AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0488560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0488560 MtrunA17_Chr3g0078341 95.131 534 22 2 1 534 1 530 0.0 1012
Msa0488560 MtrunA17_Chr6g0475211 89.326 534 57 0 1 534 1 534 0.0 929
Msa0488560 MtrunA17_Chr6g0482641 56.250 288 91 6 117 403 29 282 1.28e-101 308
Msa0488560 MtrunA17_Chr6g0450581 37.267 322 152 8 217 531 29 307 3.60e-55 187
Msa0488560 MtrunA17_Chr1g0149901 47.980 198 86 4 332 525 20 204 1.45e-49 169
Msa0488560 MtrunA17_Chr1g0149891 47.980 198 86 4 332 525 147 331 1.40e-48 171
Msa0488560 MtrunA17_Chr6g0476071 46.296 216 68 7 241 452 3 174 1.18e-46 160
Msa0488560 MtrunA17_Chr1g0159581 42.029 207 85 6 334 531 25 205 1.99e-39 142
Msa0488560 MtrunA17_Chr6g0476081 76.623 77 17 1 452 528 11 86 2.72e-33 121
Msa0488560 MtrunA17_Chr1g0149081 45.833 120 62 1 335 454 22 138 2.88e-26 103
Msa0488560 MtrunA17_Chr7g0223571 60.227 88 28 2 453 534 1 87 7.79e-25 99.0
Msa0488560 MtrunA17_Chr1g0149091 60.000 75 27 1 454 525 23 97 2.77e-24 97.4
Msa0488560 MtrunA17_Chr6g0450541 52.941 85 37 1 450 531 5 89 4.29e-23 93.6
Msa0488560 MtrunA17_Chr6g0482631 48.718 117 15 3 453 526 1 115 7.11e-21 88.2
Msa0488560 MtrunA17_Chr6g0450531 35.135 111 56 3 321 428 19 116 2.80e-16 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0488560 AT5G51740.1 60.000 400 151 6 139 534 48 442 5.64e-174 498
Msa0488560 AT5G51740.2 60.000 400 151 6 139 534 91 485 1.69e-173 499
Msa0488560 AT5G51740.3 55.975 318 133 4 138 452 90 403 2.75e-127 378

Find 179 sgRNAs with CRISPR-Local

Find 524 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATCTGGGTATTTGAATT+TGG 0.114800 3_4:-8478164 Msa0488560:CDS
GTGAAAATAATAAGAATATT+AGG 0.145873 3_4:-8478069 Msa0488560:CDS
ATGAGATTCTTGATGATAAA+TGG 0.146030 3_4:-8477382 Msa0488560:CDS
TGGATTGAATTGGGAGATTT+TGG 0.167567 3_4:-8477297 Msa0488560:CDS
TCTCAAGGTTGTAACTTTAA+TGG 0.172006 3_4:-8478040 Msa0488560:CDS
GGCAACAGATCCAGTTAATT+TGG 0.179739 3_4:+8473684 None:intergenic
TTTCTAAGATATTAGATAAA+AGG 0.183661 3_4:-8477997 Msa0488560:CDS
CACATTAAAGCTAGCATCTT+TGG 0.187610 3_4:+8478138 None:intergenic
GCTGAAGCTGACAGATAATT+TGG 0.192402 3_4:-8473545 Msa0488560:three_prime_UTR
AACAAAAGTGCTAACTTTAA+TGG 0.199037 3_4:-8478232 Msa0488560:CDS
AAATTGATTCATCTTGTTAT+TGG 0.204174 3_4:+8478678 None:intergenic
ATCCTCACTCTTACACTTTC+AGG 0.212835 3_4:+8477578 None:intergenic
CAATCTGGGTATTTGAATTT+GGG 0.238019 3_4:-8478163 Msa0488560:CDS
CGCTTGACCTTGTCAATATT+CGG 0.240283 3_4:-8478948 Msa0488560:five_prime_UTR
AATTGATTCATCTTGTTATT+GGG 0.268742 3_4:+8478679 None:intergenic
GGATTCTGAAACCAATTCTT+TGG 0.281604 3_4:+8477797 None:intergenic
GCAGAGATAGCAACTATTAT+TGG 0.282923 3_4:-8477185 Msa0488560:CDS
CTCAAGGTTGTAACTTTAAT+GGG 0.283856 3_4:-8478039 Msa0488560:CDS
TTTGAGATTAATAAGAATAT+TGG 0.285361 3_4:-8477971 Msa0488560:CDS
GGTTCAGAAGAGTAGGAAAA+AGG 0.286020 3_4:-8477360 Msa0488560:CDS
CCATCCAAATGTGACGTATT+AGG 0.286467 3_4:+8477317 None:intergenic
CTGCATGTTTCCAAATTAAC+TGG 0.288993 3_4:-8473694 Msa0488560:three_prime_UTR
ATCTTCTTCTCCATCTCTTT+CGG 0.290022 3_4:+8477665 None:intergenic
ATTATCTTATGCTTTGTTGC+AGG 0.291814 3_4:-8478919 Msa0488560:five_prime_UTR
TGTATTGGCAGGAGTAAAAT+TGG 0.293932 3_4:-8478815 Msa0488560:five_prime_UTR
GCAATCTGGGTATTTGAATC+TGG 0.296972 3_4:-8478257 Msa0488560:CDS
AGATGAATAGTGGGAGAAAA+TGG 0.297872 3_4:+8478485 None:intergenic
CACATTTGGATGGATTGAAT+TGG 0.299543 3_4:-8477307 Msa0488560:CDS
AAATGTGTTCTCTTCGTATA+AGG 0.304300 3_4:+8477698 None:intergenic
ACAAAAGTGCTAACTTTAAT+GGG 0.313258 3_4:-8478231 Msa0488560:CDS
CCCAACTTCTCGTAGACTTT+AGG 0.315746 3_4:+8473970 None:intergenic
GTAAAGGTGTTAGCTTTAAT+AGG 0.316218 3_4:-8477940 Msa0488560:CDS
TGGGAAGATAGTTGTGTTTA+CGG 0.319349 3_4:-8477234 Msa0488560:CDS
AACCAATTCTTTGGCCCTCT+TGG 0.319495 3_4:+8477806 None:intergenic
TGGTGTTGAAGGATTTCTTT+AGG 0.322830 3_4:-8473812 Msa0488560:exon
AAATCTCGTCGCGTAGTTGC+CGG 0.334786 3_4:+8479775 None:intergenic
ACACTTTCAGGGTGCATTGC+AGG 0.341748 3_4:+8477590 None:intergenic
TTGAGATTAATAAGAATATT+GGG 0.342471 3_4:-8477970 Msa0488560:CDS
TCTTCAATTTCTAGGAGATT+AGG 0.344431 3_4:-8478103 Msa0488560:CDS
TGAAAATAATAAGAATATTA+GGG 0.346615 3_4:-8478068 Msa0488560:CDS
GACTAGTATTCTACCTGAAA+TGG 0.349711 3_4:+8478875 None:intergenic
GATTGCAACGTTCTGTTACT+AGG 0.353680 3_4:+8478274 None:intergenic
ATTTCAAGAGATTAGACAAC+AGG 0.356427 3_4:-8477898 Msa0488560:CDS
ATGATGAGATTGAAGGAAAT+AGG 0.358466 3_4:+8478729 None:intergenic
ATTGGTATAGTGGTTGGTTC+TGG 0.359308 3_4:-8477761 Msa0488560:CDS
GATTGCAAAATTCTGTTACT+AGG 0.362105 3_4:+8478181 None:intergenic
TACTGTGTTTGGTGAAGAAA+AGG 0.364696 3_4:-8477471 Msa0488560:CDS
AGCCAAGAGGGCCAAAGAAT+TGG 0.368828 3_4:-8477808 Msa0488560:CDS
AGTAACAGAACGTTGCAATC+TGG 0.371103 3_4:-8478271 Msa0488560:CDS
AAGAAAACGAGCAGAATTAC+TGG 0.372401 3_4:-8473893 Msa0488560:CDS
TTGAGAAAACAAGACGCATT+TGG 0.375417 3_4:-8479754 Msa0488560:five_prime_UTR
AAGAGATGGAGAAGAAGATT+GGG 0.386070 3_4:-8477661 Msa0488560:CDS
CATCCCCTCAGCACTGTGTC+TGG 0.390785 3_4:+8476794 None:intergenic
GAGGGAAAGTTGAAGGGAAT+TGG 0.391132 3_4:-8477415 Msa0488560:CDS
TTTGATCTTCCTATCCTTGT+CGG 0.394467 3_4:+8478783 None:intergenic
GTTGCCTGAGATTCAGAGTA+TGG 0.397325 3_4:-8473667 Msa0488560:three_prime_UTR
TTCTAAGATATTAGATAAAA+GGG 0.399166 3_4:-8477996 Msa0488560:CDS
CTATGTCATCACTTCTCTTA+CGG 0.399194 3_4:-8476701 Msa0488560:CDS
GCTTCAGAAAATACTGTGTT+TGG 0.401820 3_4:-8477482 Msa0488560:CDS
GGGAAGATAGTTGTGTTTAC+GGG 0.403532 3_4:-8477233 Msa0488560:CDS
GACATAGTGTTGACAATATC+AGG 0.403878 3_4:+8476717 None:intergenic
GGAAATTTGTGGGTATGCTT+TGG 0.404922 3_4:+8478445 None:intergenic
TTTGAAGAGAGGGTTGAGTA+AGG 0.405119 3_4:-8477531 Msa0488560:CDS
AGAGGAAAGCTTGTTCTTGA+TGG 0.407337 3_4:-8478346 Msa0488560:CDS
CGTCGCGTAGTTGCCGGATC+TGG 0.407365 3_4:+8479781 None:intergenic
TTTCCGGGTTCTTTCAATCA+TGG 0.410122 3_4:-8478380 Msa0488560:exon
ACATTTGGATGGATTGAATT+GGG 0.413686 3_4:-8477306 Msa0488560:CDS
ATTAATAAGAATATTGGGTT+GGG 0.417432 3_4:-8477965 Msa0488560:CDS
AATGATTTGGTCTGGTGATA+AGG 0.419634 3_4:+8479727 None:intergenic
GAGTTTGAGAAGATGAAGGC+AGG 0.420112 3_4:-8477632 Msa0488560:CDS
CATGAAAGGAAGATGAATAG+TGG 0.421194 3_4:+8478475 None:intergenic
AAAGAGATGGAGAAGAAGAT+TGG 0.422292 3_4:-8477662 Msa0488560:CDS
AGAGAAGGACATGGTGTTGA+AGG 0.427494 3_4:-8473823 Msa0488560:CDS
TTTGATAATTCTGTATTGGC+AGG 0.432755 3_4:-8478826 Msa0488560:five_prime_UTR
AGAATTGGTTTCAGAATCCT+AGG 0.434255 3_4:-8477793 Msa0488560:CDS
GCAACCTAATACGTCACATT+TGG 0.438474 3_4:-8477321 Msa0488560:CDS
TCAGGTAGAATACTAGTCAT+TGG 0.439881 3_4:-8478870 Msa0488560:five_prime_UTR
TGAGATTCTTGATGATAAAT+GGG 0.439908 3_4:-8477381 Msa0488560:CDS
GTAACAGAACGTTGCAATCT+GGG 0.441464 3_4:-8478270 Msa0488560:CDS
ATTTGAAAAGTGAAGAAGTT+CGG 0.449189 3_4:+8481356 None:intergenic
GCATGTTATGATTGGTATAG+TGG 0.453566 3_4:-8477771 Msa0488560:CDS
CGTTCTGAAATTTATGAATG+AGG 0.454988 3_4:+8481433 None:intergenic
CAATCTGGGTATTTGAATCT+GGG 0.456335 3_4:-8478256 Msa0488560:CDS
CATTCCTCCTACATTGTGTT+GGG 0.460494 3_4:-8473720 Msa0488560:three_prime_UTR
