Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191190 | KEH36513.1 | 93.487 | 261 | 13 | 2 | 1 | 260 | 1 | 258 | 2.28e-164 | 465 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191190 | A0A072V590 | 93.487 | 261 | 13 | 2 | 1 | 260 | 1 | 258 | 1.09e-164 | 465 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011720 | Msa0191190 | 0.807020 | 6.199161e-50 | -8.615850e-47 |
| Msa0012440 | Msa0191190 | 0.829598 | 4.706254e-55 | -8.615850e-47 |
| Msa0050730 | Msa0191190 | 0.834956 | 2.220400e-56 | -8.615850e-47 |
| Msa0050760 | Msa0191190 | 0.828920 | 6.875405e-55 | -8.615850e-47 |
| Msa0057240 | Msa0191190 | 0.816409 | 5.614376e-52 | -8.615850e-47 |
| Msa0105340 | Msa0191190 | 0.809249 | 2.077639e-50 | -8.615850e-47 |
| Msa0105420 | Msa0191190 | 0.841620 | 4.255718e-58 | -8.615850e-47 |
| Msa0140910 | Msa0191190 | 0.836878 | 7.226111e-57 | -8.615850e-47 |
| Msa0149560 | Msa0191190 | 0.823163 | 1.606015e-53 | -8.615850e-47 |
| Msa0151690 | Msa0191190 | 0.817687 | 2.897196e-52 | -8.615850e-47 |
| Msa0185480 | Msa0191190 | 0.817746 | 2.811037e-52 | -8.615850e-47 |
| Msa0191190 | Msa0203170 | 0.818594 | 1.806615e-52 | -8.615850e-47 |
| Msa0191190 | Msa0211010 | 0.819619 | 1.056193e-52 | -8.615850e-47 |
| Msa0191190 | Msa0217400 | 0.857721 | 1.345902e-62 | -8.615850e-47 |
| Msa0191190 | Msa0227510 | 0.805144 | 1.538220e-49 | -8.615850e-47 |
| Msa0191190 | Msa0235890 | 0.803146 | 4.005913e-49 | -8.615850e-47 |
| Msa0191190 | Msa0242480 | 0.804670 | 1.932450e-49 | -8.615850e-47 |
| Msa0191190 | Msa0246290 | 0.800363 | 1.492663e-48 | -8.615850e-47 |
| Msa0191190 | Msa0257250 | 0.823425 | 1.394632e-53 | -8.615850e-47 |
| Msa0191190 | Msa0284860 | 0.811342 | 7.345117e-51 | -8.615850e-47 |
| Msa0191190 | Msa0290650 | 0.813992 | 1.932520e-51 | -8.615850e-47 |
| Msa0191190 | Msa0292180 | 0.805185 | 1.508209e-49 | -8.615850e-47 |
| Msa0191190 | Msa0296560 | 0.845881 | 3.079764e-59 | -8.615850e-47 |
| Msa0191190 | Msa0311920 | 0.978155 | 3.076919e-145 | -8.615850e-47 |
| Msa0191190 | Msa0313990 | 0.803230 | 3.849257e-49 | -8.615850e-47 |
| Msa0191190 | Msa0316850 | 0.815087 | 1.106387e-51 | -8.615850e-47 |
| Msa0191190 | Msa0323610 | 0.806699 | 7.246893e-50 | -8.615850e-47 |
| Msa0191190 | Msa0323620 | 0.817318 | 3.509877e-52 | -8.615850e-47 |
| Msa0191190 | Msa0335040 | 0.850341 | 1.808315e-60 | -8.615850e-47 |
| Msa0191190 | Msa0371540 | 0.831481 | 1.628717e-55 | -8.615850e-47 |
| Msa0191190 | Msa0392070 | 0.800526 | 1.382981e-48 | -8.615850e-47 |
| Msa0191190 | Msa0419970 | 0.822272 | 2.588633e-53 | -8.615850e-47 |
| Msa0191190 | Msa0437710 | 0.806193 | 9.263609e-50 | -8.615850e-47 |
