Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453040 | XP_003600057.1 | 94.483 | 435 | 22 | 1 | 1 | 435 | 1 | 433 | 0.0 | 855 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453040 | sp|Q9LJU7|PPA18_ARATH | 73.086 | 431 | 116 | 0 | 5 | 435 | 7 | 437 | 0.0 | 689 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453040 | G7IXK7 | 94.483 | 435 | 22 | 1 | 1 | 435 | 1 | 433 | 0.0 | 855 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0453040 | 0.801620 | 8.262991e-49 | -8.615850e-47 |
| Msa0017670 | Msa0453040 | 0.804405 | 2.194495e-49 | -8.615850e-47 |
| Msa0019900 | Msa0453040 | 0.815875 | 7.388895e-52 | -8.615850e-47 |
| Msa0025160 | Msa0453040 | 0.821005 | 5.080912e-53 | -8.615850e-47 |
| Msa0034120 | Msa0453040 | 0.801267 | 9.761463e-49 | -8.615850e-47 |
| Msa0050790 | Msa0453040 | 0.800649 | 1.305383e-48 | -8.615850e-47 |
| Msa0054690 | Msa0453040 | 0.816628 | 5.013192e-52 | -8.615850e-47 |
| Msa0098040 | Msa0453040 | 0.818732 | 1.680915e-52 | -8.615850e-47 |
| Msa0123340 | Msa0453040 | 0.810549 | 1.090646e-50 | -8.615850e-47 |
| Msa0125360 | Msa0453040 | 0.818074 | 2.370047e-52 | -8.615850e-47 |
| Msa0136650 | Msa0453040 | 0.836343 | 9.892063e-57 | -8.615850e-47 |
| Msa0152850 | Msa0453040 | 0.800968 | 1.123373e-48 | -8.615850e-47 |
| Msa0158860 | Msa0453040 | 0.833262 | 5.899532e-56 | -8.615850e-47 |
| Msa0174120 | Msa0453040 | 0.800927 | 1.145695e-48 | -8.615850e-47 |
| Msa0174450 | Msa0453040 | 0.819893 | 9.140923e-53 | -8.615850e-47 |
| Msa0177880 | Msa0453040 | 0.801305 | 9.586080e-49 | -8.615850e-47 |
| Msa0208140 | Msa0453040 | 0.812039 | 5.181577e-51 | -8.615850e-47 |
| Msa0225100 | Msa0453040 | 0.817797 | 2.736882e-52 | -8.615850e-47 |
| Msa0226310 | Msa0453040 | 0.825121 | 5.572284e-54 | -8.615850e-47 |
| Msa0364120 | Msa0453040 | 0.818913 | 1.529400e-52 | -8.615850e-47 |
| Msa0369790 | Msa0453040 | 0.802992 | 4.310979e-49 | -8.615850e-47 |
| Msa0375640 | Msa0453040 | 0.820206 | 7.752189e-53 | -8.615850e-47 |
| Msa0380620 | Msa0453040 | 0.836605 | 8.486825e-57 | -8.615850e-47 |
| Msa0400650 | Msa0453040 | 0.866719 | 2.321938e-65 | -8.615850e-47 |
| Msa0405680 | Msa0453040 | 0.805169 | 1.519840e-49 | -8.615850e-47 |
| Msa0417160 | Msa0453040 | 0.804164 | 2.463080e-49 | -8.615850e-47 |
| Msa0424140 | Msa0453040 | 0.805478 | 1.309141e-49 | -8.615850e-47 |
| Msa0424160 | Msa0453040 | 0.823661 | 1.228506e-53 | -8.615850e-47 |
| Msa0430260 | Msa0453040 | 0.840930 | 6.461336e-58 | -8.615850e-47 |
| Msa0453040 | Msa0464000 | 0.801623 | 8.251708e-49 | -8.615850e-47 |
| Msa0453040 | Msa0472950 | 0.840948 | 6.392838e-58 | -8.615850e-47 |
| Msa0453040 | Msa0479320 | 0.810174 | 1.313914e-50 | -8.615850e-47 |
| Msa0453040 | Msa0500380 | 0.826731 | 2.310075e-54 | -8.615850e-47 |
| Msa0453040 | Msa0509550 | 0.800634 | 1.314396e-48 | -8.615850e-47 |
| Msa0453040 | Msa0515800 | 0.819204 | 1.313152e-52 | -8.615850e-47 |
| Msa0453040 | Msa0528570 | 0.820546 | 6.478405e-53 | -8.615850e-47 |
| Msa0453040 | Msa0529030 | 0.809020 | 2.326026e-50 | -8.615850e-47 |
| Msa0453040 | Msa0548470 | 0.807549 | 4.787404e-50 | -8.615850e-47 |
| Msa0453040 | Msa0550050 | 0.816333 | 5.837036e-52 | -8.615850e-47 |
| Msa0453040 | Msa0557370 | 0.810295 | 1.237843e-50 | -8.615850e-47 |
| Msa0453040 | Msa0557460 | 0.812812 | 3.510745e-51 | -8.615850e-47 |
| Msa0453040 | Msa0570120 | 0.808084 | 3.685275e-50 | -8.615850e-47 |
| Msa0453040 | Msa0580370 | 0.805112 | 1.562449e-49 | -8.615850e-47 |
| Msa0453040 | Msa0587620 | 0.805453 | 1.325293e-49 | -8.615850e-47 |
| Msa0453040 | Msa0597270 | 0.811259 | 7.655725e-51 | -8.615850e-47 |
| Msa0453040 | Msa0605560 | 0.829485 | 5.014711e-55 | -8.615850e-47 |
| Msa0453040 | Msa0611210 | 0.825820 | 3.805647e-54 | -8.615850e-47 |
| Msa0453040 | Msa0626450 | 0.839708 | 1.348394e-57 | -8.615850e-47 |
| Msa0453040 | Msa0626490 | 0.835104 | 2.037462e-56 | -8.615850e-47 |
| Msa0453040 | Msa0644410 | 0.810863 | 9.330582e-51 | -8.615850e-47 |
| Msa0453040 | Msa0651550 | 0.819454 | 1.151893e-52 | -8.615850e-47 |
| Msa0453040 | Msa0657720 | 0.808817 | 2.570034e-50 | -8.615850e-47 |
| Msa0453040 | Msa0661150 | 0.806296 | 8.812096e-50 | -8.615850e-47 |
| Msa0453040 | Msa0664600 | 0.835182 | 1.947795e-56 | -8.615850e-47 |
| Msa0453040 | Msa0702790 | 0.808253 | 3.390878e-50 | -8.615850e-47 |
| Msa0453040 | Msa0738700 | 0.812254 | 4.650873e-51 | -8.615850e-47 |
| Msa0453040 | Msa0756490 | 0.832598 | 8.627603e-56 | -8.615850e-47 |
| Msa0453040 | Msa0783530 | 0.810976 | 8.818182e-51 | -8.615850e-47 |
| Msa0453040 | Msa0792370 | 0.801898 | 7.246644e-49 | -8.615850e-47 |
| Msa0453040 | Msa0795870 | 0.805885 | 1.075452e-49 | -8.615850e-47 |
| Msa0453040 | Msa0828950 | 0.808549 | 2.932945e-50 | -8.615850e-47 |
| Msa0453040 | Msa0829300 | 0.803697 | 3.080543e-49 | -8.615850e-47 |
| Msa0453040 | Msa0829330 | 0.808389 | 3.172216e-50 | -8.615850e-47 |
| Msa0453040 | Msa0833650 | 0.806000 | 1.017053e-49 | -8.615850e-47 |
| Msa0453040 | Msa0842330 | 0.800559 | 1.361810e-48 | -8.615850e-47 |
| Msa0453040 | Msa0851850 | 0.809763 | 1.610987e-50 | -8.615850e-47 |
| Msa0453040 | Msa0859290 | 0.807288 | 5.439940e-50 | -8.615850e-47 |
| Msa0453040 | Msa0894790 | 0.809390 | 1.938023e-50 | -8.615850e-47 |
| Msa0453040 | Msa0921590 | 0.808681 | 2.748824e-50 | -8.615850e-47 |
| Msa0453040 | Msa0967870 | 0.811165 | 8.024882e-51 | -8.615850e-47 |
| Msa0453040 | Msa0972680 | 0.816313 | 5.897949e-52 | -8.615850e-47 |
| Msa0453040 | Msa0980140 | 0.807527 | 4.838444e-50 | -8.615850e-47 |
| Msa0453040 | Msa1020480 | 0.800164 | 1.638897e-48 | -8.615850e-47 |
| Msa0453040 | Msa1021590 | 0.816537 | 5.253624e-52 | -8.615850e-47 |
| Msa0453040 | Msa1037950 | 0.822814 | 1.936361e-53 | -8.615850e-47 |
| Msa0453040 | Msa1042160 | 0.828293 | 9.745044e-55 | -8.615850e-47 |
| Msa0453040 | Msa1042190 | 0.835051 | 2.101861e-56 | -8.615850e-47 |
| Msa0453040 | Msa1044680 | 0.807923 | 3.986493e-50 | -8.615850e-47 |
| Msa0453040 | Msa1074370 | 0.801533 | 8.609690e-49 | -8.615850e-47 |
| Msa0453040 | Msa1132840 | 0.803005 | 4.284304e-49 | -8.615850e-47 |
| Msa0453040 | Msa1167470 | 0.828196 | 1.028372e-54 | -8.615850e-47 |
| Msa0453040 | Msa1174780 | 0.802264 | 6.093077e-49 | -8.615850e-47 |