AATATTGGGTTGGGTTGTAA+AGG 0.464328 3_4:-8477956 Msa0488560:CDS
ACCTAAAGTCTACGAGAAGT+TGG 0.465177 3_4:-8473971 Msa0488560:CDS
TTGTTGAAGCTTTGAAGAGA+GGG 0.466119 3_4:-8477541 Msa0488560:CDS
ATTACTATGCACTGAGTCAC+TGG 0.466474 3_4:-8473499 Msa0488560:three_prime_UTR
AATCCTAGGCATGTTATGAT+TGG 0.472024 3_4:-8477779 Msa0488560:CDS
AACGAAGAACGAAACGAAGA+AGG 0.472297 3_4:+8481380 None:intergenic
ACTGTGTTTGGTGAAGAAAA+GGG 0.472337 3_4:-8477470 Msa0488560:CDS
ATCTAAAAGCTTAGAATCGC+CGG 0.472748 3_4:+8473939 None:intergenic
TTTGATGAGTGGAAATTTGT+GGG 0.491964 3_4:+8478435 None:intergenic
TGCAGAAGAAGCAATGGATT+AGG 0.492005 3_4:-8473602 Msa0488560:three_prime_UTR
TCCTCACTCTTACACTTTCA+GGG 0.494164 3_4:+8477579 None:intergenic
GTTCTGAAATTTATGAATGA+GGG 0.497020 3_4:+8481434 None:intergenic
GATTAATAAGAATATTGGGT+TGG 0.498993 3_4:-8477966 Msa0488560:CDS
GAAAGTGGAGGGAAAGTTGA+AGG 0.499097 3_4:-8477422 Msa0488560:CDS
GCTACCATACTCTGAATCTC+AGG 0.503263 3_4:+8473663 None:intergenic
TAATCAAAGCCGACAAGGAT+AGG 0.503785 3_4:-8478792 Msa0488560:five_prime_UTR
AATATTAGGGTTGGTTCTCA+AGG 0.503963 3_4:-8478055 Msa0488560:CDS
CCTAATACGTCACATTTGGA+TGG 0.504235 3_4:-8477317 Msa0488560:CDS
GGATGTAGAAAGAGTGTTCA+CGG 0.507138 3_4:+8478510 None:intergenic
AATGATTACCTTCTGGAGAA+AGG 0.507195 3_4:+8476675 None:intergenic
ATTAGTGCATTGACTGAAAG+TGG 0.507872 3_4:-8477437 Msa0488560:CDS
GTTATGATTGGTATAGTGGT+TGG 0.507924 3_4:-8477767 Msa0488560:CDS
CTTCTATTAGTTGCATCCGC+TGG 0.508982 3_4:-8474012 Msa0488560:CDS
CCTAAAGTCTACGAGAAGTT+GGG 0.509175 3_4:-8473970 Msa0488560:CDS
AATAATAAGAATATTAGGGT+TGG 0.510133 3_4:-8478064 Msa0488560:CDS
TCACGGGTGACGCACACACG+TGG 0.513046 3_4:+8478527 None:intergenic
GGGTTCTTTCAATCATGGCT+TGG 0.514869 3_4:-8478375 Msa0488560:exon
ACATTCCTCCTACATTGTGT+TGG 0.515234 3_4:-8473721 Msa0488560:three_prime_UTR
AGGGGATGACAAAGAATATG+TGG 0.517207 3_4:-8476779 Msa0488560:CDS
ATGAAAGGAAGATGAATAGT+GGG 0.517888 3_4:+8478476 None:intergenic
TTTGGTGGTGAATGATCCTA+TGG 0.519554 3_4:-8477279 Msa0488560:CDS
AAAATTCTTACTTGTGAAAG+GGG 0.521206 3_4:+8478580 None:intergenic
TTGCCGGATCTGGCATCAAA+AGG 0.521445 3_4:+8479791 None:intergenic
TACGGCTTCCTTTCTCCAGA+AGG 0.521905 3_4:-8476683 Msa0488560:intron
GAGAGAGTTTGAGAAGATGA+AGG 0.524062 3_4:-8477636 Msa0488560:CDS
ATAAATGGGTTCAGAAGAGT+AGG 0.531439 3_4:-8477367 Msa0488560:CDS
CTTCCCACCAGGTAAGCAAA+AGG 0.542507 3_4:+8477250 None:intergenic
CTGCAAGTGAATACATTGCA+TGG 0.544679 3_4:-8473572 Msa0488560:three_prime_UTR
ATTGTTGAAGCTTTGAAGAG+AGG 0.546244 3_4:-8477542 Msa0488560:CDS
AAGTTGAAGGGAATTGGCAT+CGG 0.548246 3_4:-8477409 Msa0488560:CDS
ACTGGCTCAAGCTGAGGTGA+TGG 0.548873 3_4:-8473875 Msa0488560:CDS
ATCAAGTGCAGAAGAAGCAA+TGG 0.548877 3_4:-8473608 Msa0488560:three_prime_UTR
AGTTGAAGGGAATTGGCATC+GGG 0.552278 3_4:-8477408 Msa0488560:CDS
GTCTTACCACAGAGGAGTAG+AGG 0.555856 3_4:+8479672 None:intergenic
ACGAAGAACGAAACGAAGAA+GGG 0.556139 3_4:+8481381 None:intergenic
AAGCAAAAGGCATTAACCAT+AGG 0.561244 3_4:+8477263 None:intergenic
AGAGATGGAGAAGAAGATTG+GGG 0.562312 3_4:-8477660 Msa0488560:CDS
GCTTTGGATTGAAGCATGAA+AGG 0.564967 3_4:+8478461 None:intergenic
CCACAGAGGAGTAGAGGAGA+AGG 0.567342 3_4:+8479678 None:intergenic
ATACCAATCATAACATGCCT+AGG 0.568681 3_4:+8477776 None:intergenic
GAAATTGAAGCTGATTACAT+TGG 0.569179 3_4:-8474036 Msa0488560:CDS
AGATGAAACCCTAGAAGTCA+AGG 0.570403 3_4:+8478315 None:intergenic
GTGGCCAGACACAGTGCTGA+GGG 0.570445 3_4:-8476798 Msa0488560:CDS
GGTTGAGTAAGGAGAATGTG+TGG 0.571308 3_4:-8477520 Msa0488560:CDS
GGGTGTGTGATTCGTGAAGA+AGG 0.573392 3_4:+8478548 None:intergenic
CTGTGTTTGGTGAAGAAAAG+GGG 0.574536 3_4:-8477469 Msa0488560:CDS
GATCTGGCATCAAAAGGTGA+TGG 0.577996 3_4:+8479797 None:intergenic
TCTTACTTGTGAAAGGGGAA+AGG 0.585595 3_4:+8478585 None:intergenic
GCAGTCTCCCAACACAATGT+AGG 0.592645 3_4:+8473713 None:intergenic
GTCTCCCAACACAATGTAGG+AGG 0.595993 3_4:+8473716 None:intergenic
TAATTTGGAAATAAGTTCCG+TGG 0.596738 3_4:+8478642 None:intergenic
AGCAACTATTATTGGACATG+AGG 0.602186 3_4:-8477177 Msa0488560:intron
GAATAGTGGGAGAAAATGGA+AGG 0.604703 3_4:+8478489 None:intergenic
AAAGTGGAGGGAAAGTTGAA+GGG 0.608573 3_4:-8477421 Msa0488560:CDS
ATCATGGCTTGGTATAGAAG+AGG 0.608651 3_4:-8478364 Msa0488560:CDS
AAGCCATGATTGAAAGAACC+CGG 0.611194 3_4:+8478377 None:intergenic
CTTATGATAGCTCAATCTCA+AGG 0.613970 3_4:+8478983 None:intergenic
GATGTAGAAAGAGTGTTCAC+GGG 0.614651 3_4:+8478511 None:intergenic
AACACAACTATCTTCCCACC+AGG 0.619918 3_4:+8477239 None:intergenic
AGAGTAACAGATTTCAAGAG+TGG 0.621766 3_4:+8473641 None:intergenic
GTGCATTGACTGAAAGTGGA+GGG 0.623353 3_4:-8477433 Msa0488560:CDS
AGAATTACTGGCTCAAGCTG+AGG 0.632399 3_4:-8473881 Msa0488560:CDS
CGCTGGCTATGATCCACGTG+TGG 0.635218 3_4:-8473995 Msa0488560:CDS
ATATATAAGAATGTAAGAGA+AGG 0.642352 3_4:-8473838 Msa0488560:CDS
AGAAGAAGCAATGGATTAGG+TGG 0.644261 3_4:-8473599 Msa0488560:three_prime_UTR
TTTCAAGAGATTAGACAACA+GGG 0.648905 3_4:-8477897 Msa0488560:CDS
GGGGATGACAAAGAATATGT+GGG 0.650366 3_4:-8476778 Msa0488560:CDS
GTTTGGTGAAGAAAAGGGGA+AGG 0.654958 3_4:-8477465 Msa0488560:CDS
TGTGGCCAGACACAGTGCTG+AGG 0.662397 3_4:-8476799 Msa0488560:CDS
TAATTAGGTTGGACATGCTG+TGG 0.665392 3_4:-8476817 Msa0488560:intron
TTCAAGAGATTAGACAACAG+GGG 0.668530 3_4:-8477896 Msa0488560:CDS
ATGTGGATCCTCAAAATGTG+CGG 0.671867 3_4:-8477838 Msa0488560:CDS
ATTGGTAATCAAAGCCGACA+AGG 0.673145 3_4:-8478797 Msa0488560:five_prime_UTR
AGTGCATTGACTGAAAGTGG+AGG 0.673147 3_4:-8477434 Msa0488560:CDS
TAGACTTTAGGTGCCACACG+TGG 0.678929 3_4:+8473982 None:intergenic
CCTTCTCCTCTACTCCTCTG+TGG 0.685674 3_4:-8479678 Msa0488560:intron
CACGGGTGACGCACACACGT+GGG 0.686760 3_4:+8478528 None:intergenic
AAGAATGTAAGAGAAGGACA+TGG 0.701425 3_4:-8473832 Msa0488560:CDS
CACACGTGGATCATAGCCAG+CGG 0.708062 3_4:+8473996 None:intergenic
TGGCCAGACACAGTGCTGAG+GGG 0.712731 3_4:-8476797 Msa0488560:CDS
TGGTGATGTGAGAGATTGAG+CGG 0.713310 3_4:+8479824 None:intergenic
CATCAAAAGGTGATGGACAG+TGG 0.714241 3_4:+8479804 None:intergenic
TAGAATTCCGAATATTGACA+AGG 0.715563 3_4:+8478941 None:intergenic
ACCCTGAAAGTGTAAGAGTG+AGG 0.750161 3_4:-8477580 Msa0488560:CDS
CACAGATGGTCTTACCACAG+AGG 0.750342 3_4:+8479664 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTTATTTTTTTA+TGG + chr3_4:8479911-8479930 None:intergenic 0.0%
!!! GTATAATTGATTTTATTTAA+TGG - chr3_4:8474543-8474562 Msa0488560:intron 10.0%
!!! TTTTTTTAAACTAAATCATT+GGG + chr3_4:8475664-8475683 None:intergenic 10.0%
!!! TTTTTTTTAAACTAAATCAT+TGG + chr3_4:8475665-8475684 None:intergenic 10.0%
!! TAAAAAAAAAAAAGAAAAAG+TGG - chr3_4:8475676-8475695 Msa0488560:intron 10.0%
!! TGAAAATAATAAGAATATTA+GGG - chr3_4:8476841-8476860 Msa0488560:intron 10.0%
!!! AATTTTGATTTATCATATAT+TGG - chr3_4:8479963-8479982 Msa0488560:intron 10.0%
!!! AAAATGTACAAATTTAAAAT+TGG + chr3_4:8480449-8480468 None:intergenic 10.0%
!!! AAAATATTTTGAAAAAGTTA+AGG - chr3_4:8481140-8481159 Msa0488560:intron 10.0%
!! ATAAAAAACTAAGGTAAAAT+AGG - chr3_4:8473442-8473461 Msa0488560:three_prime_UTR 15.0%
!! TAATATAGTTCAATTTAAAG+CGG + chr3_4:8473690-8473709 None:intergenic 15.0%
!!! AAAAATGTAATTTTTTGTTG+TGG - chr3_4:8473787-8473806 Msa0488560:three_prime_UTR 15.0%
