AlfalfaGEDB | Msa0837060

M. sativa cultivar zhongmu-4 / Msa0837060

KEGG: -
GO: -
PFAM: PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837060	XP_003611862.1	95.639	665	27	1	1	665	1	663	0.0	1327

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837060	sp\|O82380\|PP175_ARATH	39.444	611	366	3	44	650	36	646	5.27e-160	481

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837060	G7K9H7	95.639	665	27	1	1	665	1	663	0.0	1327

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0837060	0.810910	9.111602e-51	-8.615850e-47
Msa0050390	Msa0837060	0.806146	9.476244e-50	-8.615850e-47
Msa0054480	Msa0837060	0.809259	2.067032e-50	-8.615850e-47
Msa0078900	Msa0837060	0.808481	3.031855e-50	-8.615850e-47
Msa0126610	Msa0837060	0.802384	5.754649e-49	-8.615850e-47
Msa0171540	Msa0837060	0.809080	2.257429e-50	-8.615850e-47
Msa0187120	Msa0837060	0.818631	1.771934e-52	-8.615850e-47
Msa0299870	Msa0837060	0.812274	4.603916e-51	-8.615850e-47
Msa0337620	Msa0837060	0.805079	1.587137e-49	-8.615850e-47
Msa0481530	Msa0837060	0.804205	2.415012e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837060	MtrunA17_Chr5g0403151	95.639	665	27	1	1	665	1	663	0.0	1327
Msa0837060	MtrunA17_Chr7g0259141	39.080	609	367	3	37	642	44	651	1.71e-158	471
Msa0837060	MtrunA17_Chr4g0003141	36.940	647	393	7	22	661	23	661	4.20e-148	447
Msa0837060	MtrunA17_Chr2g0298181	38.188	618	342	6	44	656	27	609	6.79e-148	442
Msa0837060	MtrunA17_Chr2g0298181	29.452	438	260	7	35	461	114	513	4.55e-53	192
Msa0837060	MtrunA17_Chr7g0247091	37.906	554	336	3	66	615	6	555	4.36e-134	405
Msa0837060	MtrunA17_Chr7g0247091	24.948	477	282	8	8	449	57	492	2.77e-36	144
Msa0837060	MtrunA17_Chr8g0366221	34.295	624	370	3	28	650	2	586	2.45e-133	405
Msa0837060	MtrunA17_Chr6g0488851	37.351	589	362	3	44	625	8	596	1.15e-131	400
Msa0837060	MtrunA17_Chr5g0394591	36.139	606	378	4	53	650	35	639	4.18e-131	403

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837060	AT2G29760.1	39.444	611	366	3	44	650	36	646	5.36e-161	481
Msa0837060	AT2G22410.1	39.482	618	365	4	38	648	53	668	7.81e-159	473
Msa0837060	AT4G14820.1	35.256	624	403	1	28	650	2	625	3.87e-144	437
Msa0837060	AT3G15930.1	36.125	609	380	3	48	650	44	649	1.11e-138	422
Msa0837060	AT2G34400.1	35.057	619	361	6	7	623	7	586	1.97e-138	419
Msa0837060	AT1G08070.1	35.459	643	348	5	44	650	39	650	2.78e-136	417
Msa0837060	AT3G29230.1	35.987	603	343	3	45	643	26	589	9.36e-136	411
Msa0837060	AT2G13600.1	34.884	645	378	4	44	646	25	669	4.88e-135	412
Msa0837060	AT3G12770.1	33.826	609	369	3	44	650	27	603	3.57e-126	389
Msa0837060	AT3G12770.1	26.777	422	272	4	35	450	116	506	4.71e-48	180

