AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0834600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0834600 MtrunA17_Chr5g0399991 98.925 93 1 0 1 93 182 274 8.83e-67 209
Msa0834600 MtrunA17_Chr5g0400001 98.925 93 1 0 1 93 180 272 2.05e-66 207
Msa0834600 MtrunA17_Chr4g0055281 82.796 93 16 0 1 93 171 263 3.00e-57 184
Msa0834600 MtrunA17_Chr6g0481031 65.591 93 32 0 1 93 199 291 1.88e-43 147
Msa0834600 MtrunA17_Chr8g0388651 63.953 86 31 0 1 86 172 257 3.41e-35 125
Msa0834600 MtrunA17_Chr4g0023601 52.688 93 43 1 1 92 106 198 4.29e-30 110
Msa0834600 MtrunA17_Chr2g0323051 56.989 93 39 1 1 92 179 271 7.59e-30 110
Msa0834600 MtrunA17_Chr7g0247631 55.914 93 40 1 1 92 358 450 3.34e-27 103
Msa0834600 MtrunA17_Chr2g0286431 43.820 89 50 0 1 89 172 260 3.78e-22 89.0
Msa0834600 MtrunA17_Chr5g0408851 47.312 93 48 1 1 92 311 403 5.86e-22 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0834600 AT4G17090.1 82.796 93 16 0 1 93 179 271 2.67e-55 179
Msa0834600 AT3G23920.1 67.742 93 30 0 1 93 199 291 7.63e-43 146
Msa0834600 AT4G15210.3 50.538 93 45 1 1 92 55 147 7.28e-30 110
Msa0834600 AT4G15210.4 50.538 93 45 1 1 92 55 147 7.28e-30 110
Msa0834600 AT4G15210.2 50.538 93 45 1 1 92 108 200 1.64e-29 108
Msa0834600 AT4G15210.1 50.538 93 45 1 1 92 108 200 1.80e-29 109
Msa0834600 AT2G32290.1 53.763 93 42 1 1 92 171 263 8.07e-29 108
Msa0834600 AT2G45880.1 55.914 93 40 1 1 92 341 433 1.86e-27 104
Msa0834600 AT5G55700.1 51.087 92 45 0 1 92 189 280 4.99e-27 102
Msa0834600 AT4G00490.1 55.914 93 40 1 1 92 188 280 5.01e-27 103
Msa0834600 AT5G55700.2 53.165 79 37 0 14 92 39 117 5.08e-24 93.6
Msa0834600 AT5G45300.3 46.237 93 49 1 1 92 362 454 1.62e-22 90.5
Msa0834600 AT5G45300.2 46.237 93 49 1 1 92 346 438 1.82e-22 90.1
Msa0834600 AT5G45300.1 46.237 93 49 1 1 92 348 440 1.89e-22 90.1
Msa0834600 AT5G18670.1 44.828 87 48 0 1 87 175 261 6.48e-22 88.6

Find 108 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATAGATTCACAGATTATT+TGG 0.131732 5_4:-7658068 Msa0834600:CDS
CCAATGAATTCCAGCTATTT+TGG 0.174268 5_4:+7657178 None:intergenic
TTTCAAGTTCCATCAGTTTC+AGG 0.197873 5_4:+7657628 None:intergenic
CTTTATGTTGGACACATTAA+AGG 0.225336 5_4:-7656723 Msa0834600:three_prime_UTR
AAGAAGTATATTGATTTATT+AGG 0.226783 5_4:-7656611 Msa0834600:three_prime_UTR
CTGGTTTACACAGACAAATT+AGG 0.254676 5_4:-7658193 Msa0834600:CDS
ACAGTATATGAGATCTTCTT+TGG 0.254734 5_4:-7657435 Msa0834600:intron
ACTTGAAAGTTTCCAGGAAT+TGG 0.275211 5_4:-7657613 Msa0834600:exon
TGGACACATTAAAGGAATTA+AGG 0.290030 5_4:-7656715 Msa0834600:three_prime_UTR
ATTGGTTAATCAAGTGAAAA+TGG 0.309530 5_4:-7656976 Msa0834600:three_prime_UTR
GGAACATGGAACACAGAATA+TGG 0.310195 5_4:-7657305 Msa0834600:three_prime_UTR
AATCAATTTCCTGAGGATAC+TGG 0.317015 5_4:-7657344 Msa0834600:three_prime_UTR
GGTTACTTGAGGGTGAAAAT+TGG 0.317311 5_4:-7656827 Msa0834600:three_prime_UTR
ACTAGTTTGGAATATGCTTT+TGG 0.320776 5_4:+7657217 None:intergenic
CTTTCAAAATCTGATTCATA+TGG 0.321608 5_4:-7656753 Msa0834600:three_prime_UTR
CACATATTTCATCATGTTGA+TGG 0.322340 5_4:-7656649 Msa0834600:three_prime_UTR
CATTGGAATTCTCCAATTCC+TGG 0.333977 5_4:+7657601 None:intergenic
GAAGCATCGGCAGGGGCAAT+TGG 0.336164 5_4:-7657413 Msa0834600:three_prime_UTR
CATGGGTGCTTGAAGAAATA+AGG 0.350399 5_4:-7658228 Msa0834600:CDS
GATGGAACTTGAAAGTTTCC+AGG 0.357141 5_4:-7657619 Msa0834600:exon
TTTGCTAGCATTTGTGCTAT+TGG 0.361586 5_4:+7657080 None:intergenic
GATAGATTCACAGATTATTT+GGG 0.369481 5_4:-7658067 Msa0834600:CDS
ACAGCCCAACGAGATGTATT+CGG 0.378732 5_4:+7658159 None:intergenic
AGATATGATTCAAGTGCTTA+TGG 0.392336 5_4:-7656906 Msa0834600:three_prime_UTR
TGGTTTACACAGACAAATTA+GGG 0.392347 5_4:-7658192 Msa0834600:CDS
AGCTGGAAGAACTCCTCTTC+AGG 0.398700 5_4:-7658119 Msa0834600:CDS
CATGCAACTGAATTAATTGC+AGG 0.402958 5_4:-7657137 Msa0834600:three_prime_UTR
ATGGAGATTTCTTCCTTGAA+TGG 0.404338 5_4:-7657286 Msa0834600:three_prime_UTR
TTGTCTGTGTAAACCAGCTC+AGG 0.410476 5_4:+7658199 None:intergenic
CCAAAATAGCTGGAATTCAT+TGG 0.410744 5_4:-7657178 Msa0834600:three_prime_UTR
CAGCCCAACGAGATGTATTC+GGG 0.415616 5_4:+7658160 None:intergenic
