AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0126610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126610 MtrunA17_Chr1g0189681 55.000 160 21 2 145 253 177 336 1.38e-45 157
Msa0126610 MtrunA17_Chr1g0189681 50.847 118 42 5 57 162 15 128 6.43e-22 94.4
Msa0126610 MtrunA17_Chr6g0456571 35.426 223 77 4 143 298 394 616 5.64e-32 125
Msa0126610 MtrunA17_Chr6g0456571 47.619 105 44 2 65 162 244 344 7.50e-16 78.2
Msa0126610 MtrunA17_Chr4g0018941 37.089 213 66 5 145 289 359 571 1.32e-29 118
Msa0126610 MtrunA17_Chr6g0456561 35.294 221 76 4 145 298 449 669 4.35e-28 114
Msa0126610 MtrunA17_Chr6g0456561 51.402 107 36 4 66 162 297 397 5.66e-17 81.6
Msa0126610 MtrunA17_Chr6g0456541 33.032 221 81 4 145 298 460 680 1.21e-26 110
Msa0126610 MtrunA17_Chr6g0456541 45.361 97 45 3 66 154 308 404 3.90e-14 73.2
Msa0126610 MtrunA17_Chr6g0456551 33.032 221 81 4 145 298 390 610 1.96e-25 106
Msa0126610 MtrunA17_Chr6g0456551 41.818 110 44 4 66 162 236 338 6.39e-12 66.2
Msa0126610 MtrunA17_Chr7g0219071 32.710 214 77 4 143 289 441 654 2.05e-24 103
Msa0126610 MtrunA17_Chr7g0219071 39.048 105 52 2 66 162 291 391 5.59e-11 63.5
Msa0126610 MtrunA17_Chr7g0218781 33.178 214 76 4 143 289 392 605 3.57e-24 102
Msa0126610 MtrunA17_Chr7g0218781 38.144 97 52 1 66 154 242 338 4.37e-12 67.0
Msa0126610 MtrunA17_Chr6g0456581 32.579 221 82 4 145 298 390 610 5.09e-24 102
Msa0126610 MtrunA17_Chr6g0456581 41.818 110 44 4 66 162 236 338 1.30e-12 68.6
Msa0126610 MtrunA17_Chr6g0456601 30.942 223 87 4 143 298 396 618 6.26e-22 96.3
Msa0126610 MtrunA17_Chr6g0456611 30.876 217 80 4 143 289 399 615 6.56e-22 96.3
Msa0126610 MtrunA17_Chr6g0456611 51.136 88 36 2 61 141 244 331 4.46e-15 75.9
Msa0126610 MtrunA17_Chr6g0456621 32.447 188 70 3 143 273 401 588 1.25e-21 95.5
Msa0126610 MtrunA17_Chr6g0456621 44.762 105 46 2 66 162 249 349 1.20e-15 77.8
Msa0126610 MtrunA17_Chr6g0456651 28.505 214 86 3 143 289 272 485 5.25e-21 93.2
Msa0126610 MtrunA17_Chr6g0456651 44.048 84 39 1 66 141 120 203 2.11e-11 64.7
Msa0126610 MtrunA17_Chr1g0189691 36.559 93 46 3 208 288 1 92 6.47e-13 63.9
Msa0126610 MtrunA17_Chr6g0464301 65.217 46 16 0 96 141 13 58 1.66e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126610 AT5G15870.1 30.804 224 85 5 145 298 440 663 4.77e-20 91.3
Msa0126610 AT5G15870.1 42.857 98 47 3 56 144 277 374 2.70e-14 73.9
Msa0126610 AT1G18310.1 33.750 160 51 3 145 249 389 548 6.17e-17 82.0
Msa0126610 AT1G18310.1 39.706 136 49 5 56 162 206 337 8.75e-13 69.3

Find 64 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGGTTGGGACTGCTTGGTT+TGG 0.247623 1_3:+55718152 Msa0126610:CDS
GGGTTGGGACTGCTTGGTTT+GGG 0.255874 1_3:+55718153 Msa0126610:CDS
TGTAAACATTGATCCATATT+GGG 0.256708 1_3:+55717779 Msa0126610:CDS
TTGTAAACATTGATCCATAT+TGG 0.286933 1_3:+55717778 Msa0126610:CDS
CACTCGAGATATTTCCTTGA+TGG 0.293905 1_3:+55717744 Msa0126610:CDS
TCTTCATTTCTCTCCGCTTC+AGG 0.294757 1_3:+55716664 Msa0126610:CDS
GGTGAAACCTTCAAATCCTT+TGG 0.316954 1_3:+55716593 Msa0126610:CDS
CGCTTGATAGGTTTAGAATA+TGG 0.329607 1_3:+55717901 Msa0126610:CDS
TTATACTTCTTACCCCAATA+TGG 0.333060 1_3:-55717792 None:intergenic
AATACTTTCCAAAGCTGTTA+AGG 0.338125 1_3:-55717953 None:intergenic
AAACCAGGGTTTGCTTATCT+TGG 0.353049 1_3:+55718033 Msa0126610:CDS
AGTGAACTTGTTGGTGTTGT+TGG 0.356391 1_3:+55717334 Msa0126610:CDS
CACTCACCCAAAGGATTTGA+AGG 0.360881 1_3:-55716600 Msa0126600:intron