!!! AAAATGTAATTTTTTGTTGT+GGG - chr3_4:8473788-8473807 Msa0488560:three_prime_UTR 15.0%
!!! TATGTTTTTATAAGCTATAT+TGG - chr3_4:8474097-8474116 Msa0488560:intron 15.0%
!! ATGAAAATAATAAGCTATAT+TGG - chr3_4:8474127-8474146 Msa0488560:intron 15.0%
!!! TAAAATCTCTATTTATTTTC+AGG - chr3_4:8474394-8474413 Msa0488560:intron 15.0%
!! ACAAATTTAAAAGATAATGA+AGG + chr3_4:8475330-8475349 None:intergenic 15.0%
!! ATTAGGGTTATTTATTTATT+AGG - chr3_4:8475518-8475537 Msa0488560:intron 15.0%
!!! ATGAAAAAATTGAAATTTTG+TGG + chr3_4:8476501-8476520 None:intergenic 15.0%
!! GTGAAAATAATAAGAATATT+AGG - chr3_4:8476840-8476859 Msa0488560:intron 15.0%
!!! TTTCTAAGATATTAGATAAA+AGG - chr3_4:8476912-8476931 Msa0488560:intron 15.0%
!!! TTCTAAGATATTAGATAAAA+GGG - chr3_4:8476913-8476932 Msa0488560:intron 15.0%
!!! TTTGAGATTAATAAGAATAT+TGG - chr3_4:8476938-8476957 Msa0488560:intron 15.0%
!! TTGAGATTAATAAGAATATT+GGG - chr3_4:8476939-8476958 Msa0488560:intron 15.0%
!!! TTTTTATAACTGTGTATTTT+GGG - chr3_4:8477173-8477192 Msa0488560:intron 15.0%
!!! ATAACAATGATAAGTTTTTA+AGG + chr3_4:8480048-8480067 None:intergenic 15.0%
!!! ATATTTTCACAAAACAATTA+TGG + chr3_4:8481127-8481146 None:intergenic 15.0%
!!! ATTTTATTGAACTCATTGTT+AGG - chr3_4:8473634-8473653 Msa0488560:three_prime_UTR 20.0%
!!! TTTTATTGAACTCATTGTTA+GGG - chr3_4:8473635-8473654 Msa0488560:three_prime_UTR 20.0%
!!! AATAAGTTGAAAAAAGCTTA+TGG - chr3_4:8474162-8474181 Msa0488560:intron 20.0%
!!! ATAAAAATGGTTTTAGCTTT+TGG - chr3_4:8474576-8474595 Msa0488560:intron 20.0%
!! TTCCTCCTAATTAATAAATT+GGG + chr3_4:8474716-8474735 None:intergenic 20.0%
!! TTTCCTCCTAATTAATAAAT+TGG + chr3_4:8474717-8474736 None:intergenic 20.0%
!! TTGAAAGTAGAATTCATATA+AGG + chr3_4:8475382-8475401 None:intergenic 20.0%
!! TTATATGAATTCTACTTTCA+AGG - chr3_4:8475381-8475400 Msa0488560:intron 20.0%
!! TATATGAATTCTACTTTCAA+GGG - chr3_4:8475382-8475401 Msa0488560:intron 20.0%
!! AGGTTCAAAAGTTAAAAATT+GGG + chr3_4:8475456-8475475 None:intergenic 20.0%
!! AAGGTTCAAAAGTTAAAAAT+TGG + chr3_4:8475457-8475476 None:intergenic 20.0%
!! AATCGTTTGAAAAATTCTTA+AGG + chr3_4:8475476-8475495 None:intergenic 20.0%
!! CAATATCTATTTATGCATAA+TGG + chr3_4:8475829-8475848 None:intergenic 20.0%
!!! TTTTTTACCCTATTTTTTTC+TGG + chr3_4:8475893-8475912 None:intergenic 20.0%
!!! CATTTTTTATATTCCATTTC+AGG - chr3_4:8476021-8476040 Msa0488560:intron 20.0%
!! AAAAAGTAATACAAAACATG+AGG + chr3_4:8476065-8476084 None:intergenic 20.0%
!!! CTTTTTTGATAATTCTGTAT+TGG - chr3_4:8476079-8476098 Msa0488560:intron 20.0%
!!! AATTGATTCATCTTGTTATT+GGG + chr3_4:8476233-8476252 None:intergenic 20.0%
!!! AAATTGATTCATCTTGTTAT+TGG + chr3_4:8476234-8476253 None:intergenic 20.0%
!! AAAAATTCTTACTTGTGAAA+GGG + chr3_4:8476333-8476352 None:intergenic 20.0%
!! AAAAAATTCTTACTTGTGAA+AGG + chr3_4:8476334-8476353 None:intergenic 20.0%
!!! TTTTTCATCAATTTAGTTTC+CGG - chr3_4:8476513-8476532 Msa0488560:intron 20.0%
!! AATAATAAGAATATTAGGGT+TGG - chr3_4:8476845-8476864 Msa0488560:intron 20.0%
!! ATTAATAAGAATATTGGGTT+GGG - chr3_4:8476944-8476963 Msa0488560:intron 20.0%
!!! GTTTTTATAACTGTGTATTT+TGG - chr3_4:8477172-8477191 Msa0488560:intron 20.0%
!!! TTTGATTCGTTTAACTTATT+AGG - chr3_4:8477761-8477780 Msa0488560:CDS 20.0%
!! GAACAATACAAAAATTCAAT+TGG + chr3_4:8478280-8478299 None:intergenic 20.0%
!! AAGTGAAAAACATGAAATTA+GGG - chr3_4:8478386-8478405 Msa0488560:five_prime_UTR 20.0%
!!! ATTTTGGCCTTTTATTATTT+TGG - chr3_4:8478798-8478817 Msa0488560:five_prime_UTR 20.0%
!!! ATATATTTTCTCTTAAAGTG+TGG + chr3_4:8478973-8478992 None:intergenic 20.0%
!!! TAAGATGCTATTGATTAAAA+TGG - chr3_4:8479056-8479075 Msa0488560:intron 20.0%
!! TTATTGTATAAATGAAGAGT+TGG + chr3_4:8479886-8479905 None:intergenic 20.0%
!! AAATTCCAATTCATATTTAG+AGG + chr3_4:8479948-8479967 None:intergenic 20.0%
!! AATGGAATATGAAAATTTGA+TGG + chr3_4:8480636-8480655 None:intergenic 20.0%
!!! CATTAGTTTTGTTTATACTT+GGG + chr3_4:8480743-8480762 None:intergenic 20.0%
!!! ACATTAGTTTTGTTTATACT+TGG + chr3_4:8480744-8480763 None:intergenic 20.0%
!!! ATTTTAACTATACACAAATG+TGG - chr3_4:8480765-8480784 Msa0488560:intron 20.0%
!! GAAAAAATGTGGAAAAAATT+GGG + chr3_4:8480847-8480866 None:intergenic 20.0%
!! TGAAAAAATGTGGAAAAAAT+TGG + chr3_4:8480848-8480867 None:intergenic 20.0%
!!! AATTTTTTCCACATTTTTTC+AGG - chr3_4:8480847-8480866 Msa0488560:intron 20.0%
!! ATATATAAGAATGTAAGAGA+AGG - chr3_4:8481071-8481090 Msa0488560:intron 20.0%
!!! GTTCTGAAATTTATGAATGA+GGG + chr3_4:8473478-8473497 None:intergenic 25.0%
! ATTTGAAAAGTGAAGAAGTT+CGG + chr3_4:8473556-8473575 None:intergenic 25.0%
! TTGTACGTTTCTGATAATTT+AGG - chr3_4:8473898-8473917 Msa0488560:CDS 25.0%
! TCATGAACAAACAAAACTAA+GGG + chr3_4:8473962-8473981 None:intergenic 25.0%
! ATCATGAACAAACAAAACTA+AGG + chr3_4:8473963-8473982 None:intergenic 25.0%
! TGATTGTGTTTGGTTATATA+GGG - chr3_4:8474490-8474509 Msa0488560:intron 25.0%
!! TGGTGAGTTTAAGATAAAAA+TGG - chr3_4:8474563-8474582 Msa0488560:intron 25.0%
! CAACTCCCAATTTATTAATT+AGG - chr3_4:8474708-8474727 Msa0488560:intron 25.0%
!! CTATTTTACAATACACACAA+GGG + chr3_4:8474934-8474953 None:intergenic 25.0%
! GGTTCAAAAGTTAAAAATTG+GGG + chr3_4:8475455-8475474 None:intergenic 25.0%
! ATTAGGAAGATTGAGTTATT+TGG - chr3_4:8475535-8475554 Msa0488560:intron 25.0%
! GTTATTCAGGGTTATTATTT+AGG - chr3_4:8475579-8475598 Msa0488560:intron 25.0%
!!! CTTCAAATCATGTTTTTTTC+TGG + chr3_4:8475784-8475803 None:intergenic 25.0%
! ATTTATTTATTCTGTTGACC+AGG - chr3_4:8475859-8475878 Msa0488560:intron 25.0%
!!! TTTTAAGATGATGAGATTGA+AGG + chr3_4:8476190-8476209 None:intergenic 25.0%
!! ATTTTTCTAATTGAGTTCCA+CGG - chr3_4:8476250-8476269 Msa0488560:intron 25.0%
!!! ATTTTCTGGTCTAAGTAATT+TGG + chr3_4:8476285-8476304 None:intergenic 25.0%
! AAAATTCTTACTTGTGAAAG+GGG + chr3_4:8476332-8476351 None:intergenic 25.0%
!!! TTTTCATCAATTTAGTTTCC+GGG - chr3_4:8476514-8476533 Msa0488560:intron 25.0%
!!! AACAAAAGTGCTAACTTTAA+TGG - chr3_4:8476677-8476696 Msa0488560:intron 25.0%
!!! ACAAAAGTGCTAACTTTAAT+GGG - chr3_4:8476678-8476697 Msa0488560:intron 25.0%
!! CTTCATTTTCTTCAATTTCT+AGG - chr3_4:8476798-8476817 Msa0488560:CDS 25.0%
! GATTAATAAGAATATTGGGT+TGG - chr3_4:8476943-8476962 Msa0488560:intron 25.0%
!! TTGAAGTTAATACGGATTTT+AGG - chr3_4:8477038-8477057 Msa0488560:intron 25.0%
!!! TTTTAGGAGATTATACTATG+TGG - chr3_4:8477054-8477073 Msa0488560:intron 25.0%
!! ATGAGATTCTTGATGATAAA+TGG - chr3_4:8477527-8477546 Msa0488560:CDS 25.0%
!! TGAGATTCTTGATGATAAAT+GGG - chr3_4:8477528-8477547 Msa0488560:CDS 25.0%
!! TTTAACTTATTAGGCTTGTT+TGG - chr3_4:8477770-8477789 Msa0488560:CDS 25.0%
! AGACTGTTTAAGAGATATTA+TGG - chr3_4:8477833-8477852 Msa0488560:CDS 25.0%
!!! TTAAGCTATTTTTGCAAACA+AGG - chr3_4:8478010-8478029 Msa0488560:CDS 25.0%
!! TTTTGCAGTTTAACATGTTT+AGG - chr3_4:8478039-8478058 Msa0488560:CDS 25.0%
! AATTGGTTATAAAGAGACAA+CGG + chr3_4:8478263-8478282 None:intergenic 25.0%
! GAAGTGAAAAACATGAAATT+AGG - chr3_4:8478385-8478404 Msa0488560:five_prime_UTR 25.0%
! AATAGAAGAATTCATTGTGA+AGG + chr3_4:8478538-8478557 None:intergenic 25.0%
! ATTCGCCAAAAGAAAAAAAA+AGG - chr3_4:8478771-8478790 Msa0488560:five_prime_UTR 25.0%
