AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1283930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1283930 MtrunA17_Chr8g0355721 92.308 156 12 0 1 156 1 156 1.25e-105 298
Msa1283930 MtrunA17_Chr8g0355741 81.529 157 28 1 1 156 1 157 4.31e-93 266
Msa1283930 MtrunA17_Chr8g0355661 78.344 157 32 2 1 156 1 156 2.44e-88 254
Msa1283930 MtrunA17_Chr8g0355781 76.316 152 36 0 1 152 1 152 1.38e-86 250
Msa1283930 MtrunA17_Chr8g0355811 74.510 153 38 1 1 153 1 152 8.06e-84 243
Msa1283930 MtrunA17_Chr8g0355761 75.000 152 38 0 1 152 1 152 1.12e-83 242
Msa1283930 MtrunA17_Chr8g0355641 69.872 156 46 1 1 155 1 156 9.29e-81 235
Msa1283930 MtrunA17_Chr8g0355821 70.588 153 44 1 1 153 1 152 5.55e-80 233
Msa1283930 MtrunA17_Chr8g0355801 70.588 153 44 1 1 153 1 152 3.90e-78 228
Msa1283930 MtrunA17_Chr8g0355791 69.281 153 46 1 1 153 1 152 4.48e-76 223
Msa1283930 MtrunA17_Chr8g0355771 67.974 153 48 1 1 153 1 152 8.82e-75 220
Msa1283930 MtrunA17_Chr1g0160371 43.137 153 84 2 1 151 1 152 1.01e-40 134
Msa1283930 MtrunA17_Chr1g0160381 40.523 153 88 2 1 151 5 156 2.38e-40 133
Msa1283930 MtrunA17_Chr1g0160391 37.179 156 90 4 1 149 1 155 3.60e-29 104
Msa1283930 MtrunA17_Chr8g0339261 35.616 146 91 3 6 150 8 151 1.23e-28 103
Msa1283930 MtrunA17_Chr1g0160801 38.514 148 82 5 7 152 7 147 4.09e-26 96.7
Msa1283930 MtrunA17_Chr1g0160351 45.161 93 49 1 61 151 1 93 1.26e-22 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1283930 AT5G28010.1 36.242 149 92 3 3 149 15 162 7.27e-27 99.4
Msa1283930 AT5G28010.2 36.242 149 92 3 3 149 15 162 7.27e-27 99.4
Msa1283930 AT1G70890.1 37.584 149 90 3 3 149 7 154 2.79e-26 97.8
Msa1283930 AT1G70830.5 34.899 149 94 3 3 149 22 169 5.49e-24 92.0
Msa1283930 AT1G70830.3 34.899 149 94 3 3 149 22 169 1.02e-23 92.4
Msa1283930 AT1G70840.1 32.886 149 97 3 3 149 20 167 2.33e-23 90.5
Msa1283930 AT1G70830.2 34.899 149 94 3 3 149 22 169 3.61e-23 92.0
Msa1283930 AT5G28000.1 32.886 149 97 3 3 149 13 160 9.62e-23 88.6
Msa1283930 AT1G70830.1 34.899 149 94 3 3 149 22 169 9.92e-23 92.4
Msa1283930 AT1G70830.1 33.557 149 96 3 3 149 184 331 3.60e-21 88.2
Msa1283930 AT1G70870.1 35.948 153 81 4 1 151 1 138 8.70e-22 85.5
Msa1283930 AT1G70830.4 33.557 149 96 3 3 149 137 284 1.31e-21 88.6
Msa1283930 AT1G70830.4 30.435 92 63 1 59 149 31 122 6.47e-11 59.3
Msa1283930 AT1G70850.2 32.886 149 97 3 3 149 9 156 1.67e-21 87.4
Msa1283930 AT1G23120.1 30.769 143 94 3 7 149 7 144 4.42e-21 84.0
Msa1283930 AT1G70850.3 32.886 149 97 3 3 149 9 156 4.71e-21 87.4
