AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0466060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0466060 MtrunA17_Chr3g0118661 97.521 484 12 0 1 484 1 484 0.0 986
Msa0466060 MtrunA17_Chr3g0118711 65.962 473 160 1 10 481 10 482 0.0 662
Msa0466060 MtrunA17_Chr3g0118771 65.690 478 163 1 8 484 16 493 0.0 657
Msa0466060 MtrunA17_Chr3g0118691 64.496 476 168 1 10 484 12 487 0.0 649
Msa0466060 MtrunA17_Chr3g0118701 64.496 476 168 1 10 484 12 487 0.0 649
Msa0466060 MtrunA17_Chr3g0118671 62.815 476 176 1 10 484 3 478 0.0 647
Msa0466060 MtrunA17_Chr3g0118751 62.105 475 152 2 10 484 3 449 0.0 607
Msa0466060 MtrunA17_Chr5g0426431 52.452 469 218 4 13 479 12 477 2.26e-180 514
Msa0466060 MtrunA17_Chr3g0092641 50.851 470 226 4 12 479 11 477 6.59e-175 500
Msa0466060 MtrunA17_Chr3g0078841 48.729 472 239 2 9 478 6 476 9.28e-171 489
Msa0466060 MtrunA17_Chr6g0454191 49.061 479 236 3 7 479 4 480 1.99e-169 486
Msa0466060 MtrunA17_Chr6g0454401 49.895 477 231 3 9 479 6 480 6.41e-167 480
Msa0466060 MtrunA17_Chr6g0454341 47.780 473 244 2 9 479 6 477 2.03e-166 478
Msa0466060 MtrunA17_Chr6g0454181 47.479 476 241 5 10 479 7 479 5.31e-162 467
Msa0466060 MtrunA17_Chr6g0454301 48.945 474 237 4 9 479 259 730 5.53e-162 476
Msa0466060 MtrunA17_Chr6g0454301 53.947 228 103 1 251 478 3 228 7.20e-78 258
Msa0466060 MtrunA17_Chr6g0454321 47.084 463 242 2 9 469 6 467 1.18e-160 470
Msa0466060 MtrunA17_Chr6g0454321 46.341 123 61 2 10 127 501 623 5.43e-24 105
Msa0466060 MtrunA17_Chr6g0454331 48.637 477 234 5 11 479 5 478 1.64e-160 463
Msa0466060 MtrunA17_Chr8g0336331 47.034 472 248 2 9 479 6 476 1.75e-160 463
Msa0466060 MtrunA17_Chr4g0050341 46.921 471 245 3 11 476 17 487 2.14e-159 461
Msa0466060 MtrunA17_Chr2g0278711 47.826 483 239 7 3 479 1 476 1.18e-158 459
Msa0466060 MtrunA17_Chr6g0453951 47.629 485 242 6 2 477 43 524 1.14e-156 455
Msa0466060 MtrunA17_Chr6g0454211 49.370 476 232 5 10 479 294 766 2.24e-156 463
Msa0466060 MtrunA17_Chr6g0454211 41.111 270 124 5 129 397 1 236 1.95e-60 211
Msa0466060 MtrunA17_Chr6g0454201 49.895 475 229 5 11 479 9 480 1.12e-155 451
Msa0466060 MtrunA17_Chr6g0454361 48.632 475 235 5 11 479 9 480 1.68e-155 451
Msa0466060 MtrunA17_Chr8g0359821 45.992 474 249 4 10 479 7 477 3.30e-155 450
Msa0466060 MtrunA17_Chr6g0453961 46.947 475 244 4 11 479 17 489 7.75e-155 449
Msa0466060 MtrunA17_Chr6g0454261 46.639 476 245 5 10 479 7 479 9.80e-155 449
Msa0466060 MtrunA17_Chr6g0454291 48.319 476 237 5 10 479 4 476 1.00e-153 446
Msa0466060 MtrunA17_Chr6g0454151 47.368 475 241 4 10 479 7 477 1.32e-149 436
Msa0466060 MtrunA17_Chr6g0454141 44.842 475 255 3 10 479 7 479 3.08e-149 435
Msa0466060 MtrunA17_Chr6g0454351 46.331 477 230 6 9 479 8 464 4.98e-149 434
Msa0466060 MtrunA17_Chr6g0454131 46.723 473 246 3 11 479 8 478 9.44e-149 434
Msa0466060 MtrunA17_Chr6g0454121 45.666 473 251 3 11 479 8 478 1.16e-146 428
Msa0466060 MtrunA17_Chr6g0452771 46.218 476 247 5 10 479 7 479 1.53e-144 423
Msa0466060 MtrunA17_Chr3g0118721 63.605 294 106 1 192 484 1 294 1.97e-138 400
Msa0466060 MtrunA17_Chr5g0423981 44.632 475 219 5 11 479 8 444 5.91e-137 402
Msa0466060 MtrunA17_Chr7g0217881 43.908 476 240 6 10 479 7 461 1.16e-135 399
Msa0466060 MtrunA17_Chr6g0454251 46.701 394 201 5 10 397 4 394 6.80e-124 367
Msa0466060 MtrunA17_Chr5g0426401 52.613 287 129 5 173 456 4 286 7.96e-105 315
Msa0466060 MtrunA17_Chr6g0454271 53.287 289 131 3 192 479 1 286 2.29e-103 310
Msa0466060 MtrunA17_Chr8g0355011 41.033 368 171 3 113 479 39 361 9.34e-96 294
Msa0466060 MtrunA17_Chr5g0412101 36.211 475 277 11 12 477 11 468 2.75e-89 281
Msa0466060 MtrunA17_Chr5g0412131 36.345 476 274 13 12 477 11 467 2.97e-89 280
Msa0466060 MtrunA17_Chr6g0454221 55.844 231 101 1 251 481 3 232 2.82e-88 272
Msa0466060 MtrunA17_Chr6g0454171 41.690 355 157 5 129 479 1 309 4.73e-87 270
Msa0466060 MtrunA17_Chr5g0412111 35.331 484 271 14 10 477 2 459 4.00e-84 267
Msa0466060 MtrunA17_Chr3g0112771 33.613 476 283 9 14 486 13 458 1.45e-79 255
Msa0466060 MtrunA17_Chr4g0032331 32.143 476 280 11 11 477 6 447 3.17e-74 241
Msa0466060 MtrunA17_Chr7g0218811 31.343 469 282 11 4 468 6 438 1.99e-73 239
Msa0466060 MtrunA17_Chr3g0112761 33.475 469 277 13 13 476 8 446 2.14e-73 239
Msa0466060 MtrunA17_Chr7g0218831 30.655 473 279 9 12 476 5 436 3.12e-69 228
Msa0466060 MtrunA17_Chr7g0218821 32.489 474 270 13 12 470 4 442 4.12e-69 228
Msa0466060 MtrunA17_Chr7g0250001 31.148 488 277 15 11 481 4 449 6.86e-69 227
Msa0466060 MtrunA17_Chr7g0218791 29.854 479 288 10 12 478 4 446 2.10e-68 225
Msa0466060 MtrunA17_Chr7g0218841 30.802 474 278 10 12 476 5 437 8.33e-68 224
Msa0466060 MtrunA17_Chr1g0207981 32.099 486 283 16 13 478 13 471 8.96e-68 225
Msa0466060 MtrunA17_Chr5g0414331 31.092 476 286 13 1 468 1 442 5.15e-66 220
Msa0466060 MtrunA17_Chr6g0464881 30.556 468 286 12 9 468 7 443 1.50e-65 218
Msa0466060 MtrunA17_Chr7g0249981 29.713 488 278 13 9 476 21 463 3.99e-65 218
Msa0466060 MtrunA17_Chr3g0098111 30.103 485 304 14 9 478 4 468 1.06e-64 217
Msa0466060 MtrunA17_Chr6g0453981 44.783 230 123 3 129 357 1 227 1.52e-63 206
Msa0466060 MtrunA17_Chr5g0414321 30.538 465 279 13 13 468 11 440 7.90e-63 211
Msa0466060 MtrunA17_Chr6g0464921 30.123 488 295 13 7 482 5 458 1.13e-62 211
Msa0466060 MtrunA17_Chr6g0464871 31.020 461 285 11 13 468 23 455 3.86e-62 209
Msa0466060 MtrunA17_Chr8g0336271 40.833 240 141 1 9 247 6 245 8.93e-62 203
Msa0466060 MtrunA17_Chr6g0464841 31.328 482 284 15 13 482 11 457 1.82e-61 207
Msa0466060 MtrunA17_Chr6g0454371 55.294 170 76 0 310 479 1 170 3.67e-61 197
Msa0466060 MtrunA17_Chr6g0464861 31.084 489 283 15 9 482 7 456 4.21e-61 206
Msa0466060 MtrunA17_Chr8g0365811 29.435 496 301 16 6 478 487 956 1.25e-60 214
Msa0466060 MtrunA17_Chr8g0365811 28.358 469 297 14 6 454 1 450 2.25e-51 187
Msa0466060 MtrunA17_Chr5g0426411 55.488 164 72 1 10 172 9 172 1.05e-59 194
Msa0466060 MtrunA17_Chr6g0454231 45.098 255 99 4 226 479 4 218 1.25e-59 203
Msa0466060 MtrunA17_Chr6g0454231 40.086 232 137 1 9 238 246 477 1.08e-54 190
Msa0466060 MtrunA17_Chr1g0207861 29.792 480 303 13 13 478 8 467 6.52e-58 199
Msa0466060 MtrunA17_Chr3g0122001 29.435 496 310 14 3 478 476 951 9.51e-58 206
Msa0466060 MtrunA17_Chr3g0122001 29.328 491 306 13 9 478 2 472 1.45e-57 205
Msa0466060 MtrunA17_Chr3g0121991 29.862 509 289 18 4 478 70 544 1.28e-57 199
Msa0466060 MtrunA17_Chr8g0377921 29.132 484 299 15 12 476 2 460 1.36e-57 197
Msa0466060 MtrunA17_Chr1g0207971 28.059 474 304 12 13 478 8 452 2.55e-57 196
Msa0466060 MtrunA17_Chr5g0401721 28.016 489 318 15 6 479 1 470 6.20e-57 196
Msa0466060 MtrunA17_Chr1g0161351 29.876 482 300 14 13 478 37 496 8.64e-57 196
Msa0466060 MtrunA17_Chr8g0380531 27.708 480 305 15 13 479 10 460 2.21e-56 194
Msa0466060 MtrunA17_Chr1g0207831 29.098 488 305 13 6 478 1 462 2.05e-55 192
Msa0466060 MtrunA17_Chr4g0053501 28.283 495 304 14 3 478 1 463 2.87e-55 192
Msa0466060 MtrunA17_Chr7g0249931 27.629 485 296 15 13 481 40 485 3.73e-55 191
Msa0466060 MtrunA17_Chr5g0431361 30.083 482 280 17 13 478 12 452 6.28e-54 187
Msa0466060 MtrunA17_Chr8g0336261 58.394 137 57 0 310 446 1 137 2.81e-53 176