!!! TACTTATAGCTACTTTTATC+AGG + chr3_4:8478895-8478914 None:intergenic 25.0%
! TGATAAAAGTAGCTATAAGT+AGG - chr3_4:8478894-8478913 Msa0488560:five_prime_UTR 25.0%
! TCATTATGTGATCTTTCATA+AGG - chr3_4:8479125-8479144 Msa0488560:intron 25.0%
! CATTATGTGATCTTTCATAA+GGG - chr3_4:8479126-8479145 Msa0488560:intron 25.0%
! ATTATGTGATCTTTCATAAG+GGG - chr3_4:8479127-8479146 Msa0488560:intron 25.0%
! TCAAAATCGTAAATTGTTGT+GGG - chr3_4:8479377-8479396 Msa0488560:intron 25.0%
! TGAATAACAAGAAACAACTT+CGG + chr3_4:8479544-8479563 None:intergenic 25.0%
! ATTTACAAAAAAAAACTCGC+AGG + chr3_4:8479673-8479692 None:intergenic 25.0%
! AAATTTCTGTCAAGTACTAA+GGG + chr3_4:8479850-8479869 None:intergenic 25.0%
! TAAATTTCTGTCAAGTACTA+AGG + chr3_4:8479851-8479870 None:intergenic 25.0%
!!! ATGATAAGTTTTTAAGGAGA+GGG + chr3_4:8480042-8480061 None:intergenic 25.0%
!!! AATGATAAGTTTTTAAGGAG+AGG + chr3_4:8480043-8480062 None:intergenic 25.0%
! CCTATGCAAATAAATTACTT+TGG + chr3_4:8480326-8480345 None:intergenic 25.0%
! CCAAAGTAATTTATTTGCAT+AGG - chr3_4:8480323-8480342 Msa0488560:intron 25.0%
! TAAATGTTCTTGGAGTTATT+AGG - chr3_4:8480352-8480371 Msa0488560:intron 25.0%
! ATTCTATAATATCCTAGAGT+AGG + chr3_4:8480378-8480397 None:intergenic 25.0%
!! CATTTACATTTGTTTCTTGT+TGG - chr3_4:8480530-8480549 Msa0488560:intron 25.0%
! GAAGATTAAAATGAAACCAT+AGG + chr3_4:8480569-8480588 None:intergenic 25.0%
!! CGTTCTGAAATTTATGAATG+AGG + chr3_4:8473479-8473498 None:intergenic 30.0%
! TTGTGTATTTGAAGTCGAAT+TGG - chr3_4:8473872-8473891 Msa0488560:CDS 30.0%
ATTCTATGACAAATGTTAGC+TGG - chr3_4:8473931-8473950 Msa0488560:CDS 30.0%
!! TGCTAGAAAAATAGCTTGTT+GGG + chr3_4:8474050-8474069 None:intergenic 30.0%
! TTGCTAGAAAAATAGCTTGT+TGG + chr3_4:8474051-8474070 None:intergenic 30.0%
GATCCTATGAATTTGATCTA+GGG + chr3_4:8474283-8474302 None:intergenic 30.0%
!! TTAATGACTTGTTGGATCTA+AGG - chr3_4:8474322-8474341 Msa0488560:intron 30.0%
CTATTATCAGTGAAAAGTTG+TGG - chr3_4:8474456-8474475 Msa0488560:intron 30.0%
GTGATTGTGTTTGGTTATAT+AGG - chr3_4:8474489-8474508 Msa0488560:intron 30.0%
GATTGTGTTTGGTTATATAG+GGG - chr3_4:8474491-8474510 Msa0488560:intron 30.0%
CTCCCAATTTATTAATTAGG+AGG - chr3_4:8474711-8474730 Msa0488560:intron 30.0%
! CCTATTTTACAATACACACA+AGG + chr3_4:8474935-8474954 None:intergenic 30.0%
CCTTGTGTGTATTGTAAAAT+AGG - chr3_4:8474932-8474951 Msa0488560:intron 30.0%
CTTAACTGATATCATAACAG+AGG - chr3_4:8475023-8475042 Msa0488560:intron 30.0%
!! ACGAAAAAAATGATTTGGTC+TGG + chr3_4:8475193-8475212 None:intergenic 30.0%
!!! ACCAAATCATTTTTTTCGTG+AGG - chr3_4:8475194-8475213 Msa0488560:intron 30.0%
TCCTCACGAAAAAAATGATT+TGG + chr3_4:8475198-8475217 None:intergenic 30.0%
GAAGAAGAAAAACGAATAGA+GGG + chr3_4:8475274-8475293 None:intergenic 30.0%
GAGAAGGAATAACATGAAAA+GGG + chr3_4:8475296-8475315 None:intergenic 30.0%
AGAGAAGGAATAACATGAAA+AGG + chr3_4:8475297-8475316 None:intergenic 30.0%
ATGTTATTCCTTCTCTCTTA+TGG - chr3_4:8475301-8475320 Msa0488560:intron 30.0%
TGTTATTCCTTCTCTCTTAT+GGG - chr3_4:8475302-8475321 Msa0488560:intron 30.0%
AATAACTCAATCTTCCTCAA+TGG + chr3_4:8475501-8475520 None:intergenic 30.0%
TTGAGGAAGATTGAGTTATT+AGG - chr3_4:8475501-8475520 Msa0488560:intron 30.0%
TGAGGAAGATTGAGTTATTA+GGG - chr3_4:8475502-8475521 Msa0488560:intron 30.0%
CTGAATAACATAGAAAAGTC+CGG + chr3_4:8475568-8475587 None:intergenic 30.0%
! GGACTTTTCTATGTTATTCA+GGG - chr3_4:8475567-8475586 Msa0488560:intron 30.0%
TAGAATTCCGAATATTGACA+AGG + chr3_4:8475971-8475990 None:intergenic 30.0%
! ATTATCTTATGCTTTGTTGC+AGG - chr3_4:8475990-8476009 Msa0488560:intron 30.0%
! TTTGATAATTCTGTATTGGC+AGG - chr3_4:8476083-8476102 Msa0488560:intron 30.0%
ATGATGAGATTGAAGGAAAT+AGG + chr3_4:8476183-8476202 None:intergenic 30.0%
TAATTTGGAAATAAGTTCCG+TGG + chr3_4:8476270-8476289 None:intergenic 30.0%
! AACAATCGAATGACATTTTC+TGG + chr3_4:8476299-8476318 None:intergenic 30.0%
ATGAAAGGAAGATGAATAGT+GGG + chr3_4:8476436-8476455 None:intergenic 30.0%
TTTGATGAGTGGAAATTTGT+GGG + chr3_4:8476477-8476496 None:intergenic 30.0%
! TTTTGATGAGTGGAAATTTG+TGG + chr3_4:8476478-8476497 None:intergenic 30.0%
!!! AATTTTGTGGTTTTGATGAG+TGG + chr3_4:8476488-8476507 None:intergenic 30.0%
! TTTTCATACCTTGACTTCTA+GGG - chr3_4:8476586-8476605 Msa0488560:intron 30.0%
CTGTTACTAGGTAGAAAAAT+TGG + chr3_4:8476626-8476645 None:intergenic 30.0%
GATTGCAAAATTCTGTTACT+AGG + chr3_4:8476731-8476750 None:intergenic 30.0%
! AGTAACAGAATTTTGCAATC+TGG - chr3_4:8476731-8476750 Msa0488560:CDS 30.0%
! GTAACAGAATTTTGCAATCT+GGG - chr3_4:8476732-8476751 Msa0488560:CDS 30.0%
CAATCTGGGTATTTGAATTT+GGG - chr3_4:8476746-8476765 Msa0488560:CDS 30.0%
! TCTTCAATTTCTAGGAGATT+AGG - chr3_4:8476806-8476825 Msa0488560:CDS 30.0%
TCTCAAGGTTGTAACTTTAA+TGG - chr3_4:8476869-8476888 Msa0488560:intron 30.0%
CTCAAGGTTGTAACTTTAAT+GGG - chr3_4:8476870-8476889 Msa0488560:intron 30.0%
!! GTAAAGGTGTTAGCTTTAAT+AGG - chr3_4:8476969-8476988 Msa0488560:intron 30.0%
ATTTCAAGAGATTAGACAAC+AGG - chr3_4:8477011-8477030 Msa0488560:intron 30.0%
TTTCAAGAGATTAGACAACA+GGG - chr3_4:8477012-8477031 Msa0488560:intron 30.0%
!! AACTGTGTATTTTGGGAATA+TGG - chr3_4:8477180-8477199 Msa0488560:CDS 30.0%
AAATGTGTTCTCTTCGTATA+AGG + chr3_4:8477214-8477233 None:intergenic 30.0%
!! ACATTTGGATGGATTGAATT+GGG - chr3_4:8477603-8477622 Msa0488560:CDS 30.0%
CTTAAGCGCTTATATGATAT+AGG - chr3_4:8477967-8477986 Msa0488560:CDS 30.0%
GACTCATTTCATTGATACAT+AGG - chr3_4:8478313-8478332 Msa0488560:CDS 30.0%
! ATAGGTAATGTTTGTTAGAC+AGG - chr3_4:8478331-8478350 Msa0488560:CDS 30.0%
TTTGTTAGACAGGTTAGAAT+AGG - chr3_4:8478341-8478360 Msa0488560:CDS 30.0%
GCTACATGACTAAACATATA+GGG + chr3_4:8478501-8478520 None:intergenic 30.0%
TGCTACATGACTAAACATAT+AGG + chr3_4:8478502-8478521 None:intergenic 30.0%
!!! TCATGTAGCAATGTTGTTTT+AGG - chr3_4:8478512-8478531 Msa0488560:five_prime_UTR 30.0%
! TTGTGTTTGATTTCGTCTTA+TGG + chr3_4:8478565-8478584 None:intergenic 30.0%
ATTTGAATGTAGTATGAGCA+TGG - chr3_4:8478595-8478614 Msa0488560:five_prime_UTR 30.0%
!!! TGCGACCTTTTTTTTTCTTT+TGG + chr3_4:8478779-8478798 None:intergenic 30.0%
! GAAAAAAAAAGGTCGCATTT+TGG - chr3_4:8478782-8478801 Msa0488560:five_prime_UTR 30.0%
! TTTCTCTTAAAGTGTGGTTT+TGG + chr3_4:8478967-8478986 None:intergenic 30.0%
TGAAATTGGTAGAATCACAA+TGG - chr3_4:8479031-8479050 Msa0488560:five_prime_UTR 30.0%
GTCAAAATCGTAAATTGTTG+TGG - chr3_4:8479376-8479395 Msa0488560:intron 30.0%
CTTATTTCAGTAGAAAAGCT+TGG + chr3_4:8479449-8479468 None:intergenic 30.0%
GATAGATGAACCTTCAAAAT+AGG - chr3_4:8479614-8479633 Msa0488560:intron 30.0%
!! GAAGTTACTTCCTATTTTGA+AGG + chr3_4:8479627-8479646 None:intergenic 30.0%
AGGAAGTAACTTCAATTTGT+AGG - chr3_4:8479634-8479653 Msa0488560:intron 30.0%
AAAAAAAAACTCGCAGGTAT+GGG + chr3_4:8479667-8479686 None:intergenic 30.0%
!! TATGAAGTGTTGCCAAATAT+CGG - chr3_4:8479695-8479714 Msa0488560:five_prime_UTR 30.0%
CAACACAAAAACTGTACATA+TGG + chr3_4:8479811-8479830 None:intergenic 30.0%
! CATATGTACAGTTTTTGTGT+TGG - chr3_4:8479809-8479828 Msa0488560:five_prime_UTR 30.0%
ACCAACCTCTAAATATGAAT+TGG - chr3_4:8479940-8479959 Msa0488560:intron 30.0%
