Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1326710 | sp|Q9SSK5|MLP43_ARATH | 33.108 | 148 | 84 | 3 | 3 | 135 | 7 | 154 | 1.62e-17 | 77.0 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1326710 | G7L7T5 | 82.051 | 156 | 14 | 1 | 1 | 142 | 1 | 156 | 1.73e-84 | 253 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0028690 | Msa1326710 | 0.800950 | 1.133015e-48 | -8.615850e-47 |
Msa0033220 | Msa1326710 | 0.830465 | 2.893097e-55 | -8.615850e-47 |
Msa0044160 | Msa1326710 | 0.809573 | 1.770416e-50 | -8.615850e-47 |
Msa0045810 | Msa1326710 | 0.819789 | 9.659890e-53 | -8.615850e-47 |
Msa0046200 | Msa1326710 | 0.801914 | 7.190163e-49 | -8.615850e-47 |
Msa0060410 | Msa1326710 | 0.833596 | 4.868978e-56 | -8.615850e-47 |
Msa0072180 | Msa1326710 | 0.802805 | 4.712557e-49 | -8.615850e-47 |
Msa0073110 | Msa1326710 | 0.800084 | 1.701453e-48 | -8.615850e-47 |
Msa0077570 | Msa1326710 | -0.825309 | 5.029821e-54 | -8.615850e-47 |
Msa0079880 | Msa1326710 | 0.825053 | 5.780767e-54 | -8.615850e-47 |
Msa0080030 | Msa1326710 | 0.822359 | 2.471037e-53 | -8.615850e-47 |
Msa0610690 | Msa1326710 | 0.811169 | 8.009945e-51 | -8.615850e-47 |
Msa0643230 | Msa1326710 | 0.803014 | 4.267624e-49 | -8.615850e-47 |
Msa0657710 | Msa1326710 | 0.902760 | 6.973579e-79 | -8.615850e-47 |
Msa0657720 | Msa1326710 | 0.873226 | 1.732350e-67 | -8.615850e-47 |
Msa0658150 | Msa1326710 | 0.809400 | 1.927804e-50 | -8.615850e-47 |
Msa0702790 | Msa1326710 | 0.876586 | 1.241055e-68 | -8.615850e-47 |
Msa0702800 | Msa1326710 | 0.901208 | 3.379503e-78 | -8.615850e-47 |
Msa0703000 | Msa1326710 | 0.811616 | 6.405717e-51 | -8.615850e-47 |
Msa0703950 | Msa1326710 | 0.801137 | 1.037825e-48 | -8.615850e-47 |
Msa0722890 | Msa1326710 | 0.838099 | 3.515308e-57 | -8.615850e-47 |
Msa0723090 | Msa1326710 | 0.857763 | 1.307366e-62 | -8.615850e-47 |
Msa0742370 | Msa1326710 | -0.820242 | 7.608147e-53 | -8.615850e-47 |
Msa0810330 | Msa1326710 | 0.810348 | 1.205665e-50 | -8.615850e-47 |
Msa0812720 | Msa1326710 | 0.805089 | 1.579739e-49 | -8.615850e-47 |
Msa0819310 | Msa1326710 | 0.816405 | 5.625296e-52 | -8.615850e-47 |
Msa0828950 | Msa1326710 | 0.872094 | 4.140832e-67 | -8.615850e-47 |
Msa0828960 | Msa1326710 | 0.899778 | 1.415106e-77 | -8.615850e-47 |
Msa0842330 | Msa1326710 | 0.802790 | 4.747247e-49 | -8.615850e-47 |
Msa0139500 | Msa1326710 | 0.812181 | 4.824428e-51 | -8.615850e-47 |
Msa0165640 | Msa1326710 | 0.830027 | 3.701210e-55 | -8.615850e-47 |
Msa0166190 | Msa1326710 | 0.804931 | 1.704814e-49 | -8.615850e-47 |
Msa0183710 | Msa1326710 | 0.813180 | 2.916911e-51 | -8.615850e-47 |
Msa0198990 | Msa1326710 | 0.801095 | 1.058156e-48 | -8.615850e-47 |
Msa0203080 | Msa1326710 | 0.828106 | 1.081212e-54 | -8.615850e-47 |
Msa0206370 | Msa1326710 | 0.800556 | 1.363678e-48 | -8.615850e-47 |
Msa0224870 | Msa1326710 | 0.803096 | 4.103471e-49 | -8.615850e-47 |
Msa1242130 | Msa1326710 | 0.878390 | 2.919636e-69 | -8.615850e-47 |
Msa1242160 | Msa1326710 | 0.945610 | 2.213304e-104 | -8.615850e-47 |
Msa1246830 | Msa1326710 | 0.818837 | 1.590959e-52 | -8.615850e-47 |
Msa1250610 | Msa1326710 | 0.904407 | 1.267947e-79 | -8.615850e-47 |
Msa1250660 | Msa1326710 | 0.838197 | 3.317381e-57 | -8.615850e-47 |
Msa1255210 | Msa1326710 | 0.829730 | 4.371927e-55 | -8.615850e-47 |
Msa1268360 | Msa1326710 | 0.809669 | 1.687975e-50 | -8.615850e-47 |
Msa1273320 | Msa1326710 | 0.800257 | 1.568921e-48 | -8.615850e-47 |
Msa1283930 | Msa1326710 | 0.957449 | 2.642670e-115 | -8.615850e-47 |
Msa1283960 | Msa1326710 | 0.900861 | 4.795739e-78 | -8.615850e-47 |
Msa1283980 | Msa1326710 | 0.816459 | 5.470474e-52 | -8.615850e-47 |
Msa1284000 | Msa1326710 | 0.831988 | 1.221682e-55 | -8.615850e-47 |
Msa1284020 | Msa1326710 | 0.848214 | 7.066944e-60 | -8.615850e-47 |