CAGGAAATTCAAGTGGGACT+AGG 0.423979 5_4:-7657682 Msa0834600:CDS
CTAGCATACCTTTACCTCCA+TGG 0.426539 5_4:-7658246 None:intergenic
ACGGAAGCTTCTCATGTAAT+CGG 0.432165 5_4:+7658090 None:intergenic
TCCACCAACATTATTGAGCT+TGG 0.439989 5_4:-7656552 Msa0834600:three_prime_UTR
ATTGTACCTTATCATAGCAT+TGG 0.441423 5_4:+7657584 None:intergenic
GGAGTTCTTCCAGCTAGAAC+AGG 0.442830 5_4:+7658127 None:intergenic
TGAAAATTGGAGGCAATTTG+TGG 0.446320 5_4:-7656814 Msa0834600:three_prime_UTR
TATATTGAATTTCACATGCA+TGG 0.449253 5_4:-7657048 Msa0834600:three_prime_UTR
AAACTATCTGCCAAAATAGC+TGG 0.452371 5_4:-7657188 Msa0834600:three_prime_UTR
TATGGGACTGATCTTTATGT+TGG 0.456464 5_4:-7656735 Msa0834600:three_prime_UTR
TCTTCTTTGGAAGCATCGGC+AGG 0.456856 5_4:-7657422 Msa0834600:three_prime_UTR
TAGCATACCTTTACCTCCAT+GGG 0.456896 5_4:-7658245 None:intergenic
AAGCATCGGCAGGGGCAATT+GGG 0.457944 5_4:-7657412 Msa0834600:three_prime_UTR
ACTTGATTAACCAATCCTTC+TGG 0.458432 5_4:+7656984 None:intergenic
TTTCACATGCATGGAAATGA+AGG 0.460751 5_4:-7657039 Msa0834600:three_prime_UTR
TTCAAGTTCCATCAGTTTCA+GGG 0.463846 5_4:+7657629 None:intergenic
GATCCAGTGCCTGTTCTAGC+TGG 0.467117 5_4:-7658136 Msa0834600:CDS
TCAAGCACCCATGGAGGTAA+AGG 0.469083 5_4:+7658238 None:intergenic
TTTCAAAATCTGATTCATAT+GGG 0.479314 5_4:-7656752 Msa0834600:three_prime_UTR
ATGGCAGGTGGTGAACTTGC+TGG 0.480529 5_4:-7656945 Msa0834600:three_prime_UTR
AAGTGGGACTAGGTCCTTGT+GGG 0.481159 5_4:-7657672 Msa0834600:CDS
CTTATTTCTTCAAGCACCCA+TGG 0.485962 5_4:+7658229 None:intergenic
TAATTGTTCACCAGAAGGAT+TGG 0.500260 5_4:-7656994 Msa0834600:three_prime_UTR
AGAATTCCAATGCTATGATA+AGG 0.506430 5_4:-7657590 Msa0834600:intron
GATTGTATTGACCAGAGTCA+TGG 0.512291 5_4:+7657363 None:intergenic
ATTGTATTGACCAGAGTCAT+GGG 0.514962 5_4:+7657364 None:intergenic
GTTTGCTTGAGTACCATTCA+AGG 0.524728 5_4:+7657273 None:intergenic
AATCCCGAATACATCTCGTT+GGG 0.532457 5_4:-7658163 Msa0834600:CDS
AGTGAAAATGGCAACAAAGA+TGG 0.533714 5_4:-7656964 Msa0834600:three_prime_UTR
TTCTTTGGAAGCATCGGCAG+GGG 0.535999 5_4:-7657420 Msa0834600:three_prime_UTR
TACTTGAGGGTGAAAATTGG+AGG 0.539264 5_4:-7656824 Msa0834600:three_prime_UTR
ACCAAGCTCAATAATGTTGG+TGG 0.545662 5_4:+7656551 None:intergenic
CATGCTAATTGTTCACCAGA+AGG 0.548824 5_4:-7656999 Msa0834600:three_prime_UTR
CCATCGTACCCTGAAACTGA+TGG 0.552334 5_4:-7657637 Msa0834600:CDS
GGGCAATTGGGAAGAAAGAG+TGG 0.553037 5_4:-7657400 Msa0834600:three_prime_UTR
ATAAACAAGAGGTTACTTGA+GGG 0.554309 5_4:-7656837 Msa0834600:three_prime_UTR
GAGATCTTCTTTGGAAGCAT+CGG 0.555888 5_4:-7657426 Msa0834600:three_prime_UTR
CTTATTTAAGAATAAACAAG+AGG 0.556225 5_4:-7656848 Msa0834600:three_prime_UTR
CTTCCAGCTAGAACAGGCAC+TGG 0.558435 5_4:+7658133 None:intergenic
TATAACACAAGGTTTCATGA+TGG 0.559816 5_4:-7657110 Msa0834600:three_prime_UTR
ACAAGTGGACCCCATGACTC+TGG 0.564843 5_4:-7657374 Msa0834600:three_prime_UTR
GAATCCCGAATACATCTCGT+TGG 0.567655 5_4:-7658164 Msa0834600:CDS
ACACAGACAAATTAGGGAGG+AGG 0.571216 5_4:-7658186 Msa0834600:CDS
CACACCAAGCTCAATAATGT+TGG 0.572891 5_4:+7656548 None:intergenic
AATAAACAAGAGGTTACTTG+AGG 0.572895 5_4:-7656838 Msa0834600:three_prime_UTR
AATAAGGAAGAACCCTGAGC+TGG 0.576300 5_4:-7658212 Msa0834600:CDS
AAAATGGCAACAAAGATGGC+AGG 0.576485 5_4:-7656960 Msa0834600:three_prime_UTR
TAATCGGAGTAGACCTGAAG+AGG 0.578784 5_4:+7658106 None:intergenic
GCACAAATGCTAGCAAAACA+TGG 0.581514 5_4:-7657074 Msa0834600:three_prime_UTR
AATAATCTGTGAATCTATCA+CGG 0.584013 5_4:+7658071 None:intergenic
AAGAAAGAGTGGGGAACAAG+TGG 0.590788 5_4:-7657389 Msa0834600:three_prime_UTR
CTTCTTTGGAAGCATCGGCA+GGG 0.592227 5_4:-7657421 Msa0834600:three_prime_UTR
ATGTTGATGGATCATGTGTA+TGG 0.592754 5_4:-7656636 Msa0834600:three_prime_UTR
TCATTTGCAGGAAATTCAAG+TGG 0.596130 5_4:-7657689 Msa0834600:intron
GGTGAACAATTAGCATGGCA+AGG 0.598767 5_4:+7657005 None:intergenic
ATATATTTATTCTAGACACT+CGG 0.604322 5_4:+7656512 None:intergenic
GGCAATTGGGAAGAAAGAGT+GGG 0.609694 5_4:-7657399 Msa0834600:three_prime_UTR
ACTTGCTGGTGAGAATGCAT+TGG 0.612219 5_4:-7656931 Msa0834600:three_prime_UTR
