | 20.0% |
| !! | ACTATTTTGCAGAATGAATA+AGG | + | chr2_4:6882765-6882784 | None:intergenic | 25.0% |
| !! | TTGATTTTTGTACTTCGTTT+TGG | - | chr2_4:6882819-6882838 | Msa0311920:CDS | 25.0% |
| ! | AGTGAAGAAAAGGAAAAATT+TGG | - | chr2_4:6882861-6882880 | Msa0311920:CDS | 25.0% |
| ! | TCTTCATATATAACTTCCAA+CGG | + | chr2_4:6883083-6883102 | None:intergenic | 25.0% |
| !! | ACTATTTTGCAGAATGAATA+AGG | + | chr2_4:6882765-6882784 | None:intergenic | 25.0% |
| !! | TTGATTTTTGTACTTCGTTT+TGG | - | chr2_4:6882819-6882838 | Msa0311920:CDS | 25.0% |
| ! | AGTGAAGAAAAGGAAAAATT+TGG | - | chr2_4:6882861-6882880 | Msa0311920:CDS | 25.0% |
| ! | TCTTCATATATAACTTCCAA+CGG | + | chr2_4:6883083-6883102 | None:intergenic | 25.0% |
| GTAATAATGCATGAAAACAG+AGG | + | chr2_4:6882714-6882733 | None:intergenic | 30.0% | |
| AGGAAAATAGATGAGAATCA+AGG | + | chr2_4:6882745-6882764 | None:intergenic | 30.0% | |
| AATATAACACCAGTGAGAAT+TGG | + | chr2_4:6882801-6882820 | None:intergenic | 30.0% | |
| ! | TTCATCTCTGTTTTCTTCAT+TGG | + | chr2_4:6882904-6882923 | None:intergenic | 30.0% |
| AGAAAACAGAGATGAAAAAC+AGG | - | chr2_4:6882908-6882927 | Msa0311920:CDS | 30.0% | |
| GAAAACAGAGATGAAAAACA+GGG | - | chr2_4:6882909-6882928 | Msa0311920:CDS | 30.0% | |
| AAAACAGAGATGAAAAACAG+GGG | - | chr2_4:6882910-6882929 | Msa0311920:CDS | 30.0% | |
| !!! | TCTTGACCAAATTTTCAAGT+GGG | - | chr2_4:6882962-6882981 | Msa0311920:CDS | 30.0% |
| ! | TTGATGAGTCTTTTGTTGAA+TGG | - | chr2_4:6883045-6883064 | Msa0311920:CDS | 30.0% |
| ATATGAAGATGAAGAAACAG+AGG | - | chr2_4:6883094-6883113 | Msa0311920:CDS | 30.0% | |
| ATCTGATTCAGATAGTTCAT+CGG | - | chr2_4:6883184-6883203 | Msa0311920:CDS | 30.0% | |
| TTAATTGAGATAGCTCTTGA+TGG | - | chr2_4:6883287-6883306 | Msa0311920:CDS | 30.0% | |
| TTAATTCCAACTCAAATCAC+CGG | + | chr2_4:6883420-6883439 | None:intergenic | 30.0% | |
| GTAATAATGCATGAAAACAG+AGG | + | chr2_4:6882714-6882733 | None:intergenic | 30.0% | |
| AGGAAAATAGATGAGAATCA+AGG | + | chr2_4:6882745-6882764 | None:intergenic | 30.0% | |
| AATATAACACCAGTGAGAAT+TGG | + | chr2_4:6882801-6882820 | None:intergenic | 30.0% | |
| ! | TTCATCTCTGTTTTCTTCAT+TGG | + | chr2_4:6882904-6882923 | None:intergenic | 30.0% |
| AGAAAACAGAGATGAAAAAC+AGG | - | chr2_4:6882908-6882927 | Msa0311920:CDS | 30.0% | |
| GAAAACAGAGATGAAAAACA+GGG | - | chr2_4:6882909-6882928 | Msa0311920:CDS | 30.0% | |
| AAAACAGAGATGAAAAACAG+GGG | - | chr2_4:6882910-6882929 | Msa0311920:CDS | 30.0% | |
| !!! | TCTTGACCAAATTTTCAAGT+GGG | - | chr2_4:6882962-6882981 | Msa0311920:CDS | 30.0% |
| ! | TTGATGAGTCTTTTGTTGAA+TGG | - | chr2_4:6883045-6883064 | Msa0311920:CDS | 30.0% |