TCCAATTCATATTTAGAGGT+TGG + chr3_4:8479944-8479963 None:intergenic 30.0%
! TATGGATGTAATTTGTGAGT+AGG + chr3_4:8480142-8480161 None:intergenic 30.0%
GCATGGAATTAATGCAAATA+TGG + chr3_4:8480160-8480179 None:intergenic 30.0%
TTAATTCCATGCTTAGTAGA+AGG - chr3_4:8480168-8480187 Msa0488560:intron 30.0%
TAGGAATGCTTAAATGTTCT+TGG - chr3_4:8480342-8480361 Msa0488560:intron 30.0%
! TGTTGGTTAGATAGTCAAAA+TGG + chr3_4:8480654-8480673 None:intergenic 30.0%
!!! TTTTCCACATTTTTTCAGGA+TGG - chr3_4:8480851-8480870 Msa0488560:intron 30.0%
ATTTCCATCCTGAAAAAATG+TGG + chr3_4:8480858-8480877 None:intergenic 30.0%
GAAATTGAAGCTGATTACAT+TGG - chr3_4:8480873-8480892 Msa0488560:intron 30.0%
TAGAGTTAAGTTCATTGCGT+TGG - chr3_4:8473724-8473743 Msa0488560:three_prime_UTR 35.0%
CAAATACACAACATCTTCTC+TGG + chr3_4:8473863-8473882 None:intergenic 35.0%
!! GAAAAATAGCTTGTTGGGTT+TGG + chr3_4:8474045-8474064 None:intergenic 35.0%
! TAAGTTCTGTGTCACTGTTT+GGG + chr3_4:8474218-8474237 None:intergenic 35.0%
! ATAAGTTCTGTGTCACTGTT+TGG + chr3_4:8474219-8474238 None:intergenic 35.0%
GCACTAGATAAGCTCAAATA+AGG - chr3_4:8474239-8474258 Msa0488560:intron 35.0%
AGACCCTAGATCAAATTCAT+AGG - chr3_4:8474277-8474296 Msa0488560:intron 35.0%
GGATCCTATGAATTTGATCT+AGG + chr3_4:8474284-8474303 None:intergenic 35.0%
TGCTGTTATGTGATTGTGTT+TGG - chr3_4:8474480-8474499 Msa0488560:intron 35.0%
TGATCATTCATCATTGCTGA+TGG + chr3_4:8474690-8474709 None:intergenic 35.0%
GAAGAAGGAGATAAGATTCT+AGG - chr3_4:8474768-8474787 Msa0488560:intron 35.0%
TTCTAGGTATAAGAATGAGC+AGG - chr3_4:8474784-8474803 Msa0488560:intron 35.0%
TCTAGGTATAAGAATGAGCA+GGG - chr3_4:8474785-8474804 Msa0488560:intron 35.0%
AAAGAAGATTCCAGATTCAG+AGG - chr3_4:8474809-8474828 Msa0488560:intron 35.0%
AAGAAGATTCCAGATTCAGA+GGG - chr3_4:8474810-8474829 Msa0488560:intron 35.0%
TATAAAGCCGAATGTGTGTA+CGG + chr3_4:8474872-8474891 None:intergenic 35.0%
TTGAGAAAACAAGACGCATT+TGG - chr3_4:8475155-8475174 Msa0488560:intron 35.0%
!! AATGATTTGGTCTGGTGATA+AGG + chr3_4:8475185-8475204 None:intergenic 35.0%
GGAAGAAGAAAAACGAATAG+AGG + chr3_4:8475275-8475294 None:intergenic 35.0%
TTTCAAACGATTTGCCATTG+AGG - chr3_4:8475484-8475503 Msa0488560:intron 35.0%
! CGGACTTTTCTATGTTATTC+AGG - chr3_4:8475566-8475585 Msa0488560:intron 35.0%
AGGAAGCAACACAAAAATGA+GGG + chr3_4:8475607-8475626 None:intergenic 35.0%
TAGGAAGCAACACAAAAATG+AGG + chr3_4:8475608-8475627 None:intergenic 35.0%
!! CCTCTAAAACTTCAGTATTG+TGG + chr3_4:8475709-8475728 None:intergenic 35.0%
!! CCACAATACTGAAGTTTTAG+AGG - chr3_4:8475706-8475725 Msa0488560:intron 35.0%
TAGCTGATGCATGACATATA+TGG + chr3_4:8475754-8475773 None:intergenic 35.0%
TATTTATTCTGTTGACCAGG+CGG - chr3_4:8475862-8475881 Msa0488560:intron 35.0%
GGCGTATCCAGAAAAAAATA+GGG - chr3_4:8475883-8475902 Msa0488560:intron 35.0%
CTTATGATAGCTCAATCTCA+AGG + chr3_4:8475929-8475948 None:intergenic 35.0%
GACTAGTATTCTACCTGAAA+TGG + chr3_4:8476037-8476056 None:intergenic 35.0%
TCAGGTAGAATACTAGTCAT+TGG - chr3_4:8476039-8476058 Msa0488560:intron 35.0%
! TGTATTGGCAGGAGTAAAAT+TGG - chr3_4:8476094-8476113 Msa0488560:intron 35.0%
TTTGATCTTCCTATCCTTGT+CGG + chr3_4:8476129-8476148 None:intergenic 35.0%
! AGATGAATAGTGGGAGAAAA+TGG + chr3_4:8476427-8476446 None:intergenic 35.0%
CATGAAAGGAAGATGAATAG+TGG + chr3_4:8476437-8476456 None:intergenic 35.0%
! GTTTTCATACCTTGACTTCT+AGG - chr3_4:8476585-8476604 Msa0488560:intron 35.0%
CAATCTGGGTATTTGAATCT+GGG - chr3_4:8476653-8476672 Msa0488560:intron 35.0%
GCAATCTGGGTATTTGAATT+TGG - chr3_4:8476745-8476764 Msa0488560:CDS 35.0%
CACATTAAAGCTAGCATCTT+TGG + chr3_4:8476774-8476793 None:intergenic 35.0%
!! AATATTAGGGTTGGTTCTCA+AGG - chr3_4:8476854-8476873 Msa0488560:intron 35.0%
!! AATATTGGGTTGGGTTGTAA+AGG - chr3_4:8476953-8476972 Msa0488560:intron 35.0%
TTCAAGAGATTAGACAACAG+GGG - chr3_4:8477013-8477032 Msa0488560:intron 35.0%
!!! CAGGGGTTTTGAAGTTAATA+CGG - chr3_4:8477030-8477049 Msa0488560:intron 35.0%
! TTAAAATGCCGCACATTTTG+AGG + chr3_4:8477082-8477101 None:intergenic 35.0%
!! GGATTCTGAAACCAATTCTT+TGG + chr3_4:8477115-8477134 None:intergenic 35.0%
! AGAATTGGTTTCAGAATCCT+AGG - chr3_4:8477116-8477135 Msa0488560:intron 35.0%
AATCCTAGGCATGTTATGAT+TGG - chr3_4:8477130-8477149 Msa0488560:intron 35.0%
ATACCAATCATAACATGCCT+AGG + chr3_4:8477136-8477155 None:intergenic 35.0%
GCATGTTATGATTGGTATAG+TGG - chr3_4:8477138-8477157 Msa0488560:intron 35.0%
GTTATGATTGGTATAGTGGT+TGG - chr3_4:8477142-8477161 Msa0488560:intron 35.0%
!!! GATTTTGATTCCGAAAGAGA+TGG - chr3_4:8477234-8477253 Msa0488560:CDS 35.0%
ATCTTCTTCTCCATCTCTTT+CGG + chr3_4:8477247-8477266 None:intergenic 35.0%
AAAGAGATGGAGAAGAAGAT+TGG - chr3_4:8477247-8477266 Msa0488560:CDS 35.0%
AAGAGATGGAGAAGAAGATT+GGG - chr3_4:8477248-8477267 Msa0488560:CDS 35.0%
!! AAGATGAAGGCAGGTTTTAA+GGG - chr3_4:8477286-8477305 Msa0488560:CDS 35.0%
!! ATTGTTGAAGCTTTGAAGAG+AGG - chr3_4:8477367-8477386 Msa0488560:CDS 35.0%
!! TTGTTGAAGCTTTGAAGAGA+GGG - chr3_4:8477368-8477387 Msa0488560:CDS 35.0%
GCTTCAGAAAATACTGTGTT+TGG - chr3_4:8477427-8477446 Msa0488560:CDS 35.0%
! TACTGTGTTTGGTGAAGAAA+AGG - chr3_4:8477438-8477457 Msa0488560:CDS 35.0%
! ACTGTGTTTGGTGAAGAAAA+GGG - chr3_4:8477439-8477458 Msa0488560:CDS 35.0%
!! ATTAGTGCATTGACTGAAAG+TGG - chr3_4:8477472-8477491 Msa0488560:CDS 35.0%
! ATAAATGGGTTCAGAAGAGT+AGG - chr3_4:8477542-8477561 Msa0488560:CDS 35.0%
GTTCAGAAGAGTAGGAAAAA+GGG - chr3_4:8477550-8477569 Msa0488560:CDS 35.0%
!! CACATTTGGATGGATTGAAT+TGG - chr3_4:8477602-8477621 Msa0488560:CDS 35.0%
! TGGATTGAATTGGGAGATTT+TGG - chr3_4:8477612-8477631 Msa0488560:CDS 35.0%
! ATTGAATTGGGAGATTTTGG+TGG - chr3_4:8477615-8477634 Msa0488560:CDS 35.0%
!! AAGCAAAAGGCATTAACCAT+AGG + chr3_4:8477649-8477668 None:intergenic 35.0%
TGGGAAGATAGTTGTGTTTA+CGG - chr3_4:8477675-8477694 Msa0488560:CDS 35.0%
GCAGAGATAGCAACTATTAT+TGG - chr3_4:8477724-8477743 Msa0488560:CDS 35.0%
AGCAACTATTATTGGACATG+AGG - chr3_4:8477732-8477751 Msa0488560:CDS 35.0%
!! GACATAGTGTTGACAATATC+AGG + chr3_4:8478195-8478214 None:intergenic 35.0%
CTATGTCATCACTTCTCTTA+CGG - chr3_4:8478208-8478227 Msa0488560:CDS 35.0%
! AATGATTACCTTCTGGAGAA+AGG + chr3_4:8478237-8478256 None:intergenic 35.0%
AGCGTGGCCAAAATAATAAA+AGG + chr3_4:8478808-8478827 None:intergenic 35.0%
GCTTTCAAAGTTGAAGTGTA+CGG - chr3_4:8479007-8479026 Msa0488560:five_prime_UTR 35.0%
TTGAAGTGTACGGTTGAAAT+TGG - chr3_4:8479017-8479036 Msa0488560:five_prime_UTR 35.0%
TGAAGACTGATCGATAAAAC+AGG - chr3_4:8479098-8479117 Msa0488560:intron 35.0%
GAAGACTGATCGATAAAACA+GGG - chr3_4:8479099-8479118 Msa0488560:intron 35.0%
AAACACAAACGCAAACTAGA+CGG - chr3_4:8479239-8479258 Msa0488560:intron 35.0%
CATGTGACTCAGCTTAAAAA+GGG + chr3_4:8479590-8479609 None:intergenic 35.0%
!! CTTTTTAAGCTGAGTCACAT+GGG - chr3_4:8479589-8479608 Msa0488560:intron 35.0%
CAAAAAAAAACTCGCAGGTA+TGG + chr3_4:8479668-8479687 None:intergenic 35.0%
AGAAAGCCAAAATATTGCCA+TGG + chr3_4:8479721-8479740 None:intergenic 35.0%
!!! AATATTTTGGCTTTCTGCCA+TGG - chr3_4:8479725-8479744 Msa0488560:five_prime_UTR 35.0%
!! AGAGTCAGTGTAATGGATTA+AGG + chr3_4:8479759-8479778 None:intergenic 35.0%