Msa0466060 MtrunA17_Chr5g0431401 29.691 485 275 16 13 478 10 447 3.19e-53 185
Msa0466060 MtrunA17_Chr6g0453941 45.000 220 116 4 132 349 56 272 4.27e-53 180
Msa0466060 MtrunA17_Chr1g0207951 28.601 479 296 15 13 478 124 569 7.87e-53 192
Msa0466060 MtrunA17_Chr1g0207951 27.651 481 296 17 13 473 656 1104 9.76e-49 180
Msa0466060 MtrunA17_Chr5g0431441 28.601 486 294 18 13 481 18 467 2.12e-52 184
Msa0466060 MtrunA17_Chr5g0431421 29.752 484 280 15 13 480 10 449 5.51e-52 182
Msa0466060 MtrunA17_Chr8g0334851 29.006 493 285 12 11 472 4 462 1.83e-51 181
Msa0466060 MtrunA17_Chr5g0440421 30.845 509 288 23 10 476 7 493 2.10e-51 182
Msa0466060 MtrunA17_Chr8g0377941 29.046 482 296 16 14 478 8 460 5.30e-51 180
Msa0466060 MtrunA17_Chr8g0336741 28.367 490 283 13 8 467 8 459 6.92e-51 180
Msa0466060 MtrunA17_Chr4g0044511 28.974 497 297 16 9 478 36 503 1.47e-50 179
Msa0466060 MtrunA17_Chr5g0431371 29.959 484 275 16 13 478 10 447 2.66e-50 177
Msa0466060 MtrunA17_Chr4g0053321 28.889 495 303 18 3 478 14 478 7.94e-50 177
Msa0466060 MtrunA17_Chr7g0232401 26.122 490 289 13 13 468 6 456 1.20e-49 176
Msa0466060 MtrunA17_Chr5g0393591 28.112 466 275 11 13 472 17 428 4.56e-49 174
Msa0466060 MtrunA17_Chr8g0336731 28.689 488 288 12 15 476 34 487 1.83e-48 174
Msa0466060 MtrunA17_Chr6g0454281 44.974 189 99 2 10 193 7 195 2.59e-48 165
Msa0466060 MtrunA17_Chr6g0462541 31.980 394 220 12 111 486 106 469 5.43e-48 172
Msa0466060 MtrunA17_Chr7g0243681 29.051 506 281 20 13 478 11 478 9.77e-48 172
Msa0466060 MtrunA17_Chr1g0153451 28.893 488 288 16 13 475 6 459 9.90e-48 171
Msa0466060 MtrunA17_Chr6g0462571 27.856 499 283 15 11 475 2 457 1.53e-47 171
Msa0466060 MtrunA17_Chr1g0159551 26.403 481 273 15 18 468 19 448 2.18e-47 170
Msa0466060 MtrunA17_Chr1g0207931 34.483 261 159 4 230 482 244 500 3.88e-47 170
Msa0466060 MtrunA17_Chr3g0106231 28.067 481 283 16 13 478 18 450 1.57e-46 168
Msa0466060 MtrunA17_Chr8g0347281 28.926 484 278 15 12 468 17 461 2.34e-46 167
Msa0466060 MtrunA17_Chr6g0459311 27.565 497 294 17 1 468 1 460 2.88e-46 167
Msa0466060 MtrunA17_Chr8g0339461 31.088 386 202 11 120 472 110 464 6.26e-46 166
Msa0466060 MtrunA17_Chr5g0448551 25.450 444 296 11 10 447 4 418 6.60e-46 166
Msa0466060 MtrunA17_Chr8g0336651 27.328 494 289 14 13 475 6 460 9.69e-46 171
Msa0466060 MtrunA17_Chr8g0336651 27.812 489 283 14 13 468 781 1232 1.61e-44 167
Msa0466060 MtrunA17_Chr8g0336651 30.739 257 139 5 227 475 545 770 2.33e-32 131
Msa0466060 MtrunA17_Chr1g0173121 26.931 479 284 15 14 468 15 451 1.52e-45 165
Msa0466060 MtrunA17_Chr4g0072761 26.987 478 294 14 13 477 15 450 2.47e-45 164
Msa0466060 MtrunA17_Chr8g0373301 29.545 396 223 12 105 475 98 462 2.55e-45 164
Msa0466060 MtrunA17_Chr8g0339631 28.866 388 229 11 104 468 94 457 5.40e-45 164
Msa0466060 MtrunA17_Chr7g0243631 28.265 513 295 21 6 478 6 485 6.17e-45 164
Msa0466060 MtrunA17_Chr6g0449931 30.040 496 266 20 11 468 4 456 9.85e-45 163
Msa0466060 MtrunA17_Chr8g0347271 28.512 484 280 15 12 468 18 462 1.09e-44 163
Msa0466060 MtrunA17_Chr5g0442541 28.458 506 278 18 10 476 2 462 1.13e-44 163
Msa0466060 MtrunA17_Chr7g0275511 27.699 491 295 15 12 475 14 471 1.39e-44 163
Msa0466060 MtrunA17_Chr8g0361371 26.775 493 290 16 10 468 4 459 1.43e-44 162
Msa0466060 MtrunA17_Chr7g0232391 28.287 502 275 20 13 475 6 461 1.47e-44 162
Msa0466060 MtrunA17_Chr7g0275681 28.226 496 300 15 12 478 11 479 1.56e-44 162
Msa0466060 MtrunA17_Chr7g0232331 26.735 490 292 17 9 467 2 455 2.01e-44 162
Msa0466060 MtrunA17_Chr6g0462531 28.221 489 283 18 11 468 2 453 2.18e-44 162
Msa0466060 MtrunA17_Chr5g0429711 27.071 495 307 15 3 478 1 460 3.39e-44 161
Msa0466060 MtrunA17_Chr7g0265041 27.075 506 318 16 12 486 10 495 4.41e-44 162
Msa0466060 MtrunA17_Chr4g0072771 25.474 475 314 12 10 477 22 463 4.72e-44 161
Msa0466060 MtrunA17_Chr7g0232411 26.946 501 283 17 13 475 6 461 5.66e-44 161
Msa0466060 MtrunA17_Chr8g0336691 27.586 493 291 16 13 475 919 1375 1.04e-43 165
Msa0466060 MtrunA17_Chr8g0336691 26.263 495 295 14 13 475 13 469 6.52e-43 163
Msa0466060 MtrunA17_Chr8g0336691 27.789 475 271 17 13 468 480 901 1.04e-40 156
Msa0466060 MtrunA17_Chr7g0243931 28.200 500 306 15 9 478 13 489 1.22e-43 160
Msa0466060 MtrunA17_Chr1g0179901 25.941 505 313 16 13 481 16 495 1.27e-43 160
Msa0466060 MtrunA17_Chr8g0335141 27.869 488 289 17 9 468 5 457 3.08e-43 159
Msa0466060 MtrunA17_Chr5g0448521 27.888 502 276 19 10 470 2 458 4.38e-43 159
Msa0466060 MtrunA17_Chr6g0486251 27.572 486 282 16 14 468 7 453 4.46e-43 158
Msa0466060 MtrunA17_Chr6g0486201 27.572 486 282 16 14 468 7 453 4.46e-43 158
Msa0466060 MtrunA17_Chr7g0243801 29.026 503 294 16 9 478 3 475 5.31e-43 159
Msa0466060 MtrunA17_Chr4g0060511 28.144 501 300 17 13 478 11 486 5.78e-43 159
Msa0466060 MtrunA17_Chr6g0462551 30.971 381 222 11 111 475 105 460 6.41e-43 158
Msa0466060 MtrunA17_Chr8g0339451 28.176 433 249 12 71 468 47 452 8.28e-43 157
Msa0466060 MtrunA17_Chr7g0243771 28.056 499 296 16 13 478 6 474 1.04e-42 158
Msa0466060 MtrunA17_Chr8g0335161 27.992 493 283 17 9 468 2 455 1.30e-42 157
Msa0466060 MtrunA17_Chr5g0442581 27.539 512 286 18 10 476 2 473 1.33e-42 158
Msa0466060 MtrunA17_Chr6g0462521 30.667 375 207 12 111 468 101 439 3.25e-42 156
Msa0466060 MtrunA17_Chr8g0366391 27.935 494 314 14 7 478 3 476 3.46e-42 156
Msa0466060 MtrunA17_Chr5g0442561 27.756 508 286 19 10 476 2 469 3.64e-42 156
Msa0466060 MtrunA17_Chr7g0249961 34.298 242 143 5 242 476 24 256 4.75e-42 150
Msa0466060 MtrunA17_Chr7g0265141 27.755 490 308 13 7 468 3 474 1.27e-41 155
Msa0466060 MtrunA17_Chr4g0066221 26.735 490 306 14 17 478 15 479 2.35e-41 154
Msa0466060 MtrunA17_Chr5g0442521 27.811 507 290 18 10 476 2 472 3.26e-41 154
Msa0466060 MtrunA17_Chr2g0329111 28.423 482 296 17 9 465 2 459 4.03e-41 154
Msa0466060 MtrunA17_Chr5g0442601 29.331 508 288 22 7 476 398 872 6.56e-41 156
Msa0466060 MtrunA17_Chr5g0442601 28.571 315 170 7 119 420 61 333 5.02e-27 115
Msa0466060 MtrunA17_Chr8g0334831 27.216 485 270 18 10 450 3 448 2.43e-40 151
Msa0466060 MtrunA17_Chr7g0232341 26.559 497 284 19 9 467 2 455 2.82e-40 151
Msa0466060 MtrunA17_Chr8g0339601 30.794 315 171 8 190 475 30 326 2.87e-40 147
Msa0466060 MtrunA17_Chr5g0428081 27.755 490 300 17 17 478 15 478 3.53e-40 151
Msa0466060 MtrunA17_Chr5g0442511 26.614 511 273 18 6 476 42 490 4.40e-40 150
Msa0466060 MtrunA17_Chr4g0066281 25.697 502 281 17 17 478 16 465 5.51e-40 150
Msa0466060 MtrunA17_Chr7g0243951 27.291 502 303 17 11 478 9 482 6.12e-40 150
Msa0466060 MtrunA17_Chr4g0014061 26.844 488 304 17 14 476 10 469 8.90e-40 150
Msa0466060 MtrunA17_Chr2g0302961 26.423 492 308 14 11 478 3 464 9.58e-40 149
Msa0466060 MtrunA17_Chr5g0419771 24.498 498 328 12 13 481 36 514 1.91e-39 149
Msa0466060 MtrunA17_Chr7g0243871 27.921 505 295 20 7 478 3 471 2.43e-39 149
Msa0466060 MtrunA17_Chr5g0419761 27.364 497 309 15 13 478 9 484 3.59e-39 148
Msa0466060 MtrunA17_Chr7g0232311 26.411 496 282 16 10 468 3 452 5.22e-39 147
Msa0466060 MtrunA17_Chr5g0442491 26.667 510 291 17 10 476 2 471 5.58e-39 147
Msa0466060 MtrunA17_Chr6g0454111 42.945 163 90 2 169 330 23 183 6.90e-39 139
Msa0466060 MtrunA17_Chr2g0294931 25.676 518 291 16 10 478 8 480 2.61e-38 146