| ATATGAAGATGAAGAAACAG+AGG | - | chr2_4:6883094-6883113 | Msa0311920:CDS | 30.0% | |
| ATCTGATTCAGATAGTTCAT+CGG | - | chr2_4:6883184-6883203 | Msa0311920:CDS | 30.0% | |
| TTAATTGAGATAGCTCTTGA+TGG | - | chr2_4:6883287-6883306 | Msa0311920:CDS | 30.0% | |
| TTAATTCCAACTCAAATCAC+CGG | + | chr2_4:6883420-6883439 | None:intergenic | 30.0% | |
| TTTCTTCACTCTTAGATCTC+TGG | + | chr2_4:6882851-6882870 | None:intergenic | 35.0% | |
| GAGATCTAAGAGTGAAGAAA+AGG | - | chr2_4:6882851-6882870 | Msa0311920:CDS | 35.0% | |
| !! | CTCTTGACCAAATTTTCAAG+TGG | - | chr2_4:6882961-6882980 | Msa0311920:CDS | 35.0% |
| TCTAATGAGAATTGTGTTGC+TGG | - | chr2_4:6883122-6883141 | Msa0311920:CDS | 35.0% | |
| GAACTATCTGAATCAGATTC+AGG | + | chr2_4:6883182-6883201 | None:intergenic | 35.0% | |
| TTTCTTCACTCTTAGATCTC+TGG | + | chr2_4:6882851-6882870 | None:intergenic | 35.0% | |
| GAGATCTAAGAGTGAAGAAA+AGG | - | chr2_4:6882851-6882870 | Msa0311920:CDS | 35.0% | |
| !! | CTCTTGACCAAATTTTCAAG+TGG | - | chr2_4:6882961-6882980 | Msa0311920:CDS | 35.0% |
| TCTAATGAGAATTGTGTTGC+TGG | - | chr2_4:6883122-6883141 | Msa0311920:CDS | 35.0% | |
| GAACTATCTGAATCAGATTC+AGG | + | chr2_4:6883182-6883201 | None:intergenic | 35.0% | |
| TGAAAAACAGGGGAAAACAG+AGG | - | chr2_4:6882920-6882939 | Msa0311920:CDS | 40.0% | |
| TCGAGACCCACTTGAAAATT+TGG | + | chr2_4:6882971-6882990 | None:intergenic | 40.0% | |
| TTCATCGGAGAATGAGTTTC+CGG | - | chr2_4:6883199-6883218 | Msa0311920:CDS | 40.0% | |
| CACCGGAGAATATGAATTTC+CGG | - | chr2_4:6883240-6883259 | Msa0311920:CDS | 40.0% | |
| CACCGGAAATTCATATTCTC+CGG | + | chr2_4:6883245-6883264 | None:intergenic | 40.0% | |
| GGAGAATATGAATTTCCGGT+GGG | - | chr2_4:6883244-6883263 | Msa0311920:CDS | 40.0% | |
| TGGGATGAAGAAGATAGAGA+AGG | - | chr2_4:6883263-6883282 | Msa0311920:CDS | 40.0% | |
| GGGATGAAGAAGATAGAGAA+GGG | - | chr2_4:6883264-6883283 | Msa0311920:CDS | 40.0% | |
| !! | TAGCTCTTGATGGCTTTAAG+AGG | - | chr2_4:6883297-6883316 | Msa0311920:CDS | 40.0% |
| !! | TCTTGATGGCTTTAAGAGGA+AGG | - | chr2_4:6883301-6883320 | Msa0311920:CDS | 40.0% |
| ! | TGTTTTCCGGTGATTTGAGT+TGG | - | chr2_4:6883411-6883430 | Msa0311920:CDS | 40.0% |
| TGAAAAACAGGGGAAAACAG+AGG | - | chr2_4:6882920-6882939 | Msa0311920:CDS | 40.0% | |
| TCGAGACCCACTTGAAAATT+TGG | + | chr2_4:6882971-6882990 | None:intergenic | 40.0% | |
| TTCATCGGAGAATGAGTTTC+CGG | - | chr2_4:6883199-6883218 | Msa0311920:CDS | 40.0% | |
| CACCGGAGAATATGAATTTC+CGG | - | chr2_4:6883240-6883259 | Msa0311920:CDS | 40.0% | |
| CACCGGAAATTCATATTCTC+CGG | + | chr2_4:6883245-6883264 | None:intergenic | 40.0% | |