! TCATATTTAGAGGTTGGTCA+TGG + chr3_4:8479938-8479957 None:intergenic 35.0%
GACTATAGTGAGTCTGATTT+CGG - chr3_4:8480471-8480490 Msa0488560:intron 35.0%
! ATTTGTTTCTTGTTGGACTG+TGG - chr3_4:8480537-8480556 Msa0488560:intron 35.0%
!!! TGTGCTTCATTTTAACTTCG+TGG - chr3_4:8480602-8480621 Msa0488560:intron 35.0%
TACACAAATGTGGTGAATGA+TGG - chr3_4:8480775-8480794 Msa0488560:intron 35.0%
GAGAAGTTGGGAAAAATATC+CGG - chr3_4:8480951-8480970 Msa0488560:intron 35.0%
ATCTAAAAGCTTAGAATCGC+CGG + chr3_4:8480973-8480992 None:intergenic 35.0%
AAGAAAACGAGCAGAATTAC+TGG - chr3_4:8481016-8481035 Msa0488560:intron 35.0%
AAGAATGTAAGAGAAGGACA+TGG - chr3_4:8481077-8481096 Msa0488560:intron 35.0%
! TGGTGTTGAAGGATTTCTTT+AGG - chr3_4:8481097-8481116 Msa0488560:intron 35.0%
CTGCATGTTTCCAAATTAAC+TGG - chr3_4:8481215-8481234 Msa0488560:intron 35.0%
AGAGTAACAGATTTCAAGAG+TGG + chr3_4:8481271-8481290 None:intergenic 35.0%
ACGAAGAACGAAACGAAGAA+GGG + chr3_4:8473531-8473550 None:intergenic 40.0%
AACGAAGAACGAAACGAAGA+AGG + chr3_4:8473532-8473551 None:intergenic 40.0%
! ATTTGATCTAGGGTCTGTGT+TGG + chr3_4:8474273-8474292 None:intergenic 40.0%
TCATTAAGTCCCGCTCTATT+TGG + chr3_4:8474309-8474328 None:intergenic 40.0%
TACACTCTCTACGTTGTAGT+TGG + chr3_4:8474745-8474764 None:intergenic 40.0%
! AACTACAACGTAGAGAGTGT+AGG - chr3_4:8474744-8474763 Msa0488560:intron 40.0%
! ACTACAACGTAGAGAGTGTA+GGG - chr3_4:8474745-8474764 Msa0488560:intron 40.0%
CTAGGTATAAGAATGAGCAG+GGG - chr3_4:8474786-8474805 Msa0488560:intron 40.0%
ACTTCTTCCGTACACACATT+CGG - chr3_4:8474862-8474881 Msa0488560:intron 40.0%
!! ACAGTACCAACTTGTTGACT+TGG - chr3_4:8474996-8475015 Msa0488560:intron 40.0%
!! CAGTACCAACTTGTTGACTT+GGG - chr3_4:8474997-8475016 Msa0488560:intron 40.0%
AGAAACCCAAGTCAACAAGT+TGG + chr3_4:8475005-8475024 None:intergenic 40.0%
TGAGTTATTTGGATGTGCAC+CGG - chr3_4:8475546-8475565 Msa0488560:intron 40.0%
GCTTCCTATGCATGACTAAA+TGG - chr3_4:8475620-8475639 Msa0488560:intron 40.0%
CGGCGTATCCAGAAAAAAAT+AGG - chr3_4:8475882-8475901 Msa0488560:intron 40.0%
CGCTTGACCTTGTCAATATT+CGG - chr3_4:8475961-8475980 Msa0488560:intron 40.0%
! ATTGGTAATCAAAGCCGACA+AGG - chr3_4:8476112-8476131 Msa0488560:intron 40.0%
TAATCAAAGCCGACAAGGAT+AGG - chr3_4:8476117-8476136 Msa0488560:intron 40.0%
TCTTACTTGTGAAAGGGGAA+AGG + chr3_4:8476327-8476346 None:intergenic 40.0%
!! GATGTAGAAAGAGTGTTCAC+GGG + chr3_4:8476401-8476420 None:intergenic 40.0%
!! GGATGTAGAAAGAGTGTTCA+CGG + chr3_4:8476402-8476421 None:intergenic 40.0%
! GAATAGTGGGAGAAAATGGA+AGG + chr3_4:8476423-8476442 None:intergenic 40.0%
! GCTTTGGATTGAAGCATGAA+AGG + chr3_4:8476451-8476470 None:intergenic 40.0%
GGAAATTTGTGGGTATGCTT+TGG + chr3_4:8476467-8476486 None:intergenic 40.0%
TTTCCGGGTTCTTTCAATCA+TGG - chr3_4:8476529-8476548 Msa0488560:intron 40.0%
AAGCCATGATTGAAAGAACC+CGG + chr3_4:8476535-8476554 None:intergenic 40.0%
!! ATCATGGCTTGGTATAGAAG+AGG - chr3_4:8476545-8476564 Msa0488560:intron 40.0%
! AGAGGAAAGCTTGTTCTTGA+TGG - chr3_4:8476563-8476582 Msa0488560:intron 40.0%
AGATGAAACCCTAGAAGTCA+AGG + chr3_4:8476597-8476616 None:intergenic 40.0%
GATTGCAACGTTCTGTTACT+AGG + chr3_4:8476638-8476657 None:intergenic 40.0%
AGTAACAGAACGTTGCAATC+TGG - chr3_4:8476638-8476657 Msa0488560:intron 40.0%
GTAACAGAACGTTGCAATCT+GGG - chr3_4:8476639-8476658 Msa0488560:intron 40.0%
GCAATCTGGGTATTTGAATC+TGG - chr3_4:8476652-8476671 Msa0488560:intron 40.0%
ATGTGGATCCTCAAAATGTG+CGG - chr3_4:8477071-8477090 Msa0488560:intron 40.0%
! ATTGGTATAGTGGTTGGTTC+TGG - chr3_4:8477148-8477167 Msa0488560:intron 40.0%
AGAGATGGAGAAGAAGATTG+GGG - chr3_4:8477249-8477268 Msa0488560:CDS 40.0%
GAGAGAGTTTGAGAAGATGA+AGG - chr3_4:8477273-8477292 Msa0488560:CDS 40.0%
! GAAGATGAAGGCAGGTTTTA+AGG - chr3_4:8477285-8477304 Msa0488560:CDS 40.0%
!!! AGATGAAGGCAGGTTTTAAG+GGG - chr3_4:8477287-8477306 Msa0488560:CDS 40.0%
TCCTCACTCTTACACTTTCA+GGG + chr3_4:8477333-8477352 None:intergenic 40.0%
ATCCTCACTCTTACACTTTC+AGG + chr3_4:8477334-8477353 None:intergenic 40.0%
TTTGAAGAGAGGGTTGAGTA+AGG - chr3_4:8477378-8477397 Msa0488560:CDS 40.0%
! CTGTGTTTGGTGAAGAAAAG+GGG - chr3_4:8477440-8477459 Msa0488560:CDS 40.0%
AAAGTGGAGGGAAAGTTGAA+GGG - chr3_4:8477488-8477507 Msa0488560:CDS 40.0%
AAGTTGAAGGGAATTGGCAT+CGG - chr3_4:8477500-8477519 Msa0488560:CDS 40.0%
GGTTCAGAAGAGTAGGAAAA+AGG - chr3_4:8477549-8477568 Msa0488560:CDS 40.0%
GCAACCTAATACGTCACATT+TGG - chr3_4:8477588-8477607 Msa0488560:CDS 40.0%
CCATCCAAATGTGACGTATT+AGG + chr3_4:8477595-8477614 None:intergenic 40.0%
CCTAATACGTCACATTTGGA+TGG - chr3_4:8477592-8477611 Msa0488560:CDS 40.0%
!! TTTGGTGGTGAATGATCCTA+TGG - chr3_4:8477630-8477649 Msa0488560:CDS 40.0%
! GTTAATGCCTTTTGCTTACC+TGG - chr3_4:8477652-8477671 Msa0488560:CDS 40.0%
GGGAAGATAGTTGTGTTTAC+GGG - chr3_4:8477676-8477695 Msa0488560:CDS 40.0%
AAGTCTAACACTTTGCTGCT+TGG - chr3_4:8478069-8478088 Msa0488560:CDS 40.0%
! CACTTTGCTGCTTGGTAATT+AGG - chr3_4:8478077-8478096 Msa0488560:CDS 40.0%
! TTGCTGCTTGGTAATTAGGT+TGG - chr3_4:8478081-8478100 Msa0488560:CDS 40.0%
!! TAATTAGGTTGGACATGCTG+TGG - chr3_4:8478092-8478111 Msa0488560:CDS 40.0%
AGGGGATGACAAAGAATATG+TGG - chr3_4:8478130-8478149 Msa0488560:CDS 40.0%
GGGGATGACAAAGAATATGT+GGG - chr3_4:8478131-8478150 Msa0488560:CDS 40.0%
TGGTTATAAAGAGACAACGG+AGG + chr3_4:8478260-8478279 None:intergenic 40.0%
! GTTTGATTTCGTCTTATGGC+AGG + chr3_4:8478561-8478580 None:intergenic 40.0%
!! ACTTGTTTTCTGCACATCCT+CGG - chr3_4:8478698-8478717 Msa0488560:five_prime_UTR 40.0%
AGTCATACCAAGTCCATACA+AGG + chr3_4:8478727-8478746 None:intergenic 40.0%
ATCTATATCACCGTACAACC+CGG - chr3_4:8478921-8478940 Msa0488560:five_prime_UTR 40.0%
CAGATATAAGAGCAGATAGC+TGG - chr3_4:8479285-8479304 Msa0488560:intron 40.0%
! TGGGATCGTAACACAGATTT+TGG - chr3_4:8479396-8479415 Msa0488560:intron 40.0%
AGCAAGGAGGTCATAAAGAT+CGG + chr3_4:8479519-8479538 None:intergenic 40.0%
CCATGTGACTCAGCTTAAAA+AGG + chr3_4:8479591-8479610 None:intergenic 40.0%
!! CCTTTTTAAGCTGAGTCACA+TGG - chr3_4:8479588-8479607 Msa0488560:intron 40.0%
ATATTGCCATGGCCGATATT+TGG + chr3_4:8479710-8479729 None:intergenic 40.0%
! TATCGGCCATGGCAATATTT+TGG - chr3_4:8479712-8479731 Msa0488560:five_prime_UTR 40.0%
GGATTAAGGATGACAAACCA+TGG + chr3_4:8479745-8479764 None:intergenic 40.0%
TGCTTGTAGAGTCAGTGTAA+TGG + chr3_4:8479766-8479785 None:intergenic 40.0%
! GAAGCATTCATTAGCCCAAA+TGG - chr3_4:8479995-8480014 Msa0488560:intron 40.0%
! CATGCTTGGTTATGCCATTT+GGG + chr3_4:8480012-8480031 None:intergenic 40.0%
ACATGCTTGGTTATGCCATT+TGG + chr3_4:8480013-8480032 None:intergenic 40.0%
GTAAAGCAGTGCAACTCAAA+GGG + chr3_4:8480075-8480094 None:intergenic 40.0%
ATGATGCCTTCTACTAAGCA+TGG + chr3_4:8480177-8480196 None:intergenic 40.0%
TGCTTAAAAGTAGCCATGTC+AGG + chr3_4:8480680-8480699 None:intergenic 40.0%
ACCTAAAGTCTACGAGAAGT+TGG - chr3_4:8480938-8480957 Msa0488560:intron 40.0%
CCTAAAGTCTACGAGAAGTT+GGG - chr3_4:8480939-8480958 Msa0488560:intron 40.0%
! TATTTTGCCACTCATCCATC+TGG - chr3_4:8480993-8481012 Msa0488560:intron 40.0%
! TTTTCTTCCAGATGGATGAG+TGG + chr3_4:8481003-8481022 None:intergenic 40.0%
ACATTCCTCCTACATTGTGT+TGG - chr3_4:8481188-8481207 Msa0488560:intron 40.0%
