AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1326710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1326710 MtrunA17_Chr8g0355721 82.051 156 14 1 1 142 1 156 3.33e-88 253
Msa1326710 MtrunA17_Chr8g0355741 71.338 157 30 2 1 142 1 157 6.44e-76 222
Msa1326710 MtrunA17_Chr8g0355781 69.737 152 32 2 1 138 1 152 5.21e-72 212
Msa1326710 MtrunA17_Chr8g0355661 68.790 157 33 3 1 142 1 156 1.54e-71 211
Msa1326710 MtrunA17_Chr8g0355761 67.105 152 36 2 1 138 1 152 3.56e-67 200
Msa1326710 MtrunA17_Chr8g0355811 64.052 153 40 2 1 139 1 152 2.34e-66 198
Msa1326710 MtrunA17_Chr8g0355641 63.462 156 42 3 1 141 1 156 1.72e-65 196
Msa1326710 MtrunA17_Chr8g0355821 60.784 153 45 2 1 139 1 152 8.63e-63 189
Msa1326710 MtrunA17_Chr8g0355801 60.784 153 45 2 1 139 1 152 2.72e-61 185
Msa1326710 MtrunA17_Chr8g0355791 60.131 153 46 2 1 139 1 152 1.12e-60 184
Msa1326710 MtrunA17_Chr8g0355771 59.477 153 47 2 1 139 1 152 1.58e-59 181
Msa1326710 MtrunA17_Chr1g0160381 36.184 152 82 2 1 137 5 156 1.29e-30 107
Msa1326710 MtrunA17_Chr1g0160371 37.500 152 80 2 1 137 1 152 2.73e-30 107
Msa1326710 MtrunA17_Chr1g0160351 45.652 92 48 1 48 137 2 93 9.01e-23 85.9
Msa1326710 MtrunA17_Chr8g0339261 31.724 145 84 3 6 136 8 151 9.74e-21 82.4
Msa1326710 MtrunA17_Chr1g0160391 32.903 155 84 4 1 135 1 155 1.63e-20 82.0
Msa1326710 MtrunA17_Chr1g0160801 33.333 147 77 5 7 138 7 147 3.43e-17 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1326710 AT1G70870.1 35.252 139 87 2 1 137 1 138 2.98e-21 83.6
Msa1326710 AT5G28010.1 31.757 148 86 3 3 135 15 162 1.36e-18 77.4
Msa1326710 AT5G28010.2 31.757 148 86 3 3 135 15 162 1.36e-18 77.4
Msa1326710 AT1G70890.1 33.108 148 84 3 3 135 7 154 1.65e-18 77.0
Msa1326710 AT1G23120.1 29.496 139 87 2 7 135 7 144 1.21e-16 72.0
Msa1326710 AT1G23120.2 29.496 139 87 2 7 135 57 194 2.94e-16 72.4
Msa1326710 AT1G70830.5 30.405 148 88 3 3 135 22 169 6.66e-16 70.9
Msa1326710 AT1G70830.3 30.405 148 88 3 3 135 22 169 1.31e-15 70.5
Msa1326710 AT1G70830.2 30.405 148 88 3 3 135 22 169 3.28e-15 70.5
Msa1326710 AT1G24020.1 31.875 160 85 4 1 141 1 155 4.20e-15 68.2
Msa1326710 AT1G24020.2 31.875 160 85 4 1 141 1 155 4.20e-15 68.2
Msa1326710 AT1G70840.1 28.378 148 91 3 3 135 20 167 4.69e-15 68.6
Msa1326710 AT1G70830.1 30.405 148 88 3 3 135 22 169 5.06e-15 70.9
Msa1326710 AT1G70830.1 29.054 148 90 3 3 135 184 331 4.17e-13 65.5
Msa1326710 AT1G70880.1 27.027 148 93 3 3 135 8 155 8.71e-15 67.4
Msa1326710 AT4G23670.1 32.237 152 88 4 1 138 1 151 1.24e-14 67.0
Msa1326710 AT5G28000.1 28.378 148 91 3 3 135 13 160 5.35e-14 65.5