Msa1288070 | Msa1326710 | 0.816636 | 4.991974e-52 | -8.615850e-47 |
Msa1295650 | Msa1326710 | 0.834624 | 2.691774e-56 | -8.615850e-47 |
Msa1322960 | Msa1326710 | 0.954389 | 3.302839e-112 | -8.615850e-47 |
Msa1322980 | Msa1326710 | 0.828640 | 8.033119e-55 | -8.615850e-47 |
Msa1323070 | Msa1326710 | 0.839031 | 2.020147e-57 | -8.615850e-47 |
Msa1326640 | Msa1326710 | 0.884858 | 1.338288e-71 | -8.615850e-47 |
Msa1326680 | Msa1326710 | 0.902264 | 1.157380e-78 | -8.615850e-47 |
Msa1326710 | Msa1331570 | -0.822575 | 2.201326e-53 | -8.615850e-47 |
Msa1326710 | Msa1348170 | -0.815968 | 7.042473e-52 | -8.615850e-47 |
Msa1326710 | Msa1366140 | -0.815596 | 8.525065e-52 | -8.615850e-47 |
Msa1326710 | Msa1368390 | 0.809367 | 1.959502e-50 | -8.615850e-47 |
Msa1326710 | Msa1381010 | 0.810239 | 1.272569e-50 | -8.615850e-47 |
Msa1326710 | Msa1385260 | 0.814161 | 1.774207e-51 | -8.615850e-47 |
Msa1326710 | Msa1387450 | -0.818246 | 2.166603e-52 | -8.615850e-47 |
Msa1326710 | Msa1395080 | 0.812003 | 5.275602e-51 | -8.615850e-47 |
Msa1326710 | Msa1407810 | 0.845382 | 4.204945e-59 | -8.615850e-47 |
Msa1326710 | Msa1410160 | 0.812872 | 3.406829e-51 | -8.615850e-47 |
Msa1326710 | Msa1413130 | 0.824267 | 8.854379e-54 | -8.615850e-47 |
Msa1326710 | Msa1422860 | 0.852624 | 4.085254e-61 | -8.615850e-47 |
Msa1326710 | Msa1433360 | 0.874663 | 5.665743e-68 | -8.615850e-47 |
Msa1326710 | Msa1437780 | 0.846420 | 2.196641e-59 | -8.615850e-47 |
Msa1326710 | Msa1437810 | 0.800386 | 1.477100e-48 | -8.615850e-47 |
Msa1326710 | Msa1439250 | 0.833343 | 5.632251e-56 | -8.615850e-47 |
Msa1326710 | Msa1439270 | 0.810420 | 1.162756e-50 | -8.615850e-47 |
Msa1326710 | Msa1445530 | 0.952972 | 7.606373e-111 | -8.615850e-47 |
Msa1326710 | Msa1447100 | 0.816315 | 5.893208e-52 | -8.615850e-47 |
Msa1326710 | Msa1449900 | 0.803529 | 3.337011e-49 | -8.615850e-47 |
Msa1326710 | Msa1454500 | 0.808186 | 3.504860e-50 | -8.615850e-47 |
Msa0365210 | Msa1326710 | 0.802442 | 5.599717e-49 | -8.615850e-47 |
Msa0375330 | Msa1326710 | -0.813863 | 2.064097e-51 | -8.615850e-47 |
Msa0375790 | Msa1326710 | 0.802929 | 4.442195e-49 | -8.615850e-47 |
Msa0386560 | Msa1326710 | 0.809326 | 1.999732e-50 | -8.615850e-47 |
Msa0386880 | Msa1326710 | 0.803207 | 3.892325e-49 | -8.615850e-47 |
Msa0402070 | Msa1326710 | -0.811577 | 6.530089e-51 | -8.615850e-47 |
Msa0437440 | Msa1326710 | -0.805263 | 1.452311e-49 | -8.615850e-47 |
Msa0437520 | Msa1326710 | 0.813951 | 1.973268e-51 | -8.615850e-47 |
Msa0480900 | Msa1326710 | -0.812304 | 4.534574e-51 | -8.615850e-47 |
Msa1015360 | Msa1326710 | 0.811484 | 6.842385e-51 | -8.615850e-47 |
Msa1019420 | Msa1326710 | 0.828098 | 1.085832e-54 | -8.615850e-47 |
Msa1022420 | Msa1326710 | 0.823309 | 1.484341e-53 | -8.615850e-47 |
Msa1029820 | Msa1326710 | 0.807423 | 5.091937e-50 | -8.615850e-47 |
Msa1041060 | Msa1326710 | 0.810953 | 8.921080e-51 | -8.615850e-47 |
Msa1042300 | Msa1326710 | 0.802101 | 6.580838e-49 | -8.615850e-47 |
Msa1044250 | Msa1326710 | 0.855447 | 6.271070e-62 | -8.615850e-47 |
Msa1068940 | Msa1326710 | 0.805928 | 1.053520e-49 | -8.615850e-47 |
Msa1082410 | Msa1326710 | 0.808328 | 3.268766e-50 | -8.615850e-47 |
Msa1102060 | Msa1326710 | -0.823779 | 1.152530e-53 | -8.615850e-47 |
Msa1106590 | Msa1326710 | 0.831591 | 1.530329e-55 | -8.615850e-47 |
Msa0241750 | Msa1326710 | 0.819894 | 9.138274e-53 | -8.615850e-47 |
Msa0246210 | Msa1326710 | 0.826124 | 3.221642e-54 | -8.615850e-47 |
Msa0246930 | Msa1326710 | 0.803873 | 2.831411e-49 | -8.615850e-47 |
Msa0269220 | Msa1326710 | -0.815772 | 7.789614e-52 | -8.615850e-47 |
Msa0284800 | Msa1326710 | 0.854154 | 1.486683e-61 | -8.615850e-47 |
Msa0285420 | Msa1326710 | 0.810746 | 9.888619e-51 | -8.615850e-47 |