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Find 140 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGGTAATTTGGATT+TGG	0.233157	5_4:+10792858	Msa0837060:CDS
AAACAACAAAATTGCTTCTT+CGG	0.351830	5_4:-10792767	None:intergenic
AAACATGGTAATTTGGATTT+GGG	0.335265	5_4:+10792859	Msa0837060:CDS
AAAGGGATTGTAAACTGGTT+TGG	0.405990	5_4:-10792514	None:intergenic
AACAAGTATATACTCTATGC+TGG	0.453754	5_4:+10794007	Msa0837060:CDS
AACATGAATTTATTTGGTTG+AGG	0.427239	5_4:-10792403	None:intergenic
AAGATTTGTGCATCTTTATA+TGG	0.254300	5_4:+10792882	Msa0837060:CDS
AATGGATCATCTAAAGTCTG+CGG	0.615203	5_4:+10794037	Msa0837060:CDS
AATTAATGGGTATTCTAAAA+TGG	0.137993	5_4:+10792738	Msa0837060:CDS
AATTGAATCAATTTCAATAC+CGG	0.471248	5_4:-10792911	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGACTTTAACTCTTGCAAAA+TGG	-	chr5_4:10792200-10792219	None:intergenic	30.0%
TTTGCCTAATGTGATAACTT+GGG	-	chr5_4:10792320-10792339	None:intergenic	30.0%
TCGTGGAATTCGATAATTAA+TGG	+	chr5_4:10792724-10792743	Msa0837060:CDS	30.0%
CGTGGAATTCGATAATTAAT+GGG	+	chr5_4:10792725-10792744	Msa0837060:CDS	30.0%
TTCGACAAAACATGGTAATT+TGG	+	chr5_4:10792852-10792871	Msa0837060:CDS	30.0%
CATCTTTATATGGTCATTAC+CGG	+	chr5_4:10792892-10792911	Msa0837060:CDS	30.0%
AATTGTTACAAATGCACTCA+TGG	+	chr5_4:10792930-10792949	Msa0837060:CDS	30.0%
ATTAACGCTTATGCTAATCA+TGG	+	chr5_4:10793042-10793061	Msa0837060:CDS	30.0%
CATCCTATAGAAAAGATCAA+CGG	-	chr5_4:10793175-10793194	None:intergenic	30.0%
GTTATCAAAAATGTAGCTGT+GGG	-	chr5_4:10793289-10793308	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	10792115	10794112	10792115	ID=Msa0837060;Name=Msa0837060
chr5_4	mRNA	10792115	10794112	10792115	ID=Msa0837060-mRNA-1;Parent=Msa0837060;Name=Msa0837060-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|665
chr5_4	exon	10792115	10794112	10792115	ID=Msa0837060-mRNA-1:exon:4751;Parent=Msa0837060-mRNA-1
chr5_4	CDS	10792115	10794112	10792115	ID=Msa0837060-mRNA-1:cds;Parent=Msa0837060-mRNA-1