| Msa0191190 | Msa0466060 | 0.836356 | 9.818634e-57 | -8.615850e-47 |
| Msa0191190 | Msa0484690 | 0.827658 | 1.385636e-54 | -8.615850e-47 |
| Msa0191190 | Msa0490350 | 0.800137 | 1.659375e-48 | -8.615850e-47 |
| Msa0191190 | Msa0509970 | 0.805404 | 1.357147e-49 | -8.615850e-47 |
| Msa0191190 | Msa0514860 | 0.815110 | 1.093285e-51 | -8.615850e-47 |
| Msa0191190 | Msa0517340 | 0.828178 | 1.038820e-54 | -8.615850e-47 |
| Msa0191190 | Msa0581340 | 0.806583 | 7.665765e-50 | -8.615850e-47 |
| Msa0191190 | Msa0610590 | 0.803295 | 3.731817e-49 | -8.615850e-47 |
| Msa0191190 | Msa0620640 | 0.800926 | 1.145988e-48 | -8.615850e-47 |
| Msa0191190 | Msa0621890 | 0.805752 | 1.146965e-49 | -8.615850e-47 |
| Msa0191190 | Msa0647000 | 0.810926 | 9.040735e-51 | -8.615850e-47 |
| Msa0191190 | Msa0651190 | 0.808755 | 2.649883e-50 | -8.615850e-47 |
| Msa0191190 | Msa0694250 | 0.817116 | 3.896542e-52 | -8.615850e-47 |
| Msa0191190 | Msa0706370 | 0.819624 | 1.053434e-52 | -8.615850e-47 |
| Msa0191190 | Msa0754030 | 0.806187 | 9.293310e-50 | -8.615850e-47 |
| Msa0191190 | Msa0782330 | 0.801371 | 9.294384e-49 | -8.615850e-47 |
| Msa0191190 | Msa0792510 | 0.814154 | 1.780130e-51 | -8.615850e-47 |
| Msa0191190 | Msa0829560 | 0.960385 | 1.693894e-118 | -8.615850e-47 |
| Msa0191190 | Msa0833040 | 0.800836 | 1.195496e-48 | -8.615850e-47 |
| Msa0191190 | Msa0836190 | 0.803769 | 2.976785e-49 | -8.615850e-47 |
| Msa0191190 | Msa0870620 | 0.831017 | 2.118819e-55 | -8.615850e-47 |
| Msa0191190 | Msa0870690 | 0.809302 | 2.024089e-50 | -8.615850e-47 |
| Msa0191190 | Msa0893810 | 0.821195 | 4.593571e-53 | -8.615850e-47 |
| Msa0191190 | Msa0896210 | 0.803717 | 3.050643e-49 | -8.615850e-47 |
| Msa0191190 | Msa0896220 | 0.801379 | 9.256327e-49 | -8.615850e-47 |
| Msa0191190 | Msa0908170 | 0.815804 | 7.662487e-52 | -8.615850e-47 |
| Msa0191190 | Msa0944770 | 0.831569 | 1.549469e-55 | -8.615850e-47 |
| Msa0191190 | Msa0946320 | 0.817259 | 3.618098e-52 | -8.615850e-47 |
| Msa0191190 | Msa0993530 | 0.801980 | 6.968251e-49 | -8.615850e-47 |
| Msa0191190 | Msa1008490 | 0.800540 | 1.373564e-48 | -8.615850e-47 |
| Msa0191190 | Msa1009000 | 0.800371 | 1.487267e-48 | -8.615850e-47 |
| Msa0191190 | Msa1020710 | 0.815108 | 1.094449e-51 | -8.615850e-47 |
| Msa0191190 | Msa1036390 | 0.803612 | 3.207567e-49 | -8.615850e-47 |
| Msa0191190 | Msa1069300 | 0.801692 | 7.986584e-49 | -8.615850e-47 |
| Msa0191190 | Msa1087470 | 0.817251 | 3.632330e-52 | -8.615850e-47 |
| Msa0191190 | Msa1097430 | 0.815246 | 1.020111e-51 | -8.615850e-47 |
| Msa0191190 | Msa1104000 | 0.803256 | 3.802374e-49 | -8.615850e-47 |