Msa0313900 | Msa1326710 | 0.819711 | 1.006293e-52 | -8.615850e-47 |
Msa0318490 | Msa1326710 | 0.803947 | 2.733770e-49 | -8.615850e-47 |
Msa0330520 | Msa1326710 | 0.843746 | 1.158864e-58 | -8.615850e-47 |
Msa0334660 | Msa1326710 | 0.836435 | 9.373891e-57 | -8.615850e-47 |
Msa0343210 | Msa1326710 | 0.816010 | 6.892389e-52 | -8.615850e-47 |
Msa0356270 | Msa1326710 | 0.800335 | 1.512785e-48 | -8.615850e-47 |
Msa0358300 | Msa1326710 | 0.836447 | 9.308536e-57 | -8.615850e-47 |
Msa1111910 | Msa1326710 | 0.822426 | 2.384026e-53 | -8.615850e-47 |
Msa1133750 | Msa1326710 | 0.831587 | 1.534232e-55 | -8.615850e-47 |
Msa1149910 | Msa1326710 | 0.820268 | 7.503251e-53 | -8.615850e-47 |
Msa1154320 | Msa1326710 | 0.847287 | 1.272166e-59 | -8.615850e-47 |
Msa1156710 | Msa1326710 | 0.804108 | 2.530258e-49 | -8.615850e-47 |
Msa1184680 | Msa1326710 | 0.806456 | 8.152522e-50 | -8.615850e-47 |
Msa1192360 | Msa1326710 | 0.829191 | 5.910525e-55 | -8.615850e-47 |
Msa1202800 | Msa1326710 | 0.837329 | 5.543489e-57 | -8.615850e-47 |
Msa1203650 | Msa1326710 | 0.810917 | 9.081872e-51 | -8.615850e-47 |
Msa1207920 | Msa1326710 | -0.802020 | 6.839144e-49 | -8.615850e-47 |
Msa0523550 | Msa1326710 | 0.810020 | 1.418646e-50 | -8.615850e-47 |
Msa0540640 | Msa1326710 | 0.819609 | 1.061449e-52 | -8.615850e-47 |
Msa0566280 | Msa1326710 | 0.818447 | 1.950648e-52 | -8.615850e-47 |
Msa0567330 | Msa1326710 | 0.848327 | 6.578743e-60 | -8.615850e-47 |
Msa0567570 | Msa1326710 | 0.826483 | 2.646143e-54 | -8.615850e-47 |
Msa0576320 | Msa1326710 | 0.832848 | 7.477330e-56 | -8.615850e-47 |
Msa0590620 | Msa1326710 | -0.803374 | 3.593508e-49 | -8.615850e-47 |
Msa0862480 | Msa1326710 | -0.807254 | 5.528285e-50 | -8.615850e-47 |
Msa0880910 | Msa1326710 | 0.815084 | 1.108213e-51 | -8.615850e-47 |
Msa0882780 | Msa1326710 | 0.806896 | 6.582231e-50 | -8.615850e-47 |
Msa0908270 | Msa1326710 | -0.801570 | 8.458403e-49 | -8.615850e-47 |
Msa0909260 | Msa1326710 | 0.939746 | 7.568047e-100 | -8.615850e-47 |
Msa0931680 | Msa1326710 | 0.806024 | 1.005250e-49 | -8.615850e-47 |
Msa0967780 | Msa1326710 | 0.827308 | 1.681231e-54 | -8.615850e-47 |
Msa0968180 | Msa1326710 | 0.812513 | 4.082807e-51 | -8.615850e-47 |
Msa0972680 | Msa1326710 | 0.823408 | 1.407968e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1326710 | MtrunA17_Chr8g0355721 | 82.051 | 156 | 14 | 1 | 1 | 142 | 1 | 156 | 3.33e-88 | 253 |
Msa1326710 | MtrunA17_Chr8g0355741 | 71.338 | 157 | 30 | 2 | 1 | 142 | 1 | 157 | 6.44e-76 | 222 |
Msa1326710 | MtrunA17_Chr8g0355781 | 69.737 | 152 | 32 | 2 | 1 | 138 | 1 | 152 | 5.21e-72 | 212 |
Msa1326710 | MtrunA17_Chr8g0355661 | 68.790 | 157 | 33 | 3 | 1 | 142 | 1 | 156 | 1.54e-71 | 211 |
Msa1326710 | MtrunA17_Chr8g0355761 | 67.105 | 152 | 36 | 2 | 1 | 138 | 1 | 152 | 3.56e-67 | 200 |
Msa1326710 | MtrunA17_Chr8g0355811 | 64.052 | 153 | 40 | 2 | 1 | 139 | 1 | 152 | 2.34e-66 | 198 |
Msa1326710 | MtrunA17_Chr8g0355641 | 63.462 | 156 | 42 | 3 | 1 | 141 | 1 | 156 | 1.72e-65 | 196 |
Msa1326710 | MtrunA17_Chr8g0355821 | 60.784 | 153 | 45 | 2 | 1 | 139 | 1 | 152 | 8.63e-63 | 189 |
Msa1326710 | MtrunA17_Chr8g0355801 | 60.784 | 153 | 45 | 2 | 1 | 139 | 1 | 152 | 2.72e-61 | 185 |
Msa1326710 | MtrunA17_Chr8g0355791 | 60.131 | 153 | 46 | 2 | 1 | 139 | 1 | 152 | 1.12e-60 | 184 |
Msa1326710 | MtrunA17_Chr8g0355771 | 59.477 | 153 | 47 | 2 | 1 | 139 | 1 | 152 | 1.58e-59 | 181 |
Msa1326710 | MtrunA17_Chr1g0160381 | 36.184 | 152 | 82 | 2 | 1 | 137 | 5 | 156 | 1.29e-30 | 107 |
Msa1326710 | MtrunA17_Chr1g0160371 | 37.500 | 152 | 80 | 2 | 1 | 137 | 1 | 152 | 2.73e-30 | 107 |
Msa1326710 | MtrunA17_Chr1g0160351 | 45.652 | 92 | 48 | 1 | 48 | 137 | 2 | 93 | 9.01e-23 | 85.9 |
Msa1326710 | MtrunA17_Chr8g0339261 | 31.724 | 145 | 84 | 3 | 6 | 136 | 8 | 151 | 9.74e-21 | 82.4 |