TGGAGCAACCTTAACAGCTT+TGG 0.376313 1_3:+55717945 Msa0126610:CDS
GGGACTGCTTGGTTTGGGGA+AGG 0.383767 1_3:+55718158 Msa0126610:CDS
CAGAGTTCTACTTTGTTAAG+TGG 0.395921 1_3:-55716768 None:intergenic
TACTATTCTGCTCGCTTGAT+AGG 0.398426 1_3:+55717889 Msa0126610:CDS
AGGAAATATCTCGAGTGATA+TGG 0.399023 1_3:-55717738 None:intergenic
ATTATATTATGAAATTGTTT+CGG 0.401614 1_3:+55717426 Msa0126610:CDS
TTGTGATAAGGAAGGTGCTT+TGG 0.403486 1_3:+55718214 Msa0126610:CDS
GTGAAACCTTCAAATCCTTT+GGG 0.426258 1_3:+55716594 Msa0126610:CDS
GTGAAGGAACTTGTCGGGTT+GGG 0.438392 1_3:+55718138 Msa0126610:CDS
CTTGTCGGGTTGGGACTGCT+TGG 0.449692 1_3:+55718147 Msa0126610:CDS
GTAACTTGGCACTCTATGAA+TGG 0.450505 1_3:+55717391 Msa0126610:CDS
GAGTAGACCTTGGAGAAGAA+AGG 0.453767 1_3:+55717192 Msa0126610:intron
CTTCAAATCCTTTGGGTGAG+TGG 0.466154 1_3:+55716601 Msa0126610:CDS
TTGGTGTTGTTGGTGATCCA+TGG 0.469297 1_3:+55717344 Msa0126610:CDS
TCTGACTCTAGTTATGACTT+TGG 0.479169 1_3:+55717693 Msa0126610:CDS
TTTGTAGAGAATTTGTGATA+AGG 0.486578 1_3:+55718202 Msa0126610:CDS
AGAAGGAATGAATATGTATG+AGG 0.491603 1_3:+55718002 Msa0126610:CDS
GAAGATGACGAGAGGAATCA+AGG 0.500975 1_3:-55716643 Msa0126600:CDS
AGTAGACCTTGGAGAAGAAA+GGG 0.502514 1_3:+55717193 Msa0126610:intron
AAATCCTTTGGGTGAGTGGT+TGG 0.505191 1_3:+55716605 Msa0126610:CDS
TAGAGAATTTGTGATAAGGA+AGG 0.511186 1_3:+55718206 Msa0126610:CDS
ACCTTGGAGAAGAAAGGGTT+CGG 0.515015 1_3:+55717198 Msa0126610:CDS
GACGCCAATGTTGTTACTGT+TGG 0.529324 1_3:+55717925 Msa0126610:CDS
GTATGCATTAACAACTTCAC+GGG 0.538574 1_3:-55717869 None:intergenic
ACCGAACCCTTTCTTCTCCA+AGG 0.541202 1_3:-55717199 None:intergenic
TGTGAAGGAACTTGTCGGGT+TGG 0.546197 1_3:+55718137 Msa0126610:CDS
AGTAAGAGACGGGTAGGCGA+AGG 0.549891 1_3:-55716693 None:intergenic
TTTATATGATCAGGAATATG+GGG 0.551445 1_3:+55717645 Msa0126610:intron
AATATGTGAAGGAACTTGTC+GGG 0.559686 1_3:+55718133 Msa0126610:CDS
GGTTGGGACTGCTTGGTTTG+GGG 0.562711 1_3:+55718154 Msa0126610:CDS
AGTCCCTCAACATCGTTCAA+AGG 0.572709 1_3:-55717451 None:intergenic
GTAAACATTGATCCATATTG+GGG 0.577879 1_3:+55717780 Msa0126610:CDS
GAATATGTGAAGGAACTTGT+CGG 0.578775 1_3:+55718132 Msa0126610:CDS
AGCATTGATAGTGAACTTGT+TGG 0.579501 1_3:+55717325 Msa0126610:intron
CAAGAACAGCAATACCATCA+AGG 0.580016 1_3:-55717758 None:intergenic
GCGAAGGAGTTAACCTGAAG+CGG 0.584261 1_3:-55716677 None:intergenic
ATGATTGAATGAGTAAGAGA+CGG 0.586872 1_3:-55716704 None:intergenic
TGATTGAATGAGTAAGAGAC+GGG 0.590176 1_3:-55716703 None:intergenic
AGTATGCATTAACAACTTCA+CGG 0.591004 1_3:-55717870 None:intergenic
ATGTGGTGGCATGTAAGAGA+AGG 0.604058 1_3:+55717985 Msa0126610:CDS
TGAATGAGTAAGAGACGGGT+AGG 0.605038 1_3:-55716699 None:intergenic
TTCTGATGTTGAATATGTGA+AGG 0.614385 1_3:+55718122 Msa0126610:CDS
TTGGTGCTAGAGACAATGTA+TGG 0.617818 1_3:+55718052 Msa0126610:CDS
GGAGGAGTTGTTACAAAACA+AGG 0.618888 1_3:+55717666 Msa0126610:CDS
AACACCAACCACTCACCCAA+AGG 0.626193 1_3:-55716609 Msa0126600:CDS
GAAATGAAGAAGATGACGAG+AGG 0.627048 1_3:-55716651 Msa0126600:CDS
ATATGATCAGGAATATGGGG+AGG 0.640187 1_3:+55717648 Msa0126610:intron
TGCTCCAACAGTAACAACAT+TGG 0.651685 1_3:-55717929 None:intergenic
AAAGTATTAGAGCTCAAATG+TGG 0.658452 1_3:+55717968 Msa0126610:CDS
GTATTAGAGCTCAAATGTGG+TGG 0.662975 1_3:+55717971 Msa0126610:CDS
GCACCAAGATAAGCAAACCC+TGG 0.666993 1_3:-55718036 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATTATGAAATTGTTT+CGG + chr1_3:55717426-55717445 Msa0126610:CDS 10.0%