Msa0466060 MtrunA17_Chr4g0066201 27.701 509 298 19 3 481 8 476 3.52e-38 145
Msa0466060 MtrunA17_Chr5g0403641 32.056 287 154 6 221 478 227 501 3.96e-38 145
Msa0466060 MtrunA17_Chr3g0118731 61.111 108 42 0 65 172 28 135 4.70e-38 136
Msa0466060 MtrunA17_Chr8g0374931 26.854 499 295 17 17 478 15 480 6.40e-38 144
Msa0466060 MtrunA17_Chr5g0432731 30.547 311 186 8 183 481 6 298 6.90e-38 140
Msa0466060 MtrunA17_Chr7g0243761 26.585 489 290 16 13 478 11 453 1.45e-37 143
Msa0466060 MtrunA17_Chr8g0374941 24.951 513 285 14 17 478 953 1416 1.62e-37 147
Msa0466060 MtrunA17_Chr8g0374941 24.096 498 278 15 17 463 15 463 6.37e-31 127
Msa0466060 MtrunA17_Chr8g0374941 24.048 499 273 16 17 461 480 926 1.15e-29 123
Msa0466060 MtrunA17_Chr8g0370941 26.019 515 295 15 13 477 8 486 2.09e-37 144
Msa0466060 MtrunA17_Chr3g0079731 25.344 509 298 16 14 477 7 478 2.52e-37 143
Msa0466060 MtrunA17_Chr7g0243781 25.251 499 319 16 7 478 3 474 3.86e-37 142
Msa0466060 MtrunA17_Chr8g0382021 26.050 476 290 15 18 468 39 477 6.27e-37 142
Msa0466060 MtrunA17_Chr4g0066261 26.263 495 303 16 17 478 15 480 7.02e-37 142
Msa0466060 MtrunA17_Chr8g0374901 26.640 503 287 18 17 478 16 477 7.82e-37 141
Msa0466060 MtrunA17_Chr7g0265111 25.731 513 307 18 13 483 39 519 8.08e-37 142
Msa0466060 MtrunA17_Chr8g0339441 35.377 212 109 4 287 474 217 424 9.16e-37 140
Msa0466060 MtrunA17_Chr7g0235051 26.923 494 281 18 13 478 11 452 9.42e-37 141
Msa0466060 MtrunA17_Chr7g0243861 26.358 497 311 14 13 478 14 486 9.86e-37 141
Msa0466060 MtrunA17_Chr2g0294921 26.358 497 300 16 17 478 164 629 1.29e-36 143
Msa0466060 MtrunA17_Chr5g0429681 28.916 498 297 21 1 476 34 496 1.43e-36 141
Msa0466060 MtrunA17_Chr8g0334861 25.610 492 291 18 10 468 3 452 1.85e-36 140
Msa0466060 MtrunA17_Chr7g0265151 27.416 507 304 20 9 478 3 482 5.53e-36 139
Msa0466060 MtrunA17_Chr1g0153461 35.096 208 118 3 285 475 1 208 5.88e-36 132
Msa0466060 MtrunA17_Chr7g0243851 27.959 490 274 18 11 478 9 441 1.55e-35 137
Msa0466060 MtrunA17_Chr4g0044521 26.994 489 290 18 18 477 14 464 1.71e-35 137
Msa0466060 MtrunA17_Chr4g0044501 25.562 489 317 14 13 478 10 474 1.74e-35 138
Msa0466060 MtrunA17_Chr8g0374971 23.866 507 298 14 17 478 16 479 2.14e-35 137
Msa0466060 MtrunA17_Chr7g0265051 25.743 505 316 17 9 478 3 483 2.46e-35 137
Msa0466060 MtrunA17_Chr7g0265101 25.697 502 328 15 5 478 1 485 3.04e-35 137
Msa0466060 MtrunA17_Chr5g0401851 25.100 498 312 15 15 478 12 482 4.01e-35 137
Msa0466060 MtrunA17_Chr6g0463851 25.904 498 302 17 17 478 15 481 6.34e-35 136
Msa0466060 MtrunA17_Chr4g0011051 25.781 512 304 16 11 478 7 486 1.66e-34 135
Msa0466060 MtrunA17_Chr7g0241801 28.477 453 266 16 10 456 6 406 2.78e-34 133
Msa0466060 MtrunA17_Chr3g0106251 30.363 303 180 8 186 478 11 292 3.42e-34 130
Msa0466060 MtrunA17_Chr5g0410941 26.423 492 302 17 17 478 27 488 4.63e-34 134
Msa0466060 MtrunA17_Chr2g0302991 26.358 497 299 16 11 478 3 461 1.51e-33 132
Msa0466060 MtrunA17_Chr6g0463861 25.963 493 299 16 17 478 15 472 1.74e-33 132
Msa0466060 MtrunA17_Chr4g0044481 25.708 424 250 12 13 422 27 399 5.49e-33 130
Msa0466060 MtrunA17_Chr7g0218311 24.746 493 310 18 17 478 20 482 1.25e-32 130
Msa0466060 MtrunA17_Chr8g0350881 24.710 518 286 14 14 478 13 479 1.61e-32 129
Msa0466060 MtrunA17_Chr4g0066151 24.544 493 305 15 17 478 22 478 3.73e-31 125
Msa0466060 MtrunA17_Chr8g0369341 26.139 505 296 21 9 477 3 466 8.03e-31 124
Msa0466060 MtrunA17_Chr5g0420801 26.176 489 304 20 9 476 3 455 9.86e-31 124
Msa0466060 MtrunA17_Chr4g0066131 25.153 489 295 17 17 472 17 467 1.03e-30 124
Msa0466060 MtrunA17_Chr8g0336321 25.813 461 294 17 13 453 7 439 3.94e-30 122
Msa0466060 MtrunA17_Chr7g0241781 26.623 462 267 15 10 458 6 408 4.99e-30 121
Msa0466060 MtrunA17_Chr8g0361411 25.767 489 310 21 6 478 1 452 1.15e-29 120
Msa0466060 MtrunA17_Chr4g0042891 27.034 381 216 11 101 466 119 452 1.80e-29 120
Msa0466060 MtrunA17_Chr2g0294941 28.313 332 187 10 162 463 53 363 2.68e-29 118
Msa0466060 MtrunA17_Chr4g0042931 26.132 486 307 16 13 477 7 461 3.76e-29 119
Msa0466060 MtrunA17_Chr8g0367221 25.941 478 310 16 13 473 798 1248 4.04e-29 122
Msa0466060 MtrunA17_Chr8g0367221 26.477 457 285 18 13 449 12 437 1.17e-27 117
Msa0466060 MtrunA17_Chr8g0367221 24.893 466 310 14 13 463 1288 1728 6.58e-27 115
Msa0466060 MtrunA17_Chr8g0336251 25.597 461 295 17 13 453 7 439 5.62e-29 119
Msa0466060 MtrunA17_Chr4g0029131 27.004 474 275 19 13 460 12 440 7.00e-29 120
Msa0466060 MtrunA17_Chr3g0118741 81.034 58 11 0 10 67 3 60 1.62e-28 107
Msa0466060 MtrunA17_Chr8g0355221 24.590 488 327 16 14 478 16 485 1.87e-28 118
Msa0466060 MtrunA17_Chr6g0464091 28.218 404 251 15 13 405 18 393 3.39e-28 117
Msa0466060 MtrunA17_Chr7g0243711 33.019 212 117 6 288 478 108 315 6.70e-28 113
Msa0466060 MtrunA17_Chr4g0066171 25.358 489 300 19 17 478 25 475 9.07e-28 115
Msa0466060 MtrunA17_Chr5g0416741 23.960 505 334 18 1 478 1 482 1.00e-27 115
Msa0466060 MtrunA17_Chr1g0165701 24.124 485 330 15 14 478 16 482 1.16e-27 115
Msa0466060 MtrunA17_Chr2g0278741 26.681 461 298 17 9 456 92 525 3.54e-27 114
Msa0466060 MtrunA17_Chr7g0232351 28.049 410 233 18 13 397 6 378 3.72e-27 112
Msa0466060 MtrunA17_Chr6g0463891 24.341 493 323 15 14 478 13 483 5.93e-27 113
Msa0466060 MtrunA17_Chr5g0409591 23.591 479 295 14 15 449 5 456 7.31e-27 113
Msa0466060 MtrunA17_Chr7g0243911 34.254 181 102 4 288 451 22 202 2.09e-26 107
Msa0466060 MtrunA17_Chr6g0454381 39.286 140 83 2 129 267 1 139 2.39e-26 103
Msa0466060 MtrunA17_Chr5g0416821 23.868 486 321 16 14 478 15 472 3.16e-26 111
Msa0466060 MtrunA17_Chr1g0196851 25.261 479 280 18 13 460 49 480 3.47e-26 111
Msa0466060 MtrunA17_Chr5g0431431 28.832 274 154 8 183 445 110 353 5.27e-26 108
Msa0466060 MtrunA17_Chr7g0243611 29.642 307 180 12 147 432 5 296 7.40e-26 107
Msa0466060 MtrunA17_Chr2g0278721 26.509 464 297 17 13 457 517 955 1.43e-25 110
Msa0466060 MtrunA17_Chr2g0278721 26.392 485 301 19 9 473 10 458 6.35e-25 108
Msa0466060 MtrunA17_Chr6g0466831 25.270 463 292 13 13 458 18 443 2.06e-25 108
Msa0466060 MtrunA17_Chr6g0482061 24.324 481 314 16 13 467 11 467 4.16e-25 108
Msa0466060 MtrunA17_Chr1g0207881 36.170 141 83 2 334 468 234 373 6.63e-25 106
Msa0466060 MtrunA17_Chr2g0307961 29.502 261 163 8 226 477 218 466 8.62e-25 107
Msa0466060 MtrunA17_Chr6g0466841 26.144 459 293 17 13 458 18 443 2.48e-24 105
Msa0466060 MtrunA17_Chr7g0250021 28.228 333 194 12 13 334 12 310 7.26e-24 102
Msa0466060 MtrunA17_Chr4g0069611 26.724 464 280 19 13 456 15 438 1.79e-23 103
Msa0466060 MtrunA17_Chr3g0079711 33.152 184 103 5 314 477 3 186 2.49e-23 97.4
Msa0466060 MtrunA17_Chr4g0029151 25.000 464 297 15 13 460 20 448 1.10e-22 100
Msa0466060 MtrunA17_Chr2g0302851 26.290 407 248 15 13 405 16 384 1.21e-22 100
Msa0466060 MtrunA17_Chr8g0337381 42.149 121 64 2 359 475 3 121 1.04e-21 90.9
Msa0466060 MtrunA17_Chr7g0243811 39.062 128 75 2 288 412 240 367 1.16e-21 96.7
Msa0466060 MtrunA17_Chr5g0427561 47.619 84 44 0 396 479 1 84 2.62e-21 88.2
Msa0466060 MtrunA17_Chr5g0427571 27.848 237 156 7 227 453 42 273 4.29e-21 93.6
Msa0466060 MtrunA17_Chr6g0454391 62.500 64 24 0 372 435 11 74 8.53e-21 87.8
Msa0466060 MtrunA17_Chr3g0092031 32.121 165 103 5 290 448 6 167 1.25e-19 87.0