Msa1326710 AT1G70850.2 28.378 148 91 3 3 135 9 156 1.25e-13 65.9
Msa1326710 AT1G70850.3 28.378 148 91 3 3 135 9 156 2.11e-13 65.9
Msa1326710 AT1G70850.3 28.261 138 84 3 13 135 175 312 2.98e-12 62.8
Msa1326710 AT1G70850.1 28.378 148 91 3 3 135 9 156 2.11e-13 65.9
Msa1326710 AT1G70850.1 28.261 138 84 3 13 135 175 312 2.98e-12 62.8
Msa1326710 AT1G70830.4 29.054 148 90 3 3 135 137 284 2.29e-13 65.9
Msa1326710 AT2G01520.1 29.605 152 92 4 1 138 1 151 6.47e-12 59.7
Msa1326710 AT4G23680.1 29.605 152 92 4 1 138 1 151 1.22e-11 58.9
Msa1326710 AT1G35260.1 23.810 147 90 3 7 135 6 148 7.86e-11 57.0

Find 33 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGCACTGCTGCTGCTAAA+TGG 0.310932 8_4:+41324833 Msa1326710:CDS
TATGTGATGAAATCAATAAA+TGG 0.369456 8_4:+41325165 Msa1326710:three_prime_UTR
CACCCTTATCAATGACTTCA+AGG 0.380806 8_4:-41324810 None:intergenic
TTATAGAGCTATCTTTGCTT+TGG 0.392094 8_4:-41324953 None:intergenic
AATTAGTGTGATATTTGTAA+TGG 0.409729 8_4:+41325050 Msa1326710:three_prime_UTR
ATATTGTTGCATATGCATAT+TGG 0.412178 8_4:+41325074 Msa1326710:three_prime_UTR
TAGTAATGGGTTATTGCATT+GGG 0.416848 8_4:+41325000 Msa1326710:three_prime_UTR
TGTAACAAATAACTAGTAAT+GGG 0.422186 8_4:+41324987 Msa1326710:three_prime_UTR
TTCTAAGAAATGGTGCTCTC+TGG 0.436928 8_4:+41323721 None:intergenic
CATCCTTGAAGTCATTGATA+AGG 0.445764 8_4:+41324807 Msa1326710:CDS
AAGTATTCCATGTAGCCATT+TGG 0.448595 8_4:-41324895 None:intergenic
CTTCTATGTGATGTTTGTAA+TGG 0.450639 8_4:+41325097 Msa1326710:three_prime_UTR
CTAGTAATGGGTTATTGCAT+TGG 0.451009 8_4:+41324999 Msa1326710:three_prime_UTR
AACACTTATAAGCTCTTTGG+TGG 0.457999 8_4:+41324751 Msa1326710:CDS
AAACTTCATGAAGTGAAGAT+TGG 0.458959 8_4:+41323853 Msa1326710:CDS
ATGTAACAAATAACTAGTAA+TGG 0.468583 8_4:+41324986 Msa1326710:three_prime_UTR
GGTAAGCTCAGTACTGAAGT+TGG 0.490802 8_4:+41323742 Msa1326710:CDS
AATGGGTTATTGCATTGGGT+TGG 0.493837 8_4:+41325004 Msa1326710:three_prime_UTR
ATCCTTGAAGTCATTGATAA+GGG 0.494628 8_4:+41324808 Msa1326710:CDS
AGATATTGATGAGCACTATA+AGG 0.500590 8_4:+41324774 Msa1326710:CDS
GAACAGATTGTAGAACTTGT+CGG 0.501167 8_4:-41323779 None:intergenic
TATTCCATGTAGCCATTTGG+AGG 0.517921 8_4:-41324892 None:intergenic
AATGGCTACATGGAATACTT+TGG 0.525683 8_4:+41324898 Msa1326710:CDS
TGACCCTCCAAATGGCTACA+TGG 0.526835 8_4:+41324888 Msa1326710:CDS
GAGGATATTGACCCTCCAAA+TGG 0.540200 8_4:+41324880 Msa1326710:CDS
TATGATGAACTCTTTCACAA+AGG 0.552779 8_4:-41323828 None:intergenic
GAAGTCATTGATAAGGGTGA+TGG 0.579318 8_4:+41324814 Msa1326710:CDS
ATCATAATTCACAGATGGCA+AGG 0.582682 8_4:+41324678 Msa1326710:intron