| Msa0453040 | Msa1216110 | 0.833526 | 5.069710e-56 | -8.615850e-47 |
| Msa0453040 | Msa1316330 | 0.808243 | 3.408986e-50 | -8.615850e-47 |
| Msa0453040 | Msa1346560 | 0.808034 | 3.776504e-50 | -8.615850e-47 |
| Msa0453040 | Msa1359690 | 0.819677 | 1.024587e-52 | -8.615850e-47 |
| Msa0453040 | Msa1371910 | 0.821438 | 4.038390e-53 | -8.615850e-47 |
| Msa0453040 | Msa1405460 | 0.804210 | 2.409930e-49 | -8.615850e-47 |
| Msa0453040 | Msa1414170 | 0.809444 | 1.886851e-50 | -8.615850e-47 |
| Msa0453040 | Msa1415540 | 0.819697 | 1.013681e-52 | -8.615850e-47 |
| Msa0453040 | Msa1440960 | 0.839174 | 1.855221e-57 | -8.615850e-47 |
| Msa0247890 | Msa0453040 | 0.810518 | 1.107909e-50 | -8.615850e-47 |
| Msa0249860 | Msa0453040 | 0.807271 | 5.483707e-50 | -8.615850e-47 |
| Msa0251710 | Msa0453040 | 0.805825 | 1.106950e-49 | -8.615850e-47 |
| Msa0266180 | Msa0453040 | 0.802293 | 6.008875e-49 | -8.615850e-47 |
| Msa0275770 | Msa0453040 | 0.843792 | 1.126552e-58 | -8.615850e-47 |
| Msa0275820 | Msa0453040 | 0.840107 | 1.060932e-57 | -8.615850e-47 |
| Msa0287740 | Msa0453040 | 0.820987 | 5.129254e-53 | -8.615850e-47 |
| Msa0304570 | Msa0453040 | 0.842033 | 3.309600e-58 | -8.615850e-47 |
| Msa0304680 | Msa0453040 | 0.845862 | 3.116485e-59 | -8.615850e-47 |
| Msa0330520 | Msa0453040 | 0.804460 | 2.137082e-49 | -8.615850e-47 |
| Msa0334660 | Msa0453040 | 0.803064 | 4.165344e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453040 | MtrunA17_Chr3g0098721 | 94.483 | 435 | 22 | 1 | 1 | 435 | 1 | 433 | 0.0 | 855 |
| Msa0453040 | MtrunA17_Chr5g0443881 | 79.384 | 422 | 85 | 1 | 16 | 435 | 18 | 439 | 0.0 | 721 |
| Msa0453040 | MtrunA17_Chr7g0266131 | 59.179 | 414 | 166 | 3 | 19 | 430 | 29 | 441 | 0.0 | 533 |
| Msa0453040 | MtrunA17_Chr1g0178831 | 59.719 | 427 | 168 | 4 | 6 | 430 | 9 | 433 | 0.0 | 533 |
| Msa0453040 | MtrunA17_Chr7g0266151 | 59.466 | 412 | 162 | 4 | 10 | 418 | 13 | 422 | 1.93e-176 | 499 |
| Msa0453040 | MtrunA17_Chr4g0064541 | 43.269 | 416 | 207 | 8 | 45 | 434 | 55 | 467 | 2.98e-104 | 317 |
| Msa0453040 | MtrunA17_Chr4g0019091 | 42.651 | 415 | 204 | 11 | 31 | 412 | 35 | 448 | 3.94e-98 | 301 |
| Msa0453040 | MtrunA17_Chr6g0453731 | 37.630 | 481 | 206 | 9 | 43 | 432 | 69 | 546 | 1.03e-96 | 301 |
| Msa0453040 | MtrunA17_Chr3g0121411 | 39.083 | 458 | 186 | 8 | 45 | 412 | 71 | 525 | 4.82e-95 | 296 |
| Msa0453040 | MtrunA17_Chr7g0236041 | 38.428 | 458 | 189 | 8 | 45 | 412 | 70 | 524 | 8.98e-95 | 295 |
| Msa0453040 | MtrunA17_Chr1g0211041 | 41.014 | 434 | 220 | 12 | 13 | 412 | 19 | 450 | 1.40e-94 | 292 |
| Msa0453040 | MtrunA17_Chr3g0121431 | 38.950 | 457 | 190 | 9 | 45 | 413 | 126 | 581 | 3.47e-93 | 293 |
| Msa0453040 | MtrunA17_Chr4g0019071 | 47.387 | 287 | 132 | 6 | 145 | 412 | 39 | 325 | 1.38e-80 | 252 |
| Msa0453040 | MtrunA17_Chr4g0022251 | 28.084 | 381 | 210 | 10 | 58 | 381 | 231 | 604 | 9.99e-35 | 136 |
| Msa0453040 | MtrunA17_Chr1g0173511 | 29.942 | 344 | 182 | 13 | 58 | 349 | 94 | 430 | 2.05e-32 | 128 |
| Msa0453040 | MtrunA17_Chr3g0116051 | 25.293 | 427 | 252 | 13 | 56 | 421 | 192 | 612 | 2.52e-24 | 105 |
| Msa0453040 | MtrunA17_Chr4g0043001 | 26.506 | 415 | 227 | 13 | 45 | 384 | 144 | 555 | 5.59e-24 | 104 |
| Msa0453040 | MtrunA17_Chr3g0116091 | 24.578 | 415 | 221 | 12 | 58 | 421 | 35 | 408 | 1.83e-22 | 99.0 |
| Msa0453040 | MtrunA17_Chr4g0057551 | 25.068 | 367 | 226 | 9 | 101 | 421 | 253 | 616 | 3.43e-22 | 99.4 |
| Msa0453040 | MtrunA17_Chr4g0043021 | 25.943 | 424 | 230 | 14 | 39 | 384 | 138 | 555 | 4.88e-22 | 99.0 |
| Msa0453040 | MtrunA17_Chr5g0419621 | 24.747 | 396 | 239 | 12 | 76 | 421 | 222 | 608 | 1.51e-21 | 97.4 |
| Msa0453040 | MtrunA17_Chr8g0364481 | 26.016 | 369 | 220 | 12 | 101 | 421 | 238 | 601 | 4.85e-21 | 95.9 |
| Msa0453040 | MtrunA17_Chr4g0019081 | 34.694 | 147 | 80 | 7 | 15 | 147 | 26 | 170 | 1.00e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453040 | AT3G20500.1 | 73.086 | 431 | 116 | 0 | 5 | 435 | 7 | 437 | 0.0 | 689 |
| Msa0453040 | AT3G52820.1 | 60.599 | 401 | 154 | 3 | 17 | 415 | 20 | 418 | 0.0 | 519 |
| Msa0453040 | AT3G52810.1 | 55.378 | 437 | 186 | 3 | 1 | 429 | 1 | 436 | 5.49e-174 | 494 |
| Msa0453040 | AT3G52780.1 | 58.273 | 417 | 166 | 6 | 6 | 415 | 4 | 419 | 1.48e-173 | 493 |
| Msa0453040 | AT3G52780.2 | 56.886 | 334 | 136 | 6 | 6 | 332 | 4 | 336 | 3.63e-131 | 382 |
| Msa0453040 | AT5G34850.1 | 41.043 | 441 | 228 | 10 | 3 | 412 | 7 | 446 | 9.48e-102 | 311 |
| Msa0453040 | AT4G36350.1 | 40.583 | 446 | 228 | 13 | 2 | 412 | 5 | 448 | 9.77e-101 | 308 |
| Msa0453040 | AT1G56360.1 | 40.312 | 449 | 230 | 13 | 1 | 412 | 1 | 448 | 3.84e-98 | 302 |
| Msa0453040 | AT3G07130.1 | 40.618 | 421 | 177 | 5 | 65 | 413 | 97 | 516 | 1.73e-94 | 295 |
| Msa0453040 | AT2G27190.1 | 39.111 | 450 | 233 | 13 | 1 | 412 | 7 | 453 | 1.06e-90 | 283 |
| Msa0453040 | AT2G16430.2 | 39.503 | 443 | 233 | 13 | 3 | 412 | 12 | 452 | 2.01e-88 | 277 |
| Msa0453040 | AT2G18130.1 | 38.940 | 434 | 220 | 12 | 7 | 412 | 13 | 429 | 2.88e-88 | 275 |
| Msa0453040 | AT3G07130.2 | 37.665 | 454 | 177 | 6 | 65 | 413 | 97 | 549 | 1.24e-87 | 278 |
| Msa0453040 | AT4G13700.1 | 41.623 | 382 | 168 | 7 | 42 | 370 | 62 | 441 | 4.83e-86 | 270 |
| Msa0453040 | AT2G16430.1 | 42.025 | 326 | 165 | 8 | 111 | 412 | 7 | 332 | 5.92e-75 | 238 |
| Msa0453040 | AT2G32770.3 | 34.409 | 465 | 205 | 11 | 45 | 410 | 69 | 532 | 1.96e-70 | 232 |
| Msa0453040 | AT4G13700.2 | 39.296 | 341 | 152 | 7 | 42 | 329 | 62 | 400 | 1.14e-66 | 219 |
| Msa0453040 | AT3G46120.1 | 34.332 | 434 | 187 | 14 | 7 | 412 | 13 | 376 | 3.02e-64 | 212 |
| Msa0453040 | AT2G32770.2 | 35.422 | 367 | 161 | 6 | 95 | 386 | 62 | 427 | 1.79e-61 | 206 |
| Msa0453040 | AT2G32770.1 | 30.702 | 456 | 187 | 12 | 45 | 401 | 69 | 494 | 1.66e-53 | 187 |
| Msa0453040 | AT1G52940.1 | 37.719 | 228 | 124 | 9 | 45 | 255 | 15 | 241 | 2.69e-35 | 131 |
| Msa0453040 | AT5G50400.2 | 25.946 | 370 | 219 | 13 | 101 | 421 | 165 | 528 | 2.78e-21 | 96.7 |
| Msa0453040 | AT5G50400.1 | 25.946 | 370 | 219 | 13 | 101 | 421 | 237 | 600 | 3.14e-21 | 96.7 |
| Msa0453040 | AT2G03450.1 | 25.688 | 436 | 239 | 16 | 45 | 403 | 143 | 570 | 4.41e-21 | 96.3 |
| Msa0453040 | AT1G13900.1 | 29.630 | 270 | 148 | 8 | 172 | 403 | 305 | 570 | 6.74e-21 | 95.9 |