| GGAGAATATGAATTTCCGGT+GGG | - | chr2_4:6883244-6883263 | Msa0311920:CDS | 40.0% | |
| TGGGATGAAGAAGATAGAGA+AGG | - | chr2_4:6883263-6883282 | Msa0311920:CDS | 40.0% | |
| GGGATGAAGAAGATAGAGAA+GGG | - | chr2_4:6883264-6883283 | Msa0311920:CDS | 40.0% | |
| !! | TAGCTCTTGATGGCTTTAAG+AGG | - | chr2_4:6883297-6883316 | Msa0311920:CDS | 40.0% |
| !! | TCTTGATGGCTTTAAGAGGA+AGG | - | chr2_4:6883301-6883320 | Msa0311920:CDS | 40.0% |
| ! | TGTTTTCCGGTGATTTGAGT+TGG | - | chr2_4:6883411-6883430 | Msa0311920:CDS | 40.0% |
| GATGAGAATCAAGGTGCAGA+AGG | + | chr2_4:6882736-6882755 | None:intergenic | 45.0% | |
| TCACCAGTTCCAATTCTCAC+TGG | - | chr2_4:6882789-6882808 | Msa0311920:CDS | 45.0% | |
| ACACCAGTGAGAATTGGAAC+TGG | + | chr2_4:6882795-6882814 | None:intergenic | 45.0% | |
| GGGGAAAACAGAGGAAAATG+TGG | - | chr2_4:6882929-6882948 | Msa0311920:CDS | 45.0% | |
| CGGAGAATATGAATTTCCGG+TGG | - | chr2_4:6883243-6883262 | Msa0311920:CDS | 45.0% | |
| CTCTATCTTCTTCATCCCAC+CGG | + | chr2_4:6883262-6883281 | None:intergenic | 45.0% | |
| !! | TGGCTTTAAGAGGAAGGCTT+TGG | - | chr2_4:6883307-6883326 | Msa0311920:CDS | 45.0% |
| !! | GGCTTTAAGAGGAAGGCTTT+GGG | - | chr2_4:6883308-6883327 | Msa0311920:CDS | 45.0% |
| !! | GGCTTTGGGATTTCAGTTTG+AGG | - | chr2_4:6883322-6883341 | Msa0311920:CDS | 45.0% |
| GATGAGAATCAAGGTGCAGA+AGG | + | chr2_4:6882736-6882755 | None:intergenic | 45.0% | |
| TCACCAGTTCCAATTCTCAC+TGG | - | chr2_4:6882789-6882808 | Msa0311920:CDS | 45.0% | |
| ACACCAGTGAGAATTGGAAC+TGG | + | chr2_4:6882795-6882814 | None:intergenic | 45.0% | |
| GGGGAAAACAGAGGAAAATG+TGG | - | chr2_4:6882929-6882948 | Msa0311920:CDS | 45.0% | |
| CGGAGAATATGAATTTCCGG+TGG | - | chr2_4:6883243-6883262 | Msa0311920:CDS | 45.0% | |
| CTCTATCTTCTTCATCCCAC+CGG | + | chr2_4:6883262-6883281 | None:intergenic | 45.0% | |
| !! | TGGCTTTAAGAGGAAGGCTT+TGG | - | chr2_4:6883307-6883326 | Msa0311920:CDS | 45.0% |
| !! | GGCTTTAAGAGGAAGGCTTT+GGG | - | chr2_4:6883308-6883327 | Msa0311920:CDS | 45.0% |
| !! | GGCTTTGGGATTTCAGTTTG+AGG | - | chr2_4:6883322-6883341 | Msa0311920:CDS | 45.0% |
| !! | ATGGAACGTGAAAGCGCCGT+TGG | - | chr2_4:6883064-6883083 | Msa0311920:CDS | 55.0% |
| GGAGAATGAGTTTCCGGCGA+TGG | - | chr2_4:6883205-6883224 | Msa0311920:CDS | 55.0% | |
| AGTTTCCGGCGATGGAGAAC+TGG | - | chr2_4:6883213-6883232 | Msa0311920:CDS | 55.0% | |
| GTTTCCGGCGATGGAGAACT+GGG | - | chr2_4:6883214-6883233 | Msa0311920:CDS | 55.0% | |
| GATGGAGAACTGGGACTCAC+CGG | - | chr2_4:6883223-6883242 | Msa0311920:CDS | 55.0% | |
| ACATTTCTCCGACGAAGCGC+AGG | - | chr2_4:6883366-6883385 | Msa0311920:CDS | 55.0% | |