| Msa0191190 | Msa1147570 | 0.812146 | 4.909246e-51 | -8.615850e-47 |
| Msa0191190 | Msa1185540 | 0.816432 | 5.547802e-52 | -8.615850e-47 |
| Msa0191190 | Msa1221260 | 0.809261 | 2.065160e-50 | -8.615850e-47 |
| Msa0191190 | Msa1233500 | 0.800214 | 1.600744e-48 | -8.615850e-47 |
| Msa0191190 | Msa1271300 | 0.810080 | 1.376911e-50 | -8.615850e-47 |
| Msa0191190 | Msa1278840 | 0.813233 | 2.838695e-51 | -8.615850e-47 |
| Msa0191190 | Msa1318240 | 0.814154 | 1.779794e-51 | -8.615850e-47 |
| Msa0191190 | Msa1327760 | 0.801322 | 9.509596e-49 | -8.615850e-47 |
| Msa0191190 | Msa1337340 | 0.809951 | 1.467710e-50 | -8.615850e-47 |
| Msa0191190 | Msa1343820 | 0.802157 | 6.409533e-49 | -8.615850e-47 |
| Msa0191190 | Msa1363890 | 0.823485 | 1.350131e-53 | -8.615850e-47 |
| Msa0191190 | Msa1365040 | -0.805014 | 1.637946e-49 | -8.615850e-47 |
| Msa0191190 | Msa1373950 | 0.807361 | 5.247824e-50 | -8.615850e-47 |
| Msa0191190 | Msa1374440 | 0.830281 | 3.208074e-55 | -8.615850e-47 |
| Msa0191190 | Msa1408790 | 0.822485 | 2.310182e-53 | -8.615850e-47 |
| Msa0191190 | Msa1419110 | 0.817375 | 3.407284e-52 | -8.615850e-47 |
| Msa0191190 | Msa1420060 | 0.802905 | 4.492748e-49 | -8.615850e-47 |
| Msa0191190 | Msa1422270 | 0.820246 | 7.592216e-53 | -8.615850e-47 |
| Msa0191190 | Msa1423450 | 0.831761 | 1.389841e-55 | -8.615850e-47 |
| Msa0191190 | Msa1429420 | 0.830744 | 2.471249e-55 | -8.615850e-47 |
| Msa0191190 | Msa1436040 | 0.819083 | 1.399326e-52 | -8.615850e-47 |
| Msa0191190 | Msa1439230 | 0.815741 | 7.913498e-52 | -8.615850e-47 |
| Msa0191190 | Msa1440600 | 0.829630 | 4.622572e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191190 | MtrunA17_Chr2g0281121 | 93.487 | 261 | 13 | 2 | 1 | 260 | 14 | 271 | 5.52e-168 | 465 |
| Msa0191190 | MtrunA17_Chr4g0048371 | 53.160 | 269 | 93 | 10 | 1 | 249 | 24 | 279 | 3.08e-47 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191190 | AT4G21500.1 | 34.979 | 243 | 100 | 7 | 17 | 240 | 12 | 215 | 3.55e-18 | 80.9 |
Find 41 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAAGTTGAAATCTAAAA+TGG | 0.203889 | 2_1:-6731824 | Msa0191190:CDS |
| TCGAGACCCACTTGAAAATT+TGG | 0.233268 | 2_1:+6731857 | None:intergenic |
| CACCGGAGAATATGAATTTC+CGG | 0.299531 | 2_1:-6731585 | Msa0191190:CDS |
| GAACTATCTGAATCAGATTC+AGG | 0.336496 | 2_1:+6731646 | None:intergenic |
| TTTCTTCACTCTTAGATCTC+TGG | 0.338598 | 2_1:+6731977 | None:intergenic |
| TTCATCGGAGAATGAGTTTC+CGG | 0.350752 | 2_1:-6731626 | Msa0191190:CDS |
| AGTTTCCGGCGATGGAGAAC+TGG | 0.362497 | 2_1:-6731612 | Msa0191190:CDS |
| GGCTTTAAGAGGAAGGCTTT+GGG | 0.375043 | 2_1:-6731517 | Msa0191190:CDS |