| Msa0453040 | AT4G24890.1 | 26.844 | 339 | 195 | 11 | 101 | 392 | 241 | 573 | 2.85e-20 | 94.0 |
| Msa0453040 | AT1G13750.1 | 25.648 | 347 | 209 | 10 | 101 | 401 | 239 | 582 | 7.34e-20 | 92.8 |
Find 114 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTACACTCTTGGAAATA+TGG | 0.197892 | 3_3:-42951744 | Msa0453040:three_prime_UTR |
| CCGACCACAGCAAAACTAAT+TGG | 0.216017 | 3_3:+42954716 | None:intergenic |
| AGAGCATATACCTTTGTTAA+AGG | 0.247102 | 3_3:-42954501 | Msa0453040:CDS |
| AGATATCTTACTTTGATATA+TGG | 0.257406 | 3_3:-42951826 | Msa0453040:three_prime_UTR |
| AAGATACACCATACGGTAAT+AGG | 0.307628 | 3_3:-42954824 | Msa0453040:CDS |
| GCACCTTCAGTTGTAGAATA+TGG | 0.309081 | 3_3:-42954923 | Msa0453040:CDS |
| ACGTGTATATAATGGAAAAT+TGG | 0.322130 | 3_3:-42952417 | Msa0453040:CDS |
| TGTACTCAGAACAATATAAA+TGG | 0.325340 | 3_3:-42954346 | Msa0453040:CDS |
| AATCCAGGTACACATTTCTT+TGG | 0.328498 | 3_3:-42954993 | Msa0453040:intron |
| TAAACTCAACACATGCCTTC+TGG | 0.336522 | 3_3:-42952121 | Msa0453040:CDS |
| TGACAGAAACGTGTATATAA+TGG | 0.346137 | 3_3:-42952425 | Msa0453040:intron |
| GCAGGACAAGAATGTACTTC+AGG | 0.352779 | 3_3:+42956391 | None:intergenic |
| GAATTCCGTGAAGCAAGTTT+TGG | 0.357920 | 3_3:-42952164 | Msa0453040:CDS |
| TTTGCTGTGGTCGGAGATCT+TGG | 0.363118 | 3_3:-42954707 | Msa0453040:CDS |
| CAACGGATTAGCAAAGAGTT+TGG | 0.373259 | 3_3:-42951944 | Msa0453040:three_prime_UTR |
| CGGTAAAATCTGATGATATC+TGG | 0.374577 | 3_3:-42952070 | Msa0453040:CDS |
| GTCTTAACTTCAAAGATTGT+TGG | 0.376220 | 3_3:-42951703 | Msa0453040:three_prime_UTR |
| TTGGTTGTCTCTTACACTCT+TGG | 0.377115 | 3_3:-42951752 | Msa0453040:three_prime_UTR |
| TACGATGTTAACCTGATTCC+TGG | 0.388167 | 3_3:-42954635 | Msa0453040:CDS |
| TTGATTTGGTCCAACCAGTT+TGG | 0.390912 | 3_3:+42954684 | None:intergenic |
| CCGGCTCATCATCGTCATTC+CGG | 0.394998 | 3_3:+42952090 | None:intergenic |
| CTTGATCCACTTTCCTCAAA+TGG | 0.396116 | 3_3:+42954443 | None:intergenic |
| CGGTAAAAGTAAACAGAATT+CGG | 0.397092 | 3_3:+42954791 | None:intergenic |
| ACGAAAGGTCGCCAGGAATC+AGG | 0.398861 | 3_3:+42954624 | None:intergenic |
| TTTGAGTTTCATTGTTATGC+TGG | 0.403756 | 3_3:+42956361 | None:intergenic |
| ACCCTCTTCTTATCCTCAAC+AGG | 0.404020 | 3_3:-42956231 | Msa0453040:intron |
| CAGGTACACATTTCTTTGGC+TGG | 0.410550 | 3_3:-42954989 | Msa0453040:CDS |
| TCGGCATACGAAAGGTCGCC+AGG | 0.422584 | 3_3:+42954617 | None:intergenic |
| CGGAATTCTGACCACTTTGG+CGG | 0.431727 | 3_3:+42952179 | None:intergenic |
| TAAACAGAATTCGGCTCTAA+AGG | 0.439226 | 3_3:+42954800 | None:intergenic |
| TTCCCTTGTGTTACCATCCA+TGG | 0.444697 | 3_3:+42954533 | None:intergenic |
| GTAGAAAATGTAACTGTAAG+AGG | 0.446204 | 3_3:+42954856 | None:intergenic |
| GATGTGATCTAATGTTGATT+TGG | 0.450180 | 3_3:+42954670 | None:intergenic |
| CATATACCTTTGTTAAAGGA+TGG | 0.451005 | 3_3:-42954497 | Msa0453040:CDS |
| TGTCAAAGGTGGACAGGAAA+AGG | 0.453174 | 3_3:-42952680 | Msa0453040:CDS |
| CATGACCAAAACTTGCTTCA+CGG | 0.454586 | 3_3:+42952159 | None:intergenic |
| GGTGCTCACATTATCATGCT+TGG | 0.459315 | 3_3:-42954389 | Msa0453040:CDS |
| CGACCACAGCAAAACTAATT+GGG | 0.462918 | 3_3:+42954717 | None:intergenic |
| AGAATGCCATGGAAGATGTA+AGG | 0.466799 | 3_3:+42956256 | None:intergenic |
| CAGCATCGTTGGGACACGTT+TGG | 0.476015 | 3_3:-42954587 | Msa0453040:CDS |
| GTAGAATATGGAACATTGCC+AGG | 0.476108 | 3_3:-42954911 | Msa0453040:CDS |
| AATTCTGACCACTTTGGCGG+TGG | 0.489479 | 3_3:+42952182 | None:intergenic |
| TTAACCTCTTTAGACAGCTC+AGG | 0.493926 | 3_3:-42952047 | Msa0453040:CDS |
| TTGTCATATTTCATGTCCCA+TGG | 0.496286 | 3_3:-42952644 | Msa0453040:CDS |
| CAGGACAAGAATGTACTTCA+GGG | 0.508702 | 3_3:+42956392 | None:intergenic |
| CAACACATGCCTTCTGGAGT+TGG | 0.510276 | 3_3:-42952115 | Msa0453040:CDS |
| GTCGGAGATCTTGGCCAAAC+TGG | 0.511189 | 3_3:-42954698 | Msa0453040:CDS |
| CGACTATATACAGCATCGTT+GGG | 0.514220 | 3_3:-42954597 | Msa0453040:CDS |
| TGGATCTGTCAAAGGTGGAC+AGG | 0.515700 | 3_3:-42952686 | Msa0453040:CDS |
| TCACGGAATTCTGACCACTT+TGG | 0.520879 | 3_3:+42952176 | None:intergenic |
| GGTGATGGAGGGAACAAAGA+AGG | 0.525513 | 3_3:-42952365 | Msa0453040:CDS |
| GATTTATATCCTATAATTCG+AGG | 0.527909 | 3_3:-42954475 | Msa0453040:CDS |
| CCGACTATATACAGCATCGT+TGG | 0.531308 | 3_3:-42954598 | Msa0453040:CDS |
| AGCTGCTATATATTAATCTC+AGG | 0.531363 | 3_3:+42951888 | None:intergenic |
| TGGAGGGAACAAAGAAGGAT+TGG | 0.532661 | 3_3:-42952360 | Msa0453040:CDS |
| AGCATAAAGCAATGGCTCCA+TGG | 0.538411 | 3_3:+42952572 | None:intergenic |
| AAACTAATTGGGAATTGAGC+TGG | 0.540026 | 3_3:+42954728 | None:intergenic |
| ACATCCTGAGCTGTCTAAAG+AGG | 0.540208 | 3_3:+42952043 | None:intergenic |
| GGTGCTGTTCATGTAACAAT+TGG | 0.545245 | 3_3:-42952386 | Msa0453040:CDS |
| TGTTATGCTGGAAATAATGC+AGG | 0.548584 | 3_3:+42956373 | None:intergenic |
| AGAACAATATAAATGGCTAA+AGG | 0.548688 | 3_3:-42954339 | Msa0453040:intron |
| ATGCCTTCTGGAGTTGGCAC+CGG | 0.559442 | 3_3:-42952109 | Msa0453040:CDS |
| GTATATAGTCGGCATACGAA+AGG | 0.560724 | 3_3:+42954609 | None:intergenic |
| GGTTAACATCGTATCTGCAT+TGG | 0.564067 | 3_3:+42954645 | None:intergenic |
| ATAAATCCATCCTTTAACAA+AGG | 0.566465 | 3_3:+42954491 | None:intergenic |
| GAGATCTTGGCCAAACTGGT+TGG | 0.574404 | 3_3:-42954694 | Msa0453040:CDS |
| CTGTGTTACTATTATACCAT+GGG | 0.577355 | 3_3:+42952628 | None:intergenic |
| CCGGAATGACGATGATGAGC+CGG | 0.578815 | 3_3:-42952090 | Msa0453040:CDS |
| GAGGTGGAAAATGCCATTTG+AGG | 0.583883 | 3_3:-42954456 | Msa0453040:CDS |
| AAGTATGACTCGGTAGCTGA+AGG | 0.586262 | 3_3:-42954887 | Msa0453040:CDS |
| AAAATGCCATTTGAGGAAAG+TGG | 0.586799 | 3_3:-42954449 | Msa0453040:CDS |
| ACAAGCACGTGAGAATCACC+TGG | 0.588099 | 3_3:-42954964 | Msa0453040:CDS |
| AATAGTAACACAGCTCATCA+AGG | 0.589055 | 3_3:-42952618 | Msa0453040:CDS |
| TGCTAGTTATAGACCATGGA+TGG | 0.590435 | 3_3:-42954546 | Msa0453040:CDS |
| GTTCCATATTCTACAACTGA+AGG | 0.590950 | 3_3:+42954920 | None:intergenic |
| CTAAAGGACCTATTACCGTA+TGG | 0.592310 | 3_3:+42954816 | None:intergenic |
| CAGGACCTTGTCCACCGCAT+CGG | 0.593262 | 3_3:+42954771 | None:intergenic |
| CCAACGATGCTGTATATAGT+CGG | 0.594807 | 3_3:+42954598 | None:intergenic |
| TTGAACTTGAAGTTACTGAC+AGG | 0.597052 | 3_3:+42956315 | None:intergenic |