Msa1326710 | MtrunA17_Chr1g0160391 | 32.903 | 155 | 84 | 4 | 1 | 135 | 1 | 155 | 1.63e-20 | 82.0 |
Msa1326710 | MtrunA17_Chr1g0160801 | 33.333 | 147 | 77 | 5 | 7 | 138 | 7 | 147 | 3.43e-17 | 73.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1326710 | AT1G70870.1 | 35.252 | 139 | 87 | 2 | 1 | 137 | 1 | 138 | 2.98e-21 | 83.6 |
Msa1326710 | AT5G28010.1 | 31.757 | 148 | 86 | 3 | 3 | 135 | 15 | 162 | 1.36e-18 | 77.4 |
Msa1326710 | AT5G28010.2 | 31.757 | 148 | 86 | 3 | 3 | 135 | 15 | 162 | 1.36e-18 | 77.4 |
Msa1326710 | AT1G70890.1 | 33.108 | 148 | 84 | 3 | 3 | 135 | 7 | 154 | 1.65e-18 | 77.0 |
Msa1326710 | AT1G23120.1 | 29.496 | 139 | 87 | 2 | 7 | 135 | 7 | 144 | 1.21e-16 | 72.0 |
Msa1326710 | AT1G23120.2 | 29.496 | 139 | 87 | 2 | 7 | 135 | 57 | 194 | 2.94e-16 | 72.4 |
Msa1326710 | AT1G70830.5 | 30.405 | 148 | 88 | 3 | 3 | 135 | 22 | 169 | 6.66e-16 | 70.9 |
Msa1326710 | AT1G70830.3 | 30.405 | 148 | 88 | 3 | 3 | 135 | 22 | 169 | 1.31e-15 | 70.5 |
Msa1326710 | AT1G70830.2 | 30.405 | 148 | 88 | 3 | 3 | 135 | 22 | 169 | 3.28e-15 | 70.5 |
Msa1326710 | AT1G24020.1 | 31.875 | 160 | 85 | 4 | 1 | 141 | 1 | 155 | 4.20e-15 | 68.2 |
Msa1326710 | AT1G24020.2 | 31.875 | 160 | 85 | 4 | 1 | 141 | 1 | 155 | 4.20e-15 | 68.2 |
Msa1326710 | AT1G70840.1 | 28.378 | 148 | 91 | 3 | 3 | 135 | 20 | 167 | 4.69e-15 | 68.6 |
Msa1326710 | AT1G70830.1 | 30.405 | 148 | 88 | 3 | 3 | 135 | 22 | 169 | 5.06e-15 | 70.9 |
Msa1326710 | AT1G70830.1 | 29.054 | 148 | 90 | 3 | 3 | 135 | 184 | 331 | 4.17e-13 | 65.5 |
Msa1326710 | AT1G70880.1 | 27.027 | 148 | 93 | 3 | 3 | 135 | 8 | 155 | 8.71e-15 | 67.4 |
Msa1326710 | AT4G23670.1 | 32.237 | 152 | 88 | 4 | 1 | 138 | 1 | 151 | 1.24e-14 | 67.0 |
Msa1326710 | AT5G28000.1 | 28.378 | 148 | 91 | 3 | 3 | 135 | 13 | 160 | 5.35e-14 | 65.5 |
Msa1326710 | AT1G70850.2 | 28.378 | 148 | 91 | 3 | 3 | 135 | 9 | 156 | 1.25e-13 | 65.9 |
Msa1326710 | AT1G70850.3 | 28.378 | 148 | 91 | 3 | 3 | 135 | 9 | 156 | 2.11e-13 | 65.9 |
Msa1326710 | AT1G70850.3 | 28.261 | 138 | 84 | 3 | 13 | 135 | 175 | 312 | 2.98e-12 | 62.8 |
Msa1326710 | AT1G70850.1 | 28.378 | 148 | 91 | 3 | 3 | 135 | 9 | 156 | 2.11e-13 | 65.9 |
Msa1326710 | AT1G70850.1 | 28.261 | 138 | 84 | 3 | 13 | 135 | 175 | 312 | 2.98e-12 | 62.8 |
Msa1326710 | AT1G70830.4 | 29.054 | 148 | 90 | 3 | 3 | 135 | 137 | 284 | 2.29e-13 | 65.9 |
Msa1326710 | AT2G01520.1 | 29.605 | 152 | 92 | 4 | 1 | 138 | 1 | 151 | 6.47e-12 | 59.7 |
Msa1326710 | AT4G23680.1 | 29.605 | 152 | 92 | 4 | 1 | 138 | 1 | 151 | 1.22e-11 | 58.9 |
Msa1326710 | AT1G35260.1 | 23.810 | 147 | 90 | 3 | 7 | 135 | 6 | 148 | 7.86e-11 | 57.0 |
Find 33 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGGCACTGCTGCTGCTAAA+TGG | 0.310932 | 8_4:+41324833 | Msa1326710:CDS |
TATGTGATGAAATCAATAAA+TGG | 0.369456 | 8_4:+41325165 | Msa1326710:three_prime_UTR |
CACCCTTATCAATGACTTCA+AGG | 0.380806 | 8_4:-41324810 | None:intergenic |
TTATAGAGCTATCTTTGCTT+TGG | 0.392094 | 8_4:-41324953 | None:intergenic |
AATTAGTGTGATATTTGTAA+TGG | 0.409729 | 8_4:+41325050 | Msa1326710:three_prime_UTR |
ATATTGTTGCATATGCATAT+TGG | 0.412178 | 8_4:+41325074 | Msa1326710:three_prime_UTR |
TAGTAATGGGTTATTGCATT+GGG | 0.416848 | 8_4:+41325000 | Msa1326710:three_prime_UTR |
TGTAACAAATAACTAGTAAT+GGG | 0.422186 | 8_4:+41324987 | Msa1326710:three_prime_UTR |
TTCTAAGAAATGGTGCTCTC+TGG | 0.436928 | 8_4:+41323721 | None:intergenic |
CATCCTTGAAGTCATTGATA+AGG | 0.445764 | 8_4:+41324807 | Msa1326710:CDS |
AAGTATTCCATGTAGCCATT+TGG | 0.448595 | 8_4:-41324895 | None:intergenic |
CTTCTATGTGATGTTTGTAA+TGG | 0.450639 | 8_4:+41325097 | Msa1326710:three_prime_UTR |
CTAGTAATGGGTTATTGCAT+TGG | 0.451009 | 8_4:+41324999 | Msa1326710:three_prime_UTR |