| TGGCTTTAAGAGGAAGGCTT+TGG | 0.384066 | 2_1:-6731518 | Msa0191190:CDS |
| GAGATCTAAGAGTGAAGAAA+AGG | 0.411423 | 2_1:-6731974 | Msa0191190:CDS |
| TTAATTGAGATAGCTCTTGA+TGG | 0.421762 | 2_1:-6731538 | Msa0191190:CDS |
| TCTAATGAGAATTGTGTTGC+TGG | 0.422953 | 2_1:-6731703 | Msa0191190:CDS |
| ACATTTCTCCGACGAAGCGC+AGG | 0.439702 | 2_1:-6731459 | Msa0191190:CDS |
| TAGCTCTTGATGGCTTTAAG+AGG | 0.465176 | 2_1:-6731528 | Msa0191190:CDS |
| TCACCAGTTCTAATTCTCAC+TGG | 0.478806 | 2_1:-6732036 | Msa0191190:CDS |
| GGAGAATGAGTTTCCGGCGA+TGG | 0.484875 | 2_1:-6731620 | Msa0191190:CDS |
| GAAAAGTTGAAATCTAAAAT+GGG | 0.488091 | 2_1:-6731823 | Msa0191190:CDS |
| CTCTATCTTCTTCATCCCAC+CGG | 0.498324 | 2_1:+6731566 | None:intergenic |
| GGCTTTGGGATTTCAGTTTG+AGG | 0.516822 | 2_1:-6731503 | Msa0191190:CDS |
| CACCGGAAATTCATATTCTC+CGG | 0.520892 | 2_1:+6731583 | None:intergenic |
| ATGGAACGTGAAAGCGCCGT+TGG | 0.537116 | 2_1:-6731761 | Msa0191190:CDS |
| GAAAACTCCCTGCGCTTCGT+CGG | 0.545300 | 2_1:+6731451 | None:intergenic |
| TCTTGATGGCTTTAAGAGGA+AGG | 0.545888 | 2_1:-6731524 | Msa0191190:CDS |
| GGGATGAAGAAGATAGAGAA+GGG | 0.548429 | 2_1:-6731561 | Msa0191190:CDS |
| GATGGAGAACTGGGACTCAC+CGG | 0.552428 | 2_1:-6731602 | Msa0191190:CDS |
| ACACCAGTGAGAATTAGAAC+TGG | 0.561591 | 2_1:+6732033 | None:intergenic |
| GAGTCCCAGTTCTCCATCGC+CGG | 0.564533 | 2_1:+6731607 | None:intergenic |
| GATGAGAATCAAGGTGCAGA+AGG | 0.566008 | 2_1:+6732092 | None:intergenic |
| TCTTCATATATAACTTCCAA+CGG | 0.567961 | 2_1:+6731745 | None:intergenic |
| AGGAAAATAGATGAGAATCA+AGG | 0.575079 | 2_1:+6732083 | None:intergenic |
| GTTTCCGGCGATGGAGAACT+GGG | 0.578488 | 2_1:-6731611 | Msa0191190:CDS |
| GGAAAACACCTCCTCCTCGC+CGG | 0.581509 | 2_1:+6731429 | None:intergenic |
| TTAATTCCAACTCAAATCAC+CGG | 0.596284 | 2_1:+6731408 | None:intergenic |
| CATTTCTCCGACGAAGCGCA+GGG | 0.607667 | 2_1:-6731458 | Msa0191190:CDS |
| TGGGATGAAGAAGATAGAGA+AGG | 0.615054 | 2_1:-6731562 | Msa0191190:CDS |
| CGGAGAATATGAATTTCCGG+TGG | 0.615835 | 2_1:-6731582 | Msa0191190:CDS |
| ATCTGATTCAGATAGTTCAT+CGG | 0.620524 | 2_1:-6731641 | Msa0191190:CDS |
| ATATGAAGATGAAGAAACAG+AGG | 0.620651 | 2_1:-6731731 | Msa0191190:CDS |
| GGGGAAAACAGAGGAAAATG+TGG | 0.620751 | 2_1:-6731896 | Msa0191190:CDS |
| GGAGAATATGAATTTCCGGT+GGG | 0.667099 | 2_1:-6731581 | Msa0191190:CDS |
| GTAATAATGCATGAAAACAG+AGG | 0.676002 | 2_1:+6732114 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAGATTTCAACTTTTCTT+CGG | + | chr2_1:6731751-6731770 | None:intergenic | 20.0% |
| !! | AGAAAAGTTGAAATCTAAAA+TGG | - | chr2_1:6731752-6731771 | Msa0191190:CDS | 20.0% |
| !!! | GAAAAGTTGAAATCTAAAAT+GGG | - | chr2_1:6731753-6731772 | Msa0191190:CDS | 20.0% |