| ATTCCGGTGCCAACTCCAGA+AGG | 0.606814 | 3_3:+42952106 | None:intergenic |
| GCTACCGAGTCATACTTCCC+TGG | 0.609623 | 3_3:+42954893 | None:intergenic |
| GTTCATGTAACAATTGGTGA+TGG | 0.613051 | 3_3:-42952380 | Msa0453040:CDS |
| ATCGTTGGGACACGTTTGGT+AGG | 0.618657 | 3_3:-42954583 | Msa0453040:CDS |
| AACACAGCTCATCAAGGTGA+AGG | 0.620113 | 3_3:-42952612 | Msa0453040:CDS |
| ATGTAACAATTGGTGATGGA+GGG | 0.620250 | 3_3:-42952376 | Msa0453040:CDS |
| TGAAATATGACAAGCAACCA+AGG | 0.623138 | 3_3:+42952654 | None:intergenic |
| GAAGAGGGTTCAGAATGCCA+TGG | 0.623934 | 3_3:+42956245 | None:intergenic |
| ACGCTAGCAGCATAAAGCAA+TGG | 0.624653 | 3_3:+42952564 | None:intergenic |
| CATGTAACAATTGGTGATGG+AGG | 0.625889 | 3_3:-42952377 | Msa0453040:CDS |
| TGTCCACGCATATGAACGCT+CGG | 0.625969 | 3_3:-42952520 | Msa0453040:intron |
| TGGACAGGAAAAGGACACCT+TGG | 0.626466 | 3_3:-42952671 | Msa0453040:CDS |
| GCTGTGTTACTATTATACCA+TGG | 0.628930 | 3_3:+42952627 | None:intergenic |
| CTCAGGAAAGATACACCATA+CGG | 0.635954 | 3_3:-42954831 | Msa0453040:CDS |
| ACAGCTCATCAAGGTGAAGG+TGG | 0.636860 | 3_3:-42952609 | Msa0453040:CDS |
| TAGAATATGGAACATTGCCA+GGG | 0.638513 | 3_3:-42954910 | Msa0453040:CDS |
| ATATAGATCCACCGCCAAAG+TGG | 0.638937 | 3_3:-42952190 | Msa0453040:CDS |
| ACAGATGGATCTGTCAAAGG+TGG | 0.639546 | 3_3:-42952691 | Msa0453040:intron |
| TTATATCCTATAATTCGAGG+TGG | 0.646759 | 3_3:-42954472 | Msa0453040:CDS |
| TCTACAGATGGATCTGTCAA+AGG | 0.647219 | 3_3:-42952694 | Msa0453040:intron |
| ACCTGTTGAGGATAAGAAGA+GGG | 0.651423 | 3_3:+42956230 | None:intergenic |
| AGATTTGTCATCAGTAACCC+AGG | 0.657654 | 3_3:+42954946 | None:intergenic |
| CATGGTCTATAACTAGCAAG+TGG | 0.661007 | 3_3:+42954551 | None:intergenic |
| AACCTGTTGAGGATAAGAAG+AGG | 0.662586 | 3_3:+42956229 | None:intergenic |
| CACTTGCTAGTTATAGACCA+TGG | 0.666463 | 3_3:-42954550 | Msa0453040:CDS |
| CTACCGAGCGTTCATATGCG+TGG | 0.675509 | 3_3:+42952517 | None:intergenic |
| GACCATGGATGGTAACACAA+GGG | 0.682670 | 3_3:-42954535 | Msa0453040:CDS |
| AGACCATGGATGGTAACACA+AGG | 0.682851 | 3_3:-42954536 | Msa0453040:CDS |
| CTAATTGGGAATTGAGCTGG+TGG | 0.690740 | 3_3:+42954731 | None:intergenic |
| GTTACATGAACAGCACCACA+AGG | 0.694159 | 3_3:+42952392 | None:intergenic |
| TGTGTGAAGTGAACCTGTTG+AGG | 0.695260 | 3_3:+42956218 | None:intergenic |
| AATGGAAAATTGGATCCTTG+TGG | 0.706470 | 3_3:-42952407 | Msa0453040:CDS |
| CAAGCACGTGAGAATCACCT+GGG | 0.708786 | 3_3:-42954963 | Msa0453040:CDS |
| ATTGCCAGGGAAGTATGACT+CGG | 0.709876 | 3_3:-42954897 | Msa0453040:CDS |
| TGGTGATATGATGAAAACCA+TGG | 0.721681 | 3_3:-42952589 | Msa0453040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTGTTCTTTTA+TGG | - | chr3_3:42952160-42952179 | Msa0453040:CDS | 10.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | + | chr3_3:42953992-42954011 | None:intergenic | 15.0% |
| !!! | GTTTGTTTTAAATTTAATTC+TGG | - | chr3_3:42955261-42955280 | Msa0453040:intron | 15.0% |
| !!! | TTTTTTGTAAATTTACTTAC+TGG | - | chr3_3:42955607-42955626 | Msa0453040:intron | 15.0% |
| !! | ATCTTAATTTACACTTAAAA+AGG | + | chr3_3:42955845-42955864 | None:intergenic | 15.0% |
| !! | TTGTGAAAAAAAGTAAATAT+AGG | + | chr3_3:42956293-42956312 | None:intergenic | 15.0% |
| !! | AAAAAAAATGTAACTAAAGT+TGG | - | chr3_3:42956317-42956336 | Msa0453040:CDS | 15.0% |
| !! | AATATGAGATCATAAATGAA+GGG | + | chr3_3:42951900-42951919 | None:intergenic | 20.0% |
| !! | AAATATGAGATCATAAATGA+AGG | + | chr3_3:42951901-42951920 | None:intergenic | 20.0% |
| !! | GATCAATGTTACTATATTTA+AGG | - | chr3_3:42951966-42951985 | Msa0453040:three_prime_UTR | 20.0% |
| !!! | TATATCCCATCTTTTAAAAA+GGG | + | chr3_3:42952537-42952556 | None:intergenic | 20.0% |
| !!! | ATATATCCCATCTTTTAAAA+AGG | + | chr3_3:42952538-42952557 | None:intergenic | 20.0% |
| !!! | TATTTGAAAACAGTTTTACT+TGG | - | chr3_3:42953005-42953024 | Msa0453040:intron | 20.0% |
| !! | AAATATTATGTGTGAACAAT+TGG | + | chr3_3:42954205-42954224 | None:intergenic | 20.0% |
| !! | AAAGCAAAATATTGTTTAGT+AGG | + | chr3_3:42954403-42954422 | None:intergenic | 20.0% |
| !! | CTCTCAATAAATATGTATAA+GGG | + | chr3_3:42955050-42955069 | None:intergenic | 20.0% |
| !! | TCTCTCAATAAATATGTATA+AGG | + | chr3_3:42955051-42955070 | None:intergenic | 20.0% |
| !! | GGGATGATAATTATTATAAA+CGG | + | chr3_3:42955356-42955375 | None:intergenic | 20.0% |
| !! | AGATATCTTACTTTGATATA+TGG | - | chr3_3:42956262-42956281 | Msa0453040:CDS | 20.0% |
| ! | GATCAAGTAATAAAGCAAAA+GGG | + | chr3_3:42951950-42951969 | None:intergenic | 25.0% |
| ! | TGATCAAGTAATAAAGCAAA+AGG | + | chr3_3:42951951-42951970 | None:intergenic | 25.0% |
| !!! | TTGTTTTTGTCATGTGTTTT+TGG | - | chr3_3:42952014-42952033 | Msa0453040:CDS | 25.0% |
| !! | TTTTGTTCTTTTATGGTTTC+TGG | - | chr3_3:42952167-42952186 | Msa0453040:CDS | 25.0% |
| !! | TGATTTTCTTAAATCCATGA+TGG | - | chr3_3:42952215-42952234 | Msa0453040:intron | 25.0% |
| !!! | AATAGTTCTGATTTATTGTG+AGG | - | chr3_3:42952250-42952269 | Msa0453040:intron | 25.0% |
| !!! | AACGTTTCATATTTTAAGCT+CGG | + | chr3_3:42952407-42952426 | None:intergenic | 25.0% |
| !!! | TCCATTGATGTTTTAGTATT+TGG | - | chr3_3:42952492-42952511 | Msa0453040:intron | 25.0% |
| ! | ACCAAATACTAAAACATCAA+TGG | + | chr3_3:42952496-42952515 | None:intergenic | 25.0% |
| !!! | ATATCCCATCTTTTAAAAAG+GGG | + | chr3_3:42952536-42952555 | None:intergenic | 25.0% |
| !! | TTTTTCCGATTCTCATATTT+AGG | - | chr3_3:42952608-42952627 | Msa0453040:CDS | 25.0% |
| !! | TTTTCCGATTCTCATATTTA+GGG | - | chr3_3:42952609-42952628 | Msa0453040:CDS | 25.0% |
| !! | TGACATCTATTTGAAATGAT+TGG | - | chr3_3:42952671-42952690 | Msa0453040:CDS | 25.0% |
| ! | TCAGATTCTTATATGAAAAG+TGG | - | chr3_3:42953072-42953091 | Msa0453040:intron | 25.0% |
| ! | ATAAATCCATCCTTTAACAA+AGG | + | chr3_3:42953600-42953619 | None:intergenic | 25.0% |
| ! | GATTTATATCCTATAATTCG+AGG | - | chr3_3:42953613-42953632 | Msa0453040:intron | 25.0% |
| !!! | TATTATTCTTTTGAAGTTGC+TGG | - | chr3_3:42953678-42953697 | Msa0453040:intron | 25.0% |
| ! | TGTACTCAGAACAATATAAA+TGG | - | chr3_3:42953742-42953761 | Msa0453040:intron | 25.0% |
| ! | AGAACAATATAAATGGCTAA+AGG | - | chr3_3:42953749-42953768 | Msa0453040:intron | 25.0% |