AACACTTATAAGCTCTTTGG+TGG | 0.457999 | 8_4:+41324751 | Msa1326710:CDS |
AAACTTCATGAAGTGAAGAT+TGG | 0.458959 | 8_4:+41323853 | Msa1326710:CDS |
ATGTAACAAATAACTAGTAA+TGG | 0.468583 | 8_4:+41324986 | Msa1326710:three_prime_UTR |
GGTAAGCTCAGTACTGAAGT+TGG | 0.490802 | 8_4:+41323742 | Msa1326710:CDS |
AATGGGTTATTGCATTGGGT+TGG | 0.493837 | 8_4:+41325004 | Msa1326710:three_prime_UTR |
ATCCTTGAAGTCATTGATAA+GGG | 0.494628 | 8_4:+41324808 | Msa1326710:CDS |
AGATATTGATGAGCACTATA+AGG | 0.500590 | 8_4:+41324774 | Msa1326710:CDS |
GAACAGATTGTAGAACTTGT+CGG | 0.501167 | 8_4:-41323779 | None:intergenic |
TATTCCATGTAGCCATTTGG+AGG | 0.517921 | 8_4:-41324892 | None:intergenic |
AATGGCTACATGGAATACTT+TGG | 0.525683 | 8_4:+41324898 | Msa1326710:CDS |
TGACCCTCCAAATGGCTACA+TGG | 0.526835 | 8_4:+41324888 | Msa1326710:CDS |
GAGGATATTGACCCTCCAAA+TGG | 0.540200 | 8_4:+41324880 | Msa1326710:CDS |
TATGATGAACTCTTTCACAA+AGG | 0.552779 | 8_4:-41323828 | None:intergenic |
GAAGTCATTGATAAGGGTGA+TGG | 0.579318 | 8_4:+41324814 | Msa1326710:CDS |
ATCATAATTCACAGATGGCA+AGG | 0.582682 | 8_4:+41324678 | Msa1326710:intron |
ATTCCATGTAGCCATTTGGA+GGG | 0.625101 | 8_4:-41324891 | None:intergenic |
AGATTGTAGAACTTGTCGGC+GGG | 0.646397 | 8_4:-41323775 | None:intergenic |
TGAATATGAAAAGATCAATG+AGG | 0.667026 | 8_4:+41324861 | Msa1326710:CDS |
CAGATTGTAGAACTTGTCGG+CGG | 0.688816 | 8_4:-41323776 | None:intergenic |
AGTGTGATGTCTGTACATGA+CGG | 0.731855 | 8_4:+41325124 | Msa1326710:three_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGGAATAATAAATATTTATA+AGG | - | chr8_4:41324524-41324543 | None:intergenic | 10.0% |
!!! | ATAGTTTATTTGTTAAAAAA+TGG | + | chr8_4:41324588-41324607 | Msa1326710:intron | 10.0% |
!!! | TAGTTTATTTGTTAAAAAAT+GGG | + | chr8_4:41324589-41324608 | Msa1326710:intron | 10.0% |
!! | AGGAATAATAAATATTTATA+AGG | - | chr8_4:41324524-41324543 | None:intergenic | 10.0% |
!!! | ATAGTTTATTTGTTAAAAAA+TGG | + | chr8_4:41324588-41324607 | Msa1326710:intron | 10.0% |
!!! | TAGTTTATTTGTTAAAAAAT+GGG | + | chr8_4:41324589-41324608 | Msa1326710:intron | 10.0% |
!! | AATTAAATAAGATGATGATT+TGG | - | chr8_4:41323956-41323975 | None:intergenic | 15.0% |
!! | AAAAAAAATCAACAATCATT+TGG | + | chr8_4:41324279-41324298 | Msa1326710:intron | 15.0% |
!! | AAAAAAATCAACAATCATTT+GGG | + | chr8_4:41324280-41324299 | Msa1326710:intron | 15.0% |
!! | TACAAATAAAAATGAAACTT+TGG | - | chr8_4:41324643-41324662 | None:intergenic | 15.0% |
!! | AATTAAATAAGATGATGATT+TGG | - | chr8_4:41323956-41323975 | None:intergenic | 15.0% |
!! | AAAAAAAATCAACAATCATT+TGG | + | chr8_4:41324279-41324298 | Msa1326710:intron | 15.0% |
!! | AAAAAAATCAACAATCATTT+GGG | + | chr8_4:41324280-41324299 | Msa1326710:intron | 15.0% |
!! | TACAAATAAAAATGAAACTT+TGG | - | chr8_4:41324643-41324662 | None:intergenic | 15.0% |
!!! | TGTTGATTTTTTTTGTCATA+AGG | - | chr8_4:41324273-41324292 | None:intergenic | 20.0% |
!! | ATTATGAGATCTCAAAAAAA+TGG | + | chr8_4:41324378-41324397 | Msa1326710:intron | 20.0% |
!! | ATGTAACAAATAACTAGTAA+TGG | + | chr8_4:41324986-41325005 | Msa1326710:three_prime_UTR | 20.0% |
!! | TGTAACAAATAACTAGTAAT+GGG | + | chr8_4:41324987-41325006 | Msa1326710:three_prime_UTR | 20.0% |
!! | AATTAGTGTGATATTTGTAA+TGG | + | chr8_4:41325050-41325069 | Msa1326710:three_prime_UTR | 20.0% |
!! | TATGTGATGAAATCAATAAA+TGG | + | chr8_4:41325165-41325184 | Msa1326710:three_prime_UTR | 20.0% |
!!! | TGTTGATTTTTTTTGTCATA+AGG | - | chr8_4:41324273-41324292 | None:intergenic | 20.0% |
!! | ATTATGAGATCTCAAAAAAA+TGG | + | chr8_4:41324378-41324397 | Msa1326710:intron | 20.0% |
!! | ATGTAACAAATAACTAGTAA+TGG | + | chr8_4:41324986-41325005 | Msa1326710:three_prime_UTR | 20.0% |
!! | TGTAACAAATAACTAGTAAT+GGG | + | chr8_4:41324987-41325006 | Msa1326710:three_prime_UTR | 20.0% |