Gene Sequence

>Msa0837060

ATGTCCTCCATTTTCAAACTGAAACCAGCAAAAGCTGTTTCCAACGTGTTTTGCATACACACACAAACACAAATCAGCAAAACCATTTTGCAAGAGTTAAAGTCTCCAACTCATCAAACCCTTCACTATCTCATAGACCAATGCATCTCCCTAAAACAACTCAAACATGTTCATGCACAAATCATCCTCCATGGACTTGCCACCCAAGTTATCACATTAGGCAAACTAGTTTCCTCAAGTGTACAACTTCGAGATCTTCGTTACGCTCACAACATGTTTGATCAAATTCCTCAACCAAATAAATTCATGTTTAACCATTTAATTAAGGGTTATTCTAATTCCAATGACCCAGTTAAGTCTTTGTTGCTGTACCGTCGTATGGTGGGTGATGGTCTTTTACCAAACCAGTTTACAATCCCTTTTGTTCTGAAAGCTTGTGCTGCCAAATCGTGTTATTGGGTCGGTGTTTGTGTTCATGCTCAGTCTTTTAAGCTTGGAATGGGGTCACATGCTTGTGTTCAGAACGCAATTTTGAATGTTTATGTTGCTTGTGGTTTGATAACAAGTGCAAGGAGAGTGTTTGATGATATTTCTGAAAGGACCTTGGTCTCGTGGAATTCGATAATTAATGGGTATTCTAAAATGGGTTGGTCCGAAGAAGCAATTTTGTTGTTTCGAGAAATGCAAGAAGTTGGATTGGAGCCTGATGTGTTTACGTTGGTTGGCTTGCTTTCTGTTTCGACAAAACATGGTAATTTGGATTTGGGAAGATTTGTGCATCTTTATATGGTCATTACCGGTATTGAAATTGATTCAATTGTTACAAATGCACTCATGGATATGTATGCCAAGTGTGGGAATTTGAAATGTGCTAAAAGTGTTTTTGATCAAATGCTTGATAAGGATGTTGTTTCTTGGACGTGTATGATTAACGCTTATGCTAATCATGGACTTATTGATTGTGCTTTGGAATTTTTTAACCAGATGCCGGGGAAGAACGTGGTTTCTTGGAATTCAATAATTTGGTGTCATGTTCAAGAGGGACTTTATCCGGAAGCCGTTGATCTTTTCTATAGGATGTGTGATTCAGGCGTGATGCCTAATGATGCTACTCTTGTTGCCATTCTTTCATCCTGCAGTCACATGGGTGATCTAGCATTGGGAAAACAAGCCCACAGCTACATTTTTGATAACAACATTACACTGAGTGTGACGCTTTGCAACGCTATAATAGACATGTATGCAAAATGCGGTGCTCTTCAGATTGCCATGGACGTCTTCTTCGGGATGCCTGAGAAGAATGCAGTGTCATGGAATGTTATTATCGGGGCACTTGCTCTGCATGGTTATGGAAAAGAAGCTATTGAGATGTTTGAGAAGATGCAGGCAAGTGGAGTTTGTCCTGATGAGATTACTTTTACAGGTTTGCTTTCTGCTTGTAGTCACAGTGGTCTTGTGGACATGGGGCAATATTACTTTGACATTATGAATTCGACTTTCGGGATTTCTCCTGATGTTGAACATTATGCGTGCATGGTCGATCTTTTAGGTCGCCGTGGATTGTTAGGAGAAGCGATATCATTGATTAAGAAGATGCCTGTTAAACCAGATGTTGTTGTTTGGAGTGCTTTACTTGGTGCTTGTCGAACCTATGGGAATCTAGCAATTGGTAAGCAAATCATGAAGCAGTTGTTGGAGTTGGGACGATACAATTCTGGTCTTTATGTGCTTCTCTCAAATATGTATTCAGAATCTCAAAGATGGGAAGACATGAAAAATATTTGGAAAATACTGGATCAAAATGGGATAAAAAAGTGCAGGGCAATCAGCTTCATTGAAATTGATGGCTGTTGTTATCAATTTATGGTGGATGATAAAAGACATGGAGCTTCAACAAGTATATACTCTATGCTGGGTCAATTAATGGATCATCTAAAGTCTGCGGGGTATCCATGTAAACATTTGGATGTAGAGGAAATATACTGCTCTTATATTTAA

Protein sequence

>Msa0837060

MSSIFKLKPAKAVSNVFCIHTQTQISKTILQELKSPTHQTLHYLIDQCISLKQLKHVHAQIILHGLATQVITLGKLVSSSVQLRDLRYAHNMFDQIPQPNKFMFNHLIKGYSNSNDPVKSLLLYRRMVGDGLLPNQFTIPFVLKACAAKSCYWVGVCVHAQSFKLGMGSHACVQNAILNVYVACGLITSARRVFDDISERTLVSWNSIINGYSKMGWSEEAILLFREMQEVGLEPDVFTLVGLLSVSTKHGNLDLGRFVHLYMVITGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYPEAVDLFYRMCDSGVMPNDATLVAILSSCSHMGDLALGKQAHSYIFDNNITLSVTLCNAIIDMYAKCGALQIAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDMGQYYFDIMNSTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSNMYSESQRWEDMKNIWKILDQNGIKKCRAISFIEIDGCCYQFMVDDKRHGASTSIYSMLGQLMDHLKSAGYPCKHLDVEEIYCSYI*