Msa1283930 AT1G70850.3 33.094 139 90 3 13 149 175 312 9.05e-20 84.0
Msa1283930 AT1G70850.1 32.886 149 97 3 3 149 9 156 4.71e-21 87.4
Msa1283930 AT1G70850.1 33.094 139 90 3 13 149 175 312 9.05e-20 84.0
Msa1283930 AT4G23670.1 34.641 153 97 3 1 152 1 151 7.56e-21 83.6
Msa1283930 AT1G23130.1 30.405 148 101 2 3 149 10 156 1.21e-20 83.2
Msa1283930 AT1G23120.2 30.769 143 94 3 7 149 57 194 1.30e-20 84.0
Msa1283930 AT1G70880.1 30.872 149 100 3 3 149 8 155 5.31e-20 81.6
Msa1283930 AT2G01520.1 32.026 153 101 3 1 152 1 151 7.42e-19 78.2
Msa1283930 AT4G23680.1 32.026 153 101 3 1 152 1 151 2.92e-18 76.6
Msa1283930 AT1G14930.1 32.298 161 92 5 1 153 1 152 1.15e-17 75.5
Msa1283930 AT2G01530.1 32.026 153 101 3 1 152 1 151 2.27e-17 74.3
Msa1283930 AT4G14060.1 32.680 153 100 3 1 152 1 151 2.86e-17 74.3
Msa1283930 AT1G35260.1 28.966 145 99 3 7 149 6 148 3.74e-17 73.9
Msa1283930 AT1G24020.1 32.692 156 103 2 1 155 1 155 5.09e-16 71.2
Msa1283930 AT1G24020.2 32.692 156 103 2 1 155 1 155 5.09e-16 71.2
Msa1283930 AT1G30990.1 32.000 150 98 4 1 149 1 147 2.18e-15 69.3
Msa1283930 AT1G14940.1 30.000 150 102 3 1 149 1 148 3.75e-14 66.2
Msa1283930 AT3G26460.1 32.051 156 98 5 1 152 1 152 8.39e-14 65.1
Msa1283930 AT1G14950.1 28.947 152 105 3 1 151 1 150 1.37e-13 64.7
Msa1283930 AT1G35310.1 25.362 138 100 3 13 149 12 147 2.00e-12 61.6
Msa1283930 AT1G14960.1 28.571 154 107 3 1 153 1 152 8.49e-12 60.1
Msa1283930 AT3G26450.1 27.273 154 108 4 1 152 1 152 2.96e-11 58.5

Find 41 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGCACTGCTGCTGCTAAA+TGG 0.310932 8_3:-25765077 Msa1283930:CDS
CTTCCCTTTCTTCTAAGAAA+TGG 0.349077 8_3:-25766201 Msa1283930:exon
TATGTGATGAAATCAATAAA+TGG 0.369456 8_3:-25764744 Msa1283930:three_prime_UTR
CACCCTTATCAATGACTTCA+AGG 0.380806 8_3:+25765100 None:intergenic
TTATAGAGCTATCTTTGCTT+TGG 0.392094 8_3:+25764957 None:intergenic
AATTAGTGTGATATTTGTAA+TGG 0.409729 8_3:-25764860 Msa1283930:three_prime_UTR
ATATTGTTGCATATGCATAT+TGG 0.412178 8_3:-25764836 Msa1283930:three_prime_UTR
TAGTAATGGGTTATTGCATT+GGG 0.416848 8_3:-25764910 Msa1283930:three_prime_UTR
TGTAACAAATAACTAGTAAT+GGG 0.422186 8_3:-25764923 Msa1283930:three_prime_UTR
AGCACCATTTCTTAGAAGAA+AGG 0.435379 8_3:+25766197 None:intergenic
AAACACTGGACTTACGTCAT+AGG 0.436108 8_3:-25766017 Msa1283930:intron
TTCTAAGAAATGGTGCTCTC+TGG 0.436928 8_3:-25766191 Msa1283930:exon
CATCCTTGAAGTCATTGATA+AGG 0.445764 8_3:-25765103 Msa1283930:CDS
AAGTATTCCATGTAGCCATT+TGG 0.448595 8_3:+25765015 None:intergenic