CATTCCTCCTACATTGTGTT+GGG - chr3_4:8481189-8481208 Msa0488560:intron 40.0%
GGCAACAGATCCAGTTAATT+TGG + chr3_4:8481228-8481247 None:intergenic 40.0%
ATCAAGTGCAGAAGAAGCAA+TGG - chr3_4:8481301-8481320 Msa0488560:intron 40.0%
! TGCAGAAGAAGCAATGGATT+AGG - chr3_4:8481307-8481326 Msa0488560:intron 40.0%
!! AGAAGAAGCAATGGATTAGG+TGG - chr3_4:8481310-8481329 Msa0488560:intron 40.0%
CTGCAAGTGAATACATTGCA+TGG - chr3_4:8481337-8481356 Msa0488560:intron 40.0%
GCTGAAGCTGACAGATAATT+TGG - chr3_4:8481364-8481383 Msa0488560:five_prime_UTR 40.0%
ATTACTATGCACTGAGTCAC+TGG - chr3_4:8481410-8481429 Msa0488560:five_prime_UTR 40.0%
!! ATAGCTTGTTGGGTTTGGCT+TGG + chr3_4:8474040-8474059 None:intergenic 45.0%
TAGGATCCCACCAAATAGAG+CGG - chr3_4:8474296-8474315 Msa0488560:intron 45.0%
TAAGTCCCGCTCTATTTGGT+GGG + chr3_4:8474305-8474324 None:intergenic 45.0%
TTAAGTCCCGCTCTATTTGG+TGG + chr3_4:8474306-8474325 None:intergenic 45.0%
! AGCGGGACTTAATGACTTGT+TGG - chr3_4:8474314-8474333 Msa0488560:intron 45.0%
! CTACAACGTAGAGAGTGTAG+GGG - chr3_4:8474746-8474765 Msa0488560:intron 45.0%
AAGATTCCAGATTCAGAGGG+AGG - chr3_4:8474813-8474832 Msa0488560:intron 45.0%
AAGTGTGTGGAATGTGTGTG+AGG + chr3_4:8474846-8474865 None:intergenic 45.0%
! TGGTGATGTGAGAGATTGAG+CGG + chr3_4:8475088-8475107 None:intergenic 45.0%
!! CATCAAAAGGTGATGGACAG+TGG + chr3_4:8475108-8475127 None:intergenic 45.0%
GATCTGGCATCAAAAGGTGA+TGG + chr3_4:8475115-8475134 None:intergenic 45.0%
! TCACCTTTTGATGCCAGATC+CGG - chr3_4:8475115-8475134 Msa0488560:intron 45.0%
GAAGGAACCCATAAGAGAGA+AGG + chr3_4:8475312-8475331 None:intergenic 45.0%
GGGTTCTTTCAATCATGGCT+TGG - chr3_4:8476534-8476553 Msa0488560:intron 45.0%
! TGCGGCATTTTAAGCCAAGA+GGG - chr3_4:8477089-8477108 Msa0488560:intron 45.0%
AACCAATTCTTTGGCCCTCT+TGG + chr3_4:8477106-8477125 None:intergenic 45.0%
GAGTTTGAGAAGATGAAGGC+AGG - chr3_4:8477277-8477296 Msa0488560:CDS 45.0%
! ACCCTGAAAGTGTAAGAGTG+AGG - chr3_4:8477329-8477348 Msa0488560:CDS 45.0%
GGTTGAGTAAGGAGAATGTG+TGG - chr3_4:8477389-8477408 Msa0488560:CDS 45.0%
! GTTTGGTGAAGAAAAGGGGA+AGG - chr3_4:8477444-8477463 Msa0488560:CDS 45.0%
!! AGTGCATTGACTGAAAGTGG+AGG - chr3_4:8477475-8477494 Msa0488560:CDS 45.0%
!! GTGCATTGACTGAAAGTGGA+GGG - chr3_4:8477476-8477495 Msa0488560:CDS 45.0%
GAAAGTGGAGGGAAAGTTGA+AGG - chr3_4:8477487-8477506 Msa0488560:CDS 45.0%
GAGGGAAAGTTGAAGGGAAT+TGG - chr3_4:8477494-8477513 Msa0488560:CDS 45.0%
AGTTGAAGGGAATTGGCATC+GGG - chr3_4:8477501-8477520 Msa0488560:CDS 45.0%
GAAGAGTAGGAAAAAGGGTC+AGG - chr3_4:8477555-8477574 Msa0488560:CDS 45.0%
! AATGCCTTTTGCTTACCTGG+TGG - chr3_4:8477655-8477674 Msa0488560:CDS 45.0%
! ATGCCTTTTGCTTACCTGGT+GGG - chr3_4:8477656-8477675 Msa0488560:CDS 45.0%
AACACAACTATCTTCCCACC+AGG + chr3_4:8477673-8477692 None:intergenic 45.0%
ACGGAGGAATGATTACCTTC+TGG + chr3_4:8478244-8478263 None:intergenic 45.0%
! CTCTCGAGTCAACTCGTTTT+GGG + chr3_4:8478675-8478694 None:intergenic 45.0%
AGGGAGATCATAAAGGTTGG+TGG + chr3_4:8479487-8479506 None:intergenic 45.0%
AGCAGGGAGATCATAAAGGT+TGG + chr3_4:8479490-8479509 None:intergenic 45.0%
AGGAGGTCATAAAGATCGGT+GGG + chr3_4:8479515-8479534 None:intergenic 45.0%
AAGGAGGTCATAAAGATCGG+TGG + chr3_4:8479516-8479535 None:intergenic 45.0%
AGAAACAACTTCGGCTAGCA+AGG + chr3_4:8479535-8479554 None:intergenic 45.0%
GGTAAAGCAGTGCAACTCAA+AGG + chr3_4:8480076-8480095 None:intergenic 45.0%
! TTGAGTTGCACTGCTTTACC+TGG - chr3_4:8480076-8480095 Msa0488560:intron 45.0%
TACTGCAGAATTTACGCACC+AGG + chr3_4:8480097-8480116 None:intergenic 45.0%
GGAGTTATTAGGCCTACTCT+AGG - chr3_4:8480363-8480382 Msa0488560:intron 45.0%
!! TGGACTGTGGATTAGTCCTA+TGG - chr3_4:8480550-8480569 Msa0488560:intron 45.0%
CTAACCAACATGTCCTGACA+TGG - chr3_4:8480664-8480683 Msa0488560:intron 45.0%
CTTCTATTAGTTGCATCCGC+TGG - chr3_4:8480897-8480916 Msa0488560:intron 45.0%
CCCAACTTCTCGTAGACTTT+AGG + chr3_4:8480942-8480961 None:intergenic 45.0%
! TCTGCTCGTTTTCTTCCAGA+TGG + chr3_4:8481011-8481030 None:intergenic 45.0%
!! AGAATTACTGGCTCAAGCTG+AGG - chr3_4:8481028-8481047 Msa0488560:intron 45.0%
! AGAGAAGGACATGGTGTTGA+AGG - chr3_4:8481086-8481105 Msa0488560:intron 45.0%
GTTGCCTGAGATTCAGAGTA+TGG - chr3_4:8481242-8481261 Msa0488560:intron 45.0%
GCTACCATACTCTGAATCTC+AGG + chr3_4:8481249-8481268 None:intergenic 45.0%
AGGATCCCACCAAATAGAGC+GGG - chr3_4:8474297-8474316 Msa0488560:intron 50.0%
! GTAGAGAGTGTAGGGGAAGA+AGG - chr3_4:8474753-8474772 Msa0488560:intron 50.0%
ATTCCAGATTCAGAGGGAGG+AGG - chr3_4:8474816-8474835 Msa0488560:intron 50.0%
AAACCTCCTCCCTCTGAATC+TGG + chr3_4:8474822-8474841 None:intergenic 50.0%
! GTGTGTACGGAAGAAGTGTG+TGG + chr3_4:8474859-8474878 None:intergenic 50.0%
CAATACACACAAGGGCAGTG+AGG + chr3_4:8474926-8474945 None:intergenic 50.0%
TTGCCGGATCTGGCATCAAA+AGG + chr3_4:8475121-8475140 None:intergenic 50.0%
AAATCTCGTCGCGTAGTTGC+CGG + chr3_4:8475137-8475156 None:intergenic 50.0%
GTCTTACCACAGAGGAGTAG+AGG + chr3_4:8475240-8475259 None:intergenic 50.0%
! CACAGATGGTCTTACCACAG+AGG + chr3_4:8475248-8475267 None:intergenic 50.0%
CGAATAGAGGGAGTCACAGA+TGG + chr3_4:8475262-8475281 None:intergenic 50.0%
GGCGCCATTTAGTCATGCAT+AGG + chr3_4:8475627-8475646 None:intergenic 50.0%
!!! TTTTTTCTGGATACGCCGCC+TGG + chr3_4:8475880-8475899 None:intergenic 50.0%
GGGTGTGTGATTCGTGAAGA+AGG + chr3_4:8476364-8476383 None:intergenic 50.0%
! GTGCGGCATTTTAAGCCAAG+AGG - chr3_4:8477088-8477107 Msa0488560:intron 50.0%
AGCCAAGAGGGCCAAAGAAT+TGG - chr3_4:8477101-8477120 Msa0488560:intron 50.0%
ACACTTTCAGGGTGCATTGC+AGG + chr3_4:8477322-8477341 None:intergenic 50.0%
CTTCCCACCAGGTAAGCAAA+AGG + chr3_4:8477662-8477681 None:intergenic 50.0%
!! CAGTCTCAGAAGTGCTTAGC+AGG + chr3_4:8477819-8477838 None:intergenic 50.0%
TACGGCTTCCTTTCTCCAGA+AGG - chr3_4:8478226-8478245 Msa0488560:CDS 50.0%
!!! AACTCGTTTTGGGAGGTCAG+AGG + chr3_4:8478665-8478684 None:intergenic 50.0%
!! TCGAGTCAACTCGTTTTGGG+AGG + chr3_4:8478672-8478691 None:intergenic 50.0%
! GCTCTCGAGTCAACTCGTTT+TGG + chr3_4:8478676-8478695 None:intergenic 50.0%
ACATCCTCGGATGCCTTGTA+TGG - chr3_4:8478711-8478730 Msa0488560:five_prime_UTR 50.0%
! AAGTCCATACAAGGCATCCG+AGG + chr3_4:8478718-8478737 None:intergenic 50.0%
TCGGATGCCTTGTATGGACT+TGG - chr3_4:8478717-8478736 Msa0488560:five_prime_UTR 50.0%
! AGGGATAGACATCTAGAGCG+TGG + chr3_4:8478824-8478843 None:intergenic 50.0%
! CGCTCTAGATGTCTATCCCT+TGG - chr3_4:8478824-8478843 Msa0488560:five_prime_UTR 50.0%
TCTATCCCTTGGCGTGAGAA+TGG - chr3_4:8478835-8478854 Msa0488560:five_prime_UTR 50.0%
CTATCCCTTGGCGTGAGAAT+GGG - chr3_4:8478836-8478855 Msa0488560:five_prime_UTR 50.0%
TATCCCTTGGCGTGAGAATG+GGG - chr3_4:8478837-8478856 Msa0488560:five_prime_UTR 50.0%
GTGCTAATAGTCCCCACGTT+GGG - chr3_4:8478859-8478878 Msa0488560:five_prime_UTR 50.0%
TCCCCACGTTGGGTGAAATA+TGG - chr3_4:8478869-8478888 Msa0488560:five_prime_UTR 50.0%
GCCATATTTCACCCAACGTG+GGG + chr3_4:8478873-8478892 None:intergenic 50.0%
GGCCATATTTCACCCAACGT+GGG + chr3_4:8478874-8478893 None:intergenic 50.0%
AGGCCATATTTCACCCAACG+TGG + chr3_4:8478875-8478894 None:intergenic 50.0%