| ! | TATTTATAACCTATGAAGCA+CGG | + | chr3_3:42954100-42954119 | None:intergenic | 25.0% |
| ! | GTTATAAATAACTGTGAATG+TGG | - | chr3_3:42954110-42954129 | Msa0453040:intron | 25.0% |
| !!! | TTTTTTCACTTCTTGTTGTA+AGG | + | chr3_3:42954147-42954166 | None:intergenic | 25.0% |
| !!! | TCTGTTTCTACTAAACTTTT+AGG | - | chr3_3:42954328-42954347 | Msa0453040:intron | 25.0% |
| ! | CAAAATATTGTTTAGTAGGA+TGG | + | chr3_3:42954399-42954418 | None:intergenic | 25.0% |
| !! | ATATTTTGCTTTAGCAGTTT+TGG | - | chr3_3:42954411-42954430 | Msa0453040:CDS | 25.0% |
| !! | TATTTTGCTTTAGCAGTTTT+GGG | - | chr3_3:42954412-42954431 | Msa0453040:CDS | 25.0% |
| ! | TCAGATTGTATATAAGTGAA+AGG | - | chr3_3:42954582-42954601 | Msa0453040:CDS | 25.0% |
| ! | AAAAGTTAGAACTTTCAGAA+AGG | + | chr3_3:42954677-42954696 | None:intergenic | 25.0% |
| !!! | TAACTTTTCTGTTTCTCATT+AGG | - | chr3_3:42954689-42954708 | Msa0453040:CDS | 25.0% |
| !!! | AACTTTTCTGTTTCTCATTA+GGG | - | chr3_3:42954690-42954709 | Msa0453040:CDS | 25.0% |
| ! | ATACATTCATATGAAAACCT+AGG | - | chr3_3:42954760-42954779 | Msa0453040:CDS | 25.0% |
| ! | TCTAAATGTTTGTCATTCAT+TGG | + | chr3_3:42954811-42954830 | None:intergenic | 25.0% |
| ! | TCAATAAATATGTATAAGGG+AGG | + | chr3_3:42955047-42955066 | None:intergenic | 25.0% |
| ! | ATACATATTTATTGAGAGAG+AGG | - | chr3_3:42955052-42955071 | Msa0453040:intron | 25.0% |
| !!! | AACTCTGAAGTTATTATAGT+AGG | - | chr3_3:42955085-42955104 | Msa0453040:intron | 25.0% |
| ! | AAAAAAAGACTGTGTTGTAA+GGG | - | chr3_3:42955284-42955303 | Msa0453040:intron | 25.0% |
| !! | ACGTGTATATAATGGAAAAT+TGG | - | chr3_3:42955671-42955690 | Msa0453040:intron | 25.0% |
| ! | TTACACTTAAAAAGGAATAG+AGG | + | chr3_3:42955837-42955856 | None:intergenic | 25.0% |
| ! | TATACTATTCTTACCATGTT+TGG | - | chr3_3:42955870-42955889 | Msa0453040:intron | 25.0% |
| !! | GAGAAGATCAAGAAATTTTA+GGG | + | chr3_3:42956113-42956132 | None:intergenic | 25.0% |
| !! | AGAGAAGATCAAGAAATTTT+AGG | + | chr3_3:42956114-42956133 | None:intergenic | 25.0% |
| ! | TTTGAGTTTCATTGTTATGC+TGG | + | chr3_3:42951730-42951749 | None:intergenic | 30.0% |
| !!! | TTTGTCATGTGTTTTTGGTT+TGG | - | chr3_3:42952019-42952038 | Msa0453040:CDS | 30.0% |
| ATTGCACTAAATGATCTATG+AGG | + | chr3_3:42952141-42952160 | None:intergenic | 30.0% | |
| AGATCAGACGACTTATATTT+AGG | - | chr3_3:42952359-42952378 | Msa0453040:CDS | 30.0% | |
| CTTATGAAGTTATGAATGTG+TGG | - | chr3_3:42952450-42952469 | Msa0453040:intron | 30.0% | |
| !! | ATTGTCCCCTTTTTAAAAGA+TGG | - | chr3_3:42952528-42952547 | Msa0453040:CDS | 30.0% |
| !! | TTGTCCCCTTTTTAAAAGAT+GGG | - | chr3_3:42952529-42952548 | Msa0453040:CDS | 30.0% |
| AAGTATTATAGACTTGTGTC+TGG | - | chr3_3:42952558-42952577 | Msa0453040:CDS | 30.0% | |
| ATGAGAATCGGAAAAATTAG+AGG | + | chr3_3:42952604-42952623 | None:intergenic | 30.0% | |
| TCATCCCTAAATATGAGAAT+CGG | + | chr3_3:42952616-42952635 | None:intergenic | 30.0% | |
| !!! | TAGTACTAGTTAGTTTTCTG+AGG | + | chr3_3:42952751-42952770 | None:intergenic | 30.0% |
| GTAGATAAACTCAAAGAAGT+CGG | + | chr3_3:42952861-42952880 | None:intergenic | 30.0% | |
| !!! | GCTGTTTTTATAAACTATCG+TGG | + | chr3_3:42952977-42952996 | None:intergenic | 30.0% |
| TTATATGAAAAGTGGAATCC+AGG | - | chr3_3:42953080-42953099 | Msa0453040:intron | 30.0% | |
| GTAGAAAATGTAACTGTAAG+AGG | + | chr3_3:42953235-42953254 | None:intergenic | 30.0% | |
| CGGTAAAAGTAAACAGAATT+CGG | + | chr3_3:42953300-42953319 | None:intergenic | 30.0% | |
| ! | GATGTGATCTAATGTTGATT+TGG | + | chr3_3:42953421-42953440 | None:intergenic | 30.0% |
| AGAGCATATACCTTTGTTAA+AGG | - | chr3_3:42953587-42953606 | Msa0453040:intron | 30.0% | |
| CATATACCTTTGTTAAAGGA+TGG | - | chr3_3:42953591-42953610 | Msa0453040:intron | 30.0% | |
| TTATATCCTATAATTCGAGG+TGG | - | chr3_3:42953616-42953635 | Msa0453040:intron | 30.0% | |
| ATAAATGGCTAAAGGTTAGT+TGG | - | chr3_3:42953757-42953776 | Msa0453040:intron | 30.0% | |
| TTTCCAATTAAAGTATGTCG+TGG | - | chr3_3:42953851-42953870 | Msa0453040:intron | 30.0% | |
| TTACATGATATTCACCAAAC+TGG | - | chr3_3:42953900-42953919 | Msa0453040:intron | 30.0% | |
| TTCATAGTTTATAGCCAGTT+TGG | + | chr3_3:42953917-42953936 | None:intergenic | 30.0% | |
| TCTCAAATTATTATCGGTGT+CGG | + | chr3_3:42953986-42954005 | None:intergenic | 30.0% | |
| TATTATGTGTGAACAATTGG+AGG | + | chr3_3:42954202-42954221 | None:intergenic | 30.0% | |
| ACTAGAAACAGTTGCATTTA+TGG | + | chr3_3:42954239-42954258 | None:intergenic | 30.0% | |
| !!! | TTTAGCAGTTTTGGGATTAT+TGG | - | chr3_3:42954420-42954439 | Msa0453040:CDS | 30.0% |
| ! | GAATTAGTTGGAGATTAGTT+TGG | - | chr3_3:42954484-42954503 | Msa0453040:CDS | 30.0% |
| TTGTTCTATGCTAACTACTA+TGG | + | chr3_3:42954558-42954577 | None:intergenic | 30.0% | |
| TTGGTTACAATGCAAGTAAT+GGG | + | chr3_3:42954792-42954811 | None:intergenic | 30.0% | |
| ATTGGTTACAATGCAAGTAA+TGG | + | chr3_3:42954793-42954812 | None:intergenic | 30.0% | |
| TTGCACTTCATCATTATCAA+GGG | + | chr3_3:42954870-42954889 | None:intergenic | 30.0% | |
| TTTGCACTTCATCATTATCA+AGG | + | chr3_3:42954871-42954890 | None:intergenic | 30.0% | |
| !!! | GGCTTCTATTTTTATGTATG+TGG | + | chr3_3:42954943-42954962 | None:intergenic | 30.0% |
| ATGCATGCATATCTTTATGA+AGG | + | chr3_3:42954964-42954983 | None:intergenic | 30.0% | |
| CAAAAGAAAAATGAACAGAC+GGG | + | chr3_3:42955140-42955159 | None:intergenic | 30.0% | |
| GCAAAAGAAAAATGAACAGA+CGG | + | chr3_3:42955141-42955160 | None:intergenic | 30.0% | |
| GAAAAAAAGACTGTGTTGTA+AGG | - | chr3_3:42955283-42955302 | Msa0453040:intron | 30.0% | |
| ! | TCAACAAGAACTACTAGTTT+CGG | + | chr3_3:42955322-42955341 | None:intergenic | 30.0% |
| GATCACAACGAAGATATAAA+GGG | + | chr3_3:42955376-42955395 | None:intergenic | 30.0% | |
| AGATCACAACGAAGATATAA+AGG | + | chr3_3:42955377-42955396 | None:intergenic | 30.0% | |
| ! | CTGTGTTACTATTATACCAT+GGG | + | chr3_3:42955463-42955482 | None:intergenic | 30.0% |
| TGACAGAAACGTGTATATAA+TGG | - | chr3_3:42955663-42955682 | Msa0453040:intron | 30.0% | |
| ! | ATTCAACCTTTCTGTTTTCT+CGG | - | chr3_3:42955805-42955824 | Msa0453040:intron | 30.0% |
| ATCTATATACCTACCAAACA+TGG | + | chr3_3:42955886-42955905 | None:intergenic | 30.0% | |
| ! | CAGATATCATCAGATTTTAC+CGG | + | chr3_3:42956020-42956039 | None:intergenic | 30.0% |