ATTCCATGTAGCCATTTGGA+GGG 0.625101 8_4:-41324891 None:intergenic
AGATTGTAGAACTTGTCGGC+GGG 0.646397 8_4:-41323775 None:intergenic
TGAATATGAAAAGATCAATG+AGG 0.667026 8_4:+41324861 Msa1326710:CDS
CAGATTGTAGAACTTGTCGG+CGG 0.688816 8_4:-41323776 None:intergenic
AGTGTGATGTCTGTACATGA+CGG 0.731855 8_4:+41325124 Msa1326710:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGGAATAATAAATATTTATA+AGG - chr8_4:41324524-41324543 None:intergenic 10.0%
!!! ATAGTTTATTTGTTAAAAAA+TGG + chr8_4:41324588-41324607 Msa1326710:intron 10.0%
!!! TAGTTTATTTGTTAAAAAAT+GGG + chr8_4:41324589-41324608 Msa1326710:intron 10.0%
!! AGGAATAATAAATATTTATA+AGG - chr8_4:41324524-41324543 None:intergenic 10.0%
!!! ATAGTTTATTTGTTAAAAAA+TGG + chr8_4:41324588-41324607 Msa1326710:intron 10.0%
!!! TAGTTTATTTGTTAAAAAAT+GGG + chr8_4:41324589-41324608 Msa1326710:intron 10.0%
!! AATTAAATAAGATGATGATT+TGG - chr8_4:41323956-41323975 None:intergenic 15.0%
!! AAAAAAAATCAACAATCATT+TGG + chr8_4:41324279-41324298 Msa1326710:intron 15.0%
!! AAAAAAATCAACAATCATTT+GGG + chr8_4:41324280-41324299 Msa1326710:intron 15.0%
!! TACAAATAAAAATGAAACTT+TGG - chr8_4:41324643-41324662 None:intergenic 15.0%
!! AATTAAATAAGATGATGATT+TGG - chr8_4:41323956-41323975 None:intergenic 15.0%
!! AAAAAAAATCAACAATCATT+TGG + chr8_4:41324279-41324298 Msa1326710:intron 15.0%
!! AAAAAAATCAACAATCATTT+GGG + chr8_4:41324280-41324299 Msa1326710:intron 15.0%
!! TACAAATAAAAATGAAACTT+TGG - chr8_4:41324643-41324662 None:intergenic 15.0%
!!! TGTTGATTTTTTTTGTCATA+AGG - chr8_4:41324273-41324292 None:intergenic 20.0%
!! ATTATGAGATCTCAAAAAAA+TGG + chr8_4:41324378-41324397 Msa1326710:intron 20.0%
!! ATGTAACAAATAACTAGTAA+TGG + chr8_4:41324986-41325005 Msa1326710:three_prime_UTR 20.0%
!! TGTAACAAATAACTAGTAAT+GGG + chr8_4:41324987-41325006 Msa1326710:three_prime_UTR 20.0%
!! AATTAGTGTGATATTTGTAA+TGG + chr8_4:41325050-41325069 Msa1326710:three_prime_UTR 20.0%
!! TATGTGATGAAATCAATAAA+TGG + chr8_4:41325165-41325184 Msa1326710:three_prime_UTR 20.0%
!!! TGTTGATTTTTTTTGTCATA+AGG - chr8_4:41324273-41324292 None:intergenic 20.0%
!! ATTATGAGATCTCAAAAAAA+TGG + chr8_4:41324378-41324397 Msa1326710:intron 20.0%
!! ATGTAACAAATAACTAGTAA+TGG + chr8_4:41324986-41325005 Msa1326710:three_prime_UTR 20.0%
!! TGTAACAAATAACTAGTAAT+GGG + chr8_4:41324987-41325006 Msa1326710:three_prime_UTR 20.0%
!! AATTAGTGTGATATTTGTAA+TGG + chr8_4:41325050-41325069 Msa1326710:three_prime_UTR 20.0%
!! TATGTGATGAAATCAATAAA+TGG + chr8_4:41325165-41325184 Msa1326710:three_prime_UTR 20.0%
