AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0842330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 118 sgRNAs with CRISPR-Local

Find 626 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGTTTATGACATGTTAT+TGG 0.248642 5_4:+19353065 None:intergenic
TTTACTAGAACCCAAGAATA+AGG 0.276829 5_4:-19352979 Msa0842330:three_prime_UTR
TCAGTTCGTAACATCTGTTT+TGG 0.285524 5_4:-19353189 Msa0842330:three_prime_UTR
TTATACTTCTTTCTTGCGTT+TGG 0.310930 5_4:+19353554 None:intergenic
TTATACTTCTTTCTTGCGTT+TGG 0.310930 5_4:+19353986 None:intergenic
TTATACTTCTTTCTTGCGTT+TGG 0.310930 5_4:+19354130 None:intergenic
TTATACTTCTTTCTTGCGTT+TGG 0.310930 5_4:+19354274 None:intergenic
GCCTTATCGAGGCGTGTCAC+TGG 0.323045 5_4:-19352863 Msa0842330:three_prime_UTR
GCCTTTCAGACTCTTGGTTT+CGG 0.331580 5_4:-19352891 Msa0842330:three_prime_UTR
CATCCAGCCTTTCAGACTCT+TGG 0.334821 5_4:-19352897 Msa0842330:three_prime_UTR
GGTAAGGTCAGTAAACTTAA+TGG 0.336020 5_4:-19353104 Msa0842330:three_prime_UTR
GTCATGTAGATACTACTTCT+TGG 0.336964 5_4:-19352929 Msa0842330:three_prime_UTR
GAACTGAACCATTTCCTTTG+TGG 0.361304 5_4:+19353205 None:intergenic
TTTATCTCATCTATCATTGC+CGG 0.383821 5_4:-19354511 Msa0842330:CDS
CAGACTCTTGGTTTCGGACC+AGG 0.384715 5_4:-19352885 Msa0842330:three_prime_UTR
ATCAATGTTTGACGTTGAAA+AGG 0.387350 5_4:+19353358 None:intergenic
CAGTAATATACAAGCATGTA+TGG 0.388598 5_4:+19353038 None:intergenic
AGAGAGAAAATGTTGACAAA+AGG 0.391575 5_4:-19353464 Msa0842330:three_prime_UTR
ACTGAGAATGTGAACGGGTC+GGG 0.397130 5_4:-19353143 Msa0842330:three_prime_UTR
GAGAGAAAATGTTGACAAAA+GGG 0.423828 5_4:-19353463 Msa0842330:three_prime_UTR
TGTCAAGTCCACAAAGGAAA+TGG 0.430204 5_4:-19353213 Msa0842330:three_prime_UTR
GAATGAGAAGATCATATGTA+TGG 0.431467 5_4:-19352791 Msa0842330:three_prime_UTR
GTAGAGTTTGAGAAGTTTCA+CGG 0.446193 5_4:-19354019 Msa0842330:CDS
GTAGAGTTTGAGAAGTTTCA+CGG 0.446193 5_4:-19354163 Msa0842330:intron
GTAGAGTTTGAGAAGTTTCA+CGG 0.446193 5_4:-19354307 Msa0842330:CDS
AGTAGTATCTACATGACATA+TGG 0.468171 5_4:+19352935 None:intergenic
TTTGAATGAAGAACCTTGTC+CGG 0.468695 5_4:+19354478 None:intergenic
CCCAGTGACACGCCTCGATA+AGG 0.472754 5_4:+19352862 None:intergenic
CACTATACACAGCAGAGAGC+TGG 0.480479 5_4:+19352718 None:intergenic
GTCCACTTGTTTCTTCATTG+TGG 0.485485 5_4:+19354558 None:intergenic
TCAATGTTTGACGTTGAAAA+GGG 0.489173 5_4:+19353359 None:intergenic
AAACCAAGAGTCTGAAAGGC+TGG 0.490717 5_4:+19352894 None:intergenic
TCGGGGAAGACTGTGGTGAT+TGG 0.493788 5_4:-19353125 Msa0842330:three_prime_UTR
CCTTATCGAGGCGTGTCACT+GGG 0.499150 5_4:-19352862 Msa0842330:three_prime_UTR
TGTGAAGATCGTGCTGCTCC+AGG 0.512753 5_4:-19353251 Msa0842330:three_prime_UTR
ATCTATCATTGCCGGAGATG+TGG 0.518196 5_4:-19354503 Msa0842330:CDS
AATGATGCAGAAGGTGAGGA+GGG 0.530994 5_4:-19353668 Msa0842330:intron
AATGATGCAGAAGGTGAGGA+GGG 0.530994 5_4:-19353956 Msa0842330:CDS
AATGATGCAGAAGGTGAGGA+GGG 0.530994 5_4:-19354100 Msa0842330:intron
AATGATGCAGAAGGTGAGGA+GGG 0.530994 5_4:-19354244 Msa0842330:CDS
AATGATGCAGAAGGTGAGGA+GGG 0.530994 5_4:-19354388 Msa0842330:intron
CTGAGAATGTGAACGGGTCG+GGG 0.533198 5_4:-19353142 Msa0842330:three_prime_UTR
CATTGCCGGAGATGTGGATC+CGG 0.537803 5_4:-19354497 Msa0842330:CDS
CGCAGAACTGAGAATGTGAA+CGG 0.551196 5_4:-19353149 Msa0842330:three_prime_UTR
CTTGTTTCTTCATTGTGGTG+TGG 0.552786 5_4:+19354563 None:intergenic
AACTTGATATAGACGCACCA+TGG 0.555359 5_4:+19353004 None:intergenic
CTTGTCCGGATCCACATCTC+CGG 0.559598 5_4:+19354492 None:intergenic
CGGAGATGTGGATCCGGACA+AGG 0.563519 5_4:-19354491 Msa0842330:intron
GCATAAAGCTGAGAAAGATA+AGG 0.568780 5_4:+19354536 None:intergenic
TAATGATGCAGAAGGTGAGG+AGG 0.569416 5_4:-19353669 Msa0842330:intron
TAATGATGCAGAAGGTGAGG+AGG 0.569416 5_4:-19353957 Msa0842330:CDS
TAATGATGCAGAAGGTGAGG+AGG 0.569416 5_4:-19354101 Msa0842330:intron
TAATGATGCAGAAGGTGAGG+AGG 0.569416 5_4:-19354245 Msa0842330:CDS
TAATGATGCAGAAGGTGAGG+AGG 0.569416 5_4:-19354389 Msa0842330:intron
CATGACATATGGCTATAGCT+TGG 0.569841 5_4:+19352946 None:intergenic
ACTTGATATAGACGCACCAT+GGG 0.571384 5_4:+19353005 None:intergenic
GCAGAACTGAGAATGTGAAC+GGG 0.573207 5_4:-19353148 Msa0842330:three_prime_UTR
CCTTGTCCTCATCTCCATGT+TGG 0.575942 5_4:+19353627 None:intergenic
CCTTGTCCTCATCTCCATGT+TGG 0.575942 5_4:+19353915 None:intergenic
CCTTGTCCTCATCTCCATGT+TGG 0.575942 5_4:+19354059 None:intergenic
CCTTGTCCTCATCTCCATGT+TGG 0.575942 5_4:+19354203 None:intergenic
CCTTGTCCTCATCTCCATGT+TGG 0.575942 5_4:+19354347 None:intergenic
TCCGAAACCAAGAGTCTGAA+AGG 0.581024 5_4:+19352890 None:intergenic
AACTGAGAATGTGAACGGGT+CGG 0.581467 5_4:-19353144 Msa0842330:three_prime_UTR
AAGGTCAGTAAACTTAATGG+TGG 0.582160 5_4:-19353101 Msa0842330:three_prime_UTR
TGACACGCCTCGATAAGGCC+TGG 0.583625 5_4:+19352867 None:intergenic
GAAGACTGTGGTGATTGGTA+AGG 0.585023 5_4:-19353120 Msa0842330:three_prime_UTR
GGAGGGAAAGATGACGGTGA+GGG 0.585849 5_4:-19353651 Msa0842330:three_prime_UTR
GGAGGGAAAGATGACGGTGA+GGG 0.585849 5_4:-19353939 Msa0842330:CDS
GGAGGGAAAGATGACGGTGA+GGG 0.585849 5_4:-19354083 Msa0842330:CDS
GGAGGGAAAGATGACGGTGA+GGG 0.585849 5_4:-19354227 Msa0842330:CDS
GGAGGGAAAGATGACGGTGA+GGG 0.585849 5_4:-19354371 Msa0842330:CDS
AAACATTATAATGATGCAGA+AGG 0.587451 5_4:-19353965 Msa0842330:CDS
AAACATTATAATGATGCAGA+AGG 0.587451 5_4:-19354253 Msa0842330:CDS
AGAGAAAATGTTGACAAAAG+GGG 0.605845 5_4:-19353462 Msa0842330:three_prime_UTR
AAACATTATAATGACGCAGA+AGG 0.608284 5_4:-19353533 Msa0842330:three_prime_UTR
AGTAATATACAAGCATGTAT+GGG 0.610632 5_4:+19353039 None:intergenic
AGGTCAGTAAACTTAATGGT+GGG 0.612539 5_4:-19353100 Msa0842330:three_prime_UTR
TTATAATGATGCAGAAGGTG+AGG 0.626601 5_4:-19353672 Msa0842330:intron
TTATAATGATGCAGAAGGTG+AGG 0.626601 5_4:-19353960 Msa0842330:CDS
TTATAATGATGCAGAAGGTG+AGG 0.626601 5_4:-19354248 Msa0842330:CDS
AGGTGAGGAGGGAAAGATGA+CGG 0.628323 5_4:-19353657 Msa0842330:exon
AGGTGAGGAGGGAAAGATGA+CGG 0.628323 5_4:-19353945 Msa0842330:CDS
AGGTGAGGAGGGAAAGATGA+CGG 0.628323 5_4:-19354089 Msa0842330:CDS
AGGTGAGGAGGGAAAGATGA+CGG 0.628323 5_4:-19354233 Msa0842330:CDS
AGGTGAGGAGGGAAAGATGA+CGG 0.628323 5_4:-19354377 Msa0842330:CDS
CACCACAATGAAGAAACAAG+TGG 0.628328 5_4:-19354560 Msa0842330:CDS
TTATAATGACGCAGAAGGTG+AGG 0.631820 5_4:-19353528 Msa0842330:three_prime_UTR
CTGCTGTGTATAGTGTACTC+CGG 0.635464 5_4:-19352710 Msa0842330:three_prime_UTR
AAAAGGGGTGATGACGCAAA+TGG 0.640943 5_4:-19353447 Msa0842330:three_prime_UTR
GAGGGTCCAACATGGAGATG+AGG 0.641612 5_4:-19353633 Msa0842330:three_prime_UTR
GAGGGTCCAACATGGAGATG+AGG 0.641612 5_4:-19353921 Msa0842330:CDS
GAGGGTCCAACATGGAGATG+AGG 0.641612 5_4:-19354065 Msa0842330:CDS
GAGGGTCCAACATGGAGATG+AGG 0.641612 5_4:-19354209 Msa0842330:CDS
GAGGGTCCAACATGGAGATG+AGG 0.641612 5_4:-19354353 Msa0842330:CDS
ATGACGGTGAGGGTCCAACA+TGG 0.641738 5_4:-19353641 Msa0842330:three_prime_UTR
ATGACGGTGAGGGTCCAACA+TGG 0.641738 5_4:-19353929 Msa0842330:CDS
ATGACGGTGAGGGTCCAACA+TGG 0.641738 5_4:-19354073 Msa0842330:CDS
ATGACGGTGAGGGTCCAACA+TGG 0.641738 5_4:-19354217 Msa0842330:CDS
ATGACGGTGAGGGTCCAACA+TGG 0.641738 5_4:-19354361 Msa0842330:CDS
CCAACATGGAGATGAGGACA+AGG 0.645853 5_4:-19353627 Msa0842330:three_prime_UTR
CCAACATGGAGATGAGGACA+AGG 0.645853 5_4:-19353915 Msa0842330:CDS
CCAACATGGAGATGAGGACA+AGG 0.645853 5_4:-19354059 Msa0842330:CDS
CCAACATGGAGATGAGGACA+AGG 0.645853 5_4:-19354203 Msa0842330:intron
CCAACATGGAGATGAGGACA+AGG 0.645853 5_4:-19354347 Msa0842330:CDS