!! | AATTAGTGTGATATTTGTAA+TGG | + | chr8_4:41325050-41325069 | Msa1326710:three_prime_UTR | 20.0% |
!! | TATGTGATGAAATCAATAAA+TGG | + | chr8_4:41325165-41325184 | Msa1326710:three_prime_UTR | 20.0% |
! | ATAAGAAAGAAACAAGTACA+TGG | + | chr8_4:41324062-41324081 | Msa1326710:intron | 25.0% |
! | TTGGGAAGAAAAAAAAATCA+GGG | - | chr8_4:41324144-41324163 | None:intergenic | 25.0% |
! | TTTGGGAAGAAAAAAAAATC+AGG | - | chr8_4:41324145-41324164 | None:intergenic | 25.0% |
!! | CTATCTTGAAAATGGTTTTT+GGG | - | chr8_4:41324162-41324181 | None:intergenic | 25.0% |
!! | TCTATCTTGAAAATGGTTTT+TGG | - | chr8_4:41324163-41324182 | None:intergenic | 25.0% |
! | AACCACAGTTATTCTTTATA+TGG | - | chr8_4:41324499-41324518 | None:intergenic | 25.0% |
! | AAAAACACTTATAAGCTCTT+TGG | + | chr8_4:41324748-41324767 | Msa1326710:CDS | 25.0% |
! | TGAATATGAAAAGATCAATG+AGG | + | chr8_4:41324861-41324880 | Msa1326710:CDS | 25.0% |
! | ATATTGTTGCATATGCATAT+TGG | + | chr8_4:41325074-41325093 | Msa1326710:three_prime_UTR | 25.0% |
! | ATAAGAAAGAAACAAGTACA+TGG | + | chr8_4:41324062-41324081 | Msa1326710:intron | 25.0% |
! | TTGGGAAGAAAAAAAAATCA+GGG | - | chr8_4:41324144-41324163 | None:intergenic | 25.0% |
! | TTTGGGAAGAAAAAAAAATC+AGG | - | chr8_4:41324145-41324164 | None:intergenic | 25.0% |
!! | CTATCTTGAAAATGGTTTTT+GGG | - | chr8_4:41324162-41324181 | None:intergenic | 25.0% |
!! | TCTATCTTGAAAATGGTTTT+TGG | - | chr8_4:41324163-41324182 | None:intergenic | 25.0% |
! | AACCACAGTTATTCTTTATA+TGG | - | chr8_4:41324499-41324518 | None:intergenic | 25.0% |
! | AAAAACACTTATAAGCTCTT+TGG | + | chr8_4:41324748-41324767 | Msa1326710:CDS | 25.0% |
! | TGAATATGAAAAGATCAATG+AGG | + | chr8_4:41324861-41324880 | Msa1326710:CDS | 25.0% |
! | ATATTGTTGCATATGCATAT+TGG | + | chr8_4:41325074-41325093 | Msa1326710:three_prime_UTR | 25.0% |
TATGATGAACTCTTTCACAA+AGG | - | chr8_4:41323831-41323850 | None:intergenic | 30.0% | |
AAACTTCATGAAGTGAAGAT+TGG | + | chr8_4:41323853-41323872 | Msa1326710:CDS | 30.0% | |
TACATTCTACAAACCAAACA+TGG | + | chr8_4:41324114-41324133 | Msa1326710:intron | 30.0% | |
TGGGAAGAAAAAAAAATCAG+GGG | - | chr8_4:41324143-41324162 | None:intergenic | 30.0% | |
! | TGAAGCATCTATCTTGAAAA+TGG | - | chr8_4:41324170-41324189 | None:intergenic | 30.0% |
AACATAGTCAAAAGTAGAAG+AGG | - | chr8_4:41324205-41324224 | None:intergenic | 30.0% | |
!! | CTACTTTTGACTATGTTGAA+CGG | + | chr8_4:41324208-41324227 | Msa1326710:intron | 30.0% |
!! | TACTTTTGACTATGTTGAAC+GGG | + | chr8_4:41324209-41324228 | Msa1326710:intron | 30.0% |
! | TTTTTGTCATAAGGTTCTCT+GGG | - | chr8_4:41324264-41324283 | None:intergenic | 30.0% |
!!! | TTTTTTGTCATAAGGTTCTC+TGG | - | chr8_4:41324265-41324284 | None:intergenic | 30.0% |
AGCCATATAAAGAATAACTG+TGG | + | chr8_4:41324494-41324513 | Msa1326710:intron | 30.0% | |
AGATATTGATGAGCACTATA+AGG | + | chr8_4:41324774-41324793 | Msa1326710:CDS | 30.0% | |
ATCCTTGAAGTCATTGATAA+GGG | + | chr8_4:41324808-41324827 | Msa1326710:CDS | 30.0% | |
TTATAGAGCTATCTTTGCTT+TGG | - | chr8_4:41324956-41324975 | None:intergenic | 30.0% | |
!! | TAGTAATGGGTTATTGCATT+GGG | + | chr8_4:41325000-41325019 | Msa1326710:three_prime_UTR | 30.0% |
CTTCTATGTGATGTTTGTAA+TGG | + | chr8_4:41325097-41325116 | Msa1326710:three_prime_UTR | 30.0% | |
TATGATGAACTCTTTCACAA+AGG | - | chr8_4:41323831-41323850 | None:intergenic | 30.0% | |
AAACTTCATGAAGTGAAGAT+TGG | + | chr8_4:41323853-41323872 | Msa1326710:CDS | 30.0% | |
TACATTCTACAAACCAAACA+TGG | + | chr8_4:41324114-41324133 | Msa1326710:intron | 30.0% | |
TGGGAAGAAAAAAAAATCAG+GGG | - | chr8_4:41324143-41324162 | None:intergenic | 30.0% | |
! | TGAAGCATCTATCTTGAAAA+TGG | - | chr8_4:41324170-41324189 | None:intergenic | 30.0% |
AACATAGTCAAAAGTAGAAG+AGG | - | chr8_4:41324205-41324224 | None:intergenic | 30.0% | |