| !!! | TTTAGATTTCAACTTTTCTT+CGG | + | chr2_1:6731751-6731770 | None:intergenic | 20.0% |
| !! | AGAAAAGTTGAAATCTAAAA+TGG | - | chr2_1:6731752-6731771 | Msa0191190:CDS | 20.0% |
| !!! | GAAAAGTTGAAATCTAAAAT+GGG | - | chr2_1:6731753-6731772 | Msa0191190:CDS | 20.0% |
| !! | ACTATTTTGCAGAATGAATA+AGG | + | chr2_1:6731516-6731535 | None:intergenic | 25.0% |
| !! | TTGATTTTTGTACTTCGTTT+TGG | - | chr2_1:6731570-6731589 | Msa0191190:CDS | 25.0% |
| ! | AGTGAAGAAAAGGAAAAATT+TGG | - | chr2_1:6731612-6731631 | Msa0191190:CDS | 25.0% |
| ! | TCTTCATATATAACTTCCAA+CGG | + | chr2_1:6731834-6731853 | None:intergenic | 25.0% |
| !! | ACTATTTTGCAGAATGAATA+AGG | + | chr2_1:6731516-6731535 | None:intergenic | 25.0% |
| !! | TTGATTTTTGTACTTCGTTT+TGG | - | chr2_1:6731570-6731589 | Msa0191190:CDS | 25.0% |
| ! | AGTGAAGAAAAGGAAAAATT+TGG | - | chr2_1:6731612-6731631 | Msa0191190:CDS | 25.0% |
| ! | TCTTCATATATAACTTCCAA+CGG | + | chr2_1:6731834-6731853 | None:intergenic | 25.0% |
| GTAATAATGCATGAAAACAG+AGG | + | chr2_1:6731465-6731484 | None:intergenic | 30.0% | |
| AGGAAAATAGATGAGAATCA+AGG | + | chr2_1:6731496-6731515 | None:intergenic | 30.0% | |
| ! | TTCATCTCTGTTTTCTTCAT+TGG | + | chr2_1:6731655-6731674 | None:intergenic | 30.0% |
| AGAAAACAGAGATGAAAAAC+AGG | - | chr2_1:6731659-6731678 | Msa0191190:CDS | 30.0% | |
| GAAAACAGAGATGAAAAACA+GGG | - | chr2_1:6731660-6731679 | Msa0191190:CDS | 30.0% | |
| AAAACAGAGATGAAAAACAG+GGG | - | chr2_1:6731661-6731680 | Msa0191190:CDS | 30.0% | |
| !!! | TCTTGACCAAATTTTCAAGT+GGG | - | chr2_1:6731713-6731732 | Msa0191190:CDS | 30.0% |
| ! | TTGATGAGTCTTTTGTTGAA+TGG | - | chr2_1:6731796-6731815 | Msa0191190:CDS | 30.0% |
| ATATGAAGATGAAGAAACAG+AGG | - | chr2_1:6731845-6731864 | Msa0191190:CDS | 30.0% | |
| ATCTGATTCAGATAGTTCAT+CGG | - | chr2_1:6731935-6731954 | Msa0191190:CDS | 30.0% | |
| TTAATTGAGATAGCTCTTGA+TGG | - | chr2_1:6732038-6732057 | Msa0191190:CDS | 30.0% | |
| TTAATTCCAACTCAAATCAC+CGG | + | chr2_1:6732171-6732190 | None:intergenic | 30.0% | |
| GTAATAATGCATGAAAACAG+AGG | + | chr2_1:6731465-6731484 | None:intergenic | 30.0% | |
| AGGAAAATAGATGAGAATCA+AGG | + | chr2_1:6731496-6731515 | None:intergenic | 30.0% | |
| ! | TTCATCTCTGTTTTCTTCAT+TGG | + | chr2_1:6731655-6731674 | None:intergenic | 30.0% |
| AGAAAACAGAGATGAAAAAC+AGG | - | chr2_1:6731659-6731678 | Msa0191190:CDS | 30.0% | |
| GAAAACAGAGATGAAAAACA+GGG | - | chr2_1:6731660-6731679 | Msa0191190:CDS | 30.0% | |
| AAAACAGAGATGAAAAACAG+GGG | - | chr2_1:6731661-6731680 | Msa0191190:CDS | 30.0% | |
| !!! | TCTTGACCAAATTTTCAAGT+GGG | - | chr2_1:6731713-6731732 | Msa0191190:CDS | 30.0% |