| ! | CTTCTCTATTTTCTCAACAA+CGG | - | chr3_3:42956127-42956146 | Msa0453040:intron | 30.0% |
| AGCTGCTATATATTAATCTC+AGG | + | chr3_3:42956203-42956222 | None:intergenic | 30.0% | |
| TAATATATAGCAGCTTGAGT+AGG | - | chr3_3:42956208-42956227 | Msa0453040:intron | 30.0% | |
| GTCTTAACTTCAAAGATTGT+TGG | - | chr3_3:42956385-42956404 | Msa0453040:five_prime_UTR | 30.0% | |
| TGTTATGCTGGAAATAATGC+AGG | + | chr3_3:42951718-42951737 | None:intergenic | 35.0% | |
| TTGAACTTGAAGTTACTGAC+AGG | + | chr3_3:42951776-42951795 | None:intergenic | 35.0% | |
| ! | AGATGTAAGGTTTTTCTAGG+AGG | + | chr3_3:42951822-42951841 | None:intergenic | 35.0% |
| ! | GGAAGATGTAAGGTTTTTCT+AGG | + | chr3_3:42951825-42951844 | None:intergenic | 35.0% |
| GAAAAACCTTACATCTTCCA+TGG | - | chr3_3:42951826-42951845 | Msa0453040:three_prime_UTR | 35.0% | |
| AAGTACCACGTTTATGTTTC+TGG | - | chr3_3:42952050-42952069 | Msa0453040:CDS | 35.0% | |
| AAATGCCAGAAACATAAACG+TGG | + | chr3_3:42952058-42952077 | None:intergenic | 35.0% | |
| GAGAGATTATTACTGTAGCA+AGG | + | chr3_3:42952195-42952214 | None:intergenic | 35.0% | |
| !! | CTTAAATCCATGATGGATTG+TGG | - | chr3_3:42952222-42952241 | Msa0453040:intron | 35.0% |
| AAGCAGCTTCACTGAAAAAT+TGG | + | chr3_3:42952278-42952297 | None:intergenic | 35.0% | |
| !! | AATTTTTCAGTGAAGCTGCT+TGG | - | chr3_3:42952277-42952296 | Msa0453040:intron | 35.0% |
| !! | AACATCAATGGACTAGACTA+CGG | + | chr3_3:42952484-42952503 | None:intergenic | 35.0% |
| TTAGTATTTGGTTGAGTGTG+TGG | - | chr3_3:42952504-42952523 | Msa0453040:intron | 35.0% | |
| TCGGAAAAATTAGAGGTTGA+AGG | + | chr3_3:42952597-42952616 | None:intergenic | 35.0% | |
| AGTCTAAAGACGAAAAGTGA+AGG | + | chr3_3:42952800-42952819 | None:intergenic | 35.0% | |
| AGACTCTTCAGTCTTTATGT+AGG | - | chr3_3:42952815-42952834 | Msa0453040:intron | 35.0% | |
| AGACTGTTTGAGAGAACATA+TGG | - | chr3_3:42952898-42952917 | Msa0453040:intron | 35.0% | |
| AATCCAGGTACACATTTCTT+TGG | - | chr3_3:42953095-42953114 | Msa0453040:intron | 35.0% | |
| GTTCCATATTCTACAACTGA+AGG | + | chr3_3:42953171-42953190 | None:intergenic | 35.0% | |
| TAGAATATGGAACATTGCCA+GGG | - | chr3_3:42953178-42953197 | Msa0453040:intron | 35.0% | |
| ! | AGTTACATTTTCTACAGCTC+AGG | - | chr3_3:42953240-42953259 | Msa0453040:intron | 35.0% |
| AAGATACACCATACGGTAAT+AGG | - | chr3_3:42953264-42953283 | Msa0453040:intron | 35.0% | |
| ! | TAAACAGAATTCGGCTCTAA+AGG | + | chr3_3:42953291-42953310 | None:intergenic | 35.0% |
| !! | TCTGTTTACTTTTACCGATG+CGG | - | chr3_3:42953303-42953322 | Msa0453040:intron | 35.0% |
| AAACTAATTGGGAATTGAGC+TGG | + | chr3_3:42953363-42953382 | None:intergenic | 35.0% | |
| !!! | ATTCCCAATTAGTTTTGCTG+TGG | - | chr3_3:42953368-42953387 | Msa0453040:intron | 35.0% |
| ! | CATTTTCCACCTCGAATTAT+AGG | + | chr3_3:42953625-42953644 | None:intergenic | 35.0% |
| ! | AAAATGCCATTTGAGGAAAG+TGG | - | chr3_3:42953639-42953658 | Msa0453040:intron | 35.0% |
| TACATTCCAGACAAATCGAA+TGG | - | chr3_3:42953803-42953822 | Msa0453040:intron | 35.0% | |
| ACATTCCAGACAAATCGAAT+GGG | - | chr3_3:42953804-42953823 | Msa0453040:intron | 35.0% | |
| TAGCCACGACATACTTTAAT+TGG | + | chr3_3:42953857-42953876 | None:intergenic | 35.0% | |
| CTATAACACGAAACATCACA+AGG | + | chr3_3:42954299-42954318 | None:intergenic | 35.0% | |
| CTTGTGATGTTTCGTGTTAT+AGG | - | chr3_3:42954297-42954316 | Msa0453040:intron | 35.0% | |
| ! | CTTTCTAGTCTTCGAAATAG+CGG | - | chr3_3:42954373-42954392 | Msa0453040:CDS | 35.0% |
| CACACAACAACTGAATTAGT+TGG | - | chr3_3:42954472-42954491 | Msa0453040:CDS | 35.0% | |
| TGGTTACAATGCAAGTAATG+GGG | + | chr3_3:42954791-42954810 | None:intergenic | 35.0% | |
| ! | AAAGAAGCAACGGTTATTTC+TGG | + | chr3_3:42954844-42954863 | None:intergenic | 35.0% |
| ATGATGAAGTGCAAAATCCT+TGG | - | chr3_3:42954876-42954895 | Msa0453040:CDS | 35.0% | |
| GCATGCATTGCATTTACATA+TGG | - | chr3_3:42954907-42954926 | Msa0453040:CDS | 35.0% | |
| CATTGCATTTACATATGGCT+AGG | - | chr3_3:42954912-42954931 | Msa0453040:CDS | 35.0% | |
| TGAAATATGACAAGCAACCA+AGG | + | chr3_3:42955437-42955456 | None:intergenic | 35.0% | |
| TTGTCATATTTCATGTCCCA+TGG | - | chr3_3:42955444-42955463 | Msa0453040:intron | 35.0% | |
| ! | GCTGTGTTACTATTATACCA+TGG | + | chr3_3:42955464-42955483 | None:intergenic | 35.0% |
| AATAGTAACACAGCTCATCA+AGG | - | chr3_3:42955470-42955489 | Msa0453040:intron | 35.0% | |
| TGGTGATATGATGAAAACCA+TGG | - | chr3_3:42955499-42955518 | Msa0453040:intron | 35.0% | |
| AATGGAAAATTGGATCCTTG+TGG | - | chr3_3:42955681-42955700 | Msa0453040:intron | 35.0% | |
| GTTCATGTAACAATTGGTGA+TGG | - | chr3_3:42955708-42955727 | Msa0453040:intron | 35.0% | |
| !! | ATGTAACAATTGGTGATGGA+GGG | - | chr3_3:42955712-42955731 | Msa0453040:intron | 35.0% |
| TAGTATCCGAGAAAACAGAA+AGG | + | chr3_3:42955814-42955833 | None:intergenic | 35.0% | |
| CTATTCTTACCATGTTTGGT+AGG | - | chr3_3:42955874-42955893 | Msa0453040:intron | 35.0% | |
| CGGTAAAATCTGATGATATC+TGG | - | chr3_3:42956018-42956037 | Msa0453040:intron | 35.0% | |
| CTCTTACACTCTTGGAAATA+TGG | - | chr3_3:42956344-42956363 | Msa0453040:CDS | 35.0% | |
| CAGGACAAGAATGTACTTCA+GGG | + | chr3_3:42951699-42951718 | None:intergenic | 40.0% | |
| !! | TGTAAGGTTTTTCTAGGAGG+AGG | + | chr3_3:42951819-42951838 | None:intergenic | 40.0% |
| AGAATGCCATGGAAGATGTA+AGG | + | chr3_3:42951835-42951854 | None:intergenic | 40.0% | |
| ACCTGTTGAGGATAAGAAGA+GGG | + | chr3_3:42951861-42951880 | None:intergenic | 40.0% | |
| AACCTGTTGAGGATAAGAAG+AGG | + | chr3_3:42951862-42951881 | None:intergenic | 40.0% | |
| GTTCTCTCAAACAGTCTCAT+AGG | + | chr3_3:42952895-42952914 | None:intergenic | 40.0% | |
| GAGCTTATGGAAATAAGCTG+AGG | + | chr3_3:42952953-42952972 | None:intergenic | 40.0% | |
| AAACTATCGTGGAGAGCTTA+TGG | + | chr3_3:42952966-42952985 | None:intergenic | 40.0% | |
| AGATTTGTCATCAGTAACCC+AGG | + | chr3_3:42953145-42953164 | None:intergenic | 40.0% | |
| GCACCTTCAGTTGTAGAATA+TGG | - | chr3_3:42953165-42953184 | Msa0453040:intron | 40.0% | |
| GTAGAATATGGAACATTGCC+AGG | - | chr3_3:42953177-42953196 | Msa0453040:intron | 40.0% | |
| CTCAGGAAAGATACACCATA+CGG | - | chr3_3:42953257-42953276 | Msa0453040:intron | 40.0% | |
| CTAAAGGACCTATTACCGTA+TGG | + | chr3_3:42953275-42953294 | None:intergenic | 40.0% | |