! ATAAGAAAGAAACAAGTACA+TGG + chr8_4:41324062-41324081 Msa1326710:intron 25.0%
! TTGGGAAGAAAAAAAAATCA+GGG - chr8_4:41324144-41324163 None:intergenic 25.0%
! TTTGGGAAGAAAAAAAAATC+AGG - chr8_4:41324145-41324164 None:intergenic 25.0%
!! CTATCTTGAAAATGGTTTTT+GGG - chr8_4:41324162-41324181 None:intergenic 25.0%
!! TCTATCTTGAAAATGGTTTT+TGG - chr8_4:41324163-41324182 None:intergenic 25.0%
! AACCACAGTTATTCTTTATA+TGG - chr8_4:41324499-41324518 None:intergenic 25.0%
! AAAAACACTTATAAGCTCTT+TGG + chr8_4:41324748-41324767 Msa1326710:CDS 25.0%
! TGAATATGAAAAGATCAATG+AGG + chr8_4:41324861-41324880 Msa1326710:CDS 25.0%
! ATATTGTTGCATATGCATAT+TGG + chr8_4:41325074-41325093 Msa1326710:three_prime_UTR 25.0%
! ATAAGAAAGAAACAAGTACA+TGG + chr8_4:41324062-41324081 Msa1326710:intron 25.0%
! TTGGGAAGAAAAAAAAATCA+GGG - chr8_4:41324144-41324163 None:intergenic 25.0%
! TTTGGGAAGAAAAAAAAATC+AGG - chr8_4:41324145-41324164 None:intergenic 25.0%
!! CTATCTTGAAAATGGTTTTT+GGG - chr8_4:41324162-41324181 None:intergenic 25.0%
!! TCTATCTTGAAAATGGTTTT+TGG - chr8_4:41324163-41324182 None:intergenic 25.0%
! AACCACAGTTATTCTTTATA+TGG - chr8_4:41324499-41324518 None:intergenic 25.0%
! AAAAACACTTATAAGCTCTT+TGG + chr8_4:41324748-41324767 Msa1326710:CDS 25.0%
! TGAATATGAAAAGATCAATG+AGG + chr8_4:41324861-41324880 Msa1326710:CDS 25.0%
! ATATTGTTGCATATGCATAT+TGG + chr8_4:41325074-41325093 Msa1326710:three_prime_UTR 25.0%
TATGATGAACTCTTTCACAA+AGG - chr8_4:41323831-41323850 None:intergenic 30.0%
AAACTTCATGAAGTGAAGAT+TGG + chr8_4:41323853-41323872 Msa1326710:CDS 30.0%
TACATTCTACAAACCAAACA+TGG + chr8_4:41324114-41324133 Msa1326710:intron 30.0%
TGGGAAGAAAAAAAAATCAG+GGG - chr8_4:41324143-41324162 None:intergenic 30.0%
! TGAAGCATCTATCTTGAAAA+TGG - chr8_4:41324170-41324189 None:intergenic 30.0%
AACATAGTCAAAAGTAGAAG+AGG - chr8_4:41324205-41324224 None:intergenic 30.0%
!! CTACTTTTGACTATGTTGAA+CGG + chr8_4:41324208-41324227 Msa1326710:intron 30.0%
!! TACTTTTGACTATGTTGAAC+GGG + chr8_4:41324209-41324228 Msa1326710:intron 30.0%
! TTTTTGTCATAAGGTTCTCT+GGG - chr8_4:41324264-41324283 None:intergenic 30.0%
!!! TTTTTTGTCATAAGGTTCTC+TGG - chr8_4:41324265-41324284 None:intergenic 30.0%
AGCCATATAAAGAATAACTG+TGG + chr8_4:41324494-41324513 Msa1326710:intron 30.0%
AGATATTGATGAGCACTATA+AGG + chr8_4:41324774-41324793 Msa1326710:CDS 30.0%
ATCCTTGAAGTCATTGATAA+GGG + chr8_4:41324808-41324827 Msa1326710:CDS 30.0%
TTATAGAGCTATCTTTGCTT+TGG - chr8_4:41324956-41324975 None:intergenic 30.0%
!! TAGTAATGGGTTATTGCATT+GGG + chr8_4:41325000-41325019 Msa1326710:three_prime_UTR 30.0%