Msa0466060 MtrunA17_Chr4g0066141 35.000 140 76 3 354 478 211 350 1.15e-18 87.4
Msa0466060 MtrunA17_Chr8g0357361 28.780 205 131 6 225 424 59 253 1.27e-18 85.9
Msa0466060 MtrunA17_Chr4g0040691 23.517 489 314 17 6 473 1 450 3.52e-17 84.0
Msa0466060 MtrunA17_Chr4g0039881 23.385 449 294 17 23 456 2 415 5.48e-17 83.2
Msa0466060 MtrunA17_Chr2g0319761 24.678 466 291 19 13 456 8 435 9.22e-17 82.4
Msa0466060 MtrunA17_Chr2g0283041 23.176 466 297 21 13 456 7 433 1.01e-16 82.4
Msa0466060 MtrunA17_Chr7g0231631 24.793 242 159 7 248 478 29 258 7.90e-15 74.7
Msa0466060 MtrunA17_Chr4g0040711 26.866 201 131 5 226 423 209 396 4.33e-14 74.3
Msa0466060 MtrunA17_Chr7g0243731 45.588 68 36 1 356 422 6 73 3.22e-13 65.1
Msa0466060 MtrunA17_Chr5g0442501 25.424 354 197 15 10 341 2 310 5.40e-13 69.7
Msa0466060 MtrunA17_Chr7g0267931 64.103 39 13 1 16 53 23 61 1.73e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0466060 AT1G22400.1 48.620 471 238 4 5 472 5 474 6.24e-171 491
Msa0466060 AT1G22360.1 48.491 464 237 1 9 470 6 469 2.71e-170 489
Msa0466060 AT1G22380.1 48.291 468 241 1 6 472 6 473 6.62e-170 488
Msa0466060 AT1G22340.1 46.680 482 255 2 1 480 1 482 9.86e-169 485
Msa0466060 AT1G22370.2 47.908 478 244 1 1 478 1 473 4.12e-166 478
Msa0466060 AT1G22360.2 46.983 464 232 2 9 470 6 457 4.44e-161 464
Msa0466060 AT1G78270.1 45.511 479 256 5 7 482 7 483 2.26e-154 448
Msa0466060 AT1G22370.1 48.333 300 155 0 179 478 4 303 2.59e-95 291
Msa0466060 AT3G46660.1 36.798 481 260 12 3 472 1 448 1.12e-81 261
Msa0466060 AT5G59590.1 35.729 473 249 13 10 468 7 438 2.91e-81 259
Msa0466060 AT3G46690.1 37.844 473 258 10 10 477 6 447 1.24e-80 258
Msa0466060 AT5G38010.1 35.220 477 268 13 10 477 7 451 1.02e-78 253
Msa0466060 AT5G59580.1 34.746 472 260 11 11 472 7 440 1.48e-78 253
Msa0466060 AT3G46650.1 35.095 473 241 10 11 472 8 425 4.16e-78 251
Msa0466060 AT3G46670.1 34.894 470 259 13 13 472 9 441 3.47e-77 249
Msa0466060 AT3G11340.1 33.191 470 275 11 11 476 7 441 1.88e-76 247
Msa0466060 AT5G38040.1 34.267 464 265 12 21 476 18 449 2.51e-76 246
Msa0466060 AT3G46700.1 34.519 478 262 11 10 477 6 442 2.39e-75 244
Msa0466060 AT3G46680.1 35.343 481 245 15 10 470 6 440 1.01e-74 242
Msa0466060 AT3G46720.1 35.849 477 253 12 9 476 5 437 9.49e-73 237
Msa0466060 AT2G36970.1 31.677 483 286 12 9 472 6 463 2.55e-71 234
Msa0466060 AT5G05900.1 31.210 471 283 9 13 476 8 444 1.66e-69 229
Msa0466060 AT5G05880.1 30.704 469 289 9 13 476 8 445 2.54e-69 228
Msa0466060 AT3G21560.1 29.522 481 303 11 12 477 11 470 5.46e-67 223
Msa0466060 AT4G15490.1 30.372 484 289 13 9 472 4 459 4.02e-65 218
Msa0466060 AT5G05890.1 30.316 475 287 9 13 476 8 449 5.51e-65 217
Msa0466060 AT4G15500.1 30.977 481 285 15 9 472 5 455 1.39e-63 214
Msa0466060 AT3G02100.1 29.916 478 291 13 11 476 11 456 3.89e-63 213
Msa0466060 AT1G05675.1 30.233 473 276 14 13 468 6 441 4.70e-63 212
Msa0466060 AT1G05680.1 30.444 473 275 14 13 468 6 441 1.57e-62 211
Msa0466060 AT2G26480.1 32.347 473 279 12 10 476 5 442 1.86e-62 210
Msa0466060 AT5G05870.1 30.932 472 290 10 13 476 8 451 4.84e-62 209
Msa0466060 AT3G55710.1 30.309 485 294 14 13 485 8 460 6.42e-62 209
Msa0466060 AT5G05860.1 31.897 464 280 9 13 472 9 440 9.30e-62 208
Msa0466060 AT3G55700.1 30.372 484 289 13 13 484 8 455 5.87e-61 206
Msa0466060 AT2G31790.1 30.266 489 290 14 6 476 1 456 2.47e-60 205
Msa0466060 AT2G43840.2 30.064 469 275 17 13 468 7 435 2.90e-60 204
Msa0466060 AT4G15480.1 30.126 478 291 15 13 472 19 471 3.68e-60 205
Msa0466060 AT2G31750.1 28.970 466 295 12 11 468 6 443 1.08e-59 203
Msa0466060 AT2G31750.2 28.970 466 295 12 11 468 6 443 2.54e-59 203
Msa0466060 AT2G43840.1 29.851 469 276 17 13 468 7 435 3.43e-59 202
Msa0466060 AT4G14090.1 31.276 486 274 16 1 468 1 444 6.38e-58 198
Msa0466060 AT2G43820.1 29.237 472 281 15 10 468 4 435 1.71e-57 197
Msa0466060 AT2G28080.1 31.330 466 278 15 17 468 22 459 4.75e-57 197
Msa0466060 AT2G23260.1 28.247 485 299 18 7 478 4 452 1.09e-53 187
Msa0466060 AT2G30140.2 30.085 472 277 15 9 468 9 439 1.30e-53 187
Msa0466060 AT2G30140.1 30.085 472 278 15 9 468 9 440 7.19e-53 185
Msa0466060 AT4G01070.1 29.817 493 273 15 9 468 4 456 5.42e-52 183
Msa0466060 AT4G15550.1 26.899 487 294 14 12 470 12 464 7.94e-51 180
Msa0466060 AT1G05560.1 28.571 490 284 18 12 478 4 450 8.64e-51 180
Msa0466060 AT2G23250.1 29.247 465 284 16 22 478 7 434 8.93e-51 179
Msa0466060 AT1G05560.2 28.571 490 284 18 12 478 54 500 1.24e-50 180
Msa0466060 AT1G24100.1 28.543 501 272 18 11 476 9 458 5.83e-50 177
Msa0466060 AT5G17050.1 27.311 476 308 11 9 476 8 453 1.87e-48 173
Msa0466060 AT2G15480.1 27.944 501 303 15 9 478 6 479 3.00e-48 173
Msa0466060 AT2G30150.2 28.542 480 288 14 13 478 13 451 4.13e-48 172
Msa0466060 AT4G34131.1 28.457 499 300 13 10 478 7 478 4.64e-48 172
Msa0466060 AT1G01420.1 29.938 481 281 17 12 468 7 455 8.48e-48 172
Msa0466060 AT1G01420.2 29.938 481 281 17 12 468 10 458 1.26e-47 171
Msa0466060 AT1G01390.2 29.800 500 294 17 2 476 14 481 2.25e-47 171
Msa0466060 AT5G37950.2 33.512 373 209 9 29 398 2 338 2.28e-47 167
Msa0466060 AT1G01390.1 30.040 496 290 17 6 476 1 464 2.70e-47 171
Msa0466060 AT1G30530.1 26.907 472 305 13 13 478 12 449 3.16e-47 170
Msa0466060 AT5G37950.1 34.225 374 213 11 28 398 1 344 3.63e-47 167
Msa0466060 AT1G05530.1 27.088 491 299 18 11 480 3 455 1.06e-46 168
Msa0466060 AT2G15490.3 27.383 493 308 13 13 478 7 476 1.56e-46 169
Msa0466060 AT5G66690.1 27.898 509 279 19 11 478 5 466 3.05e-46 167
Msa0466060 AT2G30150.1 28.151 476 287 14 17 478 1 435 5.97e-46 166
Msa0466060 AT2G15480.2 27.416 507 308 16 9 478 6 489 6.40e-46 167
Msa0466060 AT2G15490.1 27.255 499 310 14 10 478 4 479 1.14e-45 166
Msa0466060 AT4G36770.1 28.986 483 268 18 13 461 4 445 2.04e-45 165
Msa0466060 AT2G36770.1 27.381 504 298 17 13 478 14 487 8.55e-45 164
Msa0466060 AT2G36800.1 28.824 510 306 18 2 478 1 486 5.87e-44 162
Msa0466060 AT2G36750.1 30.118 508 288 18 13 483 10 487 8.91e-44 161
Msa0466060 AT5G26310.1 27.930 512 275 20 11 478 5 466 1.89e-43 160
Msa0466060 AT3G22250.1 26.539 471 292 13 6 452 1 441 2.68e-43 159
Msa0466060 AT3G50740.1 28.291 509 289 19 11 481 5 475 1.30e-42 158
Msa0466060 AT3G21790.1 25.447 503 313 11 11 478 2 477 4.13e-42 157
Msa0466060 AT3G53160.1 28.106 491 311 15 13 478 8 481 5.11e-42 156
Msa0466060 AT2G36780.1 27.381 504 298 17 13 478 14 487 5.85e-42 156
Msa0466060 AT2G36790.1 28.994 507 300 18 13 485 13 493 4.25e-41 154
Msa0466060 AT5G17040.1 25.159 473 308 11 13 478 5 438 4.34e-41 153
Msa0466060 AT2G36760.1 28.343 501 297 18 13 478 14 487 3.16e-40 151
Msa0466060 AT3G16520.3 31.635 373 214 13 120 478 113 458 2.27e-39 149
Msa0466060 AT5G17040.2 29.276 304 199 4 177 478 47 336 2.44e-39 145
Msa0466060 AT5G17030.1 24.843 479 319 11 9 478 8 454 6.45e-39 147
Msa0466060 AT4G34135.1 27.054 499 312 14 8 478 6 480 7.83e-39 147
Msa0466060 AT2G16890.2 27.218 496 293 19 13 478 9 466 1.03e-38 147
Msa0466060 AT5G03490.1 28.542 487 291 18 9 478 15 461 1.64e-38 146
Msa0466060 AT3G21800.1 25.636 511 292 15 14 478 6 474 2.63e-38 146
Msa0466060 AT2G29730.1 25.205 488 312 14 14 479 6 462 4.84e-38 145
Msa0466060 AT2G29750.1 27.108 498 298 18 13 478 8 472 6.03e-38 145