AGGAGGGAAAGATGACGGTG+AGG 0.649960 5_4:-19353652 Msa0842330:three_prime_UTR
AGGAGGGAAAGATGACGGTG+AGG 0.649960 5_4:-19353940 Msa0842330:CDS
AGGAGGGAAAGATGACGGTG+AGG 0.649960 5_4:-19354084 Msa0842330:CDS
AGGAGGGAAAGATGACGGTG+AGG 0.649960 5_4:-19354228 Msa0842330:CDS
AGGAGGGAAAGATGACGGTG+AGG 0.649960 5_4:-19354372 Msa0842330:CDS
TTTCGGACCAGGCCTTATCG+AGG 0.665072 5_4:-19352874 Msa0842330:three_prime_UTR
TTACTGTCACTCAAACCCCA+TGG 0.666579 5_4:-19353021 Msa0842330:three_prime_UTR
ACAATGTGTCAAGTCCACAA+AGG 0.692788 5_4:-19353219 Msa0842330:three_prime_UTR
GAACGGGTCGGGGAAGACTG+TGG 0.694128 5_4:-19353132 Msa0842330:three_prime_UTR
ATGACAACGAGGGTCCACCC+TGG 0.696791 5_4:-19353497 Msa0842330:three_prime_UTR
GGAGAGAAAGATGACAACGA+GGG 0.698398 5_4:-19353507 Msa0842330:three_prime_UTR
AGGAGAGAAAGATGACAACG+AGG 0.732766 5_4:-19353508 Msa0842330:three_prime_UTR
CTTGATATAGACGCACCATG+GGG 0.752050 5_4:+19353006 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGATTTATTTCTTTTATTT+TGG - chr5_4:19352986-19353005 Msa0842330:three_prime_UTR 10.0%
!! TCATTTAATAAAAATCAAAT+AGG + chr5_4:19353719-19353738 None:intergenic 10.0%
!! ACAAGTAAAATAAAAATAAA+TGG - chr5_4:19355526-19355545 Msa0842330:intron 10.0%
!!! AAAATAAAAATAAATGGTTT+TGG - chr5_4:19355532-19355551 Msa0842330:intron 10.0%
!!! GATTTATTTTATTTTAGATT+AGG - chr5_4:19358500-19358519 Msa0842330:intron 10.0%
!!! TTTTATTAGAAAATAATATG+TGG - chr5_4:19358681-19358700 Msa0842330:intron 10.0%
!! TTTATTAGAAAATAATATGT+GGG - chr5_4:19358682-19358701 Msa0842330:intron 10.0%
!!! ATTTTAATGTTAAATGATAT+GGG + chr5_4:19359357-19359376 None:intergenic 10.0%
!!! AATTTTAATGTTAAATGATA+TGG + chr5_4:19359358-19359377 None:intergenic 10.0%
!! ATATAAATATGTGATATTTG+AGG - chr5_4:19353132-19353151 Msa0842330:three_prime_UTR 15.0%
!! TATATGTTATTATAAGATGT+TGG - chr5_4:19353687-19353706 Msa0842330:intron 15.0%
!! AAAAAAAATTAAACATCCAA+GGG + chr5_4:19354157-19354176 None:intergenic 15.0%
!! AAAAAAAAATTAAACATCCA+AGG + chr5_4:19354158-19354177 None:intergenic 15.0%
!!! TTTAATGAAATTTTAGAGAT+TGG + chr5_4:19354269-19354288 None:intergenic 15.0%
!!! TCTCTAAAATTTCATTAAAA+AGG - chr5_4:19354270-19354289 Msa0842330:CDS 15.0%
!!! CTCTAAAATTTCATTAAAAA+GGG - chr5_4:19354271-19354290 Msa0842330:CDS 15.0%
!!! TCTAAAATTTCATTAAAAAG+GGG - chr5_4:19354272-19354291 Msa0842330:CDS 15.0%
!! AAAATATAGAAACAAAACTA+CGG - chr5_4:19354360-19354379 Msa0842330:CDS 15.0%
!! AAACAATTTCTTTGAATTTA+CGG - chr5_4:19354871-19354890 Msa0842330:intron 15.0%
!!! TTTTATTTATTGAGTCAATA+AGG + chr5_4:19356558-19356577 None:intergenic 15.0%
!! AATAATTAATTAAACATCCA+AGG + chr5_4:19358163-19358182 None:intergenic 15.0%
!! AAAATTAATTAAACATGCAA+GGG + chr5_4:19358654-19358673 None:intergenic 15.0%
!! TAAAATTAATTAAACATGCA+AGG + chr5_4:19358655-19358674 None:intergenic 15.0%
!! TTATTAGAAAATAATATGTG+GGG - chr5_4:19358683-19358702 Msa0842330:intron 15.0%
!!! TTACATGATTAGTTTTTTAA+AGG - chr5_4:19359303-19359322 Msa0842330:intron 15.0%
!!! CTTCAAAATGTTTTAAATTG+CGG - chr5_4:19352789-19352808 Msa0842330:three_prime_UTR 20.0%
!!! TTCAAAATGTTTTAAATTGC+GGG - chr5_4:19352790-19352809 Msa0842330:three_prime_UTR 20.0%
!!! CAGTTTGTTGTATAAAAATA+AGG - chr5_4:19352903-19352922 Msa0842330:three_prime_UTR 20.0%
!! TGTTGTATAAAAATAAGGAT+TGG - chr5_4:19352908-19352927 Msa0842330:three_prime_UTR 20.0%
!!! TTCTAATTGTTTTTGAGATA+TGG - chr5_4:19352935-19352954 Msa0842330:three_prime_UTR 20.0%
!! TTAAAGATGTGATTTAAAGA+TGG - chr5_4:19353295-19353314 Msa0842330:three_prime_UTR 20.0%
!! TAAAGATGTGATTTAAAGAT+GGG - chr5_4:19353296-19353315 Msa0842330:three_prime_UTR 20.0%
!! TTTATATATACTTGAAGATG+TGG - chr5_4:19353446-19353465 Msa0842330:three_prime_UTR 20.0%
!!! TAATTTTTTTTTTGCTAAGC+AGG - chr5_4:19354166-19354185 Msa0842330:intron 20.0%
!!! AATTTTTTTTTTGCTAAGCA+GGG - chr5_4:19354167-19354186 Msa0842330:intron 20.0%
!!! AAGAAATTGTTTTAGTTCTT+TGG + chr5_4:19354863-19354882 None:intergenic 20.0%
!! TTCCAATATAAAAGAATCAT+TGG - chr5_4:19355092-19355111 Msa0842330:intron 20.0%
!! TCCAATATAAAAGAATCATT+GGG - chr5_4:19355093-19355112 Msa0842330:intron 20.0%
!! ATAAAGGATTTAACAAATAG+CGG - chr5_4:19355470-19355489 Msa0842330:intron 20.0%
!! TATAGAGATAAAAAGTGATT+AGG - chr5_4:19355559-19355578 Msa0842330:intron 20.0%
!!! AATAATTCTGGTTAATCTAA+CGG + chr5_4:19355814-19355833 None:intergenic 20.0%
!! GAATAAAAAGAGAATGAAAT+AGG + chr5_4:19356368-19356387 None:intergenic 20.0%
!! CACAAAAGTTGTTAAAAAAA+TGG - chr5_4:19358979-19358998 Msa0842330:intron 20.0%
!! AAACTAATCATGTAAAACAA+AGG + chr5_4:19359298-19359317 None:intergenic 20.0%
!!! TTACATGATTAGTTTTGTAA+AGG - chr5_4:19359413-19359432 Msa0842330:intron 20.0%
!!! AATTTTGCAAGTATATTTTC+TGG + chr5_4:19360678-19360697 None:intergenic 20.0%
!! AAATGTTTATGACATGTTAT+TGG + chr5_4:19360999-19361018 None:intergenic 20.0%
!!! TTAATCTTTTCCTTATTCTT+GGG + chr5_4:19361095-19361114 None:intergenic 20.0%
!! TTTTATACAACAAACTGTGT+CGG + chr5_4:19352900-19352919 None:intergenic 25.0%
!!! TGAGATATGGATTCTAAAAT+TGG - chr5_4:19352948-19352967 Msa0842330:three_prime_UTR 25.0%
! AAAGATGTGATTTAAAGATG+GGG - chr5_4:19353297-19353316 Msa0842330:three_prime_UTR 25.0%
!! AATTGTTGTGTTCTTTTATC+TGG - chr5_4:19353795-19353814 Msa0842330:intron 25.0%
!!! TATTTCTGTTCTTTTTCTGA+GGG + chr5_4:19354336-19354355 None:intergenic 25.0%
!!! TTATTTCTGTTCTTTTTCTG+AGG + chr5_4:19354337-19354356 None:intergenic 25.0%
! AAATAGCTATACAGATAAGT+TGG + chr5_4:19354493-19354512 None:intergenic 25.0%
! TATTTCCTTCACGAAAAATA+TGG - chr5_4:19354508-19354527 Msa0842330:CDS 25.0%
! ATTTCCTTCACGAAAAATAT+GGG - chr5_4:19354509-19354528 Msa0842330:CDS 25.0%
!! TCCCAATGATTCTTTTATAT+TGG + chr5_4:19355097-19355116 None:intergenic 25.0%
! TAAAGGATTTAACAAATAGC+GGG - chr5_4:19355471-19355490 Msa0842330:intron 25.0%
! ATCAATTAATTATCGCTGTT+TGG - chr5_4:19355590-19355609 Msa0842330:intron 25.0%
!! ATAATTCTGGTTAATCTAAC+GGG + chr5_4:19355813-19355832 None:intergenic 25.0%
! TGAATTGGATCTAATAATTC+TGG + chr5_4:19355826-19355845 None:intergenic 25.0%
! AAAGAGTTTATACAATCACA+TGG - chr5_4:19355959-19355978 Msa0842330:intron 25.0%
! AAAAAGGATGTGTAATTCTT+AGG + chr5_4:19356397-19356416 None:intergenic 25.0%
!!! ATTACACATCCTTTTTCATA+TGG - chr5_4:19356401-19356420 Msa0842330:intron 25.0%
! TATATGTCTACGAATATACT+TGG + chr5_4:19356502-19356521 None:intergenic 25.0%
! AAAACAAACTTGGAAATCAA+AGG + chr5_4:19357233-19357252 None:intergenic 25.0%
!!! TTCAAAGACTATTTTTTACG+AGG + chr5_4:19357464-19357483 None:intergenic 25.0%
! AATTAATTAAACATCCAAGG+CGG + chr5_4:19358160-19358179 None:intergenic 25.0%
!! AATTGTTGTGTTCTTTTATC+TGG - chr5_4:19353795-19353814 Msa0842330:intron 25.0%
! AAAATAATATGTGGGGTTTA+GGG - chr5_4:19358196-19358215 Msa0842330:intron 25.0%
!!! TGTAGGTTTTTTCAAAAACA+AGG + chr5_4:19358792-19358811 None:intergenic 25.0%
!!! ACACTACTCTAAAGTTAAAA+TGG + chr5_4:19358828-19358847 None:intergenic 25.0%
! ATGAAAAATACGTAGGAATT+GGG + chr5_4:19359141-19359160 None:intergenic 25.0%
! AATGAAAAATACGTAGGAAT+TGG + chr5_4:19359142-19359161 None:intergenic 25.0%
! ACTAATAAGAATTTACACCT+TGG + chr5_4:19359186-19359205 None:intergenic 25.0%
! TTCAATAGAGATTAAAAGTC+GGG + chr5_4:19359219-19359238 None:intergenic 25.0%
! GTTCAATAGAGATTAAAAGT+CGG + chr5_4:19359220-19359239 None:intergenic 25.0%
! CATAAAAAATAATTAGTGCC+TGG + chr5_4:19359443-19359462 None:intergenic 25.0%
!! TTTTTATGTTTGATGTTTGC+AGG - chr5_4:19359455-19359474 Msa0842330:intron 25.0%