CTTCTATGTGATGTTTGTAA+TGG + chr8_4:41325097-41325116 Msa1326710:three_prime_UTR 30.0%
TATGATGAACTCTTTCACAA+AGG - chr8_4:41323831-41323850 None:intergenic 30.0%
AAACTTCATGAAGTGAAGAT+TGG + chr8_4:41323853-41323872 Msa1326710:CDS 30.0%
TACATTCTACAAACCAAACA+TGG + chr8_4:41324114-41324133 Msa1326710:intron 30.0%
TGGGAAGAAAAAAAAATCAG+GGG - chr8_4:41324143-41324162 None:intergenic 30.0%
! TGAAGCATCTATCTTGAAAA+TGG - chr8_4:41324170-41324189 None:intergenic 30.0%
AACATAGTCAAAAGTAGAAG+AGG - chr8_4:41324205-41324224 None:intergenic 30.0%
!! CTACTTTTGACTATGTTGAA+CGG + chr8_4:41324208-41324227 Msa1326710:intron 30.0%
!! TACTTTTGACTATGTTGAAC+GGG + chr8_4:41324209-41324228 Msa1326710:intron 30.0%
! TTTTTGTCATAAGGTTCTCT+GGG - chr8_4:41324264-41324283 None:intergenic 30.0%
!!! TTTTTTGTCATAAGGTTCTC+TGG - chr8_4:41324265-41324284 None:intergenic 30.0%
AGCCATATAAAGAATAACTG+TGG + chr8_4:41324494-41324513 Msa1326710:intron 30.0%
AGATATTGATGAGCACTATA+AGG + chr8_4:41324774-41324793 Msa1326710:CDS 30.0%
ATCCTTGAAGTCATTGATAA+GGG + chr8_4:41324808-41324827 Msa1326710:CDS 30.0%
TTATAGAGCTATCTTTGCTT+TGG - chr8_4:41324956-41324975 None:intergenic 30.0%
!! TAGTAATGGGTTATTGCATT+GGG + chr8_4:41325000-41325019 Msa1326710:three_prime_UTR 30.0%
CTTCTATGTGATGTTTGTAA+TGG + chr8_4:41325097-41325116 Msa1326710:three_prime_UTR 30.0%
GAACAGATTGTAGAACTTGT+CGG - chr8_4:41323782-41323801 None:intergenic 35.0%
!! TGATGATTTGGTTATCGATC+AGG - chr8_4:41323944-41323963 None:intergenic 35.0%
! TTTTGTCATAAGGTTCTCTG+GGG - chr8_4:41324263-41324282 None:intergenic 35.0%
ATCTGTGAATTATGATGGCA+CGG - chr8_4:41324674-41324693 None:intergenic 35.0%
TTGCCATCTGTGAATTATGA+TGG - chr8_4:41324679-41324698 None:intergenic 35.0%
ATCATAATTCACAGATGGCA+AGG + chr8_4:41324678-41324697 Msa1326710:intron 35.0%
AACACTTATAAGCTCTTTGG+TGG + chr8_4:41324751-41324770 Msa1326710:CDS 35.0%
CATCCTTGAAGTCATTGATA+AGG + chr8_4:41324807-41324826 Msa1326710:CDS 35.0%
AAGTATTCCATGTAGCCATT+TGG - chr8_4:41324898-41324917 None:intergenic 35.0%
AATGGCTACATGGAATACTT+TGG + chr8_4:41324898-41324917 Msa1326710:CDS 35.0%
!! CTAGTAATGGGTTATTGCAT+TGG + chr8_4:41324999-41325018 Msa1326710:three_prime_UTR 35.0%
GAACAGATTGTAGAACTTGT+CGG - chr8_4:41323782-41323801 None:intergenic 35.0%
!! TGATGATTTGGTTATCGATC+AGG - chr8_4:41323944-41323963 None:intergenic 35.0%
! TTTTGTCATAAGGTTCTCTG+GGG - chr8_4:41324263-41324282 None:intergenic 35.0%
ATCTGTGAATTATGATGGCA+CGG - chr8_4:41324674-41324693 None:intergenic 35.0%
TTGCCATCTGTGAATTATGA+TGG - chr8_4:41324679-41324698 None:intergenic 35.0%