Msa0466060 AT3G53150.1 25.977 435 292 10 1 422 10 427 6.25e-38 145
Msa0466060 AT2G29740.1 27.495 491 302 17 6 469 1 464 7.25e-38 144
Msa0466060 AT3G16520.1 31.909 351 198 13 119 455 112 435 1.84e-37 143
Msa0466060 AT3G16520.2 32.000 350 197 13 120 455 113 435 2.56e-37 142
Msa0466060 AT3G21780.1 26.453 499 305 18 11 479 2 468 2.62e-37 143
Msa0466060 AT4G15280.1 24.603 504 311 15 11 478 2 472 4.29e-37 142
Msa0466060 AT4G15280.2 24.554 505 312 15 11 479 34 505 4.97e-37 143
Msa0466060 AT5G49690.1 29.348 460 262 19 13 451 10 427 1.23e-36 141
Msa0466060 AT1G07250.1 24.346 497 332 14 10 482 3 479 2.27e-36 140
Msa0466060 AT1G07260.1 26.815 496 302 18 13 478 6 470 2.31e-36 140
Msa0466060 AT2G18570.1 25.294 510 296 17 11 480 3 467 3.12e-36 140
Msa0466060 AT2G18560.1 34.256 289 144 10 215 477 106 374 3.15e-36 138
Msa0466060 AT4G15260.1 27.614 373 219 10 133 479 7 354 3.60e-36 137
Msa0466060 AT3G21750.1 25.050 503 305 16 11 478 2 467 4.05e-36 140
Msa0466060 AT3G21760.1 23.506 502 328 14 11 479 2 480 1.41e-35 138
Msa0466060 AT1G10400.1 27.383 493 299 20 10 478 4 461 2.18e-35 137
Msa0466060 AT5G14860.1 27.059 510 299 20 6 478 1 474 2.58e-35 138
Msa0466060 AT2G29710.1 24.696 494 315 14 10 479 2 462 2.69e-35 137
Msa0466060 AT4G34138.1 25.703 498 311 13 11 478 9 477 4.83e-35 137
Msa0466060 AT1G51210.1 26.652 454 286 16 9 453 16 431 2.19e-34 134
Msa0466060 AT5G65550.1 26.434 488 306 13 11 478 7 461 2.55e-34 134
Msa0466060 AT1G07240.1 24.444 495 318 18 14 478 6 474 1.76e-31 127
Msa0466060 AT2G16890.3 26.503 449 263 18 13 432 9 419 8.68e-31 124
Msa0466060 AT5G12890.1 26.815 496 310 17 13 479 10 481 1.48e-30 124
Msa0466060 AT1G73880.1 25.105 478 312 16 11 472 12 459 5.51e-29 119
Msa0466060 AT4G27570.1 25.780 481 293 19 11 473 5 439 1.98e-26 112
Msa0466060 AT2G22590.1 26.237 465 292 16 11 455 13 446 2.40e-25 108
Msa0466060 AT4G27560.1 24.074 486 306 18 11 478 5 445 1.17e-23 103
Msa0466060 AT5G53990.1 25.339 442 265 15 10 439 3 391 2.72e-23 102
Msa0466060 AT5G54010.1 24.689 482 274 18 11 460 4 428 5.06e-22 99.0
Msa0466060 AT1G64910.1 24.439 446 264 14 10 439 3 391 3.28e-21 96.7
Msa0466060 AT4G09500.2 23.984 492 283 20 11 473 4 433 6.32e-19 89.4
Msa0466060 AT1G06000.1 25.843 267 176 7 226 478 174 432 6.75e-17 83.2
Msa0466060 AT3G29630.1 24.477 478 301 20 11 473 4 436 7.61e-17 83.2
Msa0466060 AT4G01070.2 24.269 342 203 9 9 334 4 305 1.46e-16 81.3
Msa0466060 AT1G50580.1 23.640 478 303 17 11 473 4 434 1.79e-16 82.0
Msa0466060 AT4G09500.1 23.422 491 262 18 11 473 4 408 3.70e-16 80.9
Msa0466060 AT2G22930.1 22.642 477 276 18 13 458 6 420 4.13e-16 80.9
Msa0466060 AT3G29630.2 30.102 196 120 7 290 473 220 410 1.09e-15 79.3
Msa0466060 AT4G34135.2 25.000 344 218 11 8 334 6 326 3.37e-15 77.0
Msa0466060 AT1G64920.1 23.663 486 298 20 10 473 3 437 3.72e-15 78.2
Msa0466060 AT5G54060.1 23.644 461 301 16 14 455 14 442 3.80e-14 75.1

Find 117 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATATGATGTGGATTATT+TGG 0.093114 3_3:-66593652 Msa0466060:three_prime_UTR
ATGATTTAACATGTATTAAA+TGG 0.195899 3_3:-66594306 Msa0466060:CDS
TATTATATATGATGGACTTA+TGG 0.231044 3_3:-66596090 Msa0466060:CDS
ATTGGTCCACTTCAATTTCT+AGG 0.240721 3_3:-66594388 Msa0466060:CDS
GCATTGCAGAGCAACAATTT+TGG 0.256872 3_3:-66596037 Msa0466060:CDS
TGATTTCTTTAGGTTATTAA+AGG 0.258092 3_3:-66593744 Msa0466060:CDS
GGGAATAGGGATGGATATTA+AGG 0.258230 3_3:-66593906 Msa0466060:CDS
GTTGTATATGTTGGGATTTA+TGG 0.258310 3_3:+66594411 None:intergenic
TTAATTATTTCCACAAATAA+TGG 0.263464 3_3:-66593608 Msa0466060:three_prime_UTR
AATCCGATGGTGCAAGTCTT+TGG 0.267719 3_3:-66594333 Msa0466060:CDS
CTTCTTACAATGATTTCTTT+AGG 0.272275 3_3:-66593754 Msa0466060:CDS
TGCCTCTGCTTGTGGGTTGA+TGG 0.274121 3_3:-66596012 Msa0466060:CDS
ATTATATATGATGGACTTAT+GGG 0.292263 3_3:-66596089 Msa0466060:CDS
TTGCTTGTATTTCTAATTAG+AGG 0.296591 3_3:-66593497 Msa0466060:three_prime_UTR
TGAAGTTCTTGATGCTCTTA+TGG 0.297884 3_3:-66594434 Msa0466060:CDS
TACATATCTTGTAAGAAATA+TGG 0.312981 3_3:-66596474 Msa0466060:exon
ATAAGCACAACTTGGGGAAT+AGG 0.336581 3_3:-66593920 Msa0466060:CDS
TCAGTGATATATATTAATTA+TGG 0.341235 3_3:-66594262 Msa0466060:CDS
TGTAGATGTTGCAAAGGATT+TGG 0.350911 3_3:-66596060 Msa0466060:CDS
CTGAGCAACAAACAAATTGT+AGG 0.353752 3_3:-66593946 Msa0466060:CDS
TCCAAATAATCCACATCATA+TGG 0.356034 3_3:+66593651 None:intergenic
GTGGATAAATAGGCCAGATT+TGG 0.356652 3_3:-66594164 Msa0466060:CDS
TCATTTGTTGTATGATGTAT+TGG 0.369034 3_3:-66593424 Msa0466060:three_prime_UTR
TTGTAAGTGACCCGAGCATA+TGG 0.371612 3_3:-66593383 Msa0466060:three_prime_UTR
TTCCTGGGGTCCATTCTAGA+TGG 0.378864 3_3:+66594602 None:intergenic
GTCTAGCATCTTTAATGATA+AGG 0.385839 3_3:-66593689 Msa0466060:three_prime_UTR
CATTTGTTGTATGATGTATT+GGG 0.386688 3_3:-66593423 Msa0466060:three_prime_UTR
TTAGATGAAGTTAAGGATAG+AGG 0.388988 3_3:-66594106 Msa0466060:CDS
TTTGGACTGCCTCTGCTTGT+GGG 0.391545 3_3:-66596019 Msa0466060:CDS
AAACGTTTGGTAAAATCTCT+TGG 0.402346 3_3:-66596302 Msa0466060:CDS
CATTGTTCACAAAGGTTATG+TGG 0.406840 3_3:+66596336 None:intergenic
TGTGGAAACCAAGTTTGTTA+AGG 0.407262 3_3:+66596354 None:intergenic
TAAGCACAACTTGGGGAATA+GGG 0.409390 3_3:-66593919 Msa0466060:CDS
GCCTCTGCTTGTGGGTTGAT+GGG 0.410209 3_3:-66596011 Msa0466060:CDS
TCTGAAGGTAAGCCTATGAT+TGG 0.410392 3_3:-66593983 Msa0466060:CDS
GTAGATGTTGCAAAGGATTT+GGG 0.413935 3_3:-66596059 Msa0466060:CDS
GAAATGATCAAGGGTGAAAA+GGG 0.414223 3_3:-66593845 Msa0466060:CDS
ATAGTCTCAAACCTAAAATC+TGG 0.420330 3_3:+66596257 None:intergenic
GAAGGAAATATTGTATGATT+TGG 0.421628 3_3:+66596514 None:intergenic
ATTATTTGTTCCATTATTTG+TGG 0.427733 3_3:+66593598 None:intergenic
GCTAAAATCCTTAACAAACT+TGG 0.430793 3_3:-66596362 Msa0466060:CDS
TGAATTCAACCACAAACGTT+TGG 0.432420 3_3:-66596315 Msa0466060:CDS
GGAAATGATCAAGGGTGAAA+AGG 0.440308 3_3:-66593846 Msa0466060:CDS
TTCTCCACAAGCTCTTTCAA+TGG 0.441645 3_3:+66596149 None:intergenic
GTGGACTTGTTGAAGGTTGT+AGG 0.441801 3_3:-66596187 Msa0466060:CDS
TACTTGCACATCCATCAGTT+GGG 0.442408 3_3:-66594051 Msa0466060:CDS
AAGAAAGGCCAACCAATCAT+AGG 0.443607 3_3:+66593971 None:intergenic
ATCAAACTATAACCTTTGTA+TGG 0.448179 3_3:+66595948 None:intergenic
ACGTGACCTTGTGCTGGAAA+TGG 0.448261 3_3:+66596404 None:intergenic
TATTAAATGGTTAGACCAAT+GGG 0.452336 3_3:-66594293 Msa0466060:CDS
TCTGATGGTGGCAAACCATC+TGG 0.452997 3_3:+66596233 None:intergenic
TTATATTACTGATGGCTCCT+TGG 0.462933 3_3:-66594629 Msa0466060:CDS
CTGATGGATGTGCAAGTACT+TGG 0.468722 3_3:+66594056 None:intergenic
GGTTGTAGGAAACATTGTTA+TGG 0.470472 3_3:-66596173 Msa0466060:CDS
GTTTGTTGCTCAGCAAAGAA+AGG 0.473094 3_3:+66593956 None:intergenic
ATTTGGAGTAGAAGAATGCT+TGG 0.473477 3_3:-66593635 Msa0466060:three_prime_UTR
AGCTTGGAAGGTCTCTCATT+CGG 0.477688 3_3:+66594569 None:intergenic
GTTACATCTATTATATATGA+TGG 0.480488 3_3:-66596098 Msa0466060:CDS
CTCGGGTCACTTACAATGGT+TGG 0.481642 3_3:+66593390 None:intergenic
CCTTGGATGTCCATCTAGAA+TGG 0.491985 3_3:-66594612 Msa0466060:CDS
GGGTTTACGTGACCTTGTGC+TGG 0.492068 3_3:+66596398 None:intergenic
TGTGCAAGTACTTGGCTTTG+AGG 0.492657 3_3:+66594064 None:intergenic
GTGGTTGTTCTAACAAAGCT+TGG 0.493929 3_3:+66594553 None:intergenic