| CGACCACAGCAAAACTAATT+GGG | + | chr3_3:42953374-42953393 | None:intergenic | 40.0% | |
| !!! | CCAATTAGTTTTGCTGTGGT+CGG | - | chr3_3:42953372-42953391 | Msa0453040:intron | 40.0% |
| !! | TTGATTTGGTCCAACCAGTT+TGG | + | chr3_3:42953407-42953426 | None:intergenic | 40.0% |
| GGTTAACATCGTATCTGCAT+TGG | + | chr3_3:42953446-42953465 | None:intergenic | 40.0% | |
| TACGATGTTAACCTGATTCC+TGG | - | chr3_3:42953453-42953472 | Msa0453040:intron | 40.0% | |
| GTATATAGTCGGCATACGAA+AGG | + | chr3_3:42953482-42953501 | None:intergenic | 40.0% | |
| CCAACGATGCTGTATATAGT+CGG | + | chr3_3:42953493-42953512 | None:intergenic | 40.0% | |
| CGACTATATACAGCATCGTT+GGG | - | chr3_3:42953491-42953510 | Msa0453040:intron | 40.0% | |
| CATGGTCTATAACTAGCAAG+TGG | + | chr3_3:42953540-42953559 | None:intergenic | 40.0% | |
| ! | CACTTGCTAGTTATAGACCA+TGG | - | chr3_3:42953538-42953557 | Msa0453040:intron | 40.0% |
| TGCTAGTTATAGACCATGGA+TGG | - | chr3_3:42953542-42953561 | Msa0453040:intron | 40.0% | |
| CTTGATCCACTTTCCTCAAA+TGG | + | chr3_3:42953648-42953667 | None:intergenic | 40.0% | |
| !! | ATTGGAGGCATCAAGAAAAC+AGG | + | chr3_3:42954187-42954206 | None:intergenic | 40.0% |
| AACAGTTGCATTTATGGCAG+TGG | + | chr3_3:42954233-42954252 | None:intergenic | 40.0% | |
| ACGAAACATCACAAGGTTCA+TGG | + | chr3_3:42954292-42954311 | None:intergenic | 40.0% | |
| GGTTACAATGCAAGTAATGG+GGG | + | chr3_3:42954790-42954809 | None:intergenic | 40.0% | |
| TCAAGGGAAGAAAGAAGCAA+CGG | + | chr3_3:42954854-42954873 | None:intergenic | 40.0% | |
| TCTTCGTTGTGATCTACAGA+TGG | - | chr3_3:42955382-42955401 | Msa0453040:intron | 40.0% | |
| TCTACAGATGGATCTGTCAA+AGG | - | chr3_3:42955394-42955413 | Msa0453040:intron | 40.0% | |
| !!! | AGCGTCGATTTAGTTTTTGC+TGG | - | chr3_3:42955542-42955561 | Msa0453040:intron | 40.0% |
| !! | GGTGCTGTTCATGTAACAAT+TGG | - | chr3_3:42955702-42955721 | Msa0453040:intron | 40.0% |
| !! | CATGTAACAATTGGTGATGG+AGG | - | chr3_3:42955711-42955730 | Msa0453040:intron | 40.0% |
| ! | GAATTCCGTGAAGCAAGTTT+TGG | - | chr3_3:42955924-42955943 | Msa0453040:intron | 40.0% |
| ! | CATGACCAAAACTTGCTTCA+CGG | + | chr3_3:42955932-42955951 | None:intergenic | 40.0% |
| TAAACTCAACACATGCCTTC+TGG | - | chr3_3:42955967-42955986 | Msa0453040:intron | 40.0% | |
| TTAACCTCTTTAGACAGCTC+AGG | - | chr3_3:42956041-42956060 | Msa0453040:intron | 40.0% | |
| !! | CAACGGATTAGCAAAGAGTT+TGG | - | chr3_3:42956144-42956163 | Msa0453040:intron | 40.0% |
| ATATAGCAGCTTGAGTAGGT+TGG | - | chr3_3:42956212-42956231 | Msa0453040:intron | 40.0% | |
| TTGGTTGTCTCTTACACTCT+TGG | - | chr3_3:42956336-42956355 | Msa0453040:CDS | 40.0% | |
| GCAGGACAAGAATGTACTTC+AGG | + | chr3_3:42951700-42951719 | None:intergenic | 45.0% | |
| ACCCTCTTCTTATCCTCAAC+AGG | - | chr3_3:42951857-42951876 | Msa0453040:intron | 45.0% | |
| TGTGTGAAGTGAACCTGTTG+AGG | + | chr3_3:42951873-42951892 | None:intergenic | 45.0% | |
| TTAGCGACCACAATCCATCA+TGG | + | chr3_3:42952232-42952251 | None:intergenic | 45.0% | |
| GTGAAGCTGCTTGGTTGATT+CGG | - | chr3_3:42952286-42952305 | Msa0453040:intron | 45.0% | |
| ! | TGAAGCTGCTTGGTTGATTC+GGG | - | chr3_3:42952287-42952306 | Msa0453040:intron | 45.0% |
| !! | TGCTTGGTTGATTCGGGAAA+TGG | - | chr3_3:42952293-42952312 | Msa0453040:intron | 45.0% |
| CTGCAGTCAATCACAATTGC+TGG | - | chr3_3:42952332-42952351 | Msa0453040:intron | 45.0% | |
| TCAAAGAAGTCGGTCCAAAC+AGG | + | chr3_3:42952851-42952870 | None:intergenic | 45.0% | |
| ATAAGCTGAGGACAGCTTCT+AGG | + | chr3_3:42952941-42952960 | None:intergenic | 45.0% | |
| CAGCCAAAGAAATGTGTACC+TGG | + | chr3_3:42953101-42953120 | None:intergenic | 45.0% | |
| CAGGTACACATTTCTTTGGC+TGG | - | chr3_3:42953099-42953118 | Msa0453040:intron | 45.0% | |
| ! | ATTGCCAGGGAAGTATGACT+CGG | - | chr3_3:42953191-42953210 | Msa0453040:intron | 45.0% |
| !! | AAGTATGACTCGGTAGCTGA+AGG | - | chr3_3:42953201-42953220 | Msa0453040:intron | 45.0% |
| !! | GTTTACTTTTACCGATGCGG+TGG | - | chr3_3:42953306-42953325 | Msa0453040:intron | 45.0% |
| CTAATTGGGAATTGAGCTGG+TGG | + | chr3_3:42953360-42953379 | None:intergenic | 45.0% | |
| CCGACCACAGCAAAACTAAT+TGG | + | chr3_3:42953375-42953394 | None:intergenic | 45.0% | |
| CCGACTATATACAGCATCGT+TGG | - | chr3_3:42953490-42953509 | Msa0453040:intron | 45.0% | |
| AGACCATGGATGGTAACACA+AGG | - | chr3_3:42953552-42953571 | Msa0453040:intron | 45.0% | |
| GACCATGGATGGTAACACAA+GGG | - | chr3_3:42953553-42953572 | Msa0453040:intron | 45.0% | |
| TTCCCTTGTGTTACCATCCA+TGG | + | chr3_3:42953558-42953577 | None:intergenic | 45.0% | |
| ! | GAGGTGGAAAATGCCATTTG+AGG | - | chr3_3:42953632-42953651 | Msa0453040:intron | 45.0% |
| GGTGCTCACATTATCATGCT+TGG | - | chr3_3:42953699-42953718 | Msa0453040:intron | 45.0% | |
| ! | TAGAGCCCATTCGATTTGTC+TGG | + | chr3_3:42953812-42953831 | None:intergenic | 45.0% |
| TATGAACTCCGACAGAGACA+TGG | - | chr3_3:42953931-42953950 | Msa0453040:intron | 45.0% | |
| TTCCTCGATTAGGTGTATCC+CGG | + | chr3_3:42954074-42954093 | None:intergenic | 45.0% | |
| GATAATTCCGTAAAGCAGCG+CGG | + | chr3_3:42954726-42954745 | None:intergenic | 45.0% | |
| AATGCATGCATCTCTCACCA+AGG | + | chr3_3:42954896-42954915 | None:intergenic | 45.0% | |
| ACAGATGGATCTGTCAAAGG+TGG | - | chr3_3:42955397-42955416 | Msa0453040:intron | 45.0% | |
| TGTCAAAGGTGGACAGGAAA+AGG | - | chr3_3:42955408-42955427 | Msa0453040:intron | 45.0% | |
| AACACAGCTCATCAAGGTGA+AGG | - | chr3_3:42955476-42955495 | Msa0453040:intron | 45.0% | |
| AGCATAAAGCAATGGCTCCA+TGG | + | chr3_3:42955519-42955538 | None:intergenic | 45.0% | |
| ACGCTAGCAGCATAAAGCAA+TGG | + | chr3_3:42955527-42955546 | None:intergenic | 45.0% | |
| GTTACATGAACAGCACCACA+AGG | + | chr3_3:42955699-42955718 | None:intergenic | 45.0% | |
| TGGAGGGAACAAAGAAGGAT+TGG | - | chr3_3:42955728-42955747 | Msa0453040:intron | 45.0% | |
| ATATAGATCCACCGCCAAAG+TGG | - | chr3_3:42955898-42955917 | Msa0453040:intron | 45.0% | |
| TCACGGAATTCTGACCACTT+TGG | + | chr3_3:42955915-42955934 | None:intergenic | 45.0% | |
| !! | CGTGAAGCAAGTTTTGGTCA+TGG | - | chr3_3:42955930-42955949 | Msa0453040:intron | 45.0% |
| ACATCCTGAGCTGTCTAAAG+AGG | + | chr3_3:42956048-42956067 | None:intergenic | 45.0% | |