CTTCTATGTGATGTTTGTAA+TGG 0.450639 8_3:-25764813 Msa1283930:three_prime_UTR
CTAGTAATGGGTTATTGCAT+TGG 0.451009 8_3:-25764911 Msa1283930:three_prime_UTR
AACACTTATAAGCTCTTTGG+TGG 0.457999 8_3:-25765159 Msa1283930:CDS
GCACCATTTCTTAGAAGAAA+GGG 0.460369 8_3:+25766198 None:intergenic
ATGTAACAAATAACTAGTAA+TGG 0.468583 8_3:-25764924 Msa1283930:three_prime_UTR
AACTTCATGAAGGTGAAGAT+TGG 0.478377 8_3:-25766058 Msa1283930:CDS
GGTAAGCTCAGTACTGAAGT+TGG 0.490802 8_3:-25766170 Msa1283930:CDS
AATGGGTTATTGCATTGGGT+TGG 0.493837 8_3:-25764906 Msa1283930:three_prime_UTR
ATCCTTGAAGTCATTGATAA+GGG 0.494628 8_3:-25765102 Msa1283930:CDS
AGATATTGATGAGCACTATA+AGG 0.500590 8_3:-25765136 Msa1283930:CDS
GAACAGATTGTAGAACTTGT+CGG 0.501167 8_3:+25766133 None:intergenic
TATTCCATGTAGCCATTTGG+AGG 0.517921 8_3:+25765018 None:intergenic
AGATTGGCATCACACTGATT+CGG 0.519723 8_3:-25766042 Msa1283930:CDS
AATGGCTACATGGAATACTT+TGG 0.525683 8_3:-25765012 Msa1283930:CDS
TGACCCTCCAAATGGCTACA+TGG 0.526835 8_3:-25765022 Msa1283930:CDS
GAGGATATTGACCCTCCAAA+TGG 0.540200 8_3:-25765030 Msa1283930:CDS
TATGATGAACTCTTTCACAA+AGG 0.552779 8_3:+25766084 None:intergenic
ACACTTTCATCAACTCACAT+AGG 0.573859 8_3:-25766242 None:intergenic
GAAGTCATTGATAAGGGTGA+TGG 0.579318 8_3:-25765096 Msa1283930:CDS
ATCATAATTCACAGATGGCA+AGG 0.582682 8_3:-25765232 Msa1283930:intron
CATCATACAAAACTTCATGA+AGG 0.606616 8_3:-25766068 Msa1283930:CDS
ACACTGATTCGGTTAAACAC+TGG 0.614381 8_3:-25766031 Msa1283930:CDS
ATTCCATGTAGCCATTTGGA+GGG 0.625101 8_3:+25765019 None:intergenic
AGATTGTAGAACTTGTCGGC+GGG 0.646397 8_3:+25766137 None:intergenic
TGAATATGAAAAGATCAATG+AGG 0.667026 8_3:-25765049 Msa1283930:CDS
CAGATTGTAGAACTTGTCGG+CGG 0.688816 8_3:+25766136 None:intergenic
AGTGTGATGTCTGTACATGA+CGG 0.731855 8_3:-25764786 Msa1283930:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGGAATAATAAATATTTATA+AGG + chr8_3:25765572-25765591 None:intergenic 10.0%
!!! ATAGTTTATTTGTTAAAAAA+TGG - chr8_3:25765636-25765655 Msa1283930:intron 10.0%
!!! TAGTTTATTTGTTAAAAAAT+GGG - chr8_3:25765637-25765656 Msa1283930:intron 10.0%
!! AGGAATAATAAATATTTATA+AGG + chr8_3:25765572-25765591 None:intergenic 10.0%
!!! ATAGTTTATTTGTTAAAAAA+TGG - chr8_3:25765636-25765655 Msa1283930:intron 10.0%
!!! TAGTTTATTTGTTAAAAAAT+GGG - chr8_3:25765637-25765656 Msa1283930:intron 10.0%
!! AATTAAATAAGATGATGATT+TGG + chr8_3:25765004-25765023 None:intergenic 15.0%
!! AAAAAAAATCAACAATCATT+TGG - chr8_3:25765329-25765348 Msa1283930:intron 15.0%
!! AAAAAAATCAACAATCATTT+GGG - chr8_3:25765330-25765349 Msa1283930:intron 15.0%