TAAATAGGCCAGATTTGGTA+AGG 0.496694 3_3:-66594159 Msa0466060:CDS
TGGACCAATGTTGTATATGT+TGG 0.500052 3_3:+66594402 None:intergenic
TTAATATATATCACTGAAGA+AGG 0.500769 3_3:+66594268 None:intergenic
GGACCAATGTTGTATATGTT+GGG 0.506632 3_3:+66594403 None:intergenic
ATAATATATGTCTTCTACAA+AGG 0.510249 3_3:-66593580 Msa0466060:three_prime_UTR
AAGGTAAGCCTATGATTGGT+TGG 0.513429 3_3:-66593979 Msa0466060:CDS
TTTGGAGTAGAAGAATGCTT+GGG 0.519170 3_3:-66593634 Msa0466060:three_prime_UTR
TAGGTATATAAGCACAACTT+GGG 0.523212 3_3:-66593927 Msa0466060:CDS
TTTCCAAAGACTTGCACCAT+CGG 0.529299 3_3:+66594330 None:intergenic
GATGAAAGTTATATTACTGA+TGG 0.537450 3_3:-66594637 Msa0466060:CDS
GTCCATCTAGAATGGACCCC+AGG 0.543365 3_3:-66594604 Msa0466060:CDS
AAAACTGATTTCATCTAATG+TGG 0.543689 3_3:+66594534 None:intergenic
AATGCTACACAAAGCATTGG+TGG 0.546367 3_3:-66596206 Msa0466060:CDS
AGCATTGGTGGACTTGTTGA+AGG 0.546579 3_3:-66596194 Msa0466060:CDS
GTATTAAATGGTTAGACCAA+TGG 0.546865 3_3:-66594294 Msa0466060:CDS
TGGTCCATTGAAAGAGCTTG+TGG 0.547074 3_3:-66596153 Msa0466060:CDS
TGTAAGTGACCCGAGCATAT+GGG 0.548921 3_3:-66593382 Msa0466060:three_prime_UTR
GTAGTAGAAGCTGCTAAACC+AGG 0.552938 3_3:-66593782 Msa0466060:CDS
TTGTTCTAACAAAGCTTGGA+AGG 0.553738 3_3:+66594557 None:intergenic
ACTTGTGAAGGAAATGATCA+AGG 0.563405 3_3:-66593855 Msa0466060:CDS
GAAAATGCTACACAAAGCAT+TGG 0.567187 3_3:-66596209 Msa0466060:CDS
AGAAATATGCTTCCATACAA+AGG 0.567354 3_3:-66595960 Msa0466060:intron
CACAACTTGGGGAATAGGGA+TGG 0.568850 3_3:-66593915 Msa0466060:CDS
GGATGATGTGAAAAGAGAAG+AGG 0.572156 3_3:-66593885 Msa0466060:CDS
AGAGGTAACTGAACTTGTGA+AGG 0.575445 3_3:-66593867 Msa0466060:CDS
GTACTTGCACATCCATCAGT+TGG 0.583986 3_3:-66594052 Msa0466060:CDS
ATGATAATTAAGTATAGTGA+AGG 0.584074 3_3:+66596496 None:intergenic
TCCCATCAACCCACAAGCAG+AGG 0.584532 3_3:+66596010 None:intergenic
AATAGGCCAGATTTGGTAAG+GGG 0.586310 3_3:-66594157 Msa0466060:CDS
GAAAATGGATTCAAATCCGA+TGG 0.587889 3_3:-66594346 Msa0466060:CDS
GTTGAATTCATTGTTCACAA+AGG 0.589156 3_3:+66596328 None:intergenic
TTGTTACCTAGAAATTGAAG+TGG 0.589719 3_3:+66594382 None:intergenic
TGTGTAATTTGTGTTATGTG+TGG 0.595763 3_3:-66593451 Msa0466060:three_prime_UTR
AAATAGGCCAGATTTGGTAA+GGG 0.595936 3_3:-66594158 Msa0466060:CDS
AATCCCAACATATACAACAT+TGG 0.596406 3_3:-66594406 Msa0466060:CDS
GTAGGTATATAAGCACAACT+TGG 0.603550 3_3:-66593928 Msa0466060:CDS
TCACTTGAGAGTATTTCTGA+AGG 0.606121 3_3:-66593998 Msa0466060:CDS
TGTGTACCATTTCCAGCACA+AGG 0.607339 3_3:-66596410 Msa0466060:CDS
AGGTTTGAGACTATACCAGA+TGG 0.615743 3_3:-66596248 Msa0466060:CDS
ATAGAGGTTACATAATAACT+TGG 0.616775 3_3:-66594090 Msa0466060:CDS
ATATGTTTCTCCATATGATG+TGG 0.620383 3_3:-66593661 Msa0466060:three_prime_UTR
TATGCTCGGGTCACTTACAA+TGG 0.622940 3_3:+66593386 None:intergenic
TCACTGAAGAAGGTTCCCAT+TGG 0.627473 3_3:+66594278 None:intergenic
CTTGTGAAGGAAATGATCAA+GGG 0.633603 3_3:-66593854 Msa0466060:CDS
TATATAATAGATGTAACTTG+AGG 0.635324 3_3:+66596104 None:intergenic
ATTTGCTGTAGATGTTGCAA+AGG 0.636876 3_3:-66596066 Msa0466060:CDS
AAATGATCAAGGGTGAAAAG+GGG 0.646708 3_3:-66593844 Msa0466060:CDS
ATATCTTGTAAGAAATATGG+TGG 0.651465 3_3:-66596471 Msa0466060:exon
CCATTCTAGATGGACATCCA+AGG 0.651684 3_3:+66594612 None:intergenic
TCATTGTAAGAAGAACCTCC+TGG 0.656049 3_3:+66593764 None:intergenic
ACTTGCACATCCATCAGTTG+GGG 0.656754 3_3:-66594050 Msa0466060:CDS
AATGGTACACAAACTACATG+AGG 0.663412 3_3:+66596422 None:intergenic
AGGTATATAAGCACAACTTG+GGG 0.681367 3_3:-66593926 Msa0466060:CDS
GTAGAAGCTGCTAAACCAGG+AGG 0.695811 3_3:-66593779 Msa0466060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATAAATATCAAATG+TGG - chr3_3:66594372-66594391 Msa0466060:CDS 10.0%
!! TAAAAATAAATATCAAATGT+GGG - chr3_3:66594373-66594392 Msa0466060:CDS 10.0%
!! ATAAAATATTCAATCAAAAT+TGG + chr3_3:66595210-66595229 None:intergenic 10.0%
!!! ATTTTATGAACTAAATTAAC+TGG - chr3_3:66594062-66594081 Msa0466060:CDS 15.0%
!!! AAACTAAACTCTTTTAAATA+AGG - chr3_3:66594278-66594297 Msa0466060:CDS 15.0%
!!! TTAAGAAATTTTGTTTTTGT+TGG + chr3_3:66594334-66594353 None:intergenic 15.0%
!! TTAAAAAAGAAAAATCTCAT+CGG - chr3_3:66594436-66594455 Msa0466060:CDS 15.0%
!!! TGAATTAATTCGATTTTTTA+TGG - chr3_3:66594746-66594765 Msa0466060:intron 15.0%
!!! AGTAAAATTGGTTTAATATA+AGG + chr3_3:66594870-66594889 None:intergenic 15.0%
!! TTGATAGAAATAAGTAAAAT+TGG + chr3_3:66594882-66594901 None:intergenic 15.0%
!! TAAGTTTCAATTCAAATTAT+TGG + chr3_3:66595098-66595117 None:intergenic 15.0%
!! AATAATTTGAATTGAAACTT+AGG - chr3_3:66595097-66595116 Msa0466060:intron 15.0%
!! ATAATTTGAATTGAAACTTA+GGG - chr3_3:66595098-66595117 Msa0466060:intron 15.0%
!! ATGATTTAACATGTATTAAA+TGG - chr3_3:66595593-66595612 Msa0466060:intron 15.0%
!! TCAGTGATATATATTAATTA+TGG - chr3_3:66595637-66595656 Msa0466060:intron 15.0%
!! TTAATTATTTCCACAAATAA+TGG - chr3_3:66596291-66596310 Msa0466060:CDS 15.0%
!! ATGATAATTAAGTATAGTGA+AGG + chr3_3:66593406-66593425 None:intergenic 20.0%
!! TACATATCTTGTAAGAAATA+TGG - chr3_3:66593425-66593444 Msa0466060:three_prime_UTR 20.0%
!! TATATAATAGATGTAACTTG+AGG + chr3_3:66593798-66593817 None:intergenic 20.0%
!! GTTACATCTATTATATATGA+TGG - chr3_3:66593801-66593820 Msa0466060:CDS 20.0%
!!! TATTATATATGATGGACTTA+TGG - chr3_3:66593809-66593828 Msa0466060:CDS 20.0%
!!! ATTATATATGATGGACTTAT+GGG - chr3_3:66593810-66593829 Msa0466060:CDS 20.0%
!! TACTAAAAATTGAGACATAT+AGG - chr3_3:66593999-66594018 Msa0466060:CDS 20.0%
!!! GACTATTTTAACTTTTTTTG+AGG - chr3_3:66594126-66594145 Msa0466060:CDS 20.0%
!!! TATTTTAACTTTTTTTGAGG+TGG - chr3_3:66594129-66594148 Msa0466060:CDS 20.0%
!!! ATCAATCTTTTGCTAATTTT+TGG + chr3_3:66594245-66594264 None:intergenic 20.0%
!!! TCTTTTTTAATAACTTCTGA+TGG + chr3_3:66594426-66594445 None:intergenic 20.0%
!!! AAAAGCATTCTTAAATTAGA+TGG + chr3_3:66594686-66594705 None:intergenic 20.0%
!! TGAACGTAAAAAATCAATAT+TGG + chr3_3:66595012-66595031 None:intergenic 20.0%
!! TAACTTATAATCAGATAAAG+AGG - chr3_3:66595145-66595164 Msa0466060:intron 20.0%
!! TTAATATATATCACTGAAGA+AGG + chr3_3:66595634-66595653 None:intergenic 20.0%
!!! AACATTTTAATGAATTTGCT+TGG - chr3_3:66595683-66595702 Msa0466060:intron 20.0%
!!! ACATTTTAATGAATTTGCTT+GGG - chr3_3:66595684-66595703 Msa0466060:intron 20.0%
!!! ATAGTAAATTACCATTTTTG+TGG - chr3_3:66595716-66595735 Msa0466060:intron 20.0%
!!! AGAATTTTTAGATGAAGTTA+AGG - chr3_3:66595786-66595805 Msa0466060:intron 20.0%
!!! TGATTTCTTTAGGTTATTAA+AGG - chr3_3:66596155-66596174 Msa0466060:CDS 20.0%
!! ATTATTTGTTCCATTATTTG+TGG + chr3_3:66596304-66596323 None:intergenic 20.0%
!! ATAATATATGTCTTCTACAA+AGG - chr3_3:66596319-66596338 Msa0466060:CDS 20.0%
!! AAAAAAAAAGACATGTGATA+TGG - chr3_3:66596374-66596393 Msa0466060:CDS 20.0%
! GAAGGAAATATTGTATGATT+TGG + chr3_3:66593388-66593407 None:intergenic 25.0%
! ATATCTTGTAAGAAATATGG+TGG - chr3_3:66593428-66593447 Msa0466060:three_prime_UTR 25.0%
!!! TTTTAGCTAATTGCATGAAA+GGG + chr3_3:66593524-66593543 None:intergenic 25.0%
!!! ATTTTAGCTAATTGCATGAA+AGG + chr3_3:66593525-66593544 None:intergenic 25.0%
! ATCAAACTATAACCTTTGTA+TGG + chr3_3:66593954-66593973 None:intergenic 25.0%
! TAAATAAGGCTATCAATCAT+TGG - chr3_3:66594292-66594311 Msa0466060:CDS 25.0%