| TTACTCACTCCAAGGACTGA+AGG | + | chr3_3:42956238-42956257 | None:intergenic | 45.0% | |
| ATCTCAGCTTACTCACTCCA+AGG | + | chr3_3:42956246-42956265 | None:intergenic | 45.0% | |
| GAAGAGGGTTCAGAATGCCA+TGG | + | chr3_3:42951846-42951865 | None:intergenic | 50.0% | |
| TTGACTGCAGTGACTCTGCA+GGG | + | chr3_3:42952322-42952341 | None:intergenic | 50.0% | |
| ATTGACTGCAGTGACTCTGC+AGG | + | chr3_3:42952323-42952342 | None:intergenic | 50.0% | |
| TAGGCGATCATGAGCCTGTT+TGG | - | chr3_3:42952834-42952853 | Msa0453040:intron | 50.0% | |
| ACAAGCACGTGAGAATCACC+TGG | - | chr3_3:42953124-42953143 | Msa0453040:intron | 50.0% | |
| CAAGCACGTGAGAATCACCT+GGG | - | chr3_3:42953125-42953144 | Msa0453040:intron | 50.0% | |
| ! | TTTTACCGATGCGGTGGACA+AGG | - | chr3_3:42953312-42953331 | Msa0453040:intron | 50.0% |
| ! | TTTGCTGTGGTCGGAGATCT+TGG | - | chr3_3:42953381-42953400 | Msa0453040:intron | 50.0% |
| GAGATCTTGGCCAAACTGGT+TGG | - | chr3_3:42953394-42953413 | Msa0453040:intron | 50.0% | |
| ATCGTTGGGACACGTTTGGT+AGG | - | chr3_3:42953505-42953524 | Msa0453040:intron | 50.0% | |
| TCCGACAGAGACATGGACAT+CGG | - | chr3_3:42953938-42953957 | Msa0453040:intron | 50.0% | |
| !! | TATTATCGGTGTCGGCGTGT+CGG | + | chr3_3:42953978-42953997 | None:intergenic | 50.0% |
| GATTAGGTGTATCCCGGTGT+CGG | + | chr3_3:42954068-42954087 | None:intergenic | 50.0% | |
| AGCACGGACATTCCTCGATT+AGG | + | chr3_3:42954084-42954103 | None:intergenic | 50.0% | |
| GAGGAATGTCCGTGCTTCAT+AGG | - | chr3_3:42954088-42954107 | Msa0453040:intron | 50.0% | |
| ! | CAAGTAATGGGGGTAGTCCT+AGG | + | chr3_3:42954780-42954799 | None:intergenic | 50.0% |
| TGGATCTGTCAAAGGTGGAC+AGG | - | chr3_3:42955402-42955421 | Msa0453040:intron | 50.0% | |
| TGGACAGGAAAAGGACACCT+TGG | - | chr3_3:42955417-42955436 | Msa0453040:intron | 50.0% | |
| ACAGCTCATCAAGGTGAAGG+TGG | - | chr3_3:42955479-42955498 | Msa0453040:intron | 50.0% | |
| TGTCCACGCATATGAACGCT+CGG | - | chr3_3:42955568-42955587 | Msa0453040:intron | 50.0% | |
| !! | GGTGATGGAGGGAACAAAGA+AGG | - | chr3_3:42955723-42955742 | Msa0453040:intron | 50.0% |
| AATTCTGACCACTTTGGCGG+TGG | + | chr3_3:42955909-42955928 | None:intergenic | 50.0% | |
| CGGAATTCTGACCACTTTGG+CGG | + | chr3_3:42955912-42955931 | None:intergenic | 50.0% | |
| !! | CAACACATGCCTTCTGGAGT+TGG | - | chr3_3:42955973-42955992 | Msa0453040:intron | 50.0% |
| GCTACCGAGTCATACTTCCC+TGG | + | chr3_3:42953198-42953217 | None:intergenic | 55.0% | |
| !! | GGTGTTTTGAGCTGGAGCTC+AGG | + | chr3_3:42953339-42953358 | None:intergenic | 55.0% |
| !! | GAGCTGGTGGTGTTTTGAGC+TGG | + | chr3_3:42953347-42953366 | None:intergenic | 55.0% |
| GTCGGAGATCTTGGCCAAAC+TGG | - | chr3_3:42953390-42953409 | Msa0453040:intron | 55.0% | |
| ACGAAAGGTCGCCAGGAATC+AGG | + | chr3_3:42953467-42953486 | None:intergenic | 55.0% | |
| CAGCATCGTTGGGACACGTT+TGG | - | chr3_3:42953501-42953520 | Msa0453040:intron | 55.0% | |
| CCCGATGTCCATGTCTCTGT+CGG | + | chr3_3:42953942-42953961 | None:intergenic | 55.0% | |
| CCGACAGAGACATGGACATC+GGG | - | chr3_3:42953939-42953958 | Msa0453040:intron | 55.0% | |
| CACCGGGATACACCTAATCG+AGG | - | chr3_3:42954069-42954088 | Msa0453040:intron | 55.0% | |
| CTACCGAGCGTTCATATGCG+TGG | + | chr3_3:42955574-42955593 | None:intergenic | 55.0% | |
| CACGCATATGAACGCTCGGT+AGG | - | chr3_3:42955572-42955591 | Msa0453040:intron | 55.0% | |
| !! | ATGCCTTCTGGAGTTGGCAC+CGG | - | chr3_3:42955979-42955998 | Msa0453040:intron | 55.0% |
| ! | ATTCCGGTGCCAACTCCAGA+AGG | + | chr3_3:42955985-42956004 | None:intergenic | 55.0% |
| CCGGCTCATCATCGTCATTC+CGG | + | chr3_3:42956001-42956020 | None:intergenic | 55.0% | |
| CCGGAATGACGATGATGAGC+CGG | - | chr3_3:42955998-42956017 | Msa0453040:intron | 55.0% | |
| !! | GTAGGTTGGCCTTCAGTCCT+TGG | - | chr3_3:42956226-42956245 | Msa0453040:intron | 55.0% |
| CAGGACCTTGTCCACCGCAT+CGG | + | chr3_3:42953320-42953339 | None:intergenic | 60.0% | |
| TCGGCATACGAAAGGTCGCC+AGG | + | chr3_3:42953474-42953493 | None:intergenic | 60.0% | |
| CATGGACATCGGGCACGACA+CGG | - | chr3_3:42953949-42953968 | Msa0453040:intron | 60.0% | |
| CACTGATGCGTGTCCGACAC+CGG | - | chr3_3:42954052-42954071 | Msa0453040:intron | 60.0% | |
| ACTGATGCGTGTCCGACACC+GGG | - | chr3_3:42954053-42954072 | Msa0453040:intron | 60.0% | |
| ! | ACGCACTCCGCGCTGCTTTA+CGG | - | chr3_3:42954716-42954735 | Msa0453040:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 42951688 | 42956422 | 42951688 | ID=Msa0453040;Name=Msa0453040 |
| chr3_3 | mRNA | 42951688 | 42956422 | 42951688 | ID=Msa0453040-mRNA-1;Parent=Msa0453040;Name=Msa0453040-mRNA-1;_AED=0.22;_eAED=0.22;_QI=50|1|1|1|0.8|0.66|6|282|435 |
| chr3_3 | exon | 42951688 | 42951859 | 42951688 | ID=Msa0453040-mRNA-1:exon:7796;Parent=Msa0453040-mRNA-1 |
| chr3_3 | exon | 42951885 | 42952214 | 42951885 | ID=Msa0453040-mRNA-1:exon:7795;Parent=Msa0453040-mRNA-1 |
| chr3_3 | exon | 42952353 | 42952441 | 42952353 | ID=Msa0453040-mRNA-1:exon:7794;Parent=Msa0453040-mRNA-1 |
| chr3_3 | exon | 42952521 | 42952709 | 42952521 | ID=Msa0453040-mRNA-1:exon:7793;Parent=Msa0453040-mRNA-1 |
| chr3_3 | exon | 42954340 | 42955008 | 42954340 | ID=Msa0453040-mRNA-1:exon:7792;Parent=Msa0453040-mRNA-1 |
| chr3_3 | exon | 42956232 | 42956422 | 42956232 | ID=Msa0453040-mRNA-1:exon:7791;Parent=Msa0453040-mRNA-1 |
| chr3_3 | five_prime_UTR | 42956373 | 42956422 | 42956373 | ID=Msa0453040-mRNA-1:five_prime_utr;Parent=Msa0453040-mRNA-1 |
| chr3_3 | CDS | 42956232 | 42956372 | 42956232 | ID=Msa0453040-mRNA-1:cds;Parent=Msa0453040-mRNA-1 |
| chr3_3 | CDS | 42954340 | 42955008 | 42954340 | ID=Msa0453040-mRNA-1:cds;Parent=Msa0453040-mRNA-1 |
| chr3_3 | CDS | 42952521 | 42952709 | 42952521 | ID=Msa0453040-mRNA-1:cds;Parent=Msa0453040-mRNA-1 |
| chr3_3 | CDS | 42952353 | 42952441 | 42952353 | ID=Msa0453040-mRNA-1:cds;Parent=Msa0453040-mRNA-1 |
| chr3_3 | CDS | 42951995 | 42952214 | 42951995 | ID=Msa0453040-mRNA-1:cds;Parent=Msa0453040-mRNA-1 |
| chr3_3 | three_prime_UTR | 42951885 | 42951994 | 42951885 | ID=Msa0453040-mRNA-1:three_prime_utr;Parent=Msa0453040-mRNA-1 |
| chr3_3 | three_prime_UTR | 42951688 | 42951859 | 42951688 | ID=Msa0453040-mRNA-1:three_prime_utr;Parent=Msa0453040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