| ! | TTGATGAGTCTTTTGTTGAA+TGG | - | chr2_1:6731796-6731815 | Msa0191190:CDS | 30.0% |
| ATATGAAGATGAAGAAACAG+AGG | - | chr2_1:6731845-6731864 | Msa0191190:CDS | 30.0% | |
| ATCTGATTCAGATAGTTCAT+CGG | - | chr2_1:6731935-6731954 | Msa0191190:CDS | 30.0% | |
| TTAATTGAGATAGCTCTTGA+TGG | - | chr2_1:6732038-6732057 | Msa0191190:CDS | 30.0% | |
| TTAATTCCAACTCAAATCAC+CGG | + | chr2_1:6732171-6732190 | None:intergenic | 30.0% | |
| TTTCTTCACTCTTAGATCTC+TGG | + | chr2_1:6731602-6731621 | None:intergenic | 35.0% | |
| GAGATCTAAGAGTGAAGAAA+AGG | - | chr2_1:6731602-6731621 | Msa0191190:CDS | 35.0% | |
| !! | CTCTTGACCAAATTTTCAAG+TGG | - | chr2_1:6731712-6731731 | Msa0191190:CDS | 35.0% |
| TCTAATGAGAATTGTGTTGC+TGG | - | chr2_1:6731873-6731892 | Msa0191190:CDS | 35.0% | |
| GAACTATCTGAATCAGATTC+AGG | + | chr2_1:6731933-6731952 | None:intergenic | 35.0% | |
| TTTCTTCACTCTTAGATCTC+TGG | + | chr2_1:6731602-6731621 | None:intergenic | 35.0% | |
| GAGATCTAAGAGTGAAGAAA+AGG | - | chr2_1:6731602-6731621 | Msa0191190:CDS | 35.0% | |
| !! | CTCTTGACCAAATTTTCAAG+TGG | - | chr2_1:6731712-6731731 | Msa0191190:CDS | 35.0% |
| TCTAATGAGAATTGTGTTGC+TGG | - | chr2_1:6731873-6731892 | Msa0191190:CDS | 35.0% | |
| GAACTATCTGAATCAGATTC+AGG | + | chr2_1:6731933-6731952 | None:intergenic | 35.0% | |
| ! | TCACCAGTTCTAATTCTCAC+TGG | - | chr2_1:6731540-6731559 | Msa0191190:CDS | 40.0% |
| ACACCAGTGAGAATTAGAAC+TGG | + | chr2_1:6731546-6731565 | None:intergenic | 40.0% | |
| TGAAAAACAGGGGAAAACAG+AGG | - | chr2_1:6731671-6731690 | Msa0191190:CDS | 40.0% | |
| TCGAGACCCACTTGAAAATT+TGG | + | chr2_1:6731722-6731741 | None:intergenic | 40.0% | |
| TTCATCGGAGAATGAGTTTC+CGG | - | chr2_1:6731950-6731969 | Msa0191190:CDS | 40.0% | |
| CACCGGAGAATATGAATTTC+CGG | - | chr2_1:6731991-6732010 | Msa0191190:CDS | 40.0% | |
| CACCGGAAATTCATATTCTC+CGG | + | chr2_1:6731996-6732015 | None:intergenic | 40.0% | |
| GGAGAATATGAATTTCCGGT+GGG | - | chr2_1:6731995-6732014 | Msa0191190:CDS | 40.0% | |
| TGGGATGAAGAAGATAGAGA+AGG | - | chr2_1:6732014-6732033 | Msa0191190:CDS | 40.0% | |
| GGGATGAAGAAGATAGAGAA+GGG | - | chr2_1:6732015-6732034 | Msa0191190:CDS | 40.0% | |
| !! | TAGCTCTTGATGGCTTTAAG+AGG | - | chr2_1:6732048-6732067 | Msa0191190:CDS | 40.0% |
| !! | TCTTGATGGCTTTAAGAGGA+AGG | - | chr2_1:6732052-6732071 | Msa0191190:CDS | 40.0% |
| ! | TGTTTTCCGGTGATTTGAGT+TGG | - | chr2_1:6732162-6732181 | Msa0191190:CDS | 40.0% |
| ! | TCACCAGTTCTAATTCTCAC+TGG | - | chr2_1:6731540-6731559 | Msa0191190:CDS | 40.0% |
| ACACCAGTGAGAATTAGAAC+TGG | + | chr2_1:6731546-6731565 | None:intergenic | 40.0% | |