! AAACATTATAATGATGCAGA+AGG - chr5_4:19359664-19359683 Msa0842330:intron 25.0%
! AAACATTATAATGATGCAGA+AGG - chr5_4:19359664-19359683 Msa0842330:intron 25.0%
! AAACATTATAATGATGCAGA+AGG - chr5_4:19359664-19359683 Msa0842330:intron 25.0%
! AAACATTATAATGATGCAGA+AGG - chr5_4:19359664-19359683 Msa0842330:intron 25.0%
! AAACATTATAATGATGCAGA+AGG - chr5_4:19359664-19359683 Msa0842330:intron 25.0%
! AAACATTATAATGATGCAGA+AGG - chr5_4:19359664-19359683 Msa0842330:intron 25.0%
! AGTAATATACAAGCATGTAT+GGG + chr5_4:19361025-19361044 None:intergenic 25.0%
!! GTTAATCTTTTCCTTATTCT+TGG + chr5_4:19361096-19361115 None:intergenic 25.0%
!! AAAATGTTTTAAATTGCGGG+AGG - chr5_4:19352793-19352812 Msa0842330:three_prime_UTR 30.0%
! GCATGATATTTAAAGTCACT+AGG + chr5_4:19352854-19352873 None:intergenic 30.0%
! GCATTTGTTGAGTCATTATT+TGG - chr5_4:19353245-19353264 Msa0842330:three_prime_UTR 30.0%
AAGATGTGATTTAAAGATGG+GGG - chr5_4:19353298-19353317 Msa0842330:three_prime_UTR 30.0%
ATGCATATAAAGTCGAGTTA+TGG - chr5_4:19353363-19353382 Msa0842330:three_prime_UTR 30.0%
!! TGTAATTGATGTGCTATTTG+AGG - chr5_4:19353536-19353555 Msa0842330:three_prime_UTR 30.0%
!! ATGATTTGTATTTTGCCAAG+TGG - chr5_4:19353633-19353652 Msa0842330:three_prime_UTR 30.0%
AAGAATATCAAGTAACCACT+TGG + chr5_4:19353651-19353670 None:intergenic 30.0%
!! ATGAAATTTTAGAGATTGGC+AGG + chr5_4:19354265-19354284 None:intergenic 30.0%
AGGGGAAAAATATATACAGA+AGG - chr5_4:19354290-19354309 Msa0842330:CDS 30.0%
GGGGAAAAATATATACAGAA+GGG - chr5_4:19354291-19354310 Msa0842330:CDS 30.0%
GGGAAAAATATATACAGAAG+GGG - chr5_4:19354292-19354311 Msa0842330:CDS 30.0%
GGAAAAATATATACAGAAGG+GGG - chr5_4:19354293-19354312 Msa0842330:CDS 30.0%
GAAAAATATATACAGAAGGG+GGG - chr5_4:19354294-19354313 Msa0842330:CDS 30.0%
AAAAATATATACAGAAGGGG+GGG - chr5_4:19354295-19354314 Msa0842330:CDS 30.0%
ATCATGGATGGATGAATATT+TGG + chr5_4:19354650-19354669 None:intergenic 30.0%
! CTATGCTTTTATTCTTGCTA+TGG + chr5_4:19354685-19354704 None:intergenic 30.0%
AAGACCAATGTTACAAGAAA+AGG - chr5_4:19354728-19354747 Msa0842330:intron 30.0%
AATACAGATGGTTCAGTTAT+TGG + chr5_4:19354810-19354829 None:intergenic 30.0%
TGGTTGAAAGTTAATACAGA+TGG + chr5_4:19354822-19354841 None:intergenic 30.0%
ATCTGTATTAACTTTCAACC+AGG - chr5_4:19354821-19354840 Msa0842330:intron 30.0%
TCTGTATTAACTTTCAACCA+GGG - chr5_4:19354822-19354841 Msa0842330:intron 30.0%
AACCGAAAATTCATCAAGAA+AGG - chr5_4:19354905-19354924 Msa0842330:intron 30.0%
ACCGAAAATTCATCAAGAAA+GGG - chr5_4:19354906-19354925 Msa0842330:intron 30.0%
! TCCCTTTCTTGATGAATTTT+CGG + chr5_4:19354910-19354929 None:intergenic 30.0%
TAAAAGAATCATTGGGAAGA+TGG - chr5_4:19355100-19355119 Msa0842330:intron 30.0%
!!! TCCAATGACTTGTTTTTTCA+AGG - chr5_4:19355162-19355181 Msa0842330:intron 30.0%
ACCTTGAAAAAACAAGTCAT+TGG + chr5_4:19355166-19355185 None:intergenic 30.0%
CATAAACATACATCATGATC+TGG + chr5_4:19355272-19355291 None:intergenic 30.0%
TCATGATGTATGTTTATGCT+TGG - chr5_4:19355274-19355293 Msa0842330:intron 30.0%
CATGATGTATGTTTATGCTT+GGG - chr5_4:19355275-19355294 Msa0842330:intron 30.0%
ATTTATAAGTTCGTATCCAC+AGG - chr5_4:19355412-19355431 Msa0842330:intron 30.0%
TTTATAAGTTCGTATCCACA+GGG - chr5_4:19355413-19355432 Msa0842330:intron 30.0%
TTAGATCCAATTCAATAGCT+AGG - chr5_4:19355832-19355851 Msa0842330:intron 30.0%
TAGATCCAATTCAATAGCTA+GGG - chr5_4:19355833-19355852 Msa0842330:intron 30.0%
!! CTAGCTAATTTGCTTTGATT+AGG + chr5_4:19356016-19356035 None:intergenic 30.0%
GAGAAAGAAACATGTATATG+AGG + chr5_4:19356278-19356297 None:intergenic 30.0%
ATGAGTGGAGTTTCTATAAA+AGG + chr5_4:19356300-19356319 None:intergenic 30.0%
AAGAGAATGAAATAGGCATT+GGG + chr5_4:19356361-19356380 None:intergenic 30.0%
AAAGAGAATGAAATAGGCAT+TGG + chr5_4:19356362-19356381 None:intergenic 30.0%
ACAAAAGAGCCATATGAAAA+AGG + chr5_4:19356413-19356432 None:intergenic 30.0%
!! CTATTATTACTACTGGTTTG+TGG + chr5_4:19356526-19356545 None:intergenic 30.0%
TCATCAGCTATTATTACTAC+TGG + chr5_4:19356533-19356552 None:intergenic 30.0%
TGTTTGTACCTCAAATGTTA+AGG - chr5_4:19356847-19356866 Msa0842330:intron 30.0%
CATTTAAATCTTTGTCACCA+TGG - chr5_4:19356876-19356895 Msa0842330:intron 30.0%
! AATGAAGAAGTGCAAAATGA+TGG + chr5_4:19356908-19356927 None:intergenic 30.0%
!!! TCCAAGTTTGTTTTGATCTT+TGG - chr5_4:19357239-19357258 Msa0842330:intron 30.0%
!!! CCAAGTTTGTTTTGATCTTT+GGG - chr5_4:19357240-19357259 Msa0842330:intron 30.0%
! GGAAAGAAGAATGTTGATAA+CGG + chr5_4:19357283-19357302 None:intergenic 30.0%
TATCAACATTCTTCTTTCCA+AGG - chr5_4:19357284-19357303 Msa0842330:intron 30.0%
!!! ATTCTTTTTTGTTTCGCAAG+AGG + chr5_4:19357755-19357774 None:intergenic 30.0%
CAGAAGATATGGAAAGTTAA+AGG + chr5_4:19357817-19357836 None:intergenic 30.0%
!!! AGCAAAAACATTTTTTGCCA+AGG - chr5_4:19358077-19358096 Msa0842330:intron 30.0%
!!! AAAACATTTTTTGCCAAGGT+CGG - chr5_4:19358081-19358100 Msa0842330:intron 30.0%
GAAAATAATATGTGGGGTTT+AGG - chr5_4:19358689-19358708 Msa0842330:intron 30.0%
TTCAAAAACAAGGATTGTAG+AGG + chr5_4:19358782-19358801 None:intergenic 30.0%
GTTAAAATGGAGTAAGTATG+TGG + chr5_4:19358815-19358834 None:intergenic 30.0%
CAATTTATGTGACAACCAAA+TGG - chr5_4:19358859-19358878 Msa0842330:intron 30.0%
TGCATGAATGAAAAATACGT+AGG + chr5_4:19359148-19359167 None:intergenic 30.0%
TCAATAGAGATTAAAAGTCG+GGG + chr5_4:19359218-19359237 None:intergenic 30.0%
AATGATATGGGTTTAGTGAT+GGG + chr5_4:19359345-19359364 None:intergenic 30.0%
AAATGATATGGGTTTAGTGA+TGG + chr5_4:19359346-19359365 None:intergenic 30.0%
!!! TAGTTTTGTAAAGGTTAACC+AGG - chr5_4:19359422-19359441 Msa0842330:intron 30.0%
TTTATCTCATCTATCATTGC+CGG - chr5_4:19359550-19359569 Msa0842330:intron 30.0%
TTATACTTCTTTCTTGCGTT+TGG + chr5_4:19359790-19359809 None:intergenic 30.0%
TTATACTTCTTTCTTGCGTT+TGG + chr5_4:19359790-19359809 None:intergenic 30.0%
TTATACTTCTTTCTTGCGTT+TGG + chr5_4:19359790-19359809 None:intergenic 30.0%
TTATACTTCTTTCTTGCGTT+TGG + chr5_4:19359790-19359809 None:intergenic 30.0%
TTATACTTCTTTCTTGCGTT+TGG + chr5_4:19359790-19359809 None:intergenic 30.0%
TTATACTTCTTTCTTGCGTT+TGG + chr5_4:19359790-19359809 None:intergenic 30.0%
AAACATTATAATGACGCAGA+AGG - chr5_4:19360528-19360547 Msa0842330:intron 30.0%
AGAGAGAAAATGTTGACAAA+AGG - chr5_4:19360597-19360616 Msa0842330:intron 30.0%
GAGAGAAAATGTTGACAAAA+GGG - chr5_4:19360598-19360617 Msa0842330:intron 30.0%
AGAGAAAATGTTGACAAAAG+GGG - chr5_4:19360599-19360618 Msa0842330:intron 30.0%
TCAATGTTTGACGTTGAAAA+GGG + chr5_4:19360705-19360724 None:intergenic 30.0%
ATCAATGTTTGACGTTGAAA+AGG + chr5_4:19360706-19360725 None:intergenic 30.0%
TCGTGTTAAAAAGATGATGA+GGG - chr5_4:19360773-19360792 Msa0842330:intron 30.0%
!!! ACACATTGTTTTTTTTCACC+TGG + chr5_4:19360831-19360850 None:intergenic 30.0%
CAGTAATATACAAGCATGTA+TGG + chr5_4:19361026-19361045 None:intergenic 30.0%
TTTACTAGAACCCAAGAATA+AGG - chr5_4:19361082-19361101 Msa0842330:intron 30.0%
AGTAGTATCTACATGACATA+TGG + chr5_4:19361129-19361148 None:intergenic 30.0%
! TGTTTGAGAATGAGTTTTCT+TGG - chr5_4:19361222-19361241 Msa0842330:intron 30.0%
! GTTTGAGAATGAGTTTTCTT+GGG - chr5_4:19361223-19361242 Msa0842330:intron 30.0%
GAATGAGAAGATCATATGTA+TGG - chr5_4:19361270-19361289 Msa0842330:intron 30.0%
TAAAAACTTCTGTTTGCTTC+TGG - chr5_4:19361316-19361335 Msa0842330:intron 30.0%
ATAGCAGGATGAATAGCTTT+AGG - chr5_4:19352828-19352847 Msa0842330:three_prime_UTR 35.0%
ATACCTCTGATATCCAAAAC+TGG - chr5_4:19353334-19353353 Msa0842330:three_prime_UTR 35.0%