!! ATTATATTATGAAATTGTTT+CGG + chr1_3:55717426-55717445 Msa0126610:CDS 10.0%
!!! AAATGGATTTTTATATGATC+AGG + chr1_3:55717636-55717655 Msa0126610:intron 20.0%
!!! TTTTTATATGATCAGGAATA+TGG + chr1_3:55717643-55717662 Msa0126610:intron 20.0%
!!! TTTTATATGATCAGGAATAT+GGG + chr1_3:55717644-55717663 Msa0126610:intron 20.0%
!!! AAAACAAACACTTTTGAAAT+AGG - chr1_3:55718104-55718123 None:intergenic 20.0%
!!! AAATGGATTTTTATATGATC+AGG + chr1_3:55717636-55717655 Msa0126610:intron 20.0%
!!! TTTTTATATGATCAGGAATA+TGG + chr1_3:55717643-55717662 Msa0126610:intron 20.0%
!!! TTTTATATGATCAGGAATAT+GGG + chr1_3:55717644-55717663 Msa0126610:intron 20.0%
!!! AAAACAAACACTTTTGAAAT+AGG - chr1_3:55718104-55718123 None:intergenic 20.0%
! ATGTAAATGACGAAGAAAAT+GGG - chr1_3:55716798-55716817 None:intergenic 25.0%
! GTGATAATTAATGTAACCAT+AGG - chr1_3:55717042-55717061 None:intergenic 25.0%
! ATGGTTACATTAATTATCAC+CGG + chr1_3:55717042-55717061 Msa0126610:intron 25.0%
!! TAAATTCATCTGAGATAACA+AGG + chr1_3:55717473-55717492 Msa0126610:intron 25.0%
!!! AGGACTTCATCTTATTTTTA+TGG + chr1_3:55717493-55717512 Msa0126610:intron 25.0%
! TTTATGGATAATTGATTGCA+AGG + chr1_3:55717509-55717528 Msa0126610:intron 25.0%
!! TTCAAATACTTCCTAACTTT+TGG - chr1_3:55717577-55717596 None:intergenic 25.0%
! TTTATATGATCAGGAATATG+GGG + chr1_3:55717645-55717664 Msa0126610:intron 25.0%
! TTGTAAACATTGATCCATAT+TGG + chr1_3:55717778-55717797 Msa0126610:CDS 25.0%
! TGTAAACATTGATCCATATT+GGG + chr1_3:55717779-55717798 Msa0126610:CDS 25.0%
! TTTGTAGAGAATTTGTGATA+AGG + chr1_3:55718202-55718221 Msa0126610:CDS 25.0%
! ATGTAAATGACGAAGAAAAT+GGG - chr1_3:55716798-55716817 None:intergenic 25.0%
! GTGATAATTAATGTAACCAT+AGG - chr1_3:55717042-55717061 None:intergenic 25.0%
! ATGGTTACATTAATTATCAC+CGG + chr1_3:55717042-55717061 Msa0126610:intron 25.0%
!! TAAATTCATCTGAGATAACA+AGG + chr1_3:55717473-55717492 Msa0126610:intron 25.0%
!!! AGGACTTCATCTTATTTTTA+TGG + chr1_3:55717493-55717512 Msa0126610:intron 25.0%
! TTTATGGATAATTGATTGCA+AGG + chr1_3:55717509-55717528 Msa0126610:intron 25.0%
!! TTCAAATACTTCCTAACTTT+TGG - chr1_3:55717577-55717596 None:intergenic 25.0%
! TTTATATGATCAGGAATATG+GGG + chr1_3:55717645-55717664 Msa0126610:intron 25.0%
! TTGTAAACATTGATCCATAT+TGG + chr1_3:55717778-55717797 Msa0126610:CDS 25.0%
! TGTAAACATTGATCCATATT+GGG + chr1_3:55717779-55717798 Msa0126610:CDS 25.0%
! TTTGTAGAGAATTTGTGATA+AGG + chr1_3:55718202-55718221 Msa0126610:CDS 25.0%
ATGATTGAATGAGTAAGAGA+CGG - chr1_3:55716707-55716726 None:intergenic 30.0%
GATGTAAATGACGAAGAAAA+TGG - chr1_3:55716799-55716818 None:intergenic 30.0%
!!! ATTGTTTCTGATGCGTTTTA+TGG + chr1_3:55716938-55716957 Msa0126610:intron 30.0%
TTAGGATCTCCATAGTTTAA+TGG + chr1_3:55716972-55716991 Msa0126610:intron 30.0%
CAAAACTATCCTAATCTATG+AGG - chr1_3:55717078-55717097 None:intergenic 30.0%
TTGATGTGATTCCAAAAGTT+AGG + chr1_3:55717563-55717582 Msa0126610:intron 30.0%
GATGGAACTTTCAAAGAAAA+TGG + chr1_3:55717619-55717638 Msa0126610:intron 30.0%
GTAAACATTGATCCATATTG+GGG + chr1_3:55717780-55717799 Msa0126610:CDS 30.0%
TTATACTTCTTACCCCAATA+TGG - chr1_3:55717795-55717814 None:intergenic 30.0%
AGTATGCATTAACAACTTCA+CGG - chr1_3:55717873-55717892 None:intergenic 30.0%
AATACTTTCCAAAGCTGTTA+AGG - chr1_3:55717956-55717975 None:intergenic 30.0%
! AAAGTATTAGAGCTCAAATG+TGG + chr1_3:55717968-55717987 Msa0126610:CDS 30.0%
