AlfalfaGEDB | Msa0650730

M. sativa cultivar zhongmu-4 / Msa0650730

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0650730	XP_003607784.1	91.358	81	7	0	1	81	1	81	9.78e-36	125

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0650730	-0.815450	9.187527e-52	-8.615850e-47
Msa0032610	Msa0650730	0.810083	1.375195e-50	-8.615850e-47
Msa0148120	Msa0650730	0.808751	2.655414e-50	-8.615850e-47
Msa0197180	Msa0650730	0.800618	1.324183e-48	-8.615850e-47
Msa0223100	Msa0650730	0.808721	2.695274e-50	-8.615850e-47
Msa0223290	Msa0650730	0.809583	1.761118e-50	-8.615850e-47
Msa0223380	Msa0650730	0.818683	1.724643e-52	-8.615850e-47
Msa0266210	Msa0650730	0.823363	1.442115e-53	-8.615850e-47
Msa0279210	Msa0650730	-0.833436	5.338620e-56	-8.615850e-47
Msa0287670	Msa0650730	0.823335	1.463730e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0650730	MtrunA17_Chr4g0042971	47.500	80	36	2	4	81	81	156	3.19e-11	55.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 19 sgRNAs with CRISPR-Local

Find 24 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAAGGTGCGGTTAA+TGG	0.283737	4_3:+57991406	Msa0650730:CDS
AAACCCAAACCAGATCCTAT+TGG	0.473112	4_3:+57991382	Msa0650730:CDS
AATGGTGCTACAAAGTCTGT+TGG	0.575777	4_3:+57991424	Msa0650730:CDS
ACTGTAGGAAATGCTGCAGC+TGG	0.565617	4_3:+57991277	Msa0650730:CDS
ACTGTGGGAAATGCTGCAGC+TGG	0.580044	4_3:+57991310	Msa0650730:CDS
AGCACCATTAACCGCACCTT+TGG	0.426753	4_3:-57991410	None:intergenic
AGCTGGTGCCCAGAAAACTG+TGG	0.654418	4_3:+57991294	Msa0650730:CDS
GATCCTATTGGCAAAACCAA+AGG	0.604323	4_3:+57991394	Msa0650730:CDS
GCACTTGCCAAAATATCGTT+AGG	0.455143	4_3:-57991226	None:intergenic
GCTGGTGCCCAGAAAACTGT+GGG	0.683027	4_3:+57991295	Msa0650730:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCACTTGCCAAAATATCGTT+AGG	-	chr4_3:57991229-57991248	None:intergenic	40.0%
AAACCCAAACCAGATCCTAT+TGG	+	chr4_3:57991382-57991401	Msa0650730:CDS	40.0%
TTTGCCAATAGGATCTGGTT+TGG	-	chr4_3:57991389-57991408	None:intergenic	40.0%
GATCCTATTGGCAAAACCAA+AGG	+	chr4_3:57991394-57991413	Msa0650730:CDS	40.0%
TATTGGCAAAACCAAAGGTG+CGG	+	chr4_3:57991399-57991418	Msa0650730:CDS	40.0%
GCTTCAGCACAGAAAACTGT+AGG	+	chr4_3:57991262-57991281	Msa0650730:CDS	45.0%
GCTGGTGTTCATAAGACTGT+AGG	+	chr4_3:57991328-57991347	Msa0650730:CDS	45.0%
TGTAGGAGACTATGCTACCA+TGG	+	chr4_3:57991345-57991364	Msa0650730:CDS	45.0%
ACTGTAGGAAATGCTGCAGC+TGG	+	chr4_3:57991277-57991296	Msa0650730:CDS	50.0%
AGCACCATTAACCGCACCTT+TGG	-	chr4_3:57991413-57991432	None:intergenic	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	57991217	57991462	57991217	ID=Msa0650730;Name=Msa0650730
chr4_3	mRNA	57991217	57991462	57991217	ID=Msa0650730-mRNA-1;Parent=Msa0650730;Name=Msa0650730-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|81
chr4_3	exon	57991217	57991462	57991217	ID=Msa0650730-mRNA-1:exon:15271;Parent=Msa0650730-mRNA-1
chr4_3	CDS	57991217	57991462	57991217	ID=Msa0650730-mRNA-1:cds;Parent=Msa0650730-mRNA-1

Gene Sequence	>Msa0650730 ATGGCTGGACCTAACGATATTTTGGCAAGTGCAAAGGATGCAGCAGCTTCAGCACAGAAAACTGTAGGAAATGCTGCAGCTGGTGCCCAGAAAACTGTGGGAAATGCTGCAGCTGGTGTTCATAAGACTGTAGGAGACTATGCTACCATGGCTGCTGATTATGTAAAACCCAAACCAGATCCTATTGGCAAAACCAAAGGTGCGGTTAATGGTGCTACAAAGTCTGTTGGAGGCTTATTTAAATGA
Protein sequence	>Msa0650730 MAGPNDILASAKDAAASAQKTVGNAAAGAQKTVGNAAAGVHKTVGDYATMAADYVKPKPDPIGKTKGAVNGATKSVGGLFK*