!! ACAAATAAAAATGAAAACTT+TGG + chr8_3:25765691-25765710 None:intergenic 15.0%
!! AATTAAATAAGATGATGATT+TGG + chr8_3:25765004-25765023 None:intergenic 15.0%
!! AAAAAAAATCAACAATCATT+TGG - chr8_3:25765329-25765348 Msa1283930:intron 15.0%
!! AAAAAAATCAACAATCATTT+GGG - chr8_3:25765330-25765349 Msa1283930:intron 15.0%
!! ACAAATAAAAATGAAAACTT+TGG + chr8_3:25765691-25765710 None:intergenic 15.0%
!!! TGTTGATTTTTTTTGTCATA+AGG + chr8_3:25765323-25765342 None:intergenic 20.0%
!! ATGTAACAAATAACTAGTAA+TGG - chr8_3:25766035-25766054 Msa1283930:CDS 20.0%
!! TGTAACAAATAACTAGTAAT+GGG - chr8_3:25766036-25766055 Msa1283930:CDS 20.0%
!! AATTAGTGTGATATTTGTAA+TGG - chr8_3:25766099-25766118 Msa1283930:CDS 20.0%
!! TATGTGATGAAATCAATAAA+TGG - chr8_3:25766215-25766234 Msa1283930:five_prime_UTR 20.0%
!!! TGTTGATTTTTTTTGTCATA+AGG + chr8_3:25765323-25765342 None:intergenic 20.0%
!! ATGTAACAAATAACTAGTAA+TGG - chr8_3:25766035-25766054 Msa1283930:CDS 20.0%
!! TGTAACAAATAACTAGTAAT+GGG - chr8_3:25766036-25766055 Msa1283930:CDS 20.0%
!! AATTAGTGTGATATTTGTAA+TGG - chr8_3:25766099-25766118 Msa1283930:CDS 20.0%
!! TATGTGATGAAATCAATAAA+TGG - chr8_3:25766215-25766234 Msa1283930:five_prime_UTR 20.0%
! ATAAGAAAGAAACAAGTACA+TGG - chr8_3:25765109-25765128 Msa1283930:CDS 25.0%
! TGGGAAGAAAAAAAAAATCA+GGG + chr8_3:25765192-25765211 None:intergenic 25.0%
! TTGGGAAGAAAAAAAAAATC+AGG + chr8_3:25765193-25765212 None:intergenic 25.0%
!! CTATCTTGAAAATGGTTTTT+GGG + chr8_3:25765211-25765230 None:intergenic 25.0%
!! TCTATCTTGAAAATGGTTTT+TGG + chr8_3:25765212-25765231 None:intergenic 25.0%
! AGATTATGAGATCTCAAAAA+TGG - chr8_3:25765426-25765445 Msa1283930:intron 25.0%
! AACCACAGTTATTCTTTATA+TGG + chr8_3:25765547-25765566 None:intergenic 25.0%
! AAAAACACTTATAAGCTCTT+TGG - chr8_3:25765797-25765816 Msa1283930:intron 25.0%
! TGAATATGAAAAGATCAATG+AGG - chr8_3:25765910-25765929 Msa1283930:intron 25.0%
! ATATTGTTGCATATGCATAT+TGG - chr8_3:25766123-25766142 Msa1283930:CDS 25.0%
! ATAAGAAAGAAACAAGTACA+TGG - chr8_3:25765109-25765128 Msa1283930:CDS 25.0%
! TGGGAAGAAAAAAAAAATCA+GGG + chr8_3:25765192-25765211 None:intergenic 25.0%
! TTGGGAAGAAAAAAAAAATC+AGG + chr8_3:25765193-25765212 None:intergenic 25.0%
!! CTATCTTGAAAATGGTTTTT+GGG + chr8_3:25765211-25765230 None:intergenic 25.0%
!! TCTATCTTGAAAATGGTTTT+TGG + chr8_3:25765212-25765231 None:intergenic 25.0%
! AGATTATGAGATCTCAAAAA+TGG - chr8_3:25765426-25765445 Msa1283930:intron 25.0%
! AACCACAGTTATTCTTTATA+TGG + chr8_3:25765547-25765566 None:intergenic 25.0%