| TGAAAAACAGGGGAAAACAG+AGG | - | chr2_1:6731671-6731690 | Msa0191190:CDS | 40.0% | |
| TCGAGACCCACTTGAAAATT+TGG | + | chr2_1:6731722-6731741 | None:intergenic | 40.0% | |
| TTCATCGGAGAATGAGTTTC+CGG | - | chr2_1:6731950-6731969 | Msa0191190:CDS | 40.0% | |
| CACCGGAGAATATGAATTTC+CGG | - | chr2_1:6731991-6732010 | Msa0191190:CDS | 40.0% | |
| CACCGGAAATTCATATTCTC+CGG | + | chr2_1:6731996-6732015 | None:intergenic | 40.0% | |
| GGAGAATATGAATTTCCGGT+GGG | - | chr2_1:6731995-6732014 | Msa0191190:CDS | 40.0% | |
| TGGGATGAAGAAGATAGAGA+AGG | - | chr2_1:6732014-6732033 | Msa0191190:CDS | 40.0% | |
| GGGATGAAGAAGATAGAGAA+GGG | - | chr2_1:6732015-6732034 | Msa0191190:CDS | 40.0% | |
| !! | TAGCTCTTGATGGCTTTAAG+AGG | - | chr2_1:6732048-6732067 | Msa0191190:CDS | 40.0% |
| !! | TCTTGATGGCTTTAAGAGGA+AGG | - | chr2_1:6732052-6732071 | Msa0191190:CDS | 40.0% |
| ! | TGTTTTCCGGTGATTTGAGT+TGG | - | chr2_1:6732162-6732181 | Msa0191190:CDS | 40.0% |
| GATGAGAATCAAGGTGCAGA+AGG | + | chr2_1:6731487-6731506 | None:intergenic | 45.0% | |
| GGGGAAAACAGAGGAAAATG+TGG | - | chr2_1:6731680-6731699 | Msa0191190:CDS | 45.0% | |
| CGGAGAATATGAATTTCCGG+TGG | - | chr2_1:6731994-6732013 | Msa0191190:CDS | 45.0% | |
| CTCTATCTTCTTCATCCCAC+CGG | + | chr2_1:6732013-6732032 | None:intergenic | 45.0% | |
| !! | TGGCTTTAAGAGGAAGGCTT+TGG | - | chr2_1:6732058-6732077 | Msa0191190:CDS | 45.0% |
| !! | GGCTTTAAGAGGAAGGCTTT+GGG | - | chr2_1:6732059-6732078 | Msa0191190:CDS | 45.0% |
| !! | GGCTTTGGGATTTCAGTTTG+AGG | - | chr2_1:6732073-6732092 | Msa0191190:CDS | 45.0% |
| GATGAGAATCAAGGTGCAGA+AGG | + | chr2_1:6731487-6731506 | None:intergenic | 45.0% | |
| GGGGAAAACAGAGGAAAATG+TGG | - | chr2_1:6731680-6731699 | Msa0191190:CDS | 45.0% | |
| CGGAGAATATGAATTTCCGG+TGG | - | chr2_1:6731994-6732013 | Msa0191190:CDS | 45.0% | |
| CTCTATCTTCTTCATCCCAC+CGG | + | chr2_1:6732013-6732032 | None:intergenic | 45.0% | |
| !! | TGGCTTTAAGAGGAAGGCTT+TGG | - | chr2_1:6732058-6732077 | Msa0191190:CDS | 45.0% |
| !! | GGCTTTAAGAGGAAGGCTTT+GGG | - | chr2_1:6732059-6732078 | Msa0191190:CDS | 45.0% |
| !! | GGCTTTGGGATTTCAGTTTG+AGG | - | chr2_1:6732073-6732092 | Msa0191190:CDS | 45.0% |
| !! | ATGGAACGTGAAAGCGCCGT+TGG | - | chr2_1:6731815-6731834 | Msa0191190:CDS | 55.0% |
| GGAGAATGAGTTTCCGGCGA+TGG | - | chr2_1:6731956-6731975 | Msa0191190:CDS | 55.0% | |
| AGTTTCCGGCGATGGAGAAC+TGG | - | chr2_1:6731964-6731983 | Msa0191190:CDS | 55.0% | |
| GTTTCCGGCGATGGAGAACT+GGG | - | chr2_1:6731965-6731984 | Msa0191190:CDS | 55.0% | |
| GATGGAGAACTGGGACTCAC+CGG | - | chr2_1:6731974-6731993 | Msa0191190:CDS | 55.0% | |
| ACATTTCTCCGACGAAGCGC+AGG | - | chr2_1:6732117-6732136 | Msa0191190:CDS | 55.0% | |