AGAAGGAATGAATATGTATG+AGG + chr1_3:55718002-55718021 Msa0126610:CDS 30.0%
! TATGAGGAAGATTTTAAACC+AGG + chr1_3:55718018-55718037 Msa0126610:CDS 30.0%
! ATGAGGAAGATTTTAAACCA+GGG + chr1_3:55718019-55718038 Msa0126610:CDS 30.0%
!!! ACTTTTGAAATAGGCAACAA+TGG - chr1_3:55718095-55718114 None:intergenic 30.0%
TTCTGATGTTGAATATGTGA+AGG + chr1_3:55718122-55718141 Msa0126610:CDS 30.0%
TAGAGAATTTGTGATAAGGA+AGG + chr1_3:55718206-55718225 Msa0126610:CDS 30.0%
ATGATTGAATGAGTAAGAGA+CGG - chr1_3:55716707-55716726 None:intergenic 30.0%
GATGTAAATGACGAAGAAAA+TGG - chr1_3:55716799-55716818 None:intergenic 30.0%
!!! ATTGTTTCTGATGCGTTTTA+TGG + chr1_3:55716938-55716957 Msa0126610:intron 30.0%
TTAGGATCTCCATAGTTTAA+TGG + chr1_3:55716972-55716991 Msa0126610:intron 30.0%
CAAAACTATCCTAATCTATG+AGG - chr1_3:55717078-55717097 None:intergenic 30.0%
TTGATGTGATTCCAAAAGTT+AGG + chr1_3:55717563-55717582 Msa0126610:intron 30.0%
GATGGAACTTTCAAAGAAAA+TGG + chr1_3:55717619-55717638 Msa0126610:intron 30.0%
GTAAACATTGATCCATATTG+GGG + chr1_3:55717780-55717799 Msa0126610:CDS 30.0%
TTATACTTCTTACCCCAATA+TGG - chr1_3:55717795-55717814 None:intergenic 30.0%
AGTATGCATTAACAACTTCA+CGG - chr1_3:55717873-55717892 None:intergenic 30.0%
AATACTTTCCAAAGCTGTTA+AGG - chr1_3:55717956-55717975 None:intergenic 30.0%
! AAAGTATTAGAGCTCAAATG+TGG + chr1_3:55717968-55717987 Msa0126610:CDS 30.0%
AGAAGGAATGAATATGTATG+AGG + chr1_3:55718002-55718021 Msa0126610:CDS 30.0%
! TATGAGGAAGATTTTAAACC+AGG + chr1_3:55718018-55718037 Msa0126610:CDS 30.0%
! ATGAGGAAGATTTTAAACCA+GGG + chr1_3:55718019-55718038 Msa0126610:CDS 30.0%
!!! ACTTTTGAAATAGGCAACAA+TGG - chr1_3:55718095-55718114 None:intergenic 30.0%
TTCTGATGTTGAATATGTGA+AGG + chr1_3:55718122-55718141 Msa0126610:CDS 30.0%
TAGAGAATTTGTGATAAGGA+AGG + chr1_3:55718206-55718225 Msa0126610:CDS 30.0%
GTGAAACCTTCAAATCCTTT+GGG + chr1_3:55716594-55716613 Msa0126610:CDS 35.0%
TGATTGAATGAGTAAGAGAC+GGG - chr1_3:55716706-55716725 None:intergenic 35.0%
CAGAGTTCTACTTTGTTAAG+TGG - chr1_3:55716771-55716790 None:intergenic 35.0%
!! TGCAGGTGATAGTGATTTTA+GGG - chr1_3:55716862-55716881 None:intergenic 35.0%
!! TTGCAGGTGATAGTGATTTT+AGG - chr1_3:55716863-55716882 None:intergenic 35.0%
TAGGGTTTAACAAACATTGC+AGG - chr1_3:55716879-55716898 None:intergenic 35.0%
! GTTGATTGATTCAGGGTTTA+GGG - chr1_3:55716897-55716916 None:intergenic 35.0%
! AGTTGATTGATTCAGGGTTT+AGG - chr1_3:55716898-55716917 None:intergenic 35.0%
!! GAGCTAAGTTGATTGATTCA+GGG - chr1_3:55716904-55716923 None:intergenic 35.0%
!! TGAGCTAAGTTGATTGATTC+AGG - chr1_3:55716905-55716924 None:intergenic 35.0%
TTTATGGCCTAGTTAGACTT+AGG + chr1_3:55716954-55716973 Msa0126610:intron 35.0%
CTAACTAGGCCATTAAACTA+TGG - chr1_3:55716984-55717003 None:intergenic 35.0%
TTAATGGCCTAGTTAGACTT+AGG + chr1_3:55716988-55717007 Msa0126610:intron 35.0%
!! AGCATTGATAGTGAACTTGT+TGG + chr1_3:55717325-55717344 Msa0126610:intron 35.0%
CCAAGTTACAAAAACAGGAT+CGG - chr1_3:55717380-55717399 None:intergenic 35.0%
TGGATAATTGATTGCAAGGT+TGG + chr1_3:55717513-55717532 Msa0126610:intron 35.0%
TGAAAGAGATCATTGAGCTT+TGG + chr1_3:55717593-55717612 Msa0126610:intron 35.0%
TCTGACTCTAGTTATGACTT+TGG + chr1_3:55717693-55717712 Msa0126610:CDS 35.0%
AGGAAATATCTCGAGTGATA+TGG - chr1_3:55717741-55717760 None:intergenic 35.0%
GTATGCATTAACAACTTCAC+GGG - chr1_3:55717872-55717891 None:intergenic 35.0%