AACTCGACTTTATATGCATG+TGG + chr5_4:19353362-19353381 None:intergenic 35.0%
TGATTATGCATCTCTTGTGT+TGG - chr5_4:19353829-19353848 Msa0842330:intron 35.0%
!! TAGTAGCACTTATCGCTTTT+TGG - chr5_4:19353925-19353944 Msa0842330:CDS 35.0%
!!! AGTAGCACTTATCGCTTTTT+GGG - chr5_4:19353926-19353945 Msa0842330:CDS 35.0%
ATGCTCTGATATGTGACATT+AGG - chr5_4:19353965-19353984 Msa0842330:CDS 35.0%
TGCTCTGATATGTGACATTA+GGG - chr5_4:19353966-19353985 Msa0842330:CDS 35.0%
TGATATGTGACATTAGGGAT+TGG - chr5_4:19353971-19353990 Msa0842330:CDS 35.0%
GATATGTGACATTAGGGATT+GGG - chr5_4:19353972-19353991 Msa0842330:CDS 35.0%
ATATGTGACATTAGGGATTG+GGG - chr5_4:19353973-19353992 Msa0842330:CDS 35.0%
AAAATATATACAGAAGGGGG+GGG - chr5_4:19354296-19354315 Msa0842330:CDS 35.0%
GATTTCTATCGAGACAGAAT+TGG + chr5_4:19354405-19354424 None:intergenic 35.0%
ATGTGATTAAGGGATCTGTT+TGG + chr5_4:19354458-19354477 None:intergenic 35.0%
GATATGGGACATGTGATTAA+GGG + chr5_4:19354468-19354487 None:intergenic 35.0%
! TAGCTATACAGATAAGTTGG+CGG + chr5_4:19354490-19354509 None:intergenic 35.0%
! TCTTCCCATATTTTTCGTGA+AGG + chr5_4:19354516-19354535 None:intergenic 35.0%
AATAGATGGCATAACTCTCA+GGG + chr5_4:19354558-19354577 None:intergenic 35.0%
!! TTGTAACATTGGTCTTACCT+CGG + chr5_4:19354724-19354743 None:intergenic 35.0%
!! GGAATTTTTAGGGATTCCTT+AGG + chr5_4:19354768-19354787 None:intergenic 35.0%
TGCTAACCAAATCATGTGAA+TGG - chr5_4:19355049-19355068 Msa0842330:intron 35.0%
ACCAAATCATGTGAATGGTA+TGG - chr5_4:19355054-19355073 Msa0842330:intron 35.0%
TCCATACCATTCACATGATT+TGG + chr5_4:19355058-19355077 None:intergenic 35.0%
ACATCATGATCTGGACTTAT+GGG + chr5_4:19355263-19355282 None:intergenic 35.0%
TACATCATGATCTGGACTTA+TGG + chr5_4:19355264-19355283 None:intergenic 35.0%
! ATCAGCAGCAATTGATAGTA+GGG + chr5_4:19355350-19355369 None:intergenic 35.0%
! TATCAGCAGCAATTGATAGT+AGG + chr5_4:19355351-19355370 None:intergenic 35.0%
GGACTGTTTCAATTTCTACT+CGG - chr5_4:19355434-19355453 Msa0842330:intron 35.0%
!! CGGCAAAAGCGTTAAAATAA+AGG - chr5_4:19355454-19355473 Msa0842330:intron 35.0%
GGAGAATAATTGTAGAGACT+AGG + chr5_4:19355625-19355644 None:intergenic 35.0%
!! TGTTAATTTGTCGTGAGTCT+AGG + chr5_4:19355646-19355665 None:intergenic 35.0%
AACGTTCATAAAGCCTTCAA+CGG + chr5_4:19355747-19355766 None:intergenic 35.0%
TCTAGGGATAGATGATTGTT+AGG + chr5_4:19355786-19355805 None:intergenic 35.0%
CTTTGTACAGGATTACGATT+TGG + chr5_4:19356252-19356271 None:intergenic 35.0%
!! TATATGAGGTAGCTTTGTAC+AGG + chr5_4:19356264-19356283 None:intergenic 35.0%
!!! CTCCACTCATTGTTGATTTT+AGG - chr5_4:19356310-19356329 Msa0842330:intron 35.0%
GACCTAAAATCAACAATGAG+TGG + chr5_4:19356315-19356334 None:intergenic 35.0%
AGCTAGAAAATACGTGACAT+AGG - chr5_4:19356335-19356354 Msa0842330:intron 35.0%
AAGGATGTGTAATTCTTAGG+TGG + chr5_4:19356394-19356413 None:intergenic 35.0%
TGTCTACGAATATACTTGGT+GGG + chr5_4:19356498-19356517 None:intergenic 35.0%
ATGTCTACGAATATACTTGG+TGG + chr5_4:19356499-19356518 None:intergenic 35.0%
AGTACATGTAGCGAATTGAT+GGG - chr5_4:19356794-19356813 Msa0842330:intron 35.0%
TACAAACAGAAGCCATTACA+AGG + chr5_4:19356835-19356854 None:intergenic 35.0%
TGATGTGACCTTAACATTTG+AGG + chr5_4:19356858-19356877 None:intergenic 35.0%
ATGACGGTAATGCAAAATGA+TGG + chr5_4:19356971-19356990 None:intergenic 35.0%
! TTTTGCATTACCGTCATAGT+AGG - chr5_4:19356974-19356993 Msa0842330:intron 35.0%
AAATGAAGGTAGAACTGACA+TGG + chr5_4:19357053-19357072 None:intergenic 35.0%
CCCAAAGATCAAAACAAACT+TGG + chr5_4:19357243-19357262 None:intergenic 35.0%
TTCTTCTTTCCAAGGTTAGT+TGG - chr5_4:19357292-19357311 Msa0842330:intron 35.0%
TGTTCTCATTGTTGTAGCAT+TGG + chr5_4:19357376-19357395 None:intergenic 35.0%
AACAATGAGAACAAAAGCCT+GGG - chr5_4:19357383-19357402 Msa0842330:intron 35.0%
!! CCTCTTGCTATTGAATATGA+GGG + chr5_4:19357412-19357431 None:intergenic 35.0%
CCTCATATTCAATAGCAAGA+GGG - chr5_4:19357410-19357429 Msa0842330:intron 35.0%
!!! GACTATTTTTTACGAGGTGA+TGG + chr5_4:19357458-19357477 None:intergenic 35.0%
GTGACATTATCGATCAGTAA+CGG - chr5_4:19357535-19357554 Msa0842330:intron 35.0%
AGAACACTGTATGAAATTGC+GGG + chr5_4:19357574-19357593 None:intergenic 35.0%
GAGAACACTGTATGAAATTG+CGG + chr5_4:19357575-19357594 None:intergenic 35.0%
!! TCGACTATTTGAATGGACTA+AGG + chr5_4:19357680-19357699 None:intergenic 35.0%
CCATATCTTCTGCAATTTAG+CGG - chr5_4:19357825-19357844 Msa0842330:intron 35.0%
ACTTCTGCAAGATTAACCTA+CGG + chr5_4:19357903-19357922 None:intergenic 35.0%
TGATTATGCATCTCTTGTGT+TGG - chr5_4:19353829-19353848 Msa0842330:intron 35.0%
AAAGCGATAAGTAAACGAGT+AGG + chr5_4:19358430-19358449 None:intergenic 35.0%
! ACTCGTTTACTTATCGCTTT+TGG - chr5_4:19358430-19358449 Msa0842330:intron 35.0%
!! CTCGTTTACTTATCGCTTTT+GGG - chr5_4:19358431-19358450 Msa0842330:intron 35.0%
TGAAAATGTGGTTGTCCATT+TGG + chr5_4:19358877-19358896 None:intergenic 35.0%
! CACTTTTCTGTGTGAAAATG+TGG + chr5_4:19358889-19358908 None:intergenic 35.0%
! TCACACAGAAAAGTGTGTAT+TGG - chr5_4:19358894-19358913 Msa0842330:intron 35.0%
CAAACAAACAGAACATACCA+AGG - chr5_4:19359166-19359185 Msa0842330:intron 35.0%
CAATAGAGATTAAAAGTCGG+GGG + chr5_4:19359217-19359236 None:intergenic 35.0%
GCATAAAGCTGAGAAAGATA+AGG + chr5_4:19359528-19359547 None:intergenic 35.0%
TTTGAATGAAGAACCTTGTC+CGG + chr5_4:19359586-19359605 None:intergenic 35.0%
TTATACTTCTCTCTTGCGTT+TGG + chr5_4:19359646-19359665 None:intergenic 35.0%
TTATAATGATGCAGAAGGTG+AGG - chr5_4:19359669-19359688 Msa0842330:intron 35.0%
GTAGAGTTTGAGAAGTTTCA+CGG - chr5_4:19359610-19359629 Msa0842330:intron 35.0%
TTATAATGATGCAGAAGGTG+AGG - chr5_4:19359669-19359688 Msa0842330:intron 35.0%
GTAGAGTTTGAGAAGTTTCA+CGG - chr5_4:19359610-19359629 Msa0842330:intron 35.0%
TTATAATGATGCAGAAGGTG+AGG - chr5_4:19359669-19359688 Msa0842330:intron 35.0%
GTAGAGTTTGAGAAGTTTCA+CGG - chr5_4:19359610-19359629 Msa0842330:intron 35.0%
TTATAATGATGCAGAAGGTG+AGG - chr5_4:19359669-19359688 Msa0842330:intron 35.0%
GTAGAGTTTGAGAAGTTTCA+CGG - chr5_4:19359610-19359629 Msa0842330:intron 35.0%
TTATAATGATGCAGAAGGTG+AGG - chr5_4:19359669-19359688 Msa0842330:intron 35.0%
GTAGAGTTTGAGAAGTTTCA+CGG - chr5_4:19359610-19359629 Msa0842330:intron 35.0%
TTATAATGATGCAGAAGGTG+AGG - chr5_4:19359669-19359688 Msa0842330:intron 35.0%
TCTGGTAAAAACGACATCTT+AGG + chr5_4:19360660-19360679 None:intergenic 35.0%
CTCGTGTTAAAAAGATGATG+AGG - chr5_4:19360772-19360791 Msa0842330:intron 35.0%
! TCAGTTCGTAACATCTGTTT+TGG - chr5_4:19360872-19360891 Msa0842330:intron 35.0%
! CAGTTCGTAACATCTGTTTT+GGG - chr5_4:19360873-19360892 Msa0842330:intron 35.0%
!! TGTTTTGGGTAACAATGTTG+TGG - chr5_4:19360887-19360906 Msa0842330:intron 35.0%
GGTAAGGTCAGTAAACTTAA+TGG - chr5_4:19360957-19360976 Msa0842330:intron 35.0%
AAGGTCAGTAAACTTAATGG+TGG - chr5_4:19360960-19360979 Msa0842330:intron 35.0%
AGGTCAGTAAACTTAATGGT+GGG - chr5_4:19360961-19360980 Msa0842330:intron 35.0%
GTCATGTAGATACTACTTCT+TGG - chr5_4:19361132-19361151 Msa0842330:intron 35.0%
!! ATGTTTTAAATTGCGGGAGG+TGG - chr5_4:19352796-19352815 Msa0842330:three_prime_UTR 40.0%
!!! GTACCAGTTTTGGATATCAG+AGG + chr5_4:19353340-19353359 None:intergenic 40.0%
! TATGCATGTGGTACCAGTTT+TGG + chr5_4:19353350-19353369 None:intergenic 40.0%
!! TGATGTGCTATTTGAGGATG+TGG - chr5_4:19353542-19353561 Msa0842330:three_prime_UTR 40.0%
GATATATTCTCACCCTCTAG+TGG - chr5_4:19353851-19353870 Msa0842330:intron 40.0%
!! TTTTAGAGATTGGCAGGCAT+AGG + chr5_4:19354259-19354278 None:intergenic 40.0%