!! | CTACTTTTGACTATGTTGAA+CGG | + | chr8_4:41324208-41324227 | Msa1326710:intron | 30.0% |
!! | TACTTTTGACTATGTTGAAC+GGG | + | chr8_4:41324209-41324228 | Msa1326710:intron | 30.0% |
! | TTTTTGTCATAAGGTTCTCT+GGG | - | chr8_4:41324264-41324283 | None:intergenic | 30.0% |
!!! | TTTTTTGTCATAAGGTTCTC+TGG | - | chr8_4:41324265-41324284 | None:intergenic | 30.0% |
AGCCATATAAAGAATAACTG+TGG | + | chr8_4:41324494-41324513 | Msa1326710:intron | 30.0% | |
AGATATTGATGAGCACTATA+AGG | + | chr8_4:41324774-41324793 | Msa1326710:CDS | 30.0% | |
ATCCTTGAAGTCATTGATAA+GGG | + | chr8_4:41324808-41324827 | Msa1326710:CDS | 30.0% | |
TTATAGAGCTATCTTTGCTT+TGG | - | chr8_4:41324956-41324975 | None:intergenic | 30.0% | |
!! | TAGTAATGGGTTATTGCATT+GGG | + | chr8_4:41325000-41325019 | Msa1326710:three_prime_UTR | 30.0% |
CTTCTATGTGATGTTTGTAA+TGG | + | chr8_4:41325097-41325116 | Msa1326710:three_prime_UTR | 30.0% | |
GAACAGATTGTAGAACTTGT+CGG | - | chr8_4:41323782-41323801 | None:intergenic | 35.0% | |
!! | TGATGATTTGGTTATCGATC+AGG | - | chr8_4:41323944-41323963 | None:intergenic | 35.0% |
! | TTTTGTCATAAGGTTCTCTG+GGG | - | chr8_4:41324263-41324282 | None:intergenic | 35.0% |
ATCTGTGAATTATGATGGCA+CGG | - | chr8_4:41324674-41324693 | None:intergenic | 35.0% | |
TTGCCATCTGTGAATTATGA+TGG | - | chr8_4:41324679-41324698 | None:intergenic | 35.0% | |
ATCATAATTCACAGATGGCA+AGG | + | chr8_4:41324678-41324697 | Msa1326710:intron | 35.0% | |
AACACTTATAAGCTCTTTGG+TGG | + | chr8_4:41324751-41324770 | Msa1326710:CDS | 35.0% | |
CATCCTTGAAGTCATTGATA+AGG | + | chr8_4:41324807-41324826 | Msa1326710:CDS | 35.0% | |
AAGTATTCCATGTAGCCATT+TGG | - | chr8_4:41324898-41324917 | None:intergenic | 35.0% | |
AATGGCTACATGGAATACTT+TGG | + | chr8_4:41324898-41324917 | Msa1326710:CDS | 35.0% | |
!! | CTAGTAATGGGTTATTGCAT+TGG | + | chr8_4:41324999-41325018 | Msa1326710:three_prime_UTR | 35.0% |
GAACAGATTGTAGAACTTGT+CGG | - | chr8_4:41323782-41323801 | None:intergenic | 35.0% | |
!! | TGATGATTTGGTTATCGATC+AGG | - | chr8_4:41323944-41323963 | None:intergenic | 35.0% |
! | TTTTGTCATAAGGTTCTCTG+GGG | - | chr8_4:41324263-41324282 | None:intergenic | 35.0% |
ATCTGTGAATTATGATGGCA+CGG | - | chr8_4:41324674-41324693 | None:intergenic | 35.0% | |
TTGCCATCTGTGAATTATGA+TGG | - | chr8_4:41324679-41324698 | None:intergenic | 35.0% | |
ATCATAATTCACAGATGGCA+AGG | + | chr8_4:41324678-41324697 | Msa1326710:intron | 35.0% | |
AACACTTATAAGCTCTTTGG+TGG | + | chr8_4:41324751-41324770 | Msa1326710:CDS | 35.0% | |
CATCCTTGAAGTCATTGATA+AGG | + | chr8_4:41324807-41324826 | Msa1326710:CDS | 35.0% | |
AAGTATTCCATGTAGCCATT+TGG | - | chr8_4:41324898-41324917 | None:intergenic | 35.0% | |
AATGGCTACATGGAATACTT+TGG | + | chr8_4:41324898-41324917 | Msa1326710:CDS | 35.0% | |
!! | CTAGTAATGGGTTATTGCAT+TGG | + | chr8_4:41324999-41325018 | Msa1326710:three_prime_UTR | 35.0% |
! | AGATTGGCATCACACTGATT+CGG | + | chr8_4:41323869-41323888 | Msa1326710:intron | 40.0% |
!! | ACACTGATTCGGTTAAACAC+TGG | + | chr8_4:41323880-41323899 | Msa1326710:intron | 40.0% |
AAACACTGGACTTACGTCAT+AGG | + | chr8_4:41323894-41323913 | Msa1326710:intron | 40.0% | |
AAATCAGGGGTAACCATGTT+TGG | - | chr8_4:41324130-41324149 | None:intergenic | 40.0% | |
! | ATAAGGTTCTCTGGGGAATA+TGG | - | chr8_4:41324256-41324275 | None:intergenic | 40.0% |
TCTGTGAATTATGATGGCAC+GGG | - | chr8_4:41324673-41324692 | None:intergenic | 40.0% | |
GTGCCATCATAATTCACAGA+TGG | + | chr8_4:41324673-41324692 | Msa1326710:intron | 40.0% | |
CACCCTTATCAATGACTTCA+AGG | - | chr8_4:41324813-41324832 | None:intergenic | 40.0% | |
GAAGTCATTGATAAGGGTGA+TGG | + | chr8_4:41324814-41324833 | Msa1326710:CDS | 40.0% | |
ATTCCATGTAGCCATTTGGA+GGG | - | chr8_4:41324894-41324913 | None:intergenic | 40.0% | |