| CATTTCTCCGACGAAGCGCA+GGG | - | chr2_1:6732118-6732137 | Msa0191190:CDS | 55.0% | |
| GAAAACTCCCTGCGCTTCGT+CGG | + | chr2_1:6732128-6732147 | None:intergenic | 55.0% | |
| ! | ACGAAGCGCAGGGAGTTTTC+CGG | - | chr2_1:6732128-6732147 | Msa0191190:CDS | 55.0% |
| !! | ATGGAACGTGAAAGCGCCGT+TGG | - | chr2_1:6731815-6731834 | Msa0191190:CDS | 55.0% |
| GGAGAATGAGTTTCCGGCGA+TGG | - | chr2_1:6731956-6731975 | Msa0191190:CDS | 55.0% | |
| AGTTTCCGGCGATGGAGAAC+TGG | - | chr2_1:6731964-6731983 | Msa0191190:CDS | 55.0% | |
| GTTTCCGGCGATGGAGAACT+GGG | - | chr2_1:6731965-6731984 | Msa0191190:CDS | 55.0% | |
| GATGGAGAACTGGGACTCAC+CGG | - | chr2_1:6731974-6731993 | Msa0191190:CDS | 55.0% | |
| ACATTTCTCCGACGAAGCGC+AGG | - | chr2_1:6732117-6732136 | Msa0191190:CDS | 55.0% | |
| CATTTCTCCGACGAAGCGCA+GGG | - | chr2_1:6732118-6732137 | Msa0191190:CDS | 55.0% | |
| GAAAACTCCCTGCGCTTCGT+CGG | + | chr2_1:6732128-6732147 | None:intergenic | 55.0% | |
| ! | ACGAAGCGCAGGGAGTTTTC+CGG | - | chr2_1:6732128-6732147 | Msa0191190:CDS | 55.0% |
| GAGTCCCAGTTCTCCATCGC+CGG | + | chr2_1:6731972-6731991 | None:intergenic | 60.0% | |
| GGAAAACACCTCCTCCTCGC+CGG | + | chr2_1:6732150-6732169 | None:intergenic | 60.0% | |
| !!! | GGCGAGGAGGAGGTGTTTTC+CGG | - | chr2_1:6732149-6732168 | Msa0191190:CDS | 60.0% |
| GAGTCCCAGTTCTCCATCGC+CGG | + | chr2_1:6731972-6731991 | None:intergenic | 60.0% | |
| GGAAAACACCTCCTCCTCGC+CGG | + | chr2_1:6732150-6732169 | None:intergenic | 60.0% | |
| !!! | GGCGAGGAGGAGGTGTTTTC+CGG | - | chr2_1:6732149-6732168 | Msa0191190:CDS | 60.0% |
| ! | CAGGGAGTTTTCCGGCGAGG+AGG | - | chr2_1:6732136-6732155 | Msa0191190:CDS | 65.0% |
| ! | GGAGTTTTCCGGCGAGGAGG+AGG | - | chr2_1:6732139-6732158 | Msa0191190:CDS | 65.0% |
| ! | CAGGGAGTTTTCCGGCGAGG+AGG | - | chr2_1:6732136-6732155 | Msa0191190:CDS | 65.0% |
| ! | GGAGTTTTCCGGCGAGGAGG+AGG | - | chr2_1:6732139-6732158 | Msa0191190:CDS | 65.0% |
| ! | GCGCAGGGAGTTTTCCGGCG+AGG | - | chr2_1:6732133-6732152 | Msa0191190:CDS | 70.0% |
| ! | GCGCAGGGAGTTTTCCGGCG+AGG | - | chr2_1:6732133-6732152 | Msa0191190:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 6731408 | 6732190 | 6731408 | ID=Msa0191190;Name=Msa0191190 |
| chr2_1 | mRNA | 6731408 | 6732190 | 6731408 | ID=Msa0191190-mRNA-1;Parent=Msa0191190;Name=Msa0191190-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|260 |
| chr2_1 | exon | 6731408 | 6732190 | 6731408 | ID=Msa0191190-mRNA-1:exon:3079;Parent=Msa0191190-mRNA-1 |
| chr2_1 | CDS | 6731408 | 6732190 | 6731408 | ID=Msa0191190-mRNA-1:cds;Parent=Msa0191190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