CATTTGCAGGAAATTCAAGT+GGG 0.613333 5_4:-7657688 Msa0834600:intron
TCAAGCAAACTTGTTGAACA+TGG 0.618498 5_4:-7657260 Msa0834600:three_prime_UTR
AAAAGCATATTCCAAACTAG+TGG 0.619168 5_4:-7657215 Msa0834600:three_prime_UTR
CCATCAGTTTCAGGGTACGA+TGG 0.627213 5_4:+7657637 None:intergenic
GGATATCTCAACTCCCCACA+AGG 0.632183 5_4:+7657658 None:intergenic
CAAGTGGGACTAGGTCCTTG+TGG 0.634549 5_4:-7657673 Msa0834600:CDS
AGTGGGACTAGGTCCTTGTG+GGG 0.637417 5_4:-7657671 Msa0834600:CDS
TTGCAGGTTACTATAACACA+AGG 0.637907 5_4:-7657121 Msa0834600:three_prime_UTR
TGTCTGTGTAAACCAGCTCA+GGG 0.638501 5_4:+7658200 None:intergenic
TTTGTTGTGAGTATGTCTGA+TGG 0.646730 5_4:-7656789 Msa0834600:three_prime_UTR
CTTCTGGTGAACAATTAGCA+TGG 0.657527 5_4:+7657000 None:intergenic
TGTCTGATGGCGGTAAACCA+AGG 0.661689 5_4:-7656776 Msa0834600:three_prime_UTR
TTGTATTGACCAGAGTCATG+GGG 0.676120 5_4:+7657365 None:intergenic
ATTTCTTCAAGCACCCATGG+AGG 0.686996 5_4:+7658232 None:intergenic
ATGGCAACAAAGATGGCAGG+TGG 0.687387 5_4:-7656957 Msa0834600:three_prime_UTR
TCAATACAATCAATTTCCTG+AGG 0.689657 5_4:-7657351 Msa0834600:three_prime_UTR
GCAATTGGGAAGAAAGAGTG+GGG 0.730495 5_4:-7657398 Msa0834600:three_prime_UTR
GTTGTGAGTATGTCTGATGG+CGG 0.731006 5_4:-7656786 Msa0834600:three_prime_UTR
TTTACACAGACAAATTAGGG+AGG 0.734523 5_4:-7658189 Msa0834600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAGAATTTAATATACT+TGG - chr5_4:7656769-7656788 Msa0834600:three_prime_UTR 10.0%
!! AATTAAGAATTTAATATACT+TGG - chr5_4:7656769-7656788 Msa0834600:three_prime_UTR 10.0%
!!! TTTGAACAATTTTTTCAAAA+TGG - chr5_4:7657207-7657226 Msa0834600:three_prime_UTR 15.0%
!!! AAGAAGTATATTGATTTATT+AGG - chr5_4:7658146-7658165 Msa0834600:CDS 15.0%
!!! TTTGAACAATTTTTTCAAAA+TGG - chr5_4:7657207-7657226 Msa0834600:three_prime_UTR 15.0%
!!! AAGAAGTATATTGATTTATT+AGG - chr5_4:7658146-7658165 Msa0834600:CDS 15.0%
!! ACATTCAAATTGTCATATTA+AGG - chr5_4:7656944-7656963 Msa0834600:three_prime_UTR 20.0%
!!! ACACTAATATGATATGATTT+TGG + chr5_4:7657234-7657253 None:intergenic 20.0%
!! CTTATTTAAGAATAAACAAG+AGG - chr5_4:7657909-7657928 Msa0834600:intron 20.0%
!! TTTCAAAATCTGATTCATAT+GGG - chr5_4:7658005-7658024 Msa0834600:intron 20.0%
!!! ATTAGGTTTTCTATATTTGT+TGG - chr5_4:7658163-7658182 Msa0834600:CDS 20.0%
!!! TTAGGTTTTCTATATTTGTT+GGG - chr5_4:7658164-7658183 Msa0834600:CDS 20.0%
!! ACATTCAAATTGTCATATTA+AGG - chr5_4:7656944-7656963 Msa0834600:three_prime_UTR 20.0%
!!! ACACTAATATGATATGATTT+TGG + chr5_4:7657234-7657253 None:intergenic 20.0%
!! CTTATTTAAGAATAAACAAG+AGG - chr5_4:7657909-7657928 Msa0834600:intron 20.0%
!! TTTCAAAATCTGATTCATAT+GGG - chr5_4:7658005-7658024 Msa0834600:intron 20.0%
!!! ATTAGGTTTTCTATATTTGT+TGG - chr5_4:7658163-7658182 Msa0834600:CDS 20.0%
!!! TTAGGTTTTCTATATTTGTT+GGG - chr5_4:7658164-7658183 Msa0834600:CDS 20.0%
! AATAATCTGTGAATCTATCA+CGG + chr5_4:7656689-7656708 None:intergenic 25.0%
! TGATAGATTCACAGATTATT+TGG - chr5_4:7656689-7656708 Msa0834600:three_prime_UTR 25.0%
! GATAGATTCACAGATTATTT+GGG - chr5_4:7656690-7656709 Msa0834600:three_prime_UTR 25.0%
! ATATTAAGGATAGTTGTAAG+AGG - chr5_4:7656958-7656977 Msa0834600:three_prime_UTR 25.0%
!!! TTGTAAGAGGAATACTTTTT+GGG - chr5_4:7656971-7656990 Msa0834600:three_prime_UTR 25.0%
! TTAAAACCAAATTCATTTGC+AGG - chr5_4:7657056-7657075 Msa0834600:three_prime_UTR 25.0%
! TTAGTAGCTAGATATTTAGT+GGG + chr5_4:7657282-7657301 None:intergenic 25.0%
! TATATTGAATTTCACATGCA+TGG - chr5_4:7657709-7657728 Msa0834600:intron 25.0%
! ATTGGTTAATCAAGTGAAAA+TGG - chr5_4:7657781-7657800 Msa0834600:intron 25.0%
! CTTTCAAAATCTGATTCATA+TGG - chr5_4:7658004-7658023 Msa0834600:intron 25.0%
! AATAATCTGTGAATCTATCA+CGG + chr5_4:7656689-7656708 None:intergenic 25.0%
! TGATAGATTCACAGATTATT+TGG - chr5_4:7656689-7656708 Msa0834600:three_prime_UTR 25.0%
! GATAGATTCACAGATTATTT+GGG - chr5_4:7656690-7656709 Msa0834600:three_prime_UTR 25.0%
! ATATTAAGGATAGTTGTAAG+AGG - chr5_4:7656958-7656977 Msa0834600:three_prime_UTR 25.0%
!!! TTGTAAGAGGAATACTTTTT+GGG - chr5_4:7656971-7656990 Msa0834600:three_prime_UTR 25.0%