! CGCTTGATAGGTTTAGAATA+TGG + chr1_3:55717901-55717920 Msa0126610:CDS 35.0%
GAATATGTGAAGGAACTTGT+CGG + chr1_3:55718132-55718151 Msa0126610:CDS 35.0%
AATATGTGAAGGAACTTGTC+GGG + chr1_3:55718133-55718152 Msa0126610:CDS 35.0%
GTGAAACCTTCAAATCCTTT+GGG + chr1_3:55716594-55716613 Msa0126610:CDS 35.0%
TGATTGAATGAGTAAGAGAC+GGG - chr1_3:55716706-55716725 None:intergenic 35.0%
CAGAGTTCTACTTTGTTAAG+TGG - chr1_3:55716771-55716790 None:intergenic 35.0%
!! TGCAGGTGATAGTGATTTTA+GGG - chr1_3:55716862-55716881 None:intergenic 35.0%
!! TTGCAGGTGATAGTGATTTT+AGG - chr1_3:55716863-55716882 None:intergenic 35.0%
TAGGGTTTAACAAACATTGC+AGG - chr1_3:55716879-55716898 None:intergenic 35.0%
! GTTGATTGATTCAGGGTTTA+GGG - chr1_3:55716897-55716916 None:intergenic 35.0%
! AGTTGATTGATTCAGGGTTT+AGG - chr1_3:55716898-55716917 None:intergenic 35.0%
!! GAGCTAAGTTGATTGATTCA+GGG - chr1_3:55716904-55716923 None:intergenic 35.0%
!! TGAGCTAAGTTGATTGATTC+AGG - chr1_3:55716905-55716924 None:intergenic 35.0%
TTTATGGCCTAGTTAGACTT+AGG + chr1_3:55716954-55716973 Msa0126610:intron 35.0%
CTAACTAGGCCATTAAACTA+TGG - chr1_3:55716984-55717003 None:intergenic 35.0%
TTAATGGCCTAGTTAGACTT+AGG + chr1_3:55716988-55717007 Msa0126610:intron 35.0%
!! AGCATTGATAGTGAACTTGT+TGG + chr1_3:55717325-55717344 Msa0126610:intron 35.0%
CCAAGTTACAAAAACAGGAT+CGG - chr1_3:55717380-55717399 None:intergenic 35.0%
TGGATAATTGATTGCAAGGT+TGG + chr1_3:55717513-55717532 Msa0126610:intron 35.0%
TGAAAGAGATCATTGAGCTT+TGG + chr1_3:55717593-55717612 Msa0126610:intron 35.0%
TCTGACTCTAGTTATGACTT+TGG + chr1_3:55717693-55717712 Msa0126610:CDS 35.0%
AGGAAATATCTCGAGTGATA+TGG - chr1_3:55717741-55717760 None:intergenic 35.0%
GTATGCATTAACAACTTCAC+GGG - chr1_3:55717872-55717891 None:intergenic 35.0%
! CGCTTGATAGGTTTAGAATA+TGG + chr1_3:55717901-55717920 Msa0126610:CDS 35.0%
GAATATGTGAAGGAACTTGT+CGG + chr1_3:55718132-55718151 Msa0126610:CDS 35.0%
AATATGTGAAGGAACTTGTC+GGG + chr1_3:55718133-55718152 Msa0126610:CDS 35.0%
GGTGAAACCTTCAAATCCTT+TGG + chr1_3:55716593-55716612 Msa0126610:CDS 40.0%
GAAATGAAGAAGATGACGAG+AGG - chr1_3:55716654-55716673 None:intergenic 40.0%
TGGAGATCCTAAGTCTAACT+AGG - chr1_3:55716964-55716983 None:intergenic 40.0%
TGGAGATCCTAAGTCTAACT+AGG - chr1_3:55716964-55716983 None:intergenic 40.0%
GTTGATGTGCCTCATAGATT+AGG + chr1_3:55717066-55717085 Msa0126610:intron 40.0%
! GTTTGTTACACTGTGTCTAG+TGG + chr1_3:55717151-55717170 Msa0126610:intron 40.0%
TGTTTGGATTGAGTAGACCT+TGG + chr1_3:55717182-55717201 Msa0126610:intron 40.0%
AGTAGACCTTGGAGAAGAAA+GGG + chr1_3:55717193-55717212 Msa0126610:intron 40.0%
!! AGTGAACTTGTTGGTGTTGT+TGG + chr1_3:55717334-55717353 Msa0126610:CDS 40.0%
!!! CCGATCCTGTTTTTGTAACT+TGG + chr1_3:55717377-55717396 Msa0126610:CDS 40.0%
GAGTGCCAAGTTACAAAAAC+AGG - chr1_3:55717385-55717404 None:intergenic 40.0%
GTAACTTGGCACTCTATGAA+TGG + chr1_3:55717391-55717410 Msa0126610:CDS 40.0%
GTTCCTTTGAACGATGTTGA+GGG + chr1_3:55717448-55717467 Msa0126610:intron 40.0%
!! ATCATTGAGCTTTGGCTTGA+TGG + chr1_3:55717601-55717620 Msa0126610:intron 40.0%
ATATGATCAGGAATATGGGG+AGG + chr1_3:55717648-55717667 Msa0126610:intron 40.0%
GGAGGAGTTGTTACAAAACA+AGG + chr1_3:55717666-55717685 Msa0126610:CDS 40.0%
CACTCGAGATATTTCCTTGA+TGG + chr1_3:55717744-55717763 Msa0126610:CDS 40.0%
CAAGAACAGCAATACCATCA+AGG - chr1_3:55717761-55717780 None:intergenic 40.0%