ATCATAATTCACAGATGGCA+AGG + chr8_4:41324678-41324697 Msa1326710:intron 35.0%
AACACTTATAAGCTCTTTGG+TGG + chr8_4:41324751-41324770 Msa1326710:CDS 35.0%
CATCCTTGAAGTCATTGATA+AGG + chr8_4:41324807-41324826 Msa1326710:CDS 35.0%
AAGTATTCCATGTAGCCATT+TGG - chr8_4:41324898-41324917 None:intergenic 35.0%
AATGGCTACATGGAATACTT+TGG + chr8_4:41324898-41324917 Msa1326710:CDS 35.0%
!! CTAGTAATGGGTTATTGCAT+TGG + chr8_4:41324999-41325018 Msa1326710:three_prime_UTR 35.0%
! AGATTGGCATCACACTGATT+CGG + chr8_4:41323869-41323888 Msa1326710:intron 40.0%
!! ACACTGATTCGGTTAAACAC+TGG + chr8_4:41323880-41323899 Msa1326710:intron 40.0%
AAACACTGGACTTACGTCAT+AGG + chr8_4:41323894-41323913 Msa1326710:intron 40.0%
AAATCAGGGGTAACCATGTT+TGG - chr8_4:41324130-41324149 None:intergenic 40.0%
! ATAAGGTTCTCTGGGGAATA+TGG - chr8_4:41324256-41324275 None:intergenic 40.0%
TCTGTGAATTATGATGGCAC+GGG - chr8_4:41324673-41324692 None:intergenic 40.0%
GTGCCATCATAATTCACAGA+TGG + chr8_4:41324673-41324692 Msa1326710:intron 40.0%
CACCCTTATCAATGACTTCA+AGG - chr8_4:41324813-41324832 None:intergenic 40.0%
GAAGTCATTGATAAGGGTGA+TGG + chr8_4:41324814-41324833 Msa1326710:CDS 40.0%
ATTCCATGTAGCCATTTGGA+GGG - chr8_4:41324894-41324913 None:intergenic 40.0%
TATTCCATGTAGCCATTTGG+AGG - chr8_4:41324895-41324914 None:intergenic 40.0%
!! AATGGGTTATTGCATTGGGT+TGG + chr8_4:41325004-41325023 Msa1326710:three_prime_UTR 40.0%
AGTGTGATGTCTGTACATGA+CGG + chr8_4:41325124-41325143 Msa1326710:three_prime_UTR 40.0%
! AGATTGGCATCACACTGATT+CGG + chr8_4:41323869-41323888 Msa1326710:intron 40.0%
!! ACACTGATTCGGTTAAACAC+TGG + chr8_4:41323880-41323899 Msa1326710:intron 40.0%
AAACACTGGACTTACGTCAT+AGG + chr8_4:41323894-41323913 Msa1326710:intron 40.0%
AAATCAGGGGTAACCATGTT+TGG - chr8_4:41324130-41324149 None:intergenic 40.0%
! ATAAGGTTCTCTGGGGAATA+TGG - chr8_4:41324256-41324275 None:intergenic 40.0%
TCTGTGAATTATGATGGCAC+GGG - chr8_4:41324673-41324692 None:intergenic 40.0%
GTGCCATCATAATTCACAGA+TGG + chr8_4:41324673-41324692 Msa1326710:intron 40.0%
CACCCTTATCAATGACTTCA+AGG - chr8_4:41324813-41324832 None:intergenic 40.0%
GAAGTCATTGATAAGGGTGA+TGG + chr8_4:41324814-41324833 Msa1326710:CDS 40.0%
ATTCCATGTAGCCATTTGGA+GGG - chr8_4:41324894-41324913 None:intergenic 40.0%
TATTCCATGTAGCCATTTGG+AGG - chr8_4:41324895-41324914 None:intergenic 40.0%
!! AATGGGTTATTGCATTGGGT+TGG + chr8_4:41325004-41325023 Msa1326710:three_prime_UTR 40.0%
AGTGTGATGTCTGTACATGA+CGG + chr8_4:41325124-41325143 Msa1326710:three_prime_UTR 40.0%
! GGTAAGCTCAGTACTGAAGT+TGG + chr8_4:41323742-41323761 Msa1326710:CDS 45.0%