! TTAAAACCAAATTCATTTGC+AGG - chr5_4:7657056-7657075 Msa0834600:three_prime_UTR 25.0%
! TTAGTAGCTAGATATTTAGT+GGG + chr5_4:7657282-7657301 None:intergenic 25.0%
! TATATTGAATTTCACATGCA+TGG - chr5_4:7657709-7657728 Msa0834600:intron 25.0%
! ATTGGTTAATCAAGTGAAAA+TGG - chr5_4:7657781-7657800 Msa0834600:intron 25.0%
! CTTTCAAAATCTGATTCATA+TGG - chr5_4:7658004-7658023 Msa0834600:intron 25.0%
TGGTTTACACAGACAAATTA+GGG - chr5_4:7656565-7656584 Msa0834600:three_prime_UTR 30.0%
! ATTTTCAACGAATCAATGTG+TGG + chr5_4:7656850-7656869 None:intergenic 30.0%
! GTTGTAAGAGGAATACTTTT+TGG - chr5_4:7656970-7656989 Msa0834600:three_prime_UTR 30.0%
!! TGTAAGAGGAATACTTTTTG+GGG - chr5_4:7656972-7656991 Msa0834600:three_prime_UTR 30.0%
ACTAAGACTTGATGCATATT+TGG - chr5_4:7657015-7657034 Msa0834600:three_prime_UTR 30.0%
GAATTTCCTGCAAATGAATT+TGG + chr5_4:7657065-7657084 None:intergenic 30.0%
AGAATTCCAATGCTATGATA+AGG - chr5_4:7657167-7657186 Msa0834600:three_prime_UTR 30.0%
ATTGTACCTTATCATAGCAT+TGG + chr5_4:7657176-7657195 None:intergenic 30.0%
GTTAGTAGCTAGATATTTAG+TGG + chr5_4:7657283-7657302 None:intergenic 30.0%
TATCTAGCTACTAACCAAAA+TGG - chr5_4:7657288-7657307 Msa0834600:three_prime_UTR 30.0%
! TGTTTGAAAATGAGCCATTT+TGG + chr5_4:7657305-7657324 None:intergenic 30.0%
ACAGTATATGAGATCTTCTT+TGG - chr5_4:7657322-7657341 Msa0834600:three_prime_UTR 30.0%
TCAATACAATCAATTTCCTG+AGG - chr5_4:7657406-7657425 Msa0834600:three_prime_UTR 30.0%
!! AGGATACTGGATTTTTCAAA+AGG - chr5_4:7657426-7657445 Msa0834600:three_prime_UTR 30.0%
!! GGATACTGGATTTTTCAAAA+GGG - chr5_4:7657427-7657446 Msa0834600:three_prime_UTR 30.0%
!! ACTAGTTTGGAATATGCTTT+TGG + chr5_4:7657543-7657562 None:intergenic 30.0%
! AAAAGCATATTCCAAACTAG+TGG - chr5_4:7657542-7657561 Msa0834600:intron 30.0%
!! ATAGTTTTACACCACTAGTT+TGG + chr5_4:7657556-7657575 None:intergenic 30.0%
TATAACACAAGGTTTCATGA+TGG - chr5_4:7657647-7657666 Msa0834600:CDS 30.0%
AGATATGATTCAAGTGCTTA+TGG - chr5_4:7657851-7657870 Msa0834600:intron 30.0%
AATAAACAAGAGGTTACTTG+AGG - chr5_4:7657919-7657938 Msa0834600:intron 30.0%
ATAAACAAGAGGTTACTTGA+GGG - chr5_4:7657920-7657939 Msa0834600:intron 30.0%
CTTTATGTTGGACACATTAA+AGG - chr5_4:7658034-7658053 Msa0834600:intron 30.0%
TGGACACATTAAAGGAATTA+AGG - chr5_4:7658042-7658061 Msa0834600:intron 30.0%
CACATATTTCATCATGTTGA+TGG - chr5_4:7658108-7658127 Msa0834600:CDS 30.0%
TGGTTTACACAGACAAATTA+GGG - chr5_4:7656565-7656584 Msa0834600:three_prime_UTR 30.0%
! ATTTTCAACGAATCAATGTG+TGG + chr5_4:7656850-7656869 None:intergenic 30.0%
! GTTGTAAGAGGAATACTTTT+TGG - chr5_4:7656970-7656989 Msa0834600:three_prime_UTR 30.0%
!! TGTAAGAGGAATACTTTTTG+GGG - chr5_4:7656972-7656991 Msa0834600:three_prime_UTR 30.0%
ACTAAGACTTGATGCATATT+TGG - chr5_4:7657015-7657034 Msa0834600:three_prime_UTR 30.0%
GAATTTCCTGCAAATGAATT+TGG + chr5_4:7657065-7657084 None:intergenic 30.0%
AGAATTCCAATGCTATGATA+AGG - chr5_4:7657167-7657186 Msa0834600:three_prime_UTR 30.0%
ATTGTACCTTATCATAGCAT+TGG + chr5_4:7657176-7657195 None:intergenic 30.0%
GTTAGTAGCTAGATATTTAG+TGG + chr5_4:7657283-7657302 None:intergenic 30.0%
TATCTAGCTACTAACCAAAA+TGG - chr5_4:7657288-7657307 Msa0834600:three_prime_UTR 30.0%
! TGTTTGAAAATGAGCCATTT+TGG + chr5_4:7657305-7657324 None:intergenic 30.0%
ACAGTATATGAGATCTTCTT+TGG - chr5_4:7657322-7657341 Msa0834600:three_prime_UTR 30.0%
TCAATACAATCAATTTCCTG+AGG - chr5_4:7657406-7657425 Msa0834600:three_prime_UTR 30.0%
!! AGGATACTGGATTTTTCAAA+AGG - chr5_4:7657426-7657445 Msa0834600:three_prime_UTR 30.0%
!! GGATACTGGATTTTTCAAAA+GGG - chr5_4:7657427-7657446 Msa0834600:three_prime_UTR 30.0%
!! ACTAGTTTGGAATATGCTTT+TGG + chr5_4:7657543-7657562 None:intergenic 30.0%
! AAAAGCATATTCCAAACTAG+TGG - chr5_4:7657542-7657561 Msa0834600:intron 30.0%
!! ATAGTTTTACACCACTAGTT+TGG + chr5_4:7657556-7657575 None:intergenic 30.0%
TATAACACAAGGTTTCATGA+TGG - chr5_4:7657647-7657666 Msa0834600:CDS 30.0%
AGATATGATTCAAGTGCTTA+TGG - chr5_4:7657851-7657870 Msa0834600:intron 30.0%
AATAAACAAGAGGTTACTTG+AGG - chr5_4:7657919-7657938 Msa0834600:intron 30.0%
ATAAACAAGAGGTTACTTGA+GGG - chr5_4:7657920-7657939 Msa0834600:intron 30.0%