! AAAAACACTTATAAGCTCTT+TGG - chr8_3:25765797-25765816 Msa1283930:intron 25.0%
! TGAATATGAAAAGATCAATG+AGG - chr8_3:25765910-25765929 Msa1283930:intron 25.0%
! ATATTGTTGCATATGCATAT+TGG - chr8_3:25766123-25766142 Msa1283930:CDS 25.0%
TATGATGAACTCTTTCACAA+AGG + chr8_3:25764878-25764897 None:intergenic 30.0%
CATCATACAAAACTTCATGA+AGG - chr8_3:25764891-25764910 Msa1283930:three_prime_UTR 30.0%
TACATTCTACAAACCAAACA+TGG - chr8_3:25765162-25765181 Msa1283930:CDS 30.0%
GGGAAGAAAAAAAAAATCAG+GGG + chr8_3:25765191-25765210 None:intergenic 30.0%
! TGAAGCATCTATCTTGAAAA+TGG + chr8_3:25765219-25765238 None:intergenic 30.0%
AACATAGTCAAAAGTAGAAG+AGG + chr8_3:25765254-25765273 None:intergenic 30.0%
!! CTACTTTTGACTATGTTGAA+CGG - chr8_3:25765257-25765276 Msa1283930:intron 30.0%
!! TACTTTTGACTATGTTGAAC+GGG - chr8_3:25765258-25765277 Msa1283930:intron 30.0%
! TTTTTGTCATAAGGTTCTCT+GGG + chr8_3:25765314-25765333 None:intergenic 30.0%
!!! TTTTTTGTCATAAGGTTCTC+TGG + chr8_3:25765315-25765334 None:intergenic 30.0%
AGCCATATAAAGAATAACTG+TGG - chr8_3:25765542-25765561 Msa1283930:intron 30.0%
AGATATTGATGAGCACTATA+AGG - chr8_3:25765823-25765842 Msa1283930:intron 30.0%
ATCCTTGAAGTCATTGATAA+GGG - chr8_3:25765857-25765876 Msa1283930:intron 30.0%
TTATAGAGCTATCTTTGCTT+TGG + chr8_3:25766005-25766024 None:intergenic 30.0%
!! TAGTAATGGGTTATTGCATT+GGG - chr8_3:25766049-25766068 Msa1283930:CDS 30.0%
CTTCTATGTGATGTTTGTAA+TGG - chr8_3:25766146-25766165 Msa1283930:CDS 30.0%
TATGATGAACTCTTTCACAA+AGG + chr8_3:25764878-25764897 None:intergenic 30.0%
CATCATACAAAACTTCATGA+AGG - chr8_3:25764891-25764910 Msa1283930:three_prime_UTR 30.0%
TACATTCTACAAACCAAACA+TGG - chr8_3:25765162-25765181 Msa1283930:CDS 30.0%
GGGAAGAAAAAAAAAATCAG+GGG + chr8_3:25765191-25765210 None:intergenic 30.0%
! TGAAGCATCTATCTTGAAAA+TGG + chr8_3:25765219-25765238 None:intergenic 30.0%
AACATAGTCAAAAGTAGAAG+AGG + chr8_3:25765254-25765273 None:intergenic 30.0%
!! CTACTTTTGACTATGTTGAA+CGG - chr8_3:25765257-25765276 Msa1283930:intron 30.0%
!! TACTTTTGACTATGTTGAAC+GGG - chr8_3:25765258-25765277 Msa1283930:intron 30.0%
! TTTTTGTCATAAGGTTCTCT+GGG + chr8_3:25765314-25765333 None:intergenic 30.0%
!!! TTTTTTGTCATAAGGTTCTC+TGG + chr8_3:25765315-25765334 None:intergenic 30.0%
AGCCATATAAAGAATAACTG+TGG - chr8_3:25765542-25765561 Msa1283930:intron 30.0%
AGATATTGATGAGCACTATA+AGG - chr8_3:25765823-25765842 Msa1283930:intron 30.0%
ATCCTTGAAGTCATTGATAA+GGG - chr8_3:25765857-25765876 Msa1283930:intron 30.0%