| CATTTCTCCGACGAAGCGCA+GGG | - | chr2_4:6883367-6883386 | Msa0311920:CDS | 55.0% | |
| GAAAACTCCCTGCGCTTCGT+CGG | + | chr2_4:6883377-6883396 | None:intergenic | 55.0% | |
| ! | ACGAAGCGCAGGGAGTTTTC+CGG | - | chr2_4:6883377-6883396 | Msa0311920:CDS | 55.0% |
| !! | ATGGAACGTGAAAGCGCCGT+TGG | - | chr2_4:6883064-6883083 | Msa0311920:CDS | 55.0% |
| GGAGAATGAGTTTCCGGCGA+TGG | - | chr2_4:6883205-6883224 | Msa0311920:CDS | 55.0% | |
| AGTTTCCGGCGATGGAGAAC+TGG | - | chr2_4:6883213-6883232 | Msa0311920:CDS | 55.0% | |
| GTTTCCGGCGATGGAGAACT+GGG | - | chr2_4:6883214-6883233 | Msa0311920:CDS | 55.0% | |
| GATGGAGAACTGGGACTCAC+CGG | - | chr2_4:6883223-6883242 | Msa0311920:CDS | 55.0% | |
| ACATTTCTCCGACGAAGCGC+AGG | - | chr2_4:6883366-6883385 | Msa0311920:CDS | 55.0% | |
| CATTTCTCCGACGAAGCGCA+GGG | - | chr2_4:6883367-6883386 | Msa0311920:CDS | 55.0% | |
| GAAAACTCCCTGCGCTTCGT+CGG | + | chr2_4:6883377-6883396 | None:intergenic | 55.0% | |
| ! | ACGAAGCGCAGGGAGTTTTC+CGG | - | chr2_4:6883377-6883396 | Msa0311920:CDS | 55.0% |
| GAGTCCCAGTTCTCCATCGC+CGG | + | chr2_4:6883221-6883240 | None:intergenic | 60.0% | |
| GGAAAACACCTCCTCCTCGC+CGG | + | chr2_4:6883399-6883418 | None:intergenic | 60.0% | |
| !!! | GGCGAGGAGGAGGTGTTTTC+CGG | - | chr2_4:6883398-6883417 | Msa0311920:CDS | 60.0% |
| GAGTCCCAGTTCTCCATCGC+CGG | + | chr2_4:6883221-6883240 | None:intergenic | 60.0% | |
| GGAAAACACCTCCTCCTCGC+CGG | + | chr2_4:6883399-6883418 | None:intergenic | 60.0% | |
| !!! | GGCGAGGAGGAGGTGTTTTC+CGG | - | chr2_4:6883398-6883417 | Msa0311920:CDS | 60.0% |
| ! | CAGGGAGTTTTCCGGCGAGG+AGG | - | chr2_4:6883385-6883404 | Msa0311920:CDS | 65.0% |
| ! | GGAGTTTTCCGGCGAGGAGG+AGG | - | chr2_4:6883388-6883407 | Msa0311920:CDS | 65.0% |
| ! | CAGGGAGTTTTCCGGCGAGG+AGG | - | chr2_4:6883385-6883404 | Msa0311920:CDS | 65.0% |
| ! | GGAGTTTTCCGGCGAGGAGG+AGG | - | chr2_4:6883388-6883407 | Msa0311920:CDS | 65.0% |
| ! | GCGCAGGGAGTTTTCCGGCG+AGG | - | chr2_4:6883382-6883401 | Msa0311920:CDS | 70.0% |
| ! | GCGCAGGGAGTTTTCCGGCG+AGG | - | chr2_4:6883382-6883401 | Msa0311920:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 6882657 | 6883439 | 6882657 | ID=Msa0311920;Name=Msa0311920 |
| chr2_4 | mRNA | 6882657 | 6883439 | 6882657 | ID=Msa0311920-mRNA-1;Parent=Msa0311920;Name=Msa0311920-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|260 |
| chr2_4 | exon | 6882657 | 6883439 | 6882657 | ID=Msa0311920-mRNA-1:exon:2628;Parent=Msa0311920-mRNA-1 |
| chr2_4 | CDS | 6882657 | 6883439 | 6882657 | ID=Msa0311920-mRNA-1:cds;Parent=Msa0311920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