AAATATATACAGAAGGGGGG+GGG - chr5_4:19354297-19354316 Msa0842330:CDS 40.0%
!! TGTTCTTTTTCTGAGGGTCT+TGG + chr5_4:19354330-19354349 None:intergenic 40.0%
GGATATGGGACATGTGATTA+AGG + chr5_4:19354469-19354488 None:intergenic 40.0%
! ACAGATAAGTTGGCGGATAT+GGG + chr5_4:19354483-19354502 None:intergenic 40.0%
! TACAGATAAGTTGGCGGATA+TGG + chr5_4:19354484-19354503 None:intergenic 40.0%
ATAGATGGCATAACTCTCAG+GGG + chr5_4:19354557-19354576 None:intergenic 40.0%
GAATAGATGGCATAACTCTC+AGG + chr5_4:19354559-19354578 None:intergenic 40.0%
!! CATCTATTCTGAAGCAACCA+CGG - chr5_4:19354570-19354589 Msa0842330:CDS 40.0%
! CGAATTCTTCTTTAGTTCCG+TGG + chr5_4:19354590-19354609 None:intergenic 40.0%
! AAAGACCATCAAAGCACTAG+TGG - chr5_4:19354611-19354630 Msa0842330:intron 40.0%
TGATTCCACTAGTGCTTTGA+TGG + chr5_4:19354619-19354638 None:intergenic 40.0%
! TATTCTTGCTATGGAGCATG+CGG + chr5_4:19354676-19354695 None:intergenic 40.0%
! TAAAAGCATAGATCTCCGCA+TGG - chr5_4:19354694-19354713 Msa0842330:intron 40.0%
TTCAGTTATTGGAGGGTTAG+CGG + chr5_4:19354799-19354818 None:intergenic 40.0%
CAGATGGTTCAGTTATTGGA+GGG + chr5_4:19354806-19354825 None:intergenic 40.0%
ACAGATGGTTCAGTTATTGG+AGG + chr5_4:19354807-19354826 None:intergenic 40.0%
ATTAACTTTCAACCAGGGAG+AGG - chr5_4:19354827-19354846 Msa0842330:intron 40.0%
TCAAGAAAGGGAGAATCAGA+TGG - chr5_4:19354918-19354937 Msa0842330:intron 40.0%
! AGAGTGAATGCGCACTTTTA+CGG - chr5_4:19354983-19355002 Msa0842330:intron 40.0%
CATGTGAATGGTATGGATGA+TGG - chr5_4:19355061-19355080 Msa0842330:intron 40.0%
AAGAATCATTGGGAAGATGG+AGG - chr5_4:19355103-19355122 Msa0842330:intron 40.0%
CATTATAAGACCCGTGCAAA+GGG + chr5_4:19355136-19355155 None:intergenic 40.0%
! TTTGCACGGGTCTTATAATG+CGG - chr5_4:19355136-19355155 Msa0842330:intron 40.0%
AGAAATTGAAACAGTCCCTG+TGG + chr5_4:19355431-19355450 None:intergenic 40.0%
! AGAAGTGTGTTCTGAGTCAA+GGG + chr5_4:19355686-19355705 None:intergenic 40.0%
! TAGAAGTGTGTTCTGAGTCA+AGG + chr5_4:19355687-19355706 None:intergenic 40.0%
! TAATCTAACGGGTCAGTCTA+GGG + chr5_4:19355802-19355821 None:intergenic 40.0%
! TTAATCTAACGGGTCAGTCT+AGG + chr5_4:19355803-19355822 None:intergenic 40.0%
ACTGACCCTAGCTATTGAAT+TGG + chr5_4:19355841-19355860 None:intergenic 40.0%
!!! AGCCAATTCACGTTTTGGAA+GGG + chr5_4:19356205-19356224 None:intergenic 40.0%
!! TAGCCAATTCACGTTTTGGA+AGG + chr5_4:19356206-19356225 None:intergenic 40.0%
! GTACTAGCCAATTCACGTTT+TGG + chr5_4:19356210-19356229 None:intergenic 40.0%
GAGAAGGAATATGTAGCACA+AGG + chr5_4:19356469-19356488 None:intergenic 40.0%
TGATCTAGATAATGAGCACG+AGG + chr5_4:19356738-19356757 None:intergenic 40.0%
CATCAATTCGCTACATGTAC+TGG + chr5_4:19356795-19356814 None:intergenic 40.0%
CAGTACATGTAGCGAATTGA+TGG - chr5_4:19356793-19356812 Msa0842330:intron 40.0%
AACAGAAGCCATTACAAGGA+AGG + chr5_4:19356831-19356850 None:intergenic 40.0%
CAAAATGATGGCACTAACCA+TGG + chr5_4:19356896-19356915 None:intergenic 40.0%
AAATGATGGCAGAACTGACA+TGG + chr5_4:19356957-19356976 None:intergenic 40.0%
ACACACAAAGCCTACTATGA+CGG + chr5_4:19356987-19357006 None:intergenic 40.0%
TGTGATTCATGTTGCTACGT+TGG - chr5_4:19357004-19357023 Msa0842330:intron 40.0%
ATGACGTCACTGCAAAATGA+AGG + chr5_4:19357067-19357086 None:intergenic 40.0%
! TTTTGCAGTGACGTCATAGT+AGG - chr5_4:19357070-19357089 Msa0842330:intron 40.0%
TTGGAAATCAAAGGATAGCC+CGG + chr5_4:19357224-19357243 None:intergenic 40.0%
! TTTGATCTTTGGGAGTGTAC+CGG - chr5_4:19357250-19357269 Msa0842330:intron 40.0%
CAACAATGAGAACAAAAGCC+TGG - chr5_4:19357382-19357401 Msa0842330:intron 40.0%
CCCTCATATTCAATAGCAAG+AGG - chr5_4:19357409-19357428 Msa0842330:intron 40.0%
!! CCCTCTTGCTATTGAATATG+AGG + chr5_4:19357413-19357432 None:intergenic 40.0%
! TGCACGGATACTTGTTGATT+TGG + chr5_4:19357491-19357510 None:intergenic 40.0%
TACTGATCGATAATGTCACG+AGG + chr5_4:19357534-19357553 None:intergenic 40.0%
AACACTGTATGAAATTGCGG+GGG + chr5_4:19357572-19357591 None:intergenic 40.0%
GAACACTGTATGAAATTGCG+GGG + chr5_4:19357573-19357592 None:intergenic 40.0%
CTCTCCATCTAATACTCTTG+CGG - chr5_4:19357592-19357611 Msa0842330:intron 40.0%
TCTCCATCTAATACTCTTGC+GGG - chr5_4:19357593-19357612 Msa0842330:intron 40.0%
!! GCAAGTATGGATTAGGCTTT+GGG + chr5_4:19357623-19357642 None:intergenic 40.0%
! TGGTACAGTGAGTTTGAAAC+CGG + chr5_4:19357710-19357729 None:intergenic 40.0%
TATGGAAAGTTAAAGGCCCA+TGG + chr5_4:19357810-19357829 None:intergenic 40.0%
CCGCTAAATTGCAGAAGATA+TGG + chr5_4:19357828-19357847 None:intergenic 40.0%
GTGACATCTTTCGTTGCATA+AGG - chr5_4:19357847-19357866 Msa0842330:intron 40.0%
!! GGACGTTTGGTCTTAAACAA+AGG + chr5_4:19357880-19357899 None:intergenic 40.0%
TTCTGCAAGATTAACCTACG+GGG + chr5_4:19357901-19357920 None:intergenic 40.0%
CTTCTGCAAGATTAACCTAC+GGG + chr5_4:19357902-19357921 None:intergenic 40.0%
AGACAGATAGTGTTTCTCCA+CGG - chr5_4:19357956-19357975 Msa0842330:intron 40.0%
!!! ATTTTTTGCCAAGGTCGGAA+TGG - chr5_4:19358086-19358105 Msa0842330:intron 40.0%
GATATATTCTCACCCTCTAG+TGG - chr5_4:19353851-19353870 Msa0842330:intron 40.0%
AAGATCTGATCTGTGACACT+AGG - chr5_4:19358470-19358489 Msa0842330:intron 40.0%
AGATCTGATCTGTGACACTA+GGG - chr5_4:19358471-19358490 Msa0842330:intron 40.0%
ATGGAGTAAGTATGTGGTGT+AGG + chr5_4:19358809-19358828 None:intergenic 40.0%
! ACGTGGCAATTGGATTTTCA+AGG - chr5_4:19359103-19359122 Msa0842330:intron 40.0%
! CGTGGCAATTGGATTTTCAA+GGG - chr5_4:19359104-19359123 Msa0842330:intron 40.0%
! CTTGTTTCTTCATTGTGGTG+TGG + chr5_4:19359501-19359520 None:intergenic 40.0%
CACCACAATGAAGAAACAAG+TGG - chr5_4:19359501-19359520 Msa0842330:intron 40.0%
! GTCCACTTGTTTCTTCATTG+TGG + chr5_4:19359506-19359525 None:intergenic 40.0%
TTATAATGACGCAGAAGGTG+AGG - chr5_4:19360533-19360552 Msa0842330:intron 40.0%
! TCTCTCTGAAAAATGCACCA+GGG + chr5_4:19360584-19360603 None:intergenic 40.0%
! TTCTCTCTGAAAAATGCACC+AGG + chr5_4:19360585-19360604 None:intergenic 40.0%
ACAATGTGTCAAGTCCACAA+AGG - chr5_4:19360842-19360861 Msa0842330:intron 40.0%
TGTCAAGTCCACAAAGGAAA+TGG - chr5_4:19360848-19360867 Msa0842330:intron 40.0%
GAACTGAACCATTTCCTTTG+TGG + chr5_4:19360859-19360878 None:intergenic 40.0%
ACTTGATATAGACGCACCAT+GGG + chr5_4:19361059-19361078 None:intergenic 40.0%
AACTTGATATAGACGCACCA+TGG + chr5_4:19361060-19361079 None:intergenic 40.0%
CATGACATATGGCTATAGCT+TGG + chr5_4:19361118-19361137 None:intergenic 40.0%
! GAATGAGTTTTCTTGGGCTA+AGG - chr5_4:19361229-19361248 Msa0842330:intron 40.0%
!! AGGTGGTTCTAGATGATAGC+AGG - chr5_4:19352813-19352832 Msa0842330:three_prime_UTR 45.0%
!! AACTGTGTCGGCTATAACAG+TGG + chr5_4:19352888-19352907 None:intergenic 45.0%
ATATTCTCACCCTCTAGTGG+CGG - chr5_4:19353854-19353873 Msa0842330:intron 45.0%
! AATCTACACCACAAGGGTGT+AGG + chr5_4:19353888-19353907 None:intergenic 45.0%
CCTGCAAATCTACACCACAA+GGG + chr5_4:19353894-19353913 None:intergenic 45.0%
TCCTGCAAATCTACACCACA+AGG + chr5_4:19353895-19353914 None:intergenic 45.0%
AAGAAGATGTGTGACACCCT+TGG - chr5_4:19354138-19354157 Msa0842330:CDS 45.0%
AATATATACAGAAGGGGGGG+GGG - chr5_4:19354298-19354317 Msa0842330:CDS 45.0%
AAATCCATATGCAACCCAGC+CGG - chr5_4:19354420-19354439 Msa0842330:intron 45.0%
!! TGTTTGGTTTGACACGCTTC+CGG + chr5_4:19354442-19354461 None:intergenic 45.0%
CGTGGTTGCTTCAGAATAGA+TGG + chr5_4:19354572-19354591 None:intergenic 45.0%
! TCTTACCTCGGTTTTCCATG+CGG + chr5_4:19354712-19354731 None:intergenic 45.0%
! GGCGCCTTTTCTTGTAACAT+TGG + chr5_4:19354735-19354754 None:intergenic 45.0%
GATTCCTTAGGCACATACCT+CGG + chr5_4:19354756-19354775 None:intergenic 45.0%