TTATAGAGCTATCTTTGCTT+TGG + chr8_3:25766005-25766024 None:intergenic 30.0%
!! TAGTAATGGGTTATTGCATT+GGG - chr8_3:25766049-25766068 Msa1283930:CDS 30.0%
CTTCTATGTGATGTTTGTAA+TGG - chr8_3:25766146-25766165 Msa1283930:CDS 30.0%
! CTTCCCTTTCTTCTAAGAAA+TGG - chr8_3:25764758-25764777 Msa1283930:three_prime_UTR 35.0%
GCACCATTTCTTAGAAGAAA+GGG + chr8_3:25764764-25764783 None:intergenic 35.0%
AGCACCATTTCTTAGAAGAA+AGG + chr8_3:25764765-25764784 None:intergenic 35.0%
GAACAGATTGTAGAACTTGT+CGG + chr8_3:25764829-25764848 None:intergenic 35.0%
AACTTCATGAAGGTGAAGAT+TGG - chr8_3:25764901-25764920 Msa1283930:three_prime_UTR 35.0%
!! TGATGATTTGGTTATCGATC+AGG + chr8_3:25764992-25765011 None:intergenic 35.0%
! TTTTGTCATAAGGTTCTCTG+GGG + chr8_3:25765313-25765332 None:intergenic 35.0%
ATCTGTGAATTATGATGGCA+CGG + chr8_3:25765723-25765742 None:intergenic 35.0%
TTGCCATCTGTGAATTATGA+TGG + chr8_3:25765728-25765747 None:intergenic 35.0%
ATCATAATTCACAGATGGCA+AGG - chr8_3:25765727-25765746 Msa1283930:intron 35.0%
AACACTTATAAGCTCTTTGG+TGG - chr8_3:25765800-25765819 Msa1283930:intron 35.0%
CATCCTTGAAGTCATTGATA+AGG - chr8_3:25765856-25765875 Msa1283930:intron 35.0%
AAGTATTCCATGTAGCCATT+TGG + chr8_3:25765947-25765966 None:intergenic 35.0%
AATGGCTACATGGAATACTT+TGG - chr8_3:25765947-25765966 Msa1283930:intron 35.0%
!! CTAGTAATGGGTTATTGCAT+TGG - chr8_3:25766048-25766067 Msa1283930:CDS 35.0%
! CTTCCCTTTCTTCTAAGAAA+TGG - chr8_3:25764758-25764777 Msa1283930:three_prime_UTR 35.0%
GCACCATTTCTTAGAAGAAA+GGG + chr8_3:25764764-25764783 None:intergenic 35.0%
AGCACCATTTCTTAGAAGAA+AGG + chr8_3:25764765-25764784 None:intergenic 35.0%
GAACAGATTGTAGAACTTGT+CGG + chr8_3:25764829-25764848 None:intergenic 35.0%
AACTTCATGAAGGTGAAGAT+TGG - chr8_3:25764901-25764920 Msa1283930:three_prime_UTR 35.0%
!! TGATGATTTGGTTATCGATC+AGG + chr8_3:25764992-25765011 None:intergenic 35.0%
! TTTTGTCATAAGGTTCTCTG+GGG + chr8_3:25765313-25765332 None:intergenic 35.0%
ATCTGTGAATTATGATGGCA+CGG + chr8_3:25765723-25765742 None:intergenic 35.0%
TTGCCATCTGTGAATTATGA+TGG + chr8_3:25765728-25765747 None:intergenic 35.0%
ATCATAATTCACAGATGGCA+AGG - chr8_3:25765727-25765746 Msa1283930:intron 35.0%
AACACTTATAAGCTCTTTGG+TGG - chr8_3:25765800-25765819 Msa1283930:intron 35.0%
CATCCTTGAAGTCATTGATA+AGG - chr8_3:25765856-25765875 Msa1283930:intron 35.0%
AAGTATTCCATGTAGCCATT+TGG + chr8_3:25765947-25765966 None:intergenic 35.0%
AATGGCTACATGGAATACTT+TGG - chr8_3:25765947-25765966 Msa1283930:intron 35.0%
!! CTAGTAATGGGTTATTGCAT+TGG - chr8_3:25766048-25766067 Msa1283930:CDS 35.0%