! GCGTCAAACTTGTTCACTTA+TGG + chr1_3:55717815-55717834 Msa0126610:intron 40.0%
TACTATTCTGCTCGCTTGAT+AGG + chr1_3:55717889-55717908 Msa0126610:CDS 40.0%
TGCTCCAACAGTAACAACAT+TGG - chr1_3:55717932-55717951 None:intergenic 40.0%
GTATTAGAGCTCAAATGTGG+TGG + chr1_3:55717971-55717990 Msa0126610:CDS 40.0%
! AAACCAGGGTTTGCTTATCT+TGG + chr1_3:55718033-55718052 Msa0126610:CDS 40.0%
!! TTGGTGCTAGAGACAATGTA+TGG + chr1_3:55718052-55718071 Msa0126610:CDS 40.0%
!! TTGTGATAAGGAAGGTGCTT+TGG + chr1_3:55718214-55718233 Msa0126610:CDS 40.0%
GGTGAAACCTTCAAATCCTT+TGG + chr1_3:55716593-55716612 Msa0126610:CDS 40.0%
GAAATGAAGAAGATGACGAG+AGG - chr1_3:55716654-55716673 None:intergenic 40.0%
TGGAGATCCTAAGTCTAACT+AGG - chr1_3:55716964-55716983 None:intergenic 40.0%
TGGAGATCCTAAGTCTAACT+AGG - chr1_3:55716964-55716983 None:intergenic 40.0%
GTTGATGTGCCTCATAGATT+AGG + chr1_3:55717066-55717085 Msa0126610:intron 40.0%
! GTTTGTTACACTGTGTCTAG+TGG + chr1_3:55717151-55717170 Msa0126610:intron 40.0%
TGTTTGGATTGAGTAGACCT+TGG + chr1_3:55717182-55717201 Msa0126610:intron 40.0%
AGTAGACCTTGGAGAAGAAA+GGG + chr1_3:55717193-55717212 Msa0126610:intron 40.0%
!! AGTGAACTTGTTGGTGTTGT+TGG + chr1_3:55717334-55717353 Msa0126610:CDS 40.0%
!!! CCGATCCTGTTTTTGTAACT+TGG + chr1_3:55717377-55717396 Msa0126610:CDS 40.0%
GAGTGCCAAGTTACAAAAAC+AGG - chr1_3:55717385-55717404 None:intergenic 40.0%
GTAACTTGGCACTCTATGAA+TGG + chr1_3:55717391-55717410 Msa0126610:CDS 40.0%
GTTCCTTTGAACGATGTTGA+GGG + chr1_3:55717448-55717467 Msa0126610:intron 40.0%
!! ATCATTGAGCTTTGGCTTGA+TGG + chr1_3:55717601-55717620 Msa0126610:intron 40.0%
ATATGATCAGGAATATGGGG+AGG + chr1_3:55717648-55717667 Msa0126610:intron 40.0%
GGAGGAGTTGTTACAAAACA+AGG + chr1_3:55717666-55717685 Msa0126610:CDS 40.0%
CACTCGAGATATTTCCTTGA+TGG + chr1_3:55717744-55717763 Msa0126610:CDS 40.0%
CAAGAACAGCAATACCATCA+AGG - chr1_3:55717761-55717780 None:intergenic 40.0%
! GCGTCAAACTTGTTCACTTA+TGG + chr1_3:55717815-55717834 Msa0126610:intron 40.0%
TACTATTCTGCTCGCTTGAT+AGG + chr1_3:55717889-55717908 Msa0126610:CDS 40.0%
TGCTCCAACAGTAACAACAT+TGG - chr1_3:55717932-55717951 None:intergenic 40.0%
GTATTAGAGCTCAAATGTGG+TGG + chr1_3:55717971-55717990 Msa0126610:CDS 40.0%
! AAACCAGGGTTTGCTTATCT+TGG + chr1_3:55718033-55718052 Msa0126610:CDS 40.0%
!! TTGGTGCTAGAGACAATGTA+TGG + chr1_3:55718052-55718071 Msa0126610:CDS 40.0%
!! TTGTGATAAGGAAGGTGCTT+TGG + chr1_3:55718214-55718233 Msa0126610:CDS 40.0%
CACTCACCCAAAGGATTTGA+AGG - chr1_3:55716603-55716622 Msa0126600:CDS 45.0%
CTTCAAATCCTTTGGGTGAG+TGG + chr1_3:55716601-55716620 Msa0126610:CDS 45.0%
AAATCCTTTGGGTGAGTGGT+TGG + chr1_3:55716605-55716624 Msa0126610:CDS 45.0%
GAAGATGACGAGAGGAATCA+AGG - chr1_3:55716646-55716665 Msa0126600:CDS 45.0%
TCTTCATTTCTCTCCGCTTC+AGG + chr1_3:55716664-55716683 Msa0126610:CDS 45.0%
TGAATGAGTAAGAGACGGGT+AGG - chr1_3:55716702-55716721 None:intergenic 45.0%
GTAACCATAGGTGTCAGACT+CGG - chr1_3:55717030-55717049 None:intergenic 45.0%
TCTATGAGGCACATCAACAC+CGG - chr1_3:55717064-55717083 None:intergenic 45.0%
TCTAGTGGTGAAGCTGTGTT+TGG + chr1_3:55717166-55717185 Msa0126610:intron 45.0%
GAGTAGACCTTGGAGAAGAA+AGG + chr1_3:55717192-55717211 Msa0126610:intron 45.0%
ACCTTGGAGAAGAAAGGGTT+CGG + chr1_3:55717198-55717217 Msa0126610:CDS 45.0%
!! TTGGTGTTGTTGGTGATCCA+TGG + chr1_3:55717344-55717363 Msa0126610:CDS 45.0%
!! GGATCGGTTTTCAAAAGCCA+TGG - chr1_3:55717364-55717383 None:intergenic 45.0%