CACTCTCTGATTGCAATGTC+TGG + chr5_4:19354969-19354988 None:intergenic 45.0%
AATCATTGGGAAGATGGAGG+AGG - chr5_4:19355106-19355125 Msa0842330:intron 45.0%
GCATTATAAGACCCGTGCAA+AGG + chr5_4:19355137-19355156 None:intergenic 45.0%
GACAAACGTATCGCTGAAGA+AGG + chr5_4:19355223-19355242 None:intergenic 45.0%
TGTGTTTCCATCTGAGCAGT+AGG - chr5_4:19355298-19355317 Msa0842330:intron 45.0%
TCAGATACCTACTGCTCAGA+TGG + chr5_4:19355308-19355327 None:intergenic 45.0%
CTACAACACCCTAATCCCTT+AGG - chr5_4:19355710-19355729 Msa0842330:intron 45.0%
CGAACTCACCTAAGGGATTA+GGG + chr5_4:19355721-19355740 None:intergenic 45.0%
ACGAACTCACCTAAGGGATT+AGG + chr5_4:19355722-19355741 None:intergenic 45.0%
ACGGTTACGAACTCACCTAA+GGG + chr5_4:19355728-19355747 None:intergenic 45.0%
AACGGTTACGAACTCACCTA+AGG + chr5_4:19355729-19355748 None:intergenic 45.0%
CACGCAACACGAGATAAAGA+GGG + chr5_4:19356169-19356188 None:intergenic 45.0%
TCACGCAACACGAGATAAAG+AGG + chr5_4:19356170-19356189 None:intergenic 45.0%
TCCCCTTCCAAAACGTGAAT+TGG - chr5_4:19356200-19356219 Msa0842330:intron 45.0%
!!! GCCAATTCACGTTTTGGAAG+GGG + chr5_4:19356204-19356223 None:intergenic 45.0%
GTGAATTGGCTAGTACTGTG+CGG - chr5_4:19356214-19356233 Msa0842330:intron 45.0%
! ACTTGGTGGGCAATTTGAGA+AGG + chr5_4:19356485-19356504 None:intergenic 45.0%
ACTGTCATCAGCTGCAACTT+CGG - chr5_4:19356676-19356695 Msa0842330:intron 45.0%
CTCTGATGATCAAACTCACG+TGG + chr5_4:19356762-19356781 None:intergenic 45.0%
CACGTGAGTTTGATCATCAG+AGG - chr5_4:19356760-19356779 Msa0842330:intron 45.0%
ATGGCAGATGTCATGACTGA+GGG + chr5_4:19356938-19356957 None:intergenic 45.0%
AGCAGTAGTCTCTATCTGCA+AGG - chr5_4:19357126-19357145 Msa0842330:intron 45.0%
GTAGTCTCTATCTGCAAGGT+AGG - chr5_4:19357130-19357149 Msa0842330:intron 45.0%
ATCTGTGGAGAACAATCAGC+AGG + chr5_4:19357173-19357192 None:intergenic 45.0%
TTGGAAGAACCAATTCCCTC+CGG - chr5_4:19357202-19357221 Msa0842330:intron 45.0%
AAATCAAAGGATAGCCCGGA+GGG + chr5_4:19357220-19357239 None:intergenic 45.0%
!! TGTTGATAACGGAAAGCAGC+CGG + chr5_4:19357272-19357291 None:intergenic 45.0%
ATTGAGCAGCCAACTAACCT+TGG + chr5_4:19357304-19357323 None:intergenic 45.0%
ATTGAATATGAGGGACTCCC+AGG + chr5_4:19357403-19357422 None:intergenic 45.0%
TCGATAATGTCACGAGGAAC+AGG + chr5_4:19357528-19357547 None:intergenic 45.0%
TATGAAATTGCGGGGGAGAT+AGG + chr5_4:19357565-19357584 None:intergenic 45.0%
!! ACTCCCGCAAGAGTATTAGA+TGG + chr5_4:19357599-19357618 None:intergenic 45.0%
!! CGCAAGTATGGATTAGGCTT+TGG + chr5_4:19357624-19357643 None:intergenic 45.0%
TTGCGTGTGCGTCTATCTTT+GGG - chr5_4:19357639-19357658 Msa0842330:intron 45.0%
GGCTGCTTCGACTATTTGAA+TGG + chr5_4:19357687-19357706 None:intergenic 45.0%
! GTACAGTGAGTTTGAAACCG+GGG + chr5_4:19357708-19357727 None:intergenic 45.0%
! GGTACAGTGAGTTTGAAACC+GGG + chr5_4:19357709-19357728 None:intergenic 45.0%
ATGCTCACTGTTTATGCAGC+TGG + chr5_4:19357730-19357749 None:intergenic 45.0%
TCTCTTCTACTGCTTACTCC+CGG + chr5_4:19357933-19357952 None:intergenic 45.0%
! AGTGTTTCTCCACGGATTGA+AGG - chr5_4:19357964-19357983 Msa0842330:intron 45.0%
GGGAGAGGTTCAGAAATTGA+TGG - chr5_4:19357991-19358010 Msa0842330:intron 45.0%
ATATTCTCACCCTCTAGTGG+CGG - chr5_4:19353854-19353873 Msa0842330:intron 45.0%
CCTGCAAATCTACACCACAA+GGG + chr5_4:19353894-19353913 None:intergenic 45.0%
TCCTGCAAATCTACACCACA+AGG + chr5_4:19353895-19353914 None:intergenic 45.0%
TTAGTAGCAGTGAGTCTCTC+AGG - chr5_4:19358392-19358411 Msa0842330:intron 45.0%
TGAGTCTCTCAGGATGACTT+TGG - chr5_4:19358402-19358421 Msa0842330:intron 45.0%
TGATCTGTGACACTAGGGAT+TGG - chr5_4:19358476-19358495 Msa0842330:intron 45.0%
GATCTGTGACACTAGGGATT+GGG - chr5_4:19358477-19358496 Msa0842330:intron 45.0%
ATCTGTGACACTAGGGATTG+GGG - chr5_4:19358478-19358497 Msa0842330:intron 45.0%
CGTCGTTAGAGTCACAAGTT+GGG + chr5_4:19359086-19359105 None:intergenic 45.0%
ACGTCGTTAGAGTCACAAGT+TGG + chr5_4:19359087-19359106 None:intergenic 45.0%
AACTTGTGACTCTAACGACG+TGG - chr5_4:19359086-19359105 Msa0842330:intron 45.0%
! GATATGGGTTTAGTGATGGG+AGG + chr5_4:19359342-19359361 None:intergenic 45.0%
ATCTATCATTGCCGGAGATG+TGG - chr5_4:19359558-19359577 Msa0842330:intron 45.0%
TAATGATGCAGAAGGTGAGG+AGG - chr5_4:19359672-19359691 Msa0842330:intron 45.0%
AATGATGCAGAAGGTGAGGA+GGG - chr5_4:19359673-19359692 Msa0842330:intron 45.0%
TAATGATGCAGAAGGTGAGG+AGG - chr5_4:19359672-19359691 Msa0842330:intron 45.0%
AATGATGCAGAAGGTGAGGA+GGG - chr5_4:19359673-19359692 Msa0842330:intron 45.0%
TAATGATGCAGAAGGTGAGG+AGG - chr5_4:19359672-19359691 Msa0842330:intron 45.0%
AATGATGCAGAAGGTGAGGA+GGG - chr5_4:19359673-19359692 Msa0842330:intron 45.0%
TAATGATGCAGAAGGTGAGG+AGG - chr5_4:19359672-19359691 Msa0842330:intron 45.0%
AATGATGCAGAAGGTGAGGA+GGG - chr5_4:19359673-19359692 Msa0842330:intron 45.0%
TAATGATGCAGAAGGTGAGG+AGG - chr5_4:19359672-19359691 Msa0842330:intron 45.0%
AATGATGCAGAAGGTGAGGA+GGG - chr5_4:19359673-19359692 Msa0842330:intron 45.0%
TAATGATGCAGAAGGTGAGG+AGG - chr5_4:19359672-19359691 Msa0842330:intron 45.0%
AATGATGCAGAAGGTGAGGA+GGG - chr5_4:19359673-19359692 Msa0842330:intron 45.0%
AGGAGAGAAAGATGACAACG+AGG - chr5_4:19360553-19360572 Msa0842330:intron 45.0%
GGAGAGAAAGATGACAACGA+GGG - chr5_4:19360554-19360573 Msa0842330:intron 45.0%
! AAAAGGGGTGATGACGCAAA+TGG - chr5_4:19360614-19360633 Msa0842330:intron 45.0%
CGCAGAACTGAGAATGTGAA+CGG - chr5_4:19360912-19360931 Msa0842330:intron 45.0%
GCAGAACTGAGAATGTGAAC+GGG - chr5_4:19360913-19360932 Msa0842330:intron 45.0%
AACTGAGAATGTGAACGGGT+CGG - chr5_4:19360917-19360936 Msa0842330:intron 45.0%
GAAGACTGTGGTGATTGGTA+AGG - chr5_4:19360941-19360960 Msa0842330:intron 45.0%
TTACTGTCACTCAAACCCCA+TGG - chr5_4:19361040-19361059 Msa0842330:intron 45.0%
CTTGATATAGACGCACCATG+GGG + chr5_4:19361058-19361077 None:intergenic 45.0%
AAACCAAGAGTCTGAAAGGC+TGG + chr5_4:19361170-19361189 None:intergenic 45.0%
GCCTTTCAGACTCTTGGTTT+CGG - chr5_4:19361170-19361189 Msa0842330:intron 45.0%
TCCGAAACCAAGAGTCTGAA+AGG + chr5_4:19361174-19361193 None:intergenic 45.0%
TATTCTCACCCTCTAGTGGC+GGG - chr5_4:19353855-19353874 Msa0842330:intron 50.0%
CCCTTGTGGTGTAGATTTGC+AGG - chr5_4:19353891-19353910 Msa0842330:CDS 50.0%
AGAGATTGGCAGGCATAGGA+TGG + chr5_4:19354255-19354274 None:intergenic 50.0%
!! TGTTACAAGAAAAGGCGCCG+AGG - chr5_4:19354736-19354755 Msa0842330:intron 50.0%
! GGCTTGCGGCGGAATTTTTA+GGG + chr5_4:19354778-19354797 None:intergenic 50.0%
AACTTTCAACCAGGGAGAGG+AGG - chr5_4:19354830-19354849 Msa0842330:intron 50.0%
ACTTTCAACCAGGGAGAGGA+GGG - chr5_4:19354831-19354850 Msa0842330:intron 50.0%
TATAAGACCCGTGCAAAGGG+TGG + chr5_4:19355133-19355152 None:intergenic 50.0%
GGTGAGTTCGTAACCGTTGA+AGG - chr5_4:19355731-19355750 Msa0842330:intron 50.0%
CGGCGACATCGAAGTTCTAT+CGG + chr5_4:19356084-19356103 None:intergenic 50.0%
CGATAGAACTTCGATGTCGC+CGG - chr5_4:19356082-19356101 Msa0842330:intron 50.0%
AAGATACCGAGAGCAACGTC+CGG + chr5_4:19356104-19356123 None:intergenic 50.0%
AAGAGGGAGACGAAGCACAT+GGG + chr5_4:19356153-19356172 None:intergenic 50.0%
AAAGAGGGAGACGAAGCACA+TGG + chr5_4:19356154-19356173 None:intergenic 50.0%
CCATTACAAGGAAGGCAGAC+TGG + chr5_4:19356823-19356842 None:intergenic 50.0%
CCAGTCTGCCTTCCTTGTAA+TGG - chr5_4:19356820-19356839 Msa0842330:intron 50.0%
CATGGCAGATGTCATGACTG+AGG + chr5_4:19356939-19356958 None:intergenic 50.0%
GTAGGCTCTGTGTGTGATTC+AGG - chr5_4:19357088-19357107 Msa0842330:intron 50.0%