CTTTATGTTGGACACATTAA+AGG - chr5_4:7658034-7658053 Msa0834600:intron 30.0%
TGGACACATTAAAGGAATTA+AGG - chr5_4:7658042-7658061 Msa0834600:intron 30.0%
CACATATTTCATCATGTTGA+TGG - chr5_4:7658108-7658127 Msa0834600:CDS 30.0%
CTGGTTTACACAGACAAATT+AGG - chr5_4:7656564-7656583 Msa0834600:three_prime_UTR 35.0%
TTTACACAGACAAATTAGGG+AGG - chr5_4:7656568-7656587 Msa0834600:three_prime_UTR 35.0%
CATAGTAAGTTTCACCAACT+TGG - chr5_4:7656722-7656741 Msa0834600:three_prime_UTR 35.0%
!! ACCAACTTGGTCTTCAATTT+TGG - chr5_4:7656735-7656754 Msa0834600:three_prime_UTR 35.0%
!! CCAACTTGGTCTTCAATTTT+GGG - chr5_4:7656736-7656755 Msa0834600:three_prime_UTR 35.0%
!! CAACTTGGTCTTCAATTTTG+GGG - chr5_4:7656737-7656756 Msa0834600:three_prime_UTR 35.0%
!!! TCTTCAATTTTGGGGTTACT+TGG - chr5_4:7656745-7656764 Msa0834600:three_prime_UTR 35.0%
TCATTTGCAGGAAATTCAAG+TGG - chr5_4:7657068-7657087 Msa0834600:three_prime_UTR 35.0%
CATTTGCAGGAAATTCAAGT+GGG - chr5_4:7657069-7657088 Msa0834600:three_prime_UTR 35.0%
! TTCAAGTTCCATCAGTTTCA+GGG + chr5_4:7657131-7657150 None:intergenic 35.0%
!! TTTCAAGTTCCATCAGTTTC+AGG + chr5_4:7657132-7657151 None:intergenic 35.0%
ACTTGAAAGTTTCCAGGAAT+TGG - chr5_4:7657144-7657163 Msa0834600:three_prime_UTR 35.0%
! ATTGTATTGACCAGAGTCAT+GGG + chr5_4:7657396-7657415 None:intergenic 35.0%
AATCAATTTCCTGAGGATAC+TGG - chr5_4:7657413-7657432 Msa0834600:three_prime_UTR 35.0%
TTGAAAAATCCAGTATCCTC+AGG + chr5_4:7657425-7657444 None:intergenic 35.0%
!! ACTGGATTTTTCAAAAGGGA+AGG - chr5_4:7657431-7657450 Msa0834600:three_prime_UTR 35.0%
! TTTTCAAAAGGGAAGGAACA+TGG - chr5_4:7657438-7657457 Msa0834600:intron 35.0%
ATGGAGATTTCTTCCTTGAA+TGG - chr5_4:7657471-7657490 Msa0834600:intron 35.0%
!! TCAAGCAAACTTGTTGAACA+TGG - chr5_4:7657497-7657516 Msa0834600:intron 35.0%
AAACTATCTGCCAAAATAGC+TGG - chr5_4:7657569-7657588 Msa0834600:intron 35.0%
! CCAATGAATTCCAGCTATTT+TGG + chr5_4:7657582-7657601 None:intergenic 35.0%
CCAAAATAGCTGGAATTCAT+TGG - chr5_4:7657579-7657598 Msa0834600:intron 35.0%
CATGCAACTGAATTAATTGC+AGG - chr5_4:7657620-7657639 Msa0834600:exon 35.0%
TTGCAGGTTACTATAACACA+AGG - chr5_4:7657636-7657655 Msa0834600:CDS 35.0%
TTTGCTAGCATTTGTGCTAT+TGG + chr5_4:7657680-7657699 None:intergenic 35.0%
TTTCACATGCATGGAAATGA+AGG - chr5_4:7657718-7657737 Msa0834600:intron 35.0%
TAATTGTTCACCAGAAGGAT+TGG - chr5_4:7657763-7657782 Msa0834600:intron 35.0%
ACTTGATTAACCAATCCTTC+TGG + chr5_4:7657776-7657795 None:intergenic 35.0%
AGTGAAAATGGCAACAAAGA+TGG - chr5_4:7657793-7657812 Msa0834600:intron 35.0%
TGAAAATTGGAGGCAATTTG+TGG - chr5_4:7657943-7657962 Msa0834600:intron 35.0%
! TTTGTTGTGAGTATGTCTGA+TGG - chr5_4:7657968-7657987 Msa0834600:intron 35.0%
!! GAATCAGATTTTGAAAGCCT+TGG + chr5_4:7658001-7658020 None:intergenic 35.0%
TATGGGACTGATCTTTATGT+TGG - chr5_4:7658022-7658041 Msa0834600:intron 35.0%
! ATGTTGATGGATCATGTGTA+TGG - chr5_4:7658121-7658140 Msa0834600:CDS 35.0%
CTGGTTTACACAGACAAATT+AGG - chr5_4:7656564-7656583 Msa0834600:three_prime_UTR 35.0%
TTTACACAGACAAATTAGGG+AGG - chr5_4:7656568-7656587 Msa0834600:three_prime_UTR 35.0%
CATAGTAAGTTTCACCAACT+TGG - chr5_4:7656722-7656741 Msa0834600:three_prime_UTR 35.0%
!! ACCAACTTGGTCTTCAATTT+TGG - chr5_4:7656735-7656754 Msa0834600:three_prime_UTR 35.0%
!! CCAACTTGGTCTTCAATTTT+GGG - chr5_4:7656736-7656755 Msa0834600:three_prime_UTR 35.0%
!! CAACTTGGTCTTCAATTTTG+GGG - chr5_4:7656737-7656756 Msa0834600:three_prime_UTR 35.0%
!!! TCTTCAATTTTGGGGTTACT+TGG - chr5_4:7656745-7656764 Msa0834600:three_prime_UTR 35.0%
TCATTTGCAGGAAATTCAAG+TGG - chr5_4:7657068-7657087 Msa0834600:three_prime_UTR 35.0%
CATTTGCAGGAAATTCAAGT+GGG - chr5_4:7657069-7657088 Msa0834600:three_prime_UTR 35.0%
! TTCAAGTTCCATCAGTTTCA+GGG + chr5_4:7657131-7657150 None:intergenic 35.0%
!! TTTCAAGTTCCATCAGTTTC+AGG + chr5_4:7657132-7657151 None:intergenic 35.0%
ACTTGAAAGTTTCCAGGAAT+TGG - chr5_4:7657144-7657163 Msa0834600:three_prime_UTR 35.0%
! ATTGTATTGACCAGAGTCAT+GGG + chr5_4:7657396-7657415 None:intergenic 35.0%
AATCAATTTCCTGAGGATAC+TGG - chr5_4:7657413-7657432 Msa0834600:three_prime_UTR 35.0%