GGTTCCTTTGAACGATGTTG+AGG + chr1_3:55717447-55717466 Msa0126610:intron 45.0%
AGTCCCTCAACATCGTTCAA+AGG - chr1_3:55717454-55717473 None:intergenic 45.0%
GACGCCAATGTTGTTACTGT+TGG + chr1_3:55717925-55717944 Msa0126610:CDS 45.0%
TGGAGCAACCTTAACAGCTT+TGG + chr1_3:55717945-55717964 Msa0126610:CDS 45.0%
ATGTGGTGGCATGTAAGAGA+AGG + chr1_3:55717985-55718004 Msa0126610:CDS 45.0%
CACTCACCCAAAGGATTTGA+AGG - chr1_3:55716603-55716622 Msa0126600:CDS 45.0%
CTTCAAATCCTTTGGGTGAG+TGG + chr1_3:55716601-55716620 Msa0126610:CDS 45.0%
AAATCCTTTGGGTGAGTGGT+TGG + chr1_3:55716605-55716624 Msa0126610:CDS 45.0%
GAAGATGACGAGAGGAATCA+AGG - chr1_3:55716646-55716665 Msa0126600:CDS 45.0%
TCTTCATTTCTCTCCGCTTC+AGG + chr1_3:55716664-55716683 Msa0126610:CDS 45.0%
TGAATGAGTAAGAGACGGGT+AGG - chr1_3:55716702-55716721 None:intergenic 45.0%
GTAACCATAGGTGTCAGACT+CGG - chr1_3:55717030-55717049 None:intergenic 45.0%
TCTATGAGGCACATCAACAC+CGG - chr1_3:55717064-55717083 None:intergenic 45.0%
TCTAGTGGTGAAGCTGTGTT+TGG + chr1_3:55717166-55717185 Msa0126610:intron 45.0%
GAGTAGACCTTGGAGAAGAA+AGG + chr1_3:55717192-55717211 Msa0126610:intron 45.0%
ACCTTGGAGAAGAAAGGGTT+CGG + chr1_3:55717198-55717217 Msa0126610:CDS 45.0%
!! TTGGTGTTGTTGGTGATCCA+TGG + chr1_3:55717344-55717363 Msa0126610:CDS 45.0%
!! GGATCGGTTTTCAAAAGCCA+TGG - chr1_3:55717364-55717383 None:intergenic 45.0%
GGTTCCTTTGAACGATGTTG+AGG + chr1_3:55717447-55717466 Msa0126610:intron 45.0%
AGTCCCTCAACATCGTTCAA+AGG - chr1_3:55717454-55717473 None:intergenic 45.0%
GACGCCAATGTTGTTACTGT+TGG + chr1_3:55717925-55717944 Msa0126610:CDS 45.0%
TGGAGCAACCTTAACAGCTT+TGG + chr1_3:55717945-55717964 Msa0126610:CDS 45.0%
ATGTGGTGGCATGTAAGAGA+AGG + chr1_3:55717985-55718004 Msa0126610:CDS 45.0%
AACACCAACCACTCACCCAA+AGG - chr1_3:55716612-55716631 Msa0126600:CDS 50.0%
GCGAAGGAGTTAACCTGAAG+CGG - chr1_3:55716680-55716699 None:intergenic 50.0%
ACCGAACCCTTTCTTCTCCA+AGG - chr1_3:55717202-55717221 None:intergenic 50.0%
GCACCAAGATAAGCAAACCC+TGG - chr1_3:55718039-55718058 None:intergenic 50.0%
TGTGAAGGAACTTGTCGGGT+TGG + chr1_3:55718137-55718156 Msa0126610:CDS 50.0%
GTGAAGGAACTTGTCGGGTT+GGG + chr1_3:55718138-55718157 Msa0126610:CDS 50.0%
AACACCAACCACTCACCCAA+AGG - chr1_3:55716612-55716631 Msa0126600:CDS 50.0%
GCGAAGGAGTTAACCTGAAG+CGG - chr1_3:55716680-55716699 None:intergenic 50.0%
ACCGAACCCTTTCTTCTCCA+AGG - chr1_3:55717202-55717221 None:intergenic 50.0%
GCACCAAGATAAGCAAACCC+TGG - chr1_3:55718039-55718058 None:intergenic 50.0%
TGTGAAGGAACTTGTCGGGT+TGG + chr1_3:55718137-55718156 Msa0126610:CDS 50.0%
GTGAAGGAACTTGTCGGGTT+GGG + chr1_3:55718138-55718157 Msa0126610:CDS 50.0%
AGTAAGAGACGGGTAGGCGA+AGG - chr1_3:55716696-55716715 None:intergenic 55.0%
CCATAGGTGTCAGACTCGGA+CGG - chr1_3:55717026-55717045 None:intergenic 55.0%
GGGTTGGGACTGCTTGGTTT+GGG + chr1_3:55718153-55718172 Msa0126610:CDS 55.0%
! GGTTGGGACTGCTTGGTTTG+GGG + chr1_3:55718154-55718173 Msa0126610:CDS 55.0%
AGTAAGAGACGGGTAGGCGA+AGG - chr1_3:55716696-55716715 None:intergenic 55.0%
CCATAGGTGTCAGACTCGGA+CGG - chr1_3:55717026-55717045 None:intergenic 55.0%
GGGTTGGGACTGCTTGGTTT+GGG + chr1_3:55718153-55718172 Msa0126610:CDS 55.0%
! GGTTGGGACTGCTTGGTTTG+GGG + chr1_3:55718154-55718173 Msa0126610:CDS 55.0%
! GTCAGACTCGGACGGTGCTA+TGG - chr1_3:55717018-55717037 None:intergenic 60.0%
CCGTCCGAGTCTGACACCTA+TGG + chr1_3:55717023-55717042 Msa0126610:intron 60.0%