!! TGTGATTCAGGTTGCTGCGT+TGG - chr5_4:19357100-19357119 Msa0842330:intron 50.0%
CTCTATCTGCAAGGTAGGAG+AGG - chr5_4:19357135-19357154 Msa0842330:intron 50.0%
! TTCCAAGGCGTTTGCATCTG+TGG + chr5_4:19357188-19357207 None:intergenic 50.0%
! GGAGGGAATTGGTTCTTCCA+AGG + chr5_4:19357203-19357222 None:intergenic 50.0%
TGGAAGAACCAATTCCCTCC+GGG - chr5_4:19357203-19357222 Msa0842330:intron 50.0%
GAAATCAAAGGATAGCCCGG+AGG + chr5_4:19357221-19357240 None:intergenic 50.0%
GCTCAATCCTCTCCACACTT+CGG - chr5_4:19357317-19357336 Msa0842330:intron 50.0%
CTCAATCCTCTCCACACTTC+GGG - chr5_4:19357318-19357337 Msa0842330:intron 50.0%
TCAATCCTCTCCACACTTCG+GGG - chr5_4:19357319-19357338 Msa0842330:intron 50.0%
! GAGGTGATGGTTGAACGTGA+GGG + chr5_4:19357445-19357464 None:intergenic 50.0%
GGCAGTATGGGCATTATGCA+CGG + chr5_4:19357507-19357526 None:intergenic 50.0%
TCACGAGGAACAGGCAGTAT+GGG + chr5_4:19357519-19357538 None:intergenic 50.0%
CGCACACGCAAGTATGGATT+AGG + chr5_4:19357630-19357649 None:intergenic 50.0%
GATAGACGCACACGCAAGTA+TGG + chr5_4:19357636-19357655 None:intergenic 50.0%
CTTGCGTGTGCGTCTATCTT+TGG - chr5_4:19357638-19357657 Msa0842330:intron 50.0%
TCAAATAGTCGAAGCAGCCC+CGG - chr5_4:19357688-19357707 Msa0842330:intron 50.0%
CCATGGCATATGCTTTCCCT+CGG + chr5_4:19357793-19357812 None:intergenic 50.0%
! CGAGGGAAAGCATATGCCAT+GGG - chr5_4:19357791-19357810 Msa0842330:intron 50.0%
TTAAGACCAAACGTCCCCGT+AGG - chr5_4:19357884-19357903 Msa0842330:intron 50.0%
GATTAACCTACGGGGACGTT+TGG + chr5_4:19357893-19357912 None:intergenic 50.0%
TCTTCTACTGCTTACTCCCG+GGG + chr5_4:19357931-19357950 None:intergenic 50.0%
CTCTTCTACTGCTTACTCCC+GGG + chr5_4:19357932-19357951 None:intergenic 50.0%
! TCTCCACGGATTGAAGGCAA+CGG - chr5_4:19357970-19357989 Msa0842330:intron 50.0%
TCCTTTGCACAAGCTCTCTG+TGG + chr5_4:19358021-19358040 None:intergenic 50.0%
CAGAGAGCTTGTGCAAAGGA+TGG - chr5_4:19358021-19358040 Msa0842330:intron 50.0%
AATGGTACTGCCTGACGTCA+CGG - chr5_4:19358104-19358123 Msa0842330:intron 50.0%
TATTCTCACCCTCTAGTGGC+GGG - chr5_4:19353855-19353874 Msa0842330:intron 50.0%
! AATCTACACCACAAGGGTGC+AGG + chr5_4:19358356-19358375 None:intergenic 50.0%
CCCTTGTGGTGTAGATTTGC+AGG - chr5_4:19353891-19353910 Msa0842330:CDS 50.0%
GACTCTAACGACGTGGCAAT+TGG - chr5_4:19359093-19359112 Msa0842330:intron 50.0%
AGGTGAGGAGGGAAAGATGA+CGG - chr5_4:19359684-19359703 Msa0842330:intron 50.0%
CCTTGTCCTCATCTCCATGT+TGG + chr5_4:19359717-19359736 None:intergenic 50.0%
CCAACATGGAGATGAGGACA+AGG - chr5_4:19359714-19359733 Msa0842330:intron 50.0%
AGGTGAGGAGGGAAAGATGA+CGG - chr5_4:19359684-19359703 Msa0842330:intron 50.0%
CCTTGTCCTCATCTCCATGT+TGG + chr5_4:19359717-19359736 None:intergenic 50.0%
CCAACATGGAGATGAGGACA+AGG - chr5_4:19359714-19359733 Msa0842330:intron 50.0%
AGGTGAGGAGGGAAAGATGA+CGG - chr5_4:19359684-19359703 Msa0842330:intron 50.0%
CCTTGTCCTCATCTCCATGT+TGG + chr5_4:19359717-19359736 None:intergenic 50.0%
CCAACATGGAGATGAGGACA+AGG - chr5_4:19359714-19359733 Msa0842330:intron 50.0%
AGGTGAGGAGGGAAAGATGA+CGG - chr5_4:19359684-19359703 Msa0842330:intron 50.0%
CCTTGTCCTCATCTCCATGT+TGG + chr5_4:19359717-19359736 None:intergenic 50.0%
CCAACATGGAGATGAGGACA+AGG - chr5_4:19359714-19359733 Msa0842330:intron 50.0%
AGGTGAGGAGGGAAAGATGA+CGG - chr5_4:19359684-19359703 Msa0842330:intron 50.0%
CCTTGTCCTCATCTCCATGT+TGG + chr5_4:19359717-19359736 None:intergenic 50.0%
CCAACATGGAGATGAGGACA+AGG - chr5_4:19359714-19359733 Msa0842330:intron 50.0%
AGGTGAGGAGGGAAAGATGA+CGG - chr5_4:19359684-19359703 Msa0842330:intron 50.0%
CCTTGTCCTCATCTCCATGT+TGG + chr5_4:19359717-19359736 None:intergenic 50.0%
CCAACATGGAGATGAGGACA+AGG - chr5_4:19359714-19359733 Msa0842330:intron 50.0%
! CTCTGAAAAATGCACCAGGG+TGG + chr5_4:19360581-19360600 None:intergenic 50.0%
ACTGAGAATGTGAACGGGTC+GGG - chr5_4:19360918-19360937 Msa0842330:intron 50.0%
CATCCAGCCTTTCAGACTCT+TGG - chr5_4:19361164-19361183 Msa0842330:intron 50.0%
CACTATACACAGCAGAGAGC+TGG + chr5_4:19361346-19361365 None:intergenic 50.0%
ACAACACCGACAGCCCAACT+AGG - chr5_4:19354210-19354229 Msa0842330:CDS 55.0%
TGCCAACCTAGTTGGGCTGT+CGG + chr5_4:19354219-19354238 None:intergenic 55.0%
CATAGGATGGAGGTTTCCCG+GGG + chr5_4:19354242-19354261 None:intergenic 55.0%
GCATAGGATGGAGGTTTCCC+GGG + chr5_4:19354243-19354262 None:intergenic 55.0%
GGCATAGGATGGAGGTTTCC+CGG + chr5_4:19354244-19354263 None:intergenic 55.0%
GATTGGCAGGCATAGGATGG+AGG + chr5_4:19354252-19354271 None:intergenic 55.0%
TGGCATAACTCTCAGGGGCT+CGG + chr5_4:19354552-19354571 None:intergenic 55.0%
AGCATGCGGCACATCATGGA+TGG + chr5_4:19354662-19354681 None:intergenic 55.0%
ATGGAGCATGCGGCACATCA+TGG + chr5_4:19354666-19354685 None:intergenic 55.0%
GATCTCCGCATGGAAAACCG+AGG - chr5_4:19354704-19354723 Msa0842330:intron 55.0%
! CGGCTTGCGGCGGAATTTTT+AGG + chr5_4:19354779-19354798 None:intergenic 55.0%
! ATTGGAGGGTTAGCGGCTTG+CGG + chr5_4:19354792-19354811 None:intergenic 55.0%
! GCACGGGTCTTATAATGCGG+CGG - chr5_4:19355139-19355158 Msa0842330:intron 55.0%
ATTGGCTAGTACTGTGCGGC+TGG - chr5_4:19356218-19356237 Msa0842330:intron 55.0%
CTCCACAGATGCAAACGCCT+TGG - chr5_4:19357183-19357202 Msa0842330:intron 55.0%
AAGGATAGCCCGGAGGGAAT+TGG + chr5_4:19357214-19357233 None:intergenic 55.0%
CAATCCTCTCCACACTTCGG+GGG - chr5_4:19357320-19357339 Msa0842330:intron 55.0%
TCAGTTACACCCCCGAAGTG+TGG + chr5_4:19357332-19357351 None:intergenic 55.0%
! CGAGGTGATGGTTGAACGTG+AGG + chr5_4:19357446-19357465 None:intergenic 55.0%
GTCACGAGGAACAGGCAGTA+TGG + chr5_4:19357520-19357539 None:intergenic 55.0%
ATGCATAAAACCCCCGTCCG+AGG - chr5_4:19357773-19357792 Msa0842330:intron 55.0%
TGCATAAAACCCCCGTCCGA+GGG - chr5_4:19357774-19357793 Msa0842330:intron 55.0%
ATATGCTTTCCCTCGGACGG+GGG + chr5_4:19357786-19357805 None:intergenic 55.0%
CATATGCTTTCCCTCGGACG+GGG + chr5_4:19357787-19357806 None:intergenic 55.0%
GCATATGCTTTCCCTCGGAC+GGG + chr5_4:19357788-19357807 None:intergenic 55.0%
GGCATATGCTTTCCCTCGGA+CGG + chr5_4:19357789-19357808 None:intergenic 55.0%
! CCGAGGGAAAGCATATGCCA+TGG - chr5_4:19357790-19357809 Msa0842330:intron 55.0%
TCTTGCAGAAGTCGACACCC+CGG - chr5_4:19357911-19357930 Msa0842330:intron 55.0%
! CTCCACGGATTGAAGGCAAC+GGG - chr5_4:19357971-19357990 Msa0842330:intron 55.0%
GCCACAGAGAGCTTGTGCAA+AGG - chr5_4:19358017-19358036 Msa0842330:intron 55.0%
! GGTTTTGCAGACTGCGCAGT+AGG - chr5_4:19358042-19358061 Msa0842330:intron 55.0%
GACTGCGCAGTAGGAGCAAT+CGG - chr5_4:19358051-19358070 Msa0842330:intron 55.0%
AGGCAGTACCATTCCGACCT+TGG + chr5_4:19358097-19358116 None:intergenic 55.0%
CATTGCCGGAGATGTGGATC+CGG - chr5_4:19359564-19359583 Msa0842330:intron 55.0%
CTTGTCCGGATCCACATCTC+CGG + chr5_4:19359572-19359591 None:intergenic 55.0%
! AGGAGGGAAAGATGACGGTG+AGG - chr5_4:19359689-19359708 Msa0842330:intron 55.0%
! GGAGGGAAAGATGACGGTGA+GGG - chr5_4:19359690-19359709 Msa0842330:intron 55.0%
ATGACGGTGAGGGTCCAACA+TGG - chr5_4:19359700-19359719 Msa0842330:intron 55.0%
GAGGGTCCAACATGGAGATG+AGG - chr5_4:19359708-19359727 Msa0842330:intron 55.0%
! AGGAGGGAAAGATGACGGTG+AGG - chr5_4:19359689-19359708 Msa0842330:intron 55.0%
! GGAGGGAAAGATGACGGTGA+GGG - chr5_4:19359690-19359709 Msa0842330:intron 55.0%
ATGACGGTGAGGGTCCAACA+TGG - chr5_4:19359700-19359719 Msa0842330:intron 55.0%
GAGGGTCCAACATGGAGATG+AGG - chr5_4:19359708-19359727 Msa0842330:intron 55.0%
! AGGAGGGAAAGATGACGGTG+AGG - chr5_4:19359689-19359708 Msa0842330:intron 55.0%
! GGAGGGAAAGATGACGGTGA+GGG - chr5_4:19359690-19359709 Msa0842330:intron 55.0%