TTGAAAAATCCAGTATCCTC+AGG + chr5_4:7657425-7657444 None:intergenic 35.0%
!! ACTGGATTTTTCAAAAGGGA+AGG - chr5_4:7657431-7657450 Msa0834600:three_prime_UTR 35.0%
! TTTTCAAAAGGGAAGGAACA+TGG - chr5_4:7657438-7657457 Msa0834600:intron 35.0%
ATGGAGATTTCTTCCTTGAA+TGG - chr5_4:7657471-7657490 Msa0834600:intron 35.0%
!! TCAAGCAAACTTGTTGAACA+TGG - chr5_4:7657497-7657516 Msa0834600:intron 35.0%
AAACTATCTGCCAAAATAGC+TGG - chr5_4:7657569-7657588 Msa0834600:intron 35.0%
! CCAATGAATTCCAGCTATTT+TGG + chr5_4:7657582-7657601 None:intergenic 35.0%
CCAAAATAGCTGGAATTCAT+TGG - chr5_4:7657579-7657598 Msa0834600:intron 35.0%
CATGCAACTGAATTAATTGC+AGG - chr5_4:7657620-7657639 Msa0834600:exon 35.0%
TTGCAGGTTACTATAACACA+AGG - chr5_4:7657636-7657655 Msa0834600:CDS 35.0%
TTTGCTAGCATTTGTGCTAT+TGG + chr5_4:7657680-7657699 None:intergenic 35.0%
TTTCACATGCATGGAAATGA+AGG - chr5_4:7657718-7657737 Msa0834600:intron 35.0%
TAATTGTTCACCAGAAGGAT+TGG - chr5_4:7657763-7657782 Msa0834600:intron 35.0%
ACTTGATTAACCAATCCTTC+TGG + chr5_4:7657776-7657795 None:intergenic 35.0%
AGTGAAAATGGCAACAAAGA+TGG - chr5_4:7657793-7657812 Msa0834600:intron 35.0%
TGAAAATTGGAGGCAATTTG+TGG - chr5_4:7657943-7657962 Msa0834600:intron 35.0%
! TTTGTTGTGAGTATGTCTGA+TGG - chr5_4:7657968-7657987 Msa0834600:intron 35.0%
!! GAATCAGATTTTGAAAGCCT+TGG + chr5_4:7658001-7658020 None:intergenic 35.0%
TATGGGACTGATCTTTATGT+TGG - chr5_4:7658022-7658041 Msa0834600:intron 35.0%
! ATGTTGATGGATCATGTGTA+TGG - chr5_4:7658121-7658140 Msa0834600:CDS 35.0%
! CTTATTTCTTCAAGCACCCA+TGG + chr5_4:7656531-7656550 None:intergenic 40.0%
CATGGGTGCTTGAAGAAATA+AGG - chr5_4:7656529-7656548 Msa0834600:three_prime_UTR 40.0%
AATCCCGAATACATCTCGTT+GGG - chr5_4:7656594-7656613 Msa0834600:three_prime_UTR 40.0%
ACGGAAGCTTCTCATGTAAT+CGG + chr5_4:7656670-7656689 None:intergenic 40.0%
CCCAAAATTGAAGACCAAGT+TGG + chr5_4:7656739-7656758 None:intergenic 40.0%
GATGGAACTTGAAAGTTTCC+AGG - chr5_4:7657138-7657157 Msa0834600:three_prime_UTR 40.0%
CATTGGAATTCTCCAATTCC+TGG + chr5_4:7657159-7657178 None:intergenic 40.0%
! GAGATCTTCTTTGGAAGCAT+CGG - chr5_4:7657331-7657350 Msa0834600:three_prime_UTR 40.0%
! TTGTATTGACCAGAGTCATG+GGG + chr5_4:7657395-7657414 None:intergenic 40.0%
! GATTGTATTGACCAGAGTCA+TGG + chr5_4:7657397-7657416 None:intergenic 40.0%
GGAACATGGAACACAGAATA+TGG - chr5_4:7657452-7657471 Msa0834600:intron 40.0%
GTTTGCTTGAGTACCATTCA+AGG + chr5_4:7657487-7657506 None:intergenic 40.0%
GCACAAATGCTAGCAAAACA+TGG - chr5_4:7657683-7657702 Msa0834600:intron 40.0%
CTTCTGGTGAACAATTAGCA+TGG + chr5_4:7657760-7657779 None:intergenic 40.0%
CATGCTAATTGTTCACCAGA+AGG - chr5_4:7657758-7657777 Msa0834600:intron 40.0%
AAAATGGCAACAAAGATGGC+AGG - chr5_4:7657797-7657816 Msa0834600:intron 40.0%
!! GGTCAAGTTTTGTCAACAAG+TGG - chr5_4:7657872-7657891 Msa0834600:intron 40.0%
GGTTACTTGAGGGTGAAAAT+TGG - chr5_4:7657930-7657949 Msa0834600:intron 40.0%
TACTTGAGGGTGAAAATTGG+AGG - chr5_4:7657933-7657952 Msa0834600:intron 40.0%
TCCACCAACATTATTGAGCT+TGG - chr5_4:7658205-7658224 Msa0834600:CDS 40.0%
ACCAAGCTCAATAATGTTGG+TGG + chr5_4:7658209-7658228 None:intergenic 40.0%
CACACCAAGCTCAATAATGT+TGG + chr5_4:7658212-7658231 None:intergenic 40.0%
! CTTATTTCTTCAAGCACCCA+TGG + chr5_4:7656531-7656550 None:intergenic 40.0%
CATGGGTGCTTGAAGAAATA+AGG - chr5_4:7656529-7656548 Msa0834600:three_prime_UTR 40.0%
AATCCCGAATACATCTCGTT+GGG - chr5_4:7656594-7656613 Msa0834600:three_prime_UTR 40.0%
ACGGAAGCTTCTCATGTAAT+CGG + chr5_4:7656670-7656689 None:intergenic 40.0%
CCCAAAATTGAAGACCAAGT+TGG + chr5_4:7656739-7656758 None:intergenic 40.0%
GATGGAACTTGAAAGTTTCC+AGG - chr5_4:7657138-7657157 Msa0834600:three_prime_UTR 40.0%
CATTGGAATTCTCCAATTCC+TGG + chr5_4:7657159-7657178 None:intergenic 40.0%
! GAGATCTTCTTTGGAAGCAT+CGG - chr5_4:7657331-7657350 Msa0834600:three_prime_UTR 40.0%
! TTGTATTGACCAGAGTCATG+GGG + chr5_4:7657395-7657414 None:intergenic 40.0%
! GATTGTATTGACCAGAGTCA+TGG + chr5_4:7657397-7657416 None:intergenic 40.0%
GGAACATGGAACACAGAATA+TGG - chr5_4:7657452-7657471 Msa0834600:intron 40.0%