! TCTTCACAAAAAATCTATAC+AGG - chr3_3:66594550-66594569 Msa0466060:CDS 25.0%
!! ATCAGATTTTACTTATCTCT+TGG - chr3_3:66594781-66594800 Msa0466060:intron 25.0%
!! TTTCTATCAAGAAAAAGTGT+TGG - chr3_3:66594892-66594911 Msa0466060:intron 25.0%
!!! GGGCAAATTTTTTTTTCAAT+TGG - chr3_3:66595118-66595137 Msa0466060:intron 25.0%
! GATGAAAGTTATATTACTGA+TGG - chr3_3:66595262-66595281 Msa0466060:intron 25.0%
!! AAAACTGATTTCATCTAATG+TGG + chr3_3:66595368-66595387 None:intergenic 25.0%
!!! TTAGATGAAATCAGTTTTGT+TGG - chr3_3:66595370-66595389 Msa0466060:intron 25.0%
!! AATTTTCCTGAAAAGGAAAA+TGG - chr3_3:66595538-66595557 Msa0466060:intron 25.0%
! TATTAAATGGTTAGACCAAT+GGG - chr3_3:66595606-66595625 Msa0466060:intron 25.0%
!!! CATTTTAATGAATTTGCTTG+GGG - chr3_3:66595685-66595704 Msa0466060:intron 25.0%
!!! ATTTTAATGAATTTGCTTGG+GGG - chr3_3:66595686-66595705 Msa0466060:intron 25.0%
!!! TACCATTTTTGTGGATAAAT+AGG - chr3_3:66595725-66595744 Msa0466060:intron 25.0%
! AAAAATTCTTGTGACAATGA+AGG + chr3_3:66595775-66595794 None:intergenic 25.0%
! ATAGAGGTTACATAATAACT+TGG - chr3_3:66595809-66595828 Msa0466060:intron 25.0%
! CTTCTTACAATGATTTCTTT+AGG - chr3_3:66596145-66596164 Msa0466060:CDS 25.0%
!! TTGCTTGTATTTCTAATTAG+AGG - chr3_3:66596402-66596421 Msa0466060:CDS 25.0%
!!! TCATTTGTTGTATGATGTAT+TGG - chr3_3:66596475-66596494 Msa0466060:exon 25.0%
!!! CATTTGTTGTATGATGTATT+GGG - chr3_3:66596476-66596495 Msa0466060:exon 25.0%
GCTAAAATCCTTAACAAACT+TGG - chr3_3:66593537-66593556 Msa0466060:three_prime_UTR 30.0%
GTTGAATTCATTGTTCACAA+AGG + chr3_3:66593574-66593593 None:intergenic 30.0%
AAACGTTTGGTAAAATCTCT+TGG - chr3_3:66593597-66593616 Msa0466060:three_prime_UTR 30.0%
! TCTTGGACATGACTTTTTAA+AGG - chr3_3:66593614-66593633 Msa0466060:three_prime_UTR 30.0%
! CTTGGACATGACTTTTTAAA+GGG - chr3_3:66593615-66593634 Msa0466060:three_prime_UTR 30.0%
ATAGTCTCAAACCTAAAATC+TGG + chr3_3:66593645-66593664 None:intergenic 30.0%
AGAAATATGCTTCCATACAA+AGG - chr3_3:66593939-66593958 Msa0466060:CDS 30.0%
TTTGTTGGAAGATTCAGAAT+AGG + chr3_3:66594319-66594338 None:intergenic 30.0%
! TTCGGATATTTTTCATTCCT+GGG + chr3_3:66595315-66595334 None:intergenic 30.0%
! ATTCGGATATTTTTCATTCC+TGG + chr3_3:66595316-66595335 None:intergenic 30.0%
!!! GAAATCAGTTTTGTTGGTTT+TGG - chr3_3:66595376-66595395 Msa0466060:intron 30.0%
GTTGTATATGTTGGGATTTA+TGG + chr3_3:66595491-66595510 None:intergenic 30.0%
AATCCCAACATATACAACAT+TGG - chr3_3:66595493-66595512 Msa0466060:intron 30.0%
TTGTTACCTAGAAATTGAAG+TGG + chr3_3:66595520-66595539 None:intergenic 30.0%
! AGGTAACAATTTTCCTGAAA+AGG - chr3_3:66595531-66595550 Msa0466060:intron 30.0%
! TTGAATCCATTTTCCTTTTC+AGG + chr3_3:66595547-66595566 None:intergenic 30.0%
GTATTAAATGGTTAGACCAA+TGG - chr3_3:66595605-66595624 Msa0466060:intron 30.0%
TTAGATGAAGTTAAGGATAG+AGG - chr3_3:66595793-66595812 Msa0466060:intron 30.0%
!! TATTTTTGACTCATTGTGGT+TGG - chr3_3:66595872-66595891 Msa0466060:intron 30.0%
TAGGTATATAAGCACAACTT+GGG - chr3_3:66595972-66595991 Msa0466060:CDS 30.0%
TGAGAGAAAAATGTGTTGAA+TGG - chr3_3:66596085-66596104 Msa0466060:CDS 30.0%
GTCTAGCATCTTTAATGATA+AGG - chr3_3:66596210-66596229 Msa0466060:CDS 30.0%
ATATGTTTCTCCATATGATG+TGG - chr3_3:66596238-66596257 Msa0466060:CDS 30.0%
! TCCATATGATGTGGATTATT+TGG - chr3_3:66596247-66596266 Msa0466060:CDS 30.0%
TCCAAATAATCCACATCATA+TGG + chr3_3:66596251-66596270 None:intergenic 30.0%
! TGTGTAATTTGTGTTATGTG+TGG - chr3_3:66596448-66596467 Msa0466060:CDS 30.0%
AATGGTACACAAACTACATG+AGG + chr3_3:66593480-66593499 None:intergenic 35.0%
!! TGTGGAAACCAAGTTTGTTA+AGG + chr3_3:66593548-66593567 None:intergenic 35.0%
CATTGTTCACAAAGGTTATG+TGG + chr3_3:66593566-66593585 None:intergenic 35.0%
TGAATTCAACCACAAACGTT+TGG - chr3_3:66593584-66593603 Msa0466060:three_prime_UTR 35.0%
! GAGATTTTACCAAACGTTTG+TGG + chr3_3:66593596-66593615 None:intergenic 35.0%
! TAAAGGGTCAACCAGATTTT+AGG - chr3_3:66593631-66593650 Msa0466060:three_prime_UTR 35.0%
! TGTGTAGCATTTTCATCTGA+TGG + chr3_3:66593684-66593703 None:intergenic 35.0%
GAAAATGCTACACAAAGCAT+TGG - chr3_3:66593690-66593709 Msa0466060:three_prime_UTR 35.0%
GGTTGTAGGAAACATTGTTA+TGG - chr3_3:66593726-66593745 Msa0466060:CDS 35.0%
!! ATTTGCTGTAGATGTTGCAA+AGG - chr3_3:66593833-66593852 Msa0466060:CDS 35.0%
TGTAGATGTTGCAAAGGATT+TGG - chr3_3:66593839-66593858 Msa0466060:CDS 35.0%
GTAGATGTTGCAAAGGATTT+GGG - chr3_3:66593840-66593859 Msa0466060:CDS 35.0%
TCTTCGTAGTTATATGTGCT+TGG - chr3_3:66594460-66594479 Msa0466060:CDS 35.0%
TGGTCGAATCTCAGATTATT+AGG - chr3_3:66594801-66594820 Msa0466060:intron 35.0%
GGTCGAATCTCAGATTATTA+GGG - chr3_3:66594802-66594821 Msa0466060:intron 35.0%
!! AAAAGTGTTGGTGTAACTGA+TGG - chr3_3:66594904-66594923 Msa0466060:intron 35.0%
TTATATTACTGATGGCTCCT+TGG - chr3_3:66595270-66595289 Msa0466060:intron 35.0%
! TCGGATATTTTTCATTCCTG+GGG + chr3_3:66595314-66595333 None:intergenic 35.0%
TTGTTCTAACAAAGCTTGGA+AGG + chr3_3:66595345-66595364 None:intergenic 35.0%
TGAAGTTCTTGATGCTCTTA+TGG - chr3_3:66595465-66595484 Msa0466060:intron 35.0%
GGACCAATGTTGTATATGTT+GGG + chr3_3:66595499-66595518 None:intergenic 35.0%
TGGACCAATGTTGTATATGT+TGG + chr3_3:66595500-66595519 None:intergenic 35.0%
ATTGGTCCACTTCAATTTCT+AGG - chr3_3:66595511-66595530 Msa0466060:intron 35.0%
! GAAAATGGATTCAAATCCGA+TGG - chr3_3:66595553-66595572 Msa0466060:intron 35.0%
GGCCTATTTATCCACAAAAA+TGG + chr3_3:66595730-66595749 None:intergenic 35.0%
! TAAATAGGCCAGATTTGGTA+AGG - chr3_3:66595740-66595759 Msa0466060:intron 35.0%
! AAATAGGCCAGATTTGGTAA+GGG - chr3_3:66595741-66595760 Msa0466060:intron 35.0%
!! TCACTTGAGAGTATTTCTGA+AGG - chr3_3:66595901-66595920 Msa0466060:intron 35.0%
CTGAGCAACAAACAAATTGT+AGG - chr3_3:66595953-66595972 Msa0466060:intron 35.0%
GTAGGTATATAAGCACAACT+TGG - chr3_3:66595971-66595990 Msa0466060:CDS 35.0%
AGGTATATAAGCACAACTTG+GGG - chr3_3:66595973-66595992 Msa0466060:CDS 35.0%
ACTTGTGAAGGAAATGATCA+AGG - chr3_3:66596044-66596063 Msa0466060:CDS 35.0%
CTTGTGAAGGAAATGATCAA+GGG - chr3_3:66596045-66596064 Msa0466060:CDS 35.0%
GAAATGATCAAGGGTGAAAA+GGG - chr3_3:66596054-66596073 Msa0466060:CDS 35.0%
AAATGATCAAGGGTGAAAAG+GGG - chr3_3:66596055-66596074 Msa0466060:CDS 35.0%
! ATTTGGAGTAGAAGAATGCT+TGG - chr3_3:66596264-66596283 Msa0466060:CDS 35.0%
! TTTGGAGTAGAAGAATGCTT+GGG - chr3_3:66596265-66596284 Msa0466060:CDS 35.0%
! AGGTTTGAGACTATACCAGA+TGG - chr3_3:66593651-66593670 Msa0466060:three_prime_UTR 40.0%
! GTAGCATTTTCATCTGATGG+TGG + chr3_3:66593681-66593700 None:intergenic 40.0%
!! AATGCTACACAAAGCATTGG+TGG - chr3_3:66593693-66593712 Msa0466060:three_prime_UTR 40.0%
TTCTCCACAAGCTCTTTCAA+TGG + chr3_3:66593753-66593772 None:intergenic 40.0%
! GCATTGCAGAGCAACAATTT+TGG - chr3_3:66593862-66593881 Msa0466060:CDS 40.0%
TCTTACCCTCCAGATTCTAA+GGG + chr3_3:66594835-66594854 None:intergenic 40.0%
TTCTTACCCTCCAGATTCTA+AGG + chr3_3:66594836-66594855 None:intergenic 40.0%
GTGGTTGTTCTAACAAAGCT+TGG + chr3_3:66595349-66595368 None:intergenic 40.0%
!!! CAGTTTTGTTGGTTTTGGCT+TGG - chr3_3:66595381-66595400 Msa0466060:intron 40.0%
TTTCCAAAGACTTGCACCAT+CGG + chr3_3:66595572-66595591 None:intergenic 40.0%
GTGGATAAATAGGCCAGATT+TGG - chr3_3:66595735-66595754 Msa0466060:intron 40.0%