! TTCTAAGAAATGGTGCTCTC+TGG - chr8_3:25764768-25764787 Msa1283930:three_prime_UTR 40.0%
! AGATTGGCATCACACTGATT+CGG - chr8_3:25764917-25764936 Msa1283930:three_prime_UTR 40.0%
!! ACACTGATTCGGTTAAACAC+TGG - chr8_3:25764928-25764947 Msa1283930:three_prime_UTR 40.0%
AAACACTGGACTTACGTCAT+AGG - chr8_3:25764942-25764961 Msa1283930:exon 40.0%
AAATCAGGGGTAACCATGTT+TGG + chr8_3:25765178-25765197 None:intergenic 40.0%
! ATAAGGTTCTCTGGGGAATA+TGG + chr8_3:25765306-25765325 None:intergenic 40.0%
TCTGTGAATTATGATGGCAC+GGG + chr8_3:25765722-25765741 None:intergenic 40.0%
GTGCCATCATAATTCACAGA+TGG - chr8_3:25765722-25765741 Msa1283930:intron 40.0%
CACCCTTATCAATGACTTCA+AGG + chr8_3:25765862-25765881 None:intergenic 40.0%
GAAGTCATTGATAAGGGTGA+TGG - chr8_3:25765863-25765882 Msa1283930:intron 40.0%
ATTCCATGTAGCCATTTGGA+GGG + chr8_3:25765943-25765962 None:intergenic 40.0%
TATTCCATGTAGCCATTTGG+AGG + chr8_3:25765944-25765963 None:intergenic 40.0%
!! AATGGGTTATTGCATTGGGT+TGG - chr8_3:25766053-25766072 Msa1283930:CDS 40.0%
AGTGTGATGTCTGTACATGA+CGG - chr8_3:25766173-25766192 Msa1283930:CDS 40.0%
! TTCTAAGAAATGGTGCTCTC+TGG - chr8_3:25764768-25764787 Msa1283930:three_prime_UTR 40.0%
! AGATTGGCATCACACTGATT+CGG - chr8_3:25764917-25764936 Msa1283930:three_prime_UTR 40.0%
!! ACACTGATTCGGTTAAACAC+TGG - chr8_3:25764928-25764947 Msa1283930:three_prime_UTR 40.0%
AAACACTGGACTTACGTCAT+AGG - chr8_3:25764942-25764961 Msa1283930:exon 40.0%
AAATCAGGGGTAACCATGTT+TGG + chr8_3:25765178-25765197 None:intergenic 40.0%
! ATAAGGTTCTCTGGGGAATA+TGG + chr8_3:25765306-25765325 None:intergenic 40.0%
TCTGTGAATTATGATGGCAC+GGG + chr8_3:25765722-25765741 None:intergenic 40.0%
GTGCCATCATAATTCACAGA+TGG - chr8_3:25765722-25765741 Msa1283930:intron 40.0%
CACCCTTATCAATGACTTCA+AGG + chr8_3:25765862-25765881 None:intergenic 40.0%
GAAGTCATTGATAAGGGTGA+TGG - chr8_3:25765863-25765882 Msa1283930:intron 40.0%
ATTCCATGTAGCCATTTGGA+GGG + chr8_3:25765943-25765962 None:intergenic 40.0%
TATTCCATGTAGCCATTTGG+AGG + chr8_3:25765944-25765963 None:intergenic 40.0%
!! AATGGGTTATTGCATTGGGT+TGG - chr8_3:25766053-25766072 Msa1283930:CDS 40.0%
AGTGTGATGTCTGTACATGA+CGG - chr8_3:25766173-25766192 Msa1283930:CDS 40.0%
! GGTAAGCTCAGTACTGAAGT+TGG - chr8_3:25764789-25764808 Msa1283930:three_prime_UTR 45.0%
AGATTGTAGAACTTGTCGGC+GGG + chr8_3:25764825-25764844 None:intergenic 45.0%
CAGATTGTAGAACTTGTCGG+CGG + chr8_3:25764826-25764845 None:intergenic 45.0%
GAGGATATTGACCCTCCAAA+TGG - chr8_3:25765929-25765948 Msa1283930:intron 45.0%