GTTTGCTTGAGTACCATTCA+AGG + chr5_4:7657487-7657506 None:intergenic 40.0%
GCACAAATGCTAGCAAAACA+TGG - chr5_4:7657683-7657702 Msa0834600:intron 40.0%
CTTCTGGTGAACAATTAGCA+TGG + chr5_4:7657760-7657779 None:intergenic 40.0%
CATGCTAATTGTTCACCAGA+AGG - chr5_4:7657758-7657777 Msa0834600:intron 40.0%
AAAATGGCAACAAAGATGGC+AGG - chr5_4:7657797-7657816 Msa0834600:intron 40.0%
!! GGTCAAGTTTTGTCAACAAG+TGG - chr5_4:7657872-7657891 Msa0834600:intron 40.0%
GGTTACTTGAGGGTGAAAAT+TGG - chr5_4:7657930-7657949 Msa0834600:intron 40.0%
TACTTGAGGGTGAAAATTGG+AGG - chr5_4:7657933-7657952 Msa0834600:intron 40.0%
TCCACCAACATTATTGAGCT+TGG - chr5_4:7658205-7658224 Msa0834600:CDS 40.0%
ACCAAGCTCAATAATGTTGG+TGG + chr5_4:7658209-7658228 None:intergenic 40.0%
CACACCAAGCTCAATAATGT+TGG + chr5_4:7658212-7658231 None:intergenic 40.0%
ATTTCTTCAAGCACCCATGG+AGG + chr5_4:7656528-7656547 None:intergenic 45.0%
AATAAGGAAGAACCCTGAGC+TGG - chr5_4:7656545-7656564 Msa0834600:three_prime_UTR 45.0%
TGTCTGTGTAAACCAGCTCA+GGG + chr5_4:7656560-7656579 None:intergenic 45.0%
TTGTCTGTGTAAACCAGCTC+AGG + chr5_4:7656561-7656580 None:intergenic 45.0%
ACACAGACAAATTAGGGAGG+AGG - chr5_4:7656571-7656590 Msa0834600:three_prime_UTR 45.0%
GAATCCCGAATACATCTCGT+TGG - chr5_4:7656593-7656612 Msa0834600:three_prime_UTR 45.0%
ACAGCCCAACGAGATGTATT+CGG + chr5_4:7656601-7656620 None:intergenic 45.0%
TAATCGGAGTAGACCTGAAG+AGG + chr5_4:7656654-7656673 None:intergenic 45.0%
CAGGAAATTCAAGTGGGACT+AGG - chr5_4:7657075-7657094 Msa0834600:three_prime_UTR 45.0%
GGCAATTGGGAAGAAAGAGT+GGG - chr5_4:7657358-7657377 Msa0834600:three_prime_UTR 45.0%
GCAATTGGGAAGAAAGAGTG+GGG - chr5_4:7657359-7657378 Msa0834600:three_prime_UTR 45.0%
AAGAAAGAGTGGGGAACAAG+TGG - chr5_4:7657368-7657387 Msa0834600:three_prime_UTR 45.0%
GGTGAACAATTAGCATGGCA+AGG + chr5_4:7657755-7657774 None:intergenic 45.0%
! ACTTGCTGGTGAGAATGCAT+TGG - chr5_4:7657826-7657845 Msa0834600:intron 45.0%
GTTGTGAGTATGTCTGATGG+CGG - chr5_4:7657971-7657990 Msa0834600:intron 45.0%
ATTTCTTCAAGCACCCATGG+AGG + chr5_4:7656528-7656547 None:intergenic 45.0%
AATAAGGAAGAACCCTGAGC+TGG - chr5_4:7656545-7656564 Msa0834600:three_prime_UTR 45.0%
TGTCTGTGTAAACCAGCTCA+GGG + chr5_4:7656560-7656579 None:intergenic 45.0%
TTGTCTGTGTAAACCAGCTC+AGG + chr5_4:7656561-7656580 None:intergenic 45.0%
ACACAGACAAATTAGGGAGG+AGG - chr5_4:7656571-7656590 Msa0834600:three_prime_UTR 45.0%
GAATCCCGAATACATCTCGT+TGG - chr5_4:7656593-7656612 Msa0834600:three_prime_UTR 45.0%
ACAGCCCAACGAGATGTATT+CGG + chr5_4:7656601-7656620 None:intergenic 45.0%
TAATCGGAGTAGACCTGAAG+AGG + chr5_4:7656654-7656673 None:intergenic 45.0%
CAGGAAATTCAAGTGGGACT+AGG - chr5_4:7657075-7657094 Msa0834600:three_prime_UTR 45.0%
GGCAATTGGGAAGAAAGAGT+GGG - chr5_4:7657358-7657377 Msa0834600:three_prime_UTR 45.0%
GCAATTGGGAAGAAAGAGTG+GGG - chr5_4:7657359-7657378 Msa0834600:three_prime_UTR 45.0%
AAGAAAGAGTGGGGAACAAG+TGG - chr5_4:7657368-7657387 Msa0834600:three_prime_UTR 45.0%
GGTGAACAATTAGCATGGCA+AGG + chr5_4:7657755-7657774 None:intergenic 45.0%
! ACTTGCTGGTGAGAATGCAT+TGG - chr5_4:7657826-7657845 Msa0834600:intron 45.0%
GTTGTGAGTATGTCTGATGG+CGG - chr5_4:7657971-7657990 Msa0834600:intron 45.0%
TCAAGCACCCATGGAGGTAA+AGG + chr5_4:7656522-7656541 None:intergenic 50.0%
CAGCCCAACGAGATGTATTC+GGG + chr5_4:7656600-7656619 None:intergenic 50.0%
GGAGTTCTTCCAGCTAGAAC+AGG + chr5_4:7656633-7656652 None:intergenic 50.0%
AGCTGGAAGAACTCCTCTTC+AGG - chr5_4:7656638-7656657 Msa0834600:three_prime_UTR 50.0%
AAGTGGGACTAGGTCCTTGT+GGG - chr5_4:7657085-7657104 Msa0834600:three_prime_UTR 50.0%
GGATATCTCAACTCCCCACA+AGG + chr5_4:7657102-7657121 None:intergenic 50.0%
CCATCAGTTTCAGGGTACGA+TGG + chr5_4:7657123-7657142 None:intergenic 50.0%
CCATCGTACCCTGAAACTGA+TGG - chr5_4:7657120-7657139 Msa0834600:three_prime_UTR 50.0%
!! TCTTCTTTGGAAGCATCGGC+AGG - chr5_4:7657335-7657354 Msa0834600:three_prime_UTR 50.0%
!! CTTCTTTGGAAGCATCGGCA+GGG - chr5_4:7657336-7657355 Msa0834600:three_prime_UTR 50.0%
!! TTCTTTGGAAGCATCGGCAG+GGG - chr5_4:7657337-7657356 Msa0834600:three_prime_UTR 50.0%