CCGTACAAAACCGGGTTGTA+CGG + chr3_4:8478934-8478953 None:intergenic 50.0%
!! CCGTACAACCCGGTTTTGTA+CGG - chr3_4:8478931-8478950 Msa0488560:five_prime_UTR 50.0%
TAGCTCAGCCGTACAAAACC+GGG + chr3_4:8478942-8478961 None:intergenic 50.0%
CTAGCTCAGCCGTACAAAAC+CGG + chr3_4:8478943-8478962 None:intergenic 50.0%
GGCTAGCAGGGAGATCATAA+AGG + chr3_4:8479494-8479513 None:intergenic 50.0%
!! TAAAGATCGGTGGGCTAGCA+GGG + chr3_4:8479506-8479525 None:intergenic 50.0%
!! ATAAAGATCGGTGGGCTAGC+AGG + chr3_4:8479507-8479526 None:intergenic 50.0%
AACAACTTCGGCTAGCAAGG+AGG + chr3_4:8479532-8479551 None:intergenic 50.0%
CAGCCTCGACAGTAAAGTCA+CGG - chr3_4:8479562-8479581 Msa0488560:intron 50.0%
GTGTTGCCAAATATCGGCCA+TGG - chr3_4:8479701-8479720 Msa0488560:five_prime_UTR 50.0%
!! GAGAGGGCATTACACATGCT+TGG + chr3_4:8480026-8480045 None:intergenic 50.0%
GTAGCCATGTCAGGACATGT+TGG + chr3_4:8480671-8480690 None:intergenic 50.0%
! TAGACTTTAGGTGCCACACG+TGG + chr3_4:8480930-8480949 None:intergenic 50.0%
GTCTCCCAACACAATGTAGG+AGG + chr3_4:8481196-8481215 None:intergenic 50.0%
GCAGTCTCCCAACACAATGT+AGG + chr3_4:8481199-8481218 None:intergenic 50.0%
TTCCCTTGCCCCTGCTATAG+CGG - chr3_4:8474604-8474623 Msa0488560:intron 55.0%
TACACCCTCCCGCTATAGCA+GGG + chr3_4:8474616-8474635 None:intergenic 55.0%
TTACACCCTCCCGCTATAGC+AGG + chr3_4:8474617-8474636 None:intergenic 55.0%
CCACAGAGGAGTAGAGGAGA+AGG + chr3_4:8475234-8475253 None:intergenic 55.0%
CCTTCTCCTCTACTCCTCTG+TGG - chr3_4:8475231-8475250 Msa0488560:intron 55.0%
CATTGGGCACGACATGAACG+AGG + chr3_4:8475648-8475667 None:intergenic 55.0%
AGGAAAAAGGGTCAGGAGCG+AGG - chr3_4:8477562-8477581 Msa0488560:CDS 55.0%
GGAAAAAGGGTCAGGAGCGA+GGG - chr3_4:8477563-8477582 Msa0488560:CDS 55.0%
! GGAGGTCAGAGGTGTAAACG+CGG + chr3_4:8478654-8478673 None:intergenic 55.0%
GGTGCTAATAGTCCCCACGT+TGG - chr3_4:8478858-8478877 Msa0488560:five_prime_UTR 55.0%
!! CGGTTTTGTACGGCTGAGCT+AGG - chr3_4:8478941-8478960 Msa0488560:five_prime_UTR 55.0%
GCACCGTGACTTTACTGTCG+AGG + chr3_4:8479568-8479587 None:intergenic 55.0%
CACACGTGGATCATAGCCAG+CGG + chr3_4:8480916-8480935 None:intergenic 55.0%
! ACTGGCTCAAGCTGAGGTGA+TGG - chr3_4:8481034-8481053 Msa0488560:intron 55.0%
TCCCTTGCCCCTGCTATAGC+GGG - chr3_4:8474605-8474624 Msa0488560:intron 60.0%
TCCCGCTATAGCAGGGGCAA+GGG + chr3_4:8474609-8474628 None:intergenic 60.0%
! TTGCCCCTGCTATAGCGGGA+GGG - chr3_4:8474609-8474628 Msa0488560:intron 60.0%
ACACCCTCCCGCTATAGCAG+GGG + chr3_4:8474615-8474634 None:intergenic 60.0%
CACACAAGGGCAGTGAGGAG+AGG + chr3_4:8474921-8474940 None:intergenic 60.0%
TGTGGCCAGACACAGTGCTG+AGG - chr3_4:8478110-8478129 Msa0488560:CDS 60.0%
! GTGGCCAGACACAGTGCTGA+GGG - chr3_4:8478111-8478130 Msa0488560:CDS 60.0%
! TGGCCAGACACAGTGCTGAG+GGG - chr3_4:8478112-8478131 Msa0488560:CDS 60.0%
CATCCCCTCAGCACTGTGTC+TGG + chr3_4:8478118-8478137 None:intergenic 60.0%
GCACCCCATTCTCACGCCAA+GGG + chr3_4:8478843-8478862 None:intergenic 60.0%
AGCACCCCATTCTCACGCCA+AGG + chr3_4:8478844-8478863 None:intergenic 60.0%
! CGCTGGCTATGATCCACGTG+TGG - chr3_4:8480914-8480933 Msa0488560:intron 60.0%
CTCCCGCTATAGCAGGGGCA+AGG + chr3_4:8474610-8474629 None:intergenic 65.0%
! CTTGCCCCTGCTATAGCGGG+AGG - chr3_4:8474608-8474627 Msa0488560:intron 65.0%
CGTCGCGTAGTTGCCGGATC+TGG + chr3_4:8475131-8475150 None:intergenic 65.0%
CACGGGTGACGCACACACGT+GGG + chr3_4:8476384-8476403 None:intergenic 65.0%
TCACGGGTGACGCACACACG+TGG + chr3_4:8476385-8476404 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 8473436 8481495 8473436 ID=Msa0488560;Name=Msa0488560
chr3_4 mRNA 8473436 8481495 8473436 ID=Msa0488560-mRNA-1;Parent=Msa0488560;Name=Msa0488560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=1019|1|1|1|0.75|0.4|5|377|534
chr3_4 exon 8473436 8474062 8473436 ID=Msa0488560-mRNA-1:exon:2782;Parent=Msa0488560-mRNA-1
chr3_4 exon 8476684 8476832 8476684 ID=Msa0488560-mRNA-1:exon:2781;Parent=Msa0488560-mRNA-1
chr3_4 exon 8477178 8479050 8477178 ID=Msa0488560-mRNA-1:exon:2780;Parent=Msa0488560-mRNA-1
chr3_4 exon 8479679 8479888 8479679 ID=Msa0488560-mRNA-1:exon:2779;Parent=Msa0488560-mRNA-1
chr3_4 exon 8481354 8481495 8481354 ID=Msa0488560-mRNA-1:exon:2778;Parent=Msa0488560-mRNA-1
chr3_4 five_prime_UTR 8481354 8481495 8481354 ID=Msa0488560-mRNA-1:five_prime_utr;Parent=Msa0488560-mRNA-1
chr3_4 five_prime_UTR 8479679 8479888 8479679 ID=Msa0488560-mRNA-1:five_prime_utr;Parent=Msa0488560-mRNA-1
chr3_4 five_prime_UTR 8478384 8479050 8478384 ID=Msa0488560-mRNA-1:five_prime_utr;Parent=Msa0488560-mRNA-1
chr3_4 CDS 8477178 8478383 8477178 ID=Msa0488560-mRNA-1:cds;Parent=Msa0488560-mRNA-1
chr3_4 CDS 8476684 8476832 8476684 ID=Msa0488560-mRNA-1:cds;Parent=Msa0488560-mRNA-1
chr3_4 CDS 8473813 8474062 8473813 ID=Msa0488560-mRNA-1:cds;Parent=Msa0488560-mRNA-1
chr3_4 three_prime_UTR 8473436 8473812 8473436 ID=Msa0488560-mRNA-1:three_prime_utr;Parent=Msa0488560-mRNA-1
Gene Sequence

>Msa0488560

ATGGCTTGGTATAGAAGAGGAAAGCTTGTTCTTGATGGTTTTCATACCTTGACTTCTAGGGTTTCATCTCAAAATCCAATTTTTCTACCTAGTAACAGAACGTTGCAATCTGGGTATTTGAATCTGGGTAACAAAAGTGCTAACTTTAATGGGTTTTCTTCGTTTTCTTCAATTTTTCAACCTAGTAACAGAATTTTGCAATCTGGGTATTTGAATTTGGGTTCCAAAGATGCTAGCTTTAATGTGTTTTCTTCATTTTCTTCAATTTCTAGGAGATTAGGAAAAATGTGTTGTGAAAATAATAAGAATATTAGGGTTGGTTCTCAAGGTTGTAACTTTAATGGGTTTTCTTCATTTACTTTGATTTCTAAGATATTAGATAAAAGGGCTTTTGAGATTAATAAGAATATTGGGTTGGGTTGTAAAGGTGTTAGCTTTAATAGGTTTTCGTCGTTTTCGAAGAATTTCAAGAGATTAGACAACAGGGGTTTTGAAGTTAATACGGATTTTAGGAGATTATACTATGTGGATCCTCAAAATGTGCGGCATTTTAAGCCAAGAGGGCCAAAGAATTGGTTTCAGAATCCTAGGCATGTTATGATTGGTATAGTGGTTGGTTCTGGTGTTTTTATAACTGTGTATTTTGGGAATATGGAAACTGTTCCTTATACGAAGAGAACACATTTGATTTTGATTCCGAAAGAGATGGAGAAGAAGATTGGGGAGAGAGAGTTTGAGAAGATGAAGGCAGGTTTTAAGGGGAAATTGTTGCCTGCAATGCACCCTGAAAGTGTAAGAGTGAGGATGATAGCGAATGATATTGTTGAAGCTTTGAAGAGAGGGTTGAGTAAGGAGAATGTGTGGAGTGATATAGATTATGCTTCAGAAAATACTGTGTTTGGTGAAGAAAAGGGGAAGGAGACAATTAGTGCATTGACTGAAAGTGGAGGGAAAGTTGAAGGGAATTGGCATCGGGAAGATGAGATTCTTGATGATAAATGGGTTCAGAAGAGTAGGAAAAAGGGTCAGGAGCGAGGGTCGCAACCTAATACGTCACATTTGGATGGATTGAATTGGGAGATTTTGGTGGTGAATGATCCTATGGTTAATGCCTTTTGCTTACCTGGTGGGAAGATAGTTGTGTTTACGGGTTTGCTCGAACATTTTAGAAGTGATGCAGAGATAGCAACTATTATTGGACATGAGGTTGGACATGCTGTGGCCAGACACAGTGCTGAGGGGATGACAAAGAATATGTGGGTTTTAATTCTAAACTTCATACTTTATCAATTCGTCACACCTGATATTGTCAACACTATGTCATCACTTCTCTTACGGCTTCCTTTCTCCAGAAGGATGGAAATTGAAGCTGATTACATTGGTCTTCTATTAGTTGCATCCGCTGGCTATGATCCACGTGTGGCACCTAAAGTCTACGAGAAGTTGGGAAAAATATCCGGCGATTCTAAGCTTTTAGATTATTTTGCCACTCATCCATCTGGAAGAAAACGAGCAGAATTACTGGCTCAAGCTGAGGTGATGGATGAAGCTCTTACTATATATAAGAATGTAAGAGAAGGACATGGTGTTGAAGGATTTCTTTAG

Protein sequence

>Msa0488560

MAWYRRGKLVLDGFHTLTSRVSSQNPIFLPSNRTLQSGYLNLGNKSANFNGFSSFSSIFQPSNRILQSGYLNLGSKDASFNVFSSFSSISRRLGKMCCENNKNIRVGSQGCNFNGFSSFTLISKILDKRAFEINKNIGLGCKGVSFNRFSSFSKNFKRLDNRGFEVNTDFRRLYYVDPQNVRHFKPRGPKNWFQNPRHVMIGIVVGSGVFITVYFGNMETVPYTKRTHLILIPKEMEKKIGEREFEKMKAGFKGKLLPAMHPESVRVRMIANDIVEALKRGLSKENVWSDIDYASENTVFGEEKGKETISALTESGGKVEGNWHREDEILDDKWVQKSRKKGQERGSQPNTSHLDGLNWEILVVNDPMVNAFCLPGGKIVVFTGLLEHFRSDAEIATIIGHEVGHAVARHSAEGMTKNMWVLILNFILYQFVTPDIVNTMSSLLLRLPFSRRMEIEADYIGLLLVASAGYDPRVAPKVYEKLGKISGDSKLLDYFATHPSGRKRAELLAQAEVMDEALTIYKNVREGHGVEGFL*