ATGACGGTGAGGGTCCAACA+TGG - chr5_4:19359700-19359719 Msa0842330:intron 55.0%
GAGGGTCCAACATGGAGATG+AGG - chr5_4:19359708-19359727 Msa0842330:intron 55.0%
! AGGAGGGAAAGATGACGGTG+AGG - chr5_4:19359689-19359708 Msa0842330:intron 55.0%
! GGAGGGAAAGATGACGGTGA+GGG - chr5_4:19359690-19359709 Msa0842330:intron 55.0%
ATGACGGTGAGGGTCCAACA+TGG - chr5_4:19359700-19359719 Msa0842330:intron 55.0%
GAGGGTCCAACATGGAGATG+AGG - chr5_4:19359708-19359727 Msa0842330:intron 55.0%
! AGGAGGGAAAGATGACGGTG+AGG - chr5_4:19359689-19359708 Msa0842330:intron 55.0%
! GGAGGGAAAGATGACGGTGA+GGG - chr5_4:19359690-19359709 Msa0842330:intron 55.0%
ATGACGGTGAGGGTCCAACA+TGG - chr5_4:19359700-19359719 Msa0842330:intron 55.0%
GAGGGTCCAACATGGAGATG+AGG - chr5_4:19359708-19359727 Msa0842330:intron 55.0%
! AGGAGGGAAAGATGACGGTG+AGG - chr5_4:19359689-19359708 Msa0842330:intron 55.0%
! GGAGGGAAAGATGACGGTGA+GGG - chr5_4:19359690-19359709 Msa0842330:intron 55.0%
ATGACGGTGAGGGTCCAACA+TGG - chr5_4:19359700-19359719 Msa0842330:intron 55.0%
GAGGGTCCAACATGGAGATG+AGG - chr5_4:19359708-19359727 Msa0842330:intron 55.0%
! TGTGAAGATCGTGCTGCTCC+AGG - chr5_4:19360810-19360829 Msa0842330:intron 55.0%
CTGAGAATGTGAACGGGTCG+GGG - chr5_4:19360919-19360938 Msa0842330:intron 55.0%
TCGGGGAAGACTGTGGTGAT+TGG - chr5_4:19360936-19360955 Msa0842330:intron 55.0%
CAGACTCTTGGTTTCGGACC+AGG - chr5_4:19361176-19361195 Msa0842330:intron 55.0%
! TTTCGGACCAGGCCTTATCG+AGG - chr5_4:19361187-19361206 Msa0842330:intron 55.0%
! CCTTATCGAGGCGTGTCACT+GGG - chr5_4:19361199-19361218 Msa0842330:intron 55.0%
!! TCACCCTCTAGTGGCGGGTT+GGG - chr5_4:19353860-19353879 Msa0842330:intron 60.0%
CACCGACAGCCCAACTAGGT+TGG - chr5_4:19354214-19354233 Msa0842330:CDS 60.0%
GCTTCCGGCTGGGTTGCATA+TGG + chr5_4:19354427-19354446 None:intergenic 60.0%
GGTTTGACACGCTTCCGGCT+GGG + chr5_4:19354437-19354456 None:intergenic 60.0%
TGGTTTGACACGCTTCCGGC+TGG + chr5_4:19354438-19354457 None:intergenic 60.0%
GGAAATCTCCCTCCTCTCCC+TGG + chr5_4:19354842-19354861 None:intergenic 60.0%
GAGGAGGACCACCCTTTGCA+CGG - chr5_4:19355122-19355141 Msa0842330:intron 60.0%
AGGAGGACCACCCTTTGCAC+GGG - chr5_4:19355123-19355142 Msa0842330:intron 60.0%
ATGTCGCCGGACGTTGCTCT+CGG - chr5_4:19356095-19356114 Msa0842330:intron 60.0%
GGAGACGAAGCACATGGGAG+AGG + chr5_4:19356148-19356167 None:intergenic 60.0%
TACACCCCCGAAGTGTGGAG+AGG + chr5_4:19357327-19357346 None:intergenic 60.0%
CTTGCAGAAGTCGACACCCC+GGG - chr5_4:19357912-19357931 Msa0842330:intron 60.0%
CTCCCGTTGCCTTCAATCCG+TGG + chr5_4:19357976-19357995 None:intergenic 60.0%
CGGATTGAAGGCAACGGGAG+AGG - chr5_4:19357976-19357995 Msa0842330:intron 60.0%
!! TCACCCTCTAGTGGCGGGTT+GGG - chr5_4:19353860-19353879 Msa0842330:intron 60.0%
CGGAGATGTGGATCCGGACA+AGG - chr5_4:19359570-19359589 Msa0842330:intron 60.0%
ATGACAACGAGGGTCCACCC+TGG - chr5_4:19360564-19360583 Msa0842330:intron 60.0%
TGACACGCCTCGATAAGGCC+TGG + chr5_4:19361197-19361216 None:intergenic 60.0%
GCCTTATCGAGGCGTGTCAC+TGG - chr5_4:19361198-19361217 Msa0842330:intron 60.0%
CCCAGTGACACGCCTCGATA+AGG + chr5_4:19361202-19361221 None:intergenic 60.0%
!! CTCACCCTCTAGTGGCGGGT+TGG - chr5_4:19353859-19353878 Msa0842330:intron 65.0%
GTTGGGCGCCTACACCCTTG+TGG - chr5_4:19353877-19353896 Msa0842330:intron 65.0%
! GCCCAACTAGGTTGGCACCC+CGG - chr5_4:19354222-19354241 Msa0842330:CDS 65.0%
! CCCGGGGTGCCAACCTAGTT+GGG + chr5_4:19354226-19354245 None:intergenic 65.0%
! CCCAACTAGGTTGGCACCCC+GGG - chr5_4:19354223-19354242 Msa0842330:CDS 65.0%
! TCCCGGGGTGCCAACCTAGT+TGG + chr5_4:19354227-19354246 None:intergenic 65.0%
TACAGAAGGGGGGGGGGACT+AGG - chr5_4:19354304-19354323 Msa0842330:CDS 65.0%
CTCTCAGGGGCTCGGAGTTC+AGG + chr5_4:19354544-19354563 None:intergenic 65.0%
! GGCGCCGAGGTATGTGCCTA+AGG - chr5_4:19354749-19354768 Msa0842330:intron 65.0%
ACTGCCTGACGTCACGGTCG+CGG - chr5_4:19358110-19358129 Msa0842330:intron 65.0%
TCGCGGCTGTGATGGCAGGA+GGG - chr5_4:19358127-19358146 Msa0842330:intron 65.0%
!! CTCACCCTCTAGTGGCGGGT+TGG - chr5_4:19353859-19353878 Msa0842330:intron 65.0%
GAACGGGTCGGGGAAGACTG+TGG - chr5_4:19360929-19360948 Msa0842330:intron 65.0%
GCGCCCAACCCGCCACTAGA+GGG + chr5_4:19353866-19353885 None:intergenic 70.0%
! GGAGGGTTAGCGGCTTGCGG+CGG + chr5_4:19354789-19354808 None:intergenic 70.0%
ACAGCCGCGACCGTGACGTC+AGG + chr5_4:19358117-19358136 None:intergenic 70.0%
CGTCACGGTCGCGGCTGTGA+TGG - chr5_4:19358119-19358138 Msa0842330:intron 70.0%
ACGGTCGCGGCTGTGATGGC+AGG - chr5_4:19358123-19358142 Msa0842330:intron 70.0%
GTCGCGGCTGTGATGGCAGG+AGG - chr5_4:19358126-19358145 Msa0842330:intron 70.0%
CGCGGCTGTGATGGCAGGAG+GGG - chr5_4:19358128-19358147 Msa0842330:intron 70.0%
GCGCCCAACCCGCCACTAGA+GGG + chr5_4:19353866-19353885 None:intergenic 70.0%
GTTGGGCGCCTGCACCCTTG+TGG - chr5_4:19358345-19358364 Msa0842330:intron 70.0%
GGCGCCCAACCCGCCACTAG+AGG + chr5_4:19353867-19353886 None:intergenic 75.0%
AGGAGGGGCGAGCTCCGCCT+TGG - chr5_4:19358143-19358162 Msa0842330:intron 75.0%
GGCGCCCAACCCGCCACTAG+AGG + chr5_4:19353867-19353886 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 19352710 19361373 19352710 ID=Msa0842330;Name=Msa0842330
chr5_4 mRNA 19352710 19361373 19352710 ID=Msa0842330-mRNA-1;Parent=Msa0842330;Name=Msa0842330-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.83|0|0|6|964|197
chr5_4 exon 19352710 19353680 19352710 ID=Msa0842330-mRNA-1:exon:8087;Parent=Msa0842330-mRNA-1
chr5_4 exon 19353884 19354109 19353884 ID=Msa0842330-mRNA-1:exon:8086;Parent=Msa0842330-mRNA-1
chr5_4 exon 19354136 19354181 19354136 ID=Msa0842330-mRNA-1:exon:8085;Parent=Msa0842330-mRNA-1
chr5_4 exon 19354204 19354397 19354204 ID=Msa0842330-mRNA-1:exon:8084;Parent=Msa0842330-mRNA-1
chr5_4 exon 19354492 19354606 19354492 ID=Msa0842330-mRNA-1:exon:8083;Parent=Msa0842330-mRNA-1
chr5_4 exon 19361368 19361373 19361368 ID=Msa0842330-mRNA-1:exon:8082;Parent=Msa0842330-mRNA-1
chr5_4 CDS 19361368 19361373 19361368 ID=Msa0842330-mRNA-1:cds;Parent=Msa0842330-mRNA-1
chr5_4 CDS 19354492 19354606 19354492 ID=Msa0842330-mRNA-1:cds;Parent=Msa0842330-mRNA-1
chr5_4 CDS 19354204 19354397 19354204 ID=Msa0842330-mRNA-1:cds;Parent=Msa0842330-mRNA-1
chr5_4 CDS 19354136 19354181 19354136 ID=Msa0842330-mRNA-1:cds;Parent=Msa0842330-mRNA-1
chr5_4 CDS 19353884 19354109 19353884 ID=Msa0842330-mRNA-1:cds;Parent=Msa0842330-mRNA-1
chr5_4 CDS 19353674 19353680 19353674 ID=Msa0842330-mRNA-1:cds;Parent=Msa0842330-mRNA-1
chr5_4 three_prime_UTR 19352710 19353673 19352710 ID=Msa0842330-mRNA-1:three_prime_utr;Parent=Msa0842330-mRNA-1
Gene Sequence

>Msa0842330

ATGTATGAAACTATCGTTATTCACACACCACACCACAATGAAGAAACAAGTGGACCTTATCTTTCTCAGCTTTATGCTCTTTATCTCATCTATCATTGCCGGAGATGTGGATCCGGACAAGGTGAGGAGGGAAAGATGACGGTGAGGGTCCAACATGGAGATGAGGACAAGGTTCTTCATTCAAACTCAGTAGAGTTTGAGAAGTTTCACGGCAACTTTCAGCCAAACGCAAGAAAGAAGTATAAACATTATAATGATGCAGAAGGTGAGGAGGGAAAGATGACGGTGAGGGTCCAACATGGAGATGAGGACAAGAGTTTGAGAAGTTTCACGGCAACTTTCAGCCAAACGCAAGAAAGAAGTGAGGAGGGAAAGATGACGGTGAGGGTCCAACATGGAGATGAGGACAAGGTTCTTCATTCAAACTCAGTAGAGTTTGAGAAGTTTCACGGCAACTTTCAGCCAAACGCAAGAAAGAAGTATAAACATTATAATGATGCAGAAGGTGAGGAGGGAAAGATGACGGTGAGGGTCCAACATGGAGATGAGGACAAGGTTCTTCATTCAAACTCAGTAGAGTTTGAGAAAAGGTGA

Protein sequence

>Msa0842330

MYETIVIHTPHHNEETSGPYLSQLYALYLIYHCRRCGSGQGEEGKMTVRVQHGDEDKVLHSNSVEFEKFHGNFQPNARKKYKHYNDAEGEEGKMTVRVQHGDEDKSLRSFTATFSQTQERSEEGKMTVRVQHGDEDKVLHSNSVEFEKFHGNFQPNARKKYKHYNDAEGEEGKMTVRVQHGDEDKVLHSNSVEFEKR*