AGATTGTAGAACTTGTCGGC+GGG - chr8_4:41323778-41323797 None:intergenic 45.0%
CAGATTGTAGAACTTGTCGG+CGG - chr8_4:41323779-41323798 None:intergenic 45.0%
GAGGATATTGACCCTCCAAA+TGG + chr8_4:41324880-41324899 Msa1326710:CDS 45.0%
! GGTAAGCTCAGTACTGAAGT+TGG + chr8_4:41323742-41323761 Msa1326710:CDS 45.0%
AGATTGTAGAACTTGTCGGC+GGG - chr8_4:41323778-41323797 None:intergenic 45.0%
CAGATTGTAGAACTTGTCGG+CGG - chr8_4:41323779-41323798 None:intergenic 45.0%
GAGGATATTGACCCTCCAAA+TGG + chr8_4:41324880-41324899 Msa1326710:CDS 45.0%
!!! ATATTTTTGTATAAAAAAAA+AGG - chr8_4:41324544-41324563 None:intergenic 5.0%
!!! TTTTATACAAAAATATTTAT+TGG + chr8_4:41324548-41324567 Msa1326710:intron 5.0%
!!! ATATTTTTGTATAAAAAAAA+AGG - chr8_4:41324544-41324563 None:intergenic 5.0%
!!! TTTTATACAAAAATATTTAT+TGG + chr8_4:41324548-41324567 Msa1326710:intron 5.0%
ATGGCACTGCTGCTGCTAAA+TGG + chr8_4:41324833-41324852 Msa1326710:CDS 50.0%
TGACCCTCCAAATGGCTACA+TGG + chr8_4:41324888-41324907 Msa1326710:CDS 50.0%
ATGGCACTGCTGCTGCTAAA+TGG + chr8_4:41324833-41324852 Msa1326710:CDS 50.0%
TGACCCTCCAAATGGCTACA+TGG + chr8_4:41324888-41324907 Msa1326710:CDS 50.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 41323730 41325203 41323730 ID=Msa1326710;Name=Msa1326710
chr8_4 mRNA 41323730 41325203 41323730 ID=Msa1326710-mRNA-1;Parent=Msa1326710;Name=Msa1326710-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0.5|1|1|1|2|228|142
chr8_4 exon 41323730 41323874 41323730 ID=Msa1326710-mRNA-1:exon:12142;Parent=Msa1326710-mRNA-1
chr8_4 exon 41324692 41325203 41324692 ID=Msa1326710-mRNA-1:exon:12143;Parent=Msa1326710-mRNA-1
chr8_4 CDS 41323730 41323874 41323730 ID=Msa1326710-mRNA-1:cds;Parent=Msa1326710-mRNA-1
chr8_4 CDS 41324692 41324975 41324692 ID=Msa1326710-mRNA-1:cds;Parent=Msa1326710-mRNA-1
chr8_4 three_prime_UTR 41324976 41325203 41324976 ID=Msa1326710-mRNA-1:three_prime_utr;Parent=Msa1326710-mRNA-1
Gene Sequence

>Msa1326710

ATGGTGCTCTCTGGTAAGCTCAGTACTGAAGTTGGAATCAAAACACCCGCCGACAAGTTCTACAATCTGTTCATAACAGAACTTCATGAAGTGCAAAACCTTTGTGAAAGAGTTCATCATACAAAACTTCATGAAGTGAAGATTGATGGCAAGGTACATACATGTCACGAGAGAGTTGAAGAAGTTGATGAACTGAATAAAAAAAACACTTATAAGCTCTTTGGTGGAGATATTGATGAGCACTATAAGGTCTTTAAGCTCATCCTTGAAGTCATTGATAAGGGTGATGGCACTGCTGCTGCTAAATGGACAGTTGAATATGAAAAGATCAATGAGGATATTGACCCTCCAAATGGCTACATGGAATACTTTGGCAAAATCACTAGAGATGTTGATGCTCATCTTGCCAAAGCAAAGATAGCTCTATAA

Protein sequence

>Msa1326710

MVLSGKLSTEVGIKTPADKFYNLFITELHEVQNLCERVHHTKLHEVKIDGKVHTCHERVEEVDELNKKNTYKLFGGDIDEHYKVFKLILEVIDKGDGTAAAKWTVEYEKINEDIDPPNGYMEYFGKITRDVDAHLAKAKIAL*