! AATAGGCCAGATTTGGTAAG+GGG - chr3_3:66595742-66595761 Msa0466060:intron 40.0%
! GATTTTCCCCTTACCAAATC+TGG + chr3_3:66595751-66595770 None:intergenic 40.0%
TACTTGCACATCCATCAGTT+GGG - chr3_3:66595848-66595867 Msa0466060:intron 40.0%
GTCAAAAATACCCCAACTGA+TGG + chr3_3:66595862-66595881 None:intergenic 40.0%
!! GGGGTATTTTTGACTCATTG+TGG - chr3_3:66595868-66595887 Msa0466060:intron 40.0%
TCTGAAGGTAAGCCTATGAT+TGG - chr3_3:66595916-66595935 Msa0466060:intron 40.0%
AAGGTAAGCCTATGATTGGT+TGG - chr3_3:66595920-66595939 Msa0466060:intron 40.0%
AAGAAAGGCCAACCAATCAT+AGG + chr3_3:66595931-66595950 None:intergenic 40.0%
! GTTTGTTGCTCAGCAAAGAA+AGG + chr3_3:66595946-66595965 None:intergenic 40.0%
ATAAGCACAACTTGGGGAAT+AGG - chr3_3:66595979-66595998 Msa0466060:CDS 40.0%
TAAGCACAACTTGGGGAATA+GGG - chr3_3:66595980-66595999 Msa0466060:CDS 40.0%
GGGAATAGGGATGGATATTA+AGG - chr3_3:66595993-66596012 Msa0466060:CDS 40.0%
GGATGATGTGAAAAGAGAAG+AGG - chr3_3:66596014-66596033 Msa0466060:CDS 40.0%
AGAGGTAACTGAACTTGTGA+AGG - chr3_3:66596032-66596051 Msa0466060:CDS 40.0%
GGAAATGATCAAGGGTGAAA+AGG - chr3_3:66596053-66596072 Msa0466060:CDS 40.0%
TCATTGTAAGAAGAACCTCC+TGG + chr3_3:66596138-66596157 None:intergenic 40.0%
TGTGTACCATTTCCAGCACA+AGG - chr3_3:66593489-66593508 Msa0466060:three_prime_UTR 45.0%
!! AGCATTGGTGGACTTGTTGA+AGG - chr3_3:66593705-66593724 Msa0466060:exon 45.0%
!! GTGGACTTGTTGAAGGTTGT+AGG - chr3_3:66593712-66593731 Msa0466060:exon 45.0%
TGGTCCATTGAAAGAGCTTG+TGG - chr3_3:66593746-66593765 Msa0466060:CDS 45.0%
CAACACGATGACTTCACAAG+AGG + chr3_3:66594513-66594532 None:intergenic 45.0%
CTCTTCCCTTAGAATCTGGA+GGG - chr3_3:66594827-66594846 Msa0466060:intron 45.0%
CCATTCTAGATGGACATCCA+AGG + chr3_3:66595290-66595309 None:intergenic 45.0%
CCTTGGATGTCCATCTAGAA+TGG - chr3_3:66595287-66595306 Msa0466060:intron 45.0%
AGCTTGGAAGGTCTCTCATT+CGG + chr3_3:66595333-66595352 None:intergenic 45.0%
AATCCGATGGTGCAAGTCTT+TGG - chr3_3:66595566-66595585 Msa0466060:intron 45.0%
TCACTGAAGAAGGTTCCCAT+TGG + chr3_3:66595624-66595643 None:intergenic 45.0%
!! TGTGCAAGTACTTGGCTTTG+AGG + chr3_3:66595838-66595857 None:intergenic 45.0%
! CTGATGGATGTGCAAGTACT+TGG + chr3_3:66595846-66595865 None:intergenic 45.0%
GTACTTGCACATCCATCAGT+TGG - chr3_3:66595847-66595866 Msa0466060:intron 45.0%
ACTTGCACATCCATCAGTTG+GGG - chr3_3:66595849-66595868 Msa0466060:intron 45.0%
GTAGTAGAAGCTGCTAAACC+AGG - chr3_3:66596117-66596136 Msa0466060:CDS 45.0%
TATGCTCGGGTCACTTACAA+TGG + chr3_3:66596516-66596535 None:intergenic 45.0%
TTGTAAGTGACCCGAGCATA+TGG - chr3_3:66596516-66596535 Msa0466060:five_prime_UTR 45.0%
TGTAAGTGACCCGAGCATAT+GGG - chr3_3:66596517-66596536 Msa0466060:five_prime_UTR 45.0%
!!! ATTTTTATTATCATTATTTA+TGG + chr3_3:66594360-66594379 None:intergenic 5.0%
!! GTTTAAATTTATTTATTATT+CGG - chr3_3:66594582-66594601 Msa0466060:CDS 5.0%
!! TTTAAATTTATTTATTATTC+GGG - chr3_3:66594583-66594602 Msa0466060:CDS 5.0%
!!! TTTTTTAATTATTTTATCAA+AGG + chr3_3:66596353-66596372 None:intergenic 5.0%
ACGTGACCTTGTGCTGGAAA+TGG + chr3_3:66593498-66593517 None:intergenic 50.0%
!! TCTGATGGTGGCAAACCATC+TGG + chr3_3:66593669-66593688 None:intergenic 50.0%
! TTTTGGACTGCCTCTGCTTG+TGG - chr3_3:66593879-66593898 Msa0466060:CDS 50.0%
TTTGGACTGCCTCTGCTTGT+GGG - chr3_3:66593880-66593899 Msa0466060:CDS 50.0%
GGTCCTCTTCCCTTAGAATC+TGG - chr3_3:66594823-66594842 Msa0466060:intron 50.0%
! CCTCCAGATTCTAAGGGAAG+AGG + chr3_3:66594829-66594848 None:intergenic 50.0%
CCTCTTCCCTTAGAATCTGG+AGG - chr3_3:66594826-66594845 Msa0466060:intron 50.0%
TTCCTGGGGTCCATTCTAGA+TGG + chr3_3:66595300-66595319 None:intergenic 50.0%
CACAACTTGGGGAATAGGGA+TGG - chr3_3:66595984-66596003 Msa0466060:CDS 50.0%
GTAGAAGCTGCTAAACCAGG+AGG - chr3_3:66596120-66596139 Msa0466060:CDS 50.0%
CTCGGGTCACTTACAATGGT+TGG + chr3_3:66596512-66596531 None:intergenic 50.0%
GGGTTTACGTGACCTTGTGC+TGG + chr3_3:66593504-66593523 None:intergenic 55.0%
! TGCCTCTGCTTGTGGGTTGA+TGG - chr3_3:66593887-66593906 Msa0466060:CDS 55.0%
!! GCCTCTGCTTGTGGGTTGAT+GGG - chr3_3:66593888-66593907 Msa0466060:CDS 55.0%
TCCCATCAACCCACAAGCAG+AGG + chr3_3:66593892-66593911 None:intergenic 55.0%
! GTCCATCTAGAATGGACCCC+AGG - chr3_3:66595295-66595314 Msa0466060:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 66593377 66596544 66593377 ID=Msa0466060;Name=Msa0466060
chr3_3 mRNA 66593377 66596544 66593377 ID=Msa0466060-mRNA-1;Parent=Msa0466060;Name=Msa0466060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=67|1|1|1|1|1|2|338|486
chr3_3 exon 66593377 66594658 66593377 ID=Msa0466060-mRNA-1:exon:15147;Parent=Msa0466060-mRNA-1
chr3_3 exon 66595961 66596544 66595961 ID=Msa0466060-mRNA-1:exon:15146;Parent=Msa0466060-mRNA-1
chr3_3 five_prime_UTR 66596478 66596544 66596478 ID=Msa0466060-mRNA-1:five_prime_utr;Parent=Msa0466060-mRNA-1
chr3_3 CDS 66595961 66596477 66595961 ID=Msa0466060-mRNA-1:cds;Parent=Msa0466060-mRNA-1
chr3_3 CDS 66593715 66594658 66593715 ID=Msa0466060-mRNA-1:cds;Parent=Msa0466060-mRNA-1
chr3_3 three_prime_UTR 66593377 66593714 66593377 ID=Msa0466060-mRNA-1:three_prime_utr;Parent=Msa0466060-mRNA-1
Gene Sequence

>Msa0466060

ATGGTGGTGTCAGTGTTGTCATACTCACAAAAGCCTCATGTAGTTTGTGTACCATTTCCAGCACAAGGTCACGTAAACCCTTTCATGCAATTAGCTAAAATCCTTAACAAACTTGGTTTCCACATAACCTTTGTGAACAATGAATTCAACCACAAACGTTTGGTAAAATCTCTTGGACATGACTTTTTAAAGGGTCAACCAGATTTTAGGTTTGAGACTATACCAGATGGTTTGCCACCATCAGATGAAAATGCTACACAAAGCATTGGTGGACTTGTTGAAGGTTGTAGGAAACATTGTTATGGTCCATTGAAAGAGCTTGTGGAGAATCTTAACAATTCTTCAGAAGTTCCTCAAGTTACATCTATTATATATGATGGACTTATGGGATTTGCTGTAGATGTTGCAAAGGATTTGGGCATTGCAGAGCAACAATTTTGGACTGCCTCTGCTTGTGGGTTGATGGGATATTTGCAATTTGATGAGCTTATCAAAAGAAATATGCTTCCATACAAAGATGAAAGTTATATTACTGATGGCTCCTTGGATGTCCATCTAGAATGGACCCCAGGAATGAAAAATATCCGAATGAGAGACCTTCCAAGCTTTGTTAGAACAACCACATTAGATGAAATCAGTTTTGTTGGTTTTGGCTTGGAAGCTCAACAATGTATGAAATCATCAGCAATCATAATTAACACAGTCAAAGAATTAGAAAGTGAAGTTCTTGATGCTCTTATGGCCATAAATCCCAACATATACAACATTGGTCCACTTCAATTTCTAGGTAACAATTTTCCTGAAAAGGAAAATGGATTCAAATCCGATGGTGCAAGTCTTTGGAAAAATGATTTAACATGTATTAAATGGTTAGACCAATGGGAACCTTCTTCAGTGATATATATTAATTATGGAAGTATAGCTGTGATGAGTGAGAAACATTTTAATGAATTTGCTTGGGGGTTAGCAAATAGTAAATTACCATTTTTGTGGATAAATAGGCCAGATTTGGTAAGGGGAAAATCTCCTTCATTGTCACAAGAATTTTTAGATGAAGTTAAGGATAGAGGTTACATAATAACTTGGTGTCCTCAAAGCCAAGTACTTGCACATCCATCAGTTGGGGTATTTTTGACTCATTGTGGTTGGAATTCATCACTTGAGAGTATTTCTGAAGGTAAGCCTATGATTGGTTGGCCTTTCTTTGCTGAGCAACAAACAAATTGTAGGTATATAAGCACAACTTGGGGAATAGGGATGGATATTAAGGATGATGTGAAAAGAGAAGAGGTAACTGAACTTGTGAAGGAAATGATCAAGGGTGAAAAGGGGAAGAAAATGAGAGAAAAATGTGTTGAATGGAAAAAGAAAGTAGTAGAAGCTGCTAAACCAGGAGGTTCTTCTTACAATGATTTCTTTAGGTTATTAAAGGATGCTTATCATTGTGATGCTAGTGTTTGA
Protein sequence

>Msa0466060

MVVSVLSYSQKPHVVCVPFPAQGHVNPFMQLAKILNKLGFHITFVNNEFNHKRLVKSLGHDFLKGQPDFRFETIPDGLPPSDENATQSIGGLVEGCRKHCYGPLKELVENLNNSSEVPQVTSIIYDGLMGFAVDVAKDLGIAEQQFWTASACGLMGYLQFDELIKRNMLPYKDESYITDGSLDVHLEWTPGMKNIRMRDLPSFVRTTTLDEISFVGFGLEAQQCMKSSAIIINTVKELESEVLDALMAINPNIYNIGPLQFLGNNFPEKENGFKSDGASLWKNDLTCIKWLDQWEPSSVIYINYGSIAVMSEKHFNEFAWGLANSKLPFLWINRPDLVRGKSPSLSQEFLDEVKDRGYIITWCPQSQVLAHPSVGVFLTHCGWNSSLESISEGKPMIGWPFFAEQQTNCRYISTTWGIGMDIKDDVKREEVTELVKEMIKGEKGKKMREKCVEWKKKVVEAAKPGGSSYNDFFRLLKDAYHCDASV*