GGGCAATTGGGAAGAAAGAG+TGG - chr5_4:7657357-7657376 Msa0834600:three_prime_UTR 50.0%
ATGGCAACAAAGATGGCAGG+TGG - chr5_4:7657800-7657819 Msa0834600:intron 50.0%
!! TGTCTGATGGCGGTAAACCA+AGG - chr5_4:7657981-7658000 Msa0834600:intron 50.0%
TCAAGCACCCATGGAGGTAA+AGG + chr5_4:7656522-7656541 None:intergenic 50.0%
CAGCCCAACGAGATGTATTC+GGG + chr5_4:7656600-7656619 None:intergenic 50.0%
GGAGTTCTTCCAGCTAGAAC+AGG + chr5_4:7656633-7656652 None:intergenic 50.0%
AGCTGGAAGAACTCCTCTTC+AGG - chr5_4:7656638-7656657 Msa0834600:three_prime_UTR 50.0%
AAGTGGGACTAGGTCCTTGT+GGG - chr5_4:7657085-7657104 Msa0834600:three_prime_UTR 50.0%
GGATATCTCAACTCCCCACA+AGG + chr5_4:7657102-7657121 None:intergenic 50.0%
CCATCAGTTTCAGGGTACGA+TGG + chr5_4:7657123-7657142 None:intergenic 50.0%
CCATCGTACCCTGAAACTGA+TGG - chr5_4:7657120-7657139 Msa0834600:three_prime_UTR 50.0%
!! TCTTCTTTGGAAGCATCGGC+AGG - chr5_4:7657335-7657354 Msa0834600:three_prime_UTR 50.0%
!! CTTCTTTGGAAGCATCGGCA+GGG - chr5_4:7657336-7657355 Msa0834600:three_prime_UTR 50.0%
!! TTCTTTGGAAGCATCGGCAG+GGG - chr5_4:7657337-7657356 Msa0834600:three_prime_UTR 50.0%
GGGCAATTGGGAAGAAAGAG+TGG - chr5_4:7657357-7657376 Msa0834600:three_prime_UTR 50.0%
ATGGCAACAAAGATGGCAGG+TGG - chr5_4:7657800-7657819 Msa0834600:intron 50.0%
!! TGTCTGATGGCGGTAAACCA+AGG - chr5_4:7657981-7658000 Msa0834600:intron 50.0%
GATCCAGTGCCTGTTCTAGC+TGG - chr5_4:7656621-7656640 Msa0834600:three_prime_UTR 55.0%
CTTCCAGCTAGAACAGGCAC+TGG + chr5_4:7656627-7656646 None:intergenic 55.0%
CAAGTGGGACTAGGTCCTTG+TGG - chr5_4:7657084-7657103 Msa0834600:three_prime_UTR 55.0%
AGTGGGACTAGGTCCTTGTG+GGG - chr5_4:7657086-7657105 Msa0834600:three_prime_UTR 55.0%
!! AAGCATCGGCAGGGGCAATT+GGG - chr5_4:7657345-7657364 Msa0834600:three_prime_UTR 55.0%
ACAAGTGGACCCCATGACTC+TGG - chr5_4:7657383-7657402 Msa0834600:three_prime_UTR 55.0%
ATGGCAGGTGGTGAACTTGC+TGG - chr5_4:7657812-7657831 Msa0834600:intron 55.0%
GATCCAGTGCCTGTTCTAGC+TGG - chr5_4:7656621-7656640 Msa0834600:three_prime_UTR 55.0%
CTTCCAGCTAGAACAGGCAC+TGG + chr5_4:7656627-7656646 None:intergenic 55.0%
CAAGTGGGACTAGGTCCTTG+TGG - chr5_4:7657084-7657103 Msa0834600:three_prime_UTR 55.0%
AGTGGGACTAGGTCCTTGTG+GGG - chr5_4:7657086-7657105 Msa0834600:three_prime_UTR 55.0%
!! AAGCATCGGCAGGGGCAATT+GGG - chr5_4:7657345-7657364 Msa0834600:three_prime_UTR 55.0%
ACAAGTGGACCCCATGACTC+TGG - chr5_4:7657383-7657402 Msa0834600:three_prime_UTR 55.0%
ATGGCAGGTGGTGAACTTGC+TGG - chr5_4:7657812-7657831 Msa0834600:intron 55.0%
!! GAAGCATCGGCAGGGGCAAT+TGG - chr5_4:7657344-7657363 Msa0834600:three_prime_UTR 60.0%
!! GAAGCATCGGCAGGGGCAAT+TGG - chr5_4:7657344-7657363 Msa0834600:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 7656516 7658263 7656516 ID=Msa0834600;Name=Msa0834600
chr5_4 mRNA 7656516 7658263 7656516 ID=Msa0834600-mRNA-1;Parent=Msa0834600;Name=Msa0834600-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0.66|1|0.5|0.33|3|977|93
chr5_4 exon 7656516 7657453 7656516 ID=Msa0834600-mRNA-1:exon:3379;Parent=Msa0834600-mRNA-1
chr5_4 exon 7657591 7657701 7657591 ID=Msa0834600-mRNA-1:exon:3378;Parent=Msa0834600-mRNA-1
chr5_4 exon 7658054 7658263 7658054 ID=Msa0834600-mRNA-1:exon:3377;Parent=Msa0834600-mRNA-1
chr5_4 CDS 7658054 7658263 7658054 ID=Msa0834600-mRNA-1:cds;Parent=Msa0834600-mRNA-1
chr5_4 CDS 7657630 7657701 7657630 ID=Msa0834600-mRNA-1:cds;Parent=Msa0834600-mRNA-1
chr5_4 three_prime_UTR 7657591 7657629 7657591 ID=Msa0834600-mRNA-1:three_prime_utr;Parent=Msa0834600-mRNA-1
chr5_4 three_prime_UTR 7656516 7657453 7656516 ID=Msa0834600-mRNA-1:three_prime_utr;Parent=Msa0834600-mRNA-1
Gene Sequence

>Msa0834600

ATACCTTTACCTCCATGGGTGCTTGAAGAAATAAGGAAGAACCCTGAGCTGGTTTACACAGACAAATTAGGGAGGAGGAATCCCGAATACATCTCGTTGGGCTGTGATCCAGTGCCTGTTCTAGCTGGAAGAACTCCTCTTCAGGTCTACTCCGATTACATGAGAAGCTTCCGTGATAGATTCACAGATTATTTGGGCAATGTCATCATAGAAATTCAAGTGGGACTAGGTCCTTGTGGGGAGTTGAGATATCCATCGTACCCTGAAACTGATGGAACTTGA
Protein sequence

>Msa0834600

IPLPPWVLEEIRKNPELVYTDKLGRRNPEYISLGCDPVPVLAGRTPLQVYSDYMRSFRDRFTDYLGNVIIEIQVGLGPCGELRYPSYPETDGT*