!! CTTGTCGGGTTGGGACTGCT+TGG + chr1_3:55718147-55718166 Msa0126610:CDS 60.0%
! CGGGTTGGGACTGCTTGGTT+TGG + chr1_3:55718152-55718171 Msa0126610:CDS 60.0%
!! GGGACTGCTTGGTTTGGGGA+AGG + chr1_3:55718158-55718177 Msa0126610:CDS 60.0%
! GTCAGACTCGGACGGTGCTA+TGG - chr1_3:55717018-55717037 None:intergenic 60.0%
CCGTCCGAGTCTGACACCTA+TGG + chr1_3:55717023-55717042 Msa0126610:intron 60.0%
!! CTTGTCGGGTTGGGACTGCT+TGG + chr1_3:55718147-55718166 Msa0126610:CDS 60.0%
! CGGGTTGGGACTGCTTGGTT+TGG + chr1_3:55718152-55718171 Msa0126610:CDS 60.0%
!! GGGACTGCTTGGTTTGGGGA+AGG + chr1_3:55718158-55718177 Msa0126610:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 55716591 55718245 55716591 ID=Msa0126610;Name=Msa0126610
chr1_3 mRNA 55716591 55718245 55716591 ID=Msa0126610-mRNA-1;Parent=Msa0126610;Name=Msa0126610-mRNA-1;_AED=0.20;_eAED=0.27;_QI=0|0|0|1|0|0.16|6|0|319
chr1_3 exon 55716591 55716779 55716591 ID=Msa0126610-mRNA-1:exon:17389;Parent=Msa0126610-mRNA-1
chr1_3 exon 55717198 55717292 55717198 ID=Msa0126610-mRNA-1:exon:17390;Parent=Msa0126610-mRNA-1
chr1_3 exon 55717327 55717462 55717327 ID=Msa0126610-mRNA-1:exon:17391;Parent=Msa0126610-mRNA-1
chr1_3 exon 55717581 55717587 55717581 ID=Msa0126610-mRNA-1:exon:17392;Parent=Msa0126610-mRNA-1
chr1_3 exon 55717658 55717801 55717658 ID=Msa0126610-mRNA-1:exon:17393;Parent=Msa0126610-mRNA-1
chr1_3 exon 55717857 55718245 55717857 ID=Msa0126610-mRNA-1:exon:17394;Parent=Msa0126610-mRNA-1
chr1_3 CDS 55716591 55716779 55716591 ID=Msa0126610-mRNA-1:cds;Parent=Msa0126610-mRNA-1
chr1_3 CDS 55717198 55717292 55717198 ID=Msa0126610-mRNA-1:cds;Parent=Msa0126610-mRNA-1
chr1_3 CDS 55717327 55717462 55717327 ID=Msa0126610-mRNA-1:cds;Parent=Msa0126610-mRNA-1
chr1_3 CDS 55717581 55717587 55717581 ID=Msa0126610-mRNA-1:cds;Parent=Msa0126610-mRNA-1
chr1_3 CDS 55717658 55717801 55717658 ID=Msa0126610-mRNA-1:cds;Parent=Msa0126610-mRNA-1
chr1_3 CDS 55717857 55718245 55717857 ID=Msa0126610-mRNA-1:cds;Parent=Msa0126610-mRNA-1
Gene Sequence

>Msa0126610

ATGGTGAAACCTTCAAATCCTTTGGGTGAGTGGTTGGTGTTATCACTGCGTTCCTTGATTCCTCTCGTCATCTTCTTCATTTCTCTCCGCTTCAGGTTAACTCCTTCGCCTACCCGTCTCTTACTCATTCAATCATTTGTAAGTCAGATTCTTTTTTTGCTAAGAAATTTCAACAAACCACTTAACAAAACCTTGGAGAAGAAAGGGTTCGGTGATTTGTTATTGTTAGCAGTAGCACACACGCTCTTCATCTTCAGCTTTTATTTGAGAATGACTGTAATAATCATTGATAGTGAACTTGTTGGTGTTGTTGGTGATCCATGGCTTTTGAAAACCGATCCTGTTTTTGTAACTTGGCACTCTATGAATGGTGTGAAAGAAGAATTATATTATGAAATTGTTTCGGTTCCTTTGAACGATTTAGGAAGAATATGGGGAGGAGTTGTTACAAAACAAGGATGTTCTGACTCTAGTTATGACTTTGGATCTGAATTTTATACTTCTCAACCATATCACTCGAGATATTTCCTTGATGGTATTGCTGTTCTTGTAAACATTGATCCATATTGGGCACATGTTCAAACCCGTGAAGTTGTTAATGCATACTATTCTGCTCGCTTGATAGGTTTAGAATATGGTGACGCCAATGTTGTTACTGTTGGAGCAACCTTAACAGCTTTGGAAAGTATTAGAGCTCAAATGTGGTGGCATGTAAGAGAAGGAATGAATATGTATGAGGAAGATTTTAAACCAGGGTTTGCTTATCTTGGTGCTAGAGACAATGTATGGTTGACATTCAAGTTTTACCATTGTTGCCTATTTCAAAAGTGTTTGTTTTCTGATGTTGAATATGTGAAGGAACTTGTCGGGTTGGGACTGCTTGGTTTGGGGAAGGCTGAAAAGAGTTTGTGTATGCTTTGTAGAGAATTTGTGATAAGGAAGGTGCTTTGGAGAAGATAA

Protein sequence

>Msa0126610

MVKPSNPLGEWLVLSLRSLIPLVIFFISLRFRLTPSPTRLLLIQSFVSQILFLLRNFNKPLNKTLEKKGFGDLLLLAVAHTLFIFSFYLRMTVIIIDSELVGVVGDPWLLKTDPVFVTWHSMNGVKEELYYEIVSVPLNDLGRIWGGVVTKQGCSDSSYDFGSEFYTSQPYHSRYFLDGIAVLVNIDPYWAHVQTREVVNAYYSARLIGLEYGDANVVTVGATLTALESIRAQMWWHVREGMNMYEEDFKPGFAYLGARDNVWLTFKFYHCCLFQKCLFSDVEYVKELVGLGLLGLGKAEKSLCMLCREFVIRKVLWRR*