! GGTAAGCTCAGTACTGAAGT+TGG - chr8_3:25764789-25764808 Msa1283930:three_prime_UTR 45.0%
AGATTGTAGAACTTGTCGGC+GGG + chr8_3:25764825-25764844 None:intergenic 45.0%
CAGATTGTAGAACTTGTCGG+CGG + chr8_3:25764826-25764845 None:intergenic 45.0%
GAGGATATTGACCCTCCAAA+TGG - chr8_3:25765929-25765948 Msa1283930:intron 45.0%
!!! ATATTTTTGTATAAAAAAAA+AGG + chr8_3:25765592-25765611 None:intergenic 5.0%
!!! TTTTATACAAAAATATTTAT+TGG - chr8_3:25765596-25765615 Msa1283930:intron 5.0%
!!! ATATTTTTGTATAAAAAAAA+AGG + chr8_3:25765592-25765611 None:intergenic 5.0%
!!! TTTTATACAAAAATATTTAT+TGG - chr8_3:25765596-25765615 Msa1283930:intron 5.0%
ATGGCACTGCTGCTGCTAAA+TGG - chr8_3:25765882-25765901 Msa1283930:intron 50.0%
TGACCCTCCAAATGGCTACA+TGG - chr8_3:25765937-25765956 Msa1283930:intron 50.0%
ATGGCACTGCTGCTGCTAAA+TGG - chr8_3:25765882-25765901 Msa1283930:intron 50.0%
TGACCCTCCAAATGGCTACA+TGG - chr8_3:25765937-25765956 Msa1283930:intron 50.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 25764728 25766253 25764728 ID=Msa1283930;Name=Msa1283930
chr8_3 mRNA 25764728 25766253 25764728 ID=Msa1283930-mRNA-1;Parent=Msa1283930;Name=Msa1283930-mRNA-1;_AED=0.03;_eAED=0.03;_QI=49|1|1|1|1|1|2|229|156
chr8_3 exon 25764728 25765240 25764728 ID=Msa1283930-mRNA-1:exon:9057;Parent=Msa1283930-mRNA-1
chr8_3 exon 25766018 25766253 25766018 ID=Msa1283930-mRNA-1:exon:9056;Parent=Msa1283930-mRNA-1
chr8_3 five_prime_UTR 25766205 25766253 25766205 ID=Msa1283930-mRNA-1:five_prime_utr;Parent=Msa1283930-mRNA-1
chr8_3 CDS 25766018 25766204 25766018 ID=Msa1283930-mRNA-1:cds;Parent=Msa1283930-mRNA-1
chr8_3 CDS 25764957 25765240 25764957 ID=Msa1283930-mRNA-1:cds;Parent=Msa1283930-mRNA-1
chr8_3 three_prime_UTR 25764728 25764956 25764728 ID=Msa1283930-mRNA-1:three_prime_utr;Parent=Msa1283930-mRNA-1
Gene Sequence

>Msa1283930

ATGGTGCTCTCTGGTAAGCTCAGTACTGAAGTTGGAATCAAAACACCCGCCGACAAGTTCTACAATCTGTTCATAACAGAACTTCATGAAGTGCAAAACCTTTGTGAAAGAGTTCATCATACAAAACTTCATGAAGGTGAAGATTGGCATCACACTGATTCGGTTAAACACTGGACTTACGTCATAGATGGCAAGGTACATACATGTCACGAGAGAGTTGAAGAAGTTGATGAACTGAATAAAAAAAACACTTATAAGCTCTTTGGTGGAGATATTGATGAGCACTATAAGGTCTTTAAGCTCATCCTTGAAGTCATTGATAAGGGTGATGGCACTGCTGCTGCTAAATGGACAGTTGAATATGAAAAGATCAATGAGGATATTGACCCTCCAAATGGCTACATGGAATACTTTGGCAAAATCACTAGAGATGTTGATGCTCATCTTGCCAAAGCAAAGATAGCTCTATAA

Protein sequence

>Msa1283930

MVLSGKLSTEVGIKTPADKFYNLFITELHEVQNLCERVHHTKLHEGEDWHHTDSVKHWTYVIDGKVHTCHERVEEVDELNKKNTYKLFGGDIDEHYKVFKLILEVIDKGDGTAAAKWTVEYEKINEDIDPPNGYMEYFGKITRDVDAHLAKAKIAL*