TATTCCATGTAGCCATTTGG+AGG | - | chr8_4:41324895-41324914 | None:intergenic | 40.0% | |
!! | AATGGGTTATTGCATTGGGT+TGG | + | chr8_4:41325004-41325023 | Msa1326710:three_prime_UTR | 40.0% |
AGTGTGATGTCTGTACATGA+CGG | + | chr8_4:41325124-41325143 | Msa1326710:three_prime_UTR | 40.0% | |
! | AGATTGGCATCACACTGATT+CGG | + | chr8_4:41323869-41323888 | Msa1326710:intron | 40.0% |
!! | ACACTGATTCGGTTAAACAC+TGG | + | chr8_4:41323880-41323899 | Msa1326710:intron | 40.0% |
AAACACTGGACTTACGTCAT+AGG | + | chr8_4:41323894-41323913 | Msa1326710:intron | 40.0% | |
AAATCAGGGGTAACCATGTT+TGG | - | chr8_4:41324130-41324149 | None:intergenic | 40.0% | |
! | ATAAGGTTCTCTGGGGAATA+TGG | - | chr8_4:41324256-41324275 | None:intergenic | 40.0% |
TCTGTGAATTATGATGGCAC+GGG | - | chr8_4:41324673-41324692 | None:intergenic | 40.0% | |
GTGCCATCATAATTCACAGA+TGG | + | chr8_4:41324673-41324692 | Msa1326710:intron | 40.0% | |
CACCCTTATCAATGACTTCA+AGG | - | chr8_4:41324813-41324832 | None:intergenic | 40.0% | |
GAAGTCATTGATAAGGGTGA+TGG | + | chr8_4:41324814-41324833 | Msa1326710:CDS | 40.0% | |
ATTCCATGTAGCCATTTGGA+GGG | - | chr8_4:41324894-41324913 | None:intergenic | 40.0% | |
TATTCCATGTAGCCATTTGG+AGG | - | chr8_4:41324895-41324914 | None:intergenic | 40.0% | |
!! | AATGGGTTATTGCATTGGGT+TGG | + | chr8_4:41325004-41325023 | Msa1326710:three_prime_UTR | 40.0% |
AGTGTGATGTCTGTACATGA+CGG | + | chr8_4:41325124-41325143 | Msa1326710:three_prime_UTR | 40.0% | |
! | GGTAAGCTCAGTACTGAAGT+TGG | + | chr8_4:41323742-41323761 | Msa1326710:CDS | 45.0% |
AGATTGTAGAACTTGTCGGC+GGG | - | chr8_4:41323778-41323797 | None:intergenic | 45.0% | |
CAGATTGTAGAACTTGTCGG+CGG | - | chr8_4:41323779-41323798 | None:intergenic | 45.0% | |
GAGGATATTGACCCTCCAAA+TGG | + | chr8_4:41324880-41324899 | Msa1326710:CDS | 45.0% | |
! | GGTAAGCTCAGTACTGAAGT+TGG | + | chr8_4:41323742-41323761 | Msa1326710:CDS | 45.0% |
AGATTGTAGAACTTGTCGGC+GGG | - | chr8_4:41323778-41323797 | None:intergenic | 45.0% | |
CAGATTGTAGAACTTGTCGG+CGG | - | chr8_4:41323779-41323798 | None:intergenic | 45.0% | |
GAGGATATTGACCCTCCAAA+TGG | + | chr8_4:41324880-41324899 | Msa1326710:CDS | 45.0% | |
!!! | ATATTTTTGTATAAAAAAAA+AGG | - | chr8_4:41324544-41324563 | None:intergenic | 5.0% |
!!! | TTTTATACAAAAATATTTAT+TGG | + | chr8_4:41324548-41324567 | Msa1326710:intron | 5.0% |
!!! | ATATTTTTGTATAAAAAAAA+AGG | - | chr8_4:41324544-41324563 | None:intergenic | 5.0% |
!!! | TTTTATACAAAAATATTTAT+TGG | + | chr8_4:41324548-41324567 | Msa1326710:intron | 5.0% |
ATGGCACTGCTGCTGCTAAA+TGG | + | chr8_4:41324833-41324852 | Msa1326710:CDS | 50.0% | |
TGACCCTCCAAATGGCTACA+TGG | + | chr8_4:41324888-41324907 | Msa1326710:CDS | 50.0% | |
ATGGCACTGCTGCTGCTAAA+TGG | + | chr8_4:41324833-41324852 | Msa1326710:CDS | 50.0% | |
TGACCCTCCAAATGGCTACA+TGG | + | chr8_4:41324888-41324907 | Msa1326710:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_4 | gene | 41323730 | 41325203 | 41323730 | ID=Msa1326710;Name=Msa1326710 |
chr8_4 | mRNA | 41323730 | 41325203 | 41323730 | ID=Msa1326710-mRNA-1;Parent=Msa1326710;Name=Msa1326710-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0.5|1|1|1|2|228|142 |
chr8_4 | exon | 41323730 | 41323874 | 41323730 | ID=Msa1326710-mRNA-1:exon:12142;Parent=Msa1326710-mRNA-1 |
chr8_4 | exon | 41324692 | 41325203 | 41324692 | ID=Msa1326710-mRNA-1:exon:12143;Parent=Msa1326710-mRNA-1 |
chr8_4 | CDS | 41323730 | 41323874 | 41323730 | ID=Msa1326710-mRNA-1:cds;Parent=Msa1326710-mRNA-1 |
chr8_4 | CDS | 41324692 | 41324975 | 41324692 | ID=Msa1326710-mRNA-1:cds;Parent=Msa1326710-mRNA-1 |
chr8_4 | three_prime_UTR | 41324976 | 41325203 | 41324976 | ID=Msa1326710-mRNA-1:three_prime_utr;Parent=Msa1326710-mRNA-1 |
Gene Sequence |
Protein sequence |