AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0843240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0843240 MtrunA17_Chr5g0413921 96.793 343 11 0 1 343 1 343 0.0 674
Msa0843240 MtrunA17_Chr5g0413931 74.855 346 81 2 1 341 1 345 0.0 520
Msa0843240 MtrunA17_Chr5g0413941 74.551 334 85 0 1 334 1 334 0.0 514
Msa0843240 MtrunA17_Chr5g0413951 72.923 325 88 0 5 329 5 329 6.60e-176 491
Msa0843240 MtrunA17_Chr7g0227921 43.023 344 179 4 12 343 16 354 2.45e-80 249
Msa0843240 MtrunA17_Chr5g0413961 41.088 331 184 3 19 342 26 352 6.70e-80 248
Msa0843240 MtrunA17_Chr4g0059311 45.312 320 172 3 10 327 14 332 8.37e-79 244
Msa0843240 MtrunA17_Chr3g0126101 41.590 327 179 4 12 333 11 330 1.23e-76 239
Msa0843240 MtrunA17_Chr1g0150151 41.433 321 183 4 12 328 16 335 2.74e-72 228
Msa0843240 MtrunA17_Chr6g0451211 41.562 320 177 4 12 326 17 331 8.52e-71 224
Msa0843240 MtrunA17_Chr6g0451251 44.771 306 161 3 24 326 29 329 1.81e-67 216
Msa0843240 MtrunA17_Chr6g0451201 39.941 338 187 4 12 340 17 347 1.70e-66 213
Msa0843240 MtrunA17_Chr6g0451171 40.446 314 178 3 16 326 21 328 4.21e-65 210
Msa0843240 MtrunA17_Chr6g0451261 41.118 304 163 2 11 306 15 310 2.25e-64 219
Msa0843240 MtrunA17_Chr3g0114731 36.308 325 202 4 12 335 23 343 1.27e-58 194
Msa0843240 MtrunA17_Chr7g0255561 34.891 321 203 4 12 327 19 338 4.41e-58 192
Msa0843240 MtrunA17_Chr7g0255581 34.891 321 203 4 12 327 19 338 4.41e-58 192
Msa0843240 MtrunA17_Chr8g0354121 34.472 322 202 5 12 326 18 337 7.64e-58 192
Msa0843240 MtrunA17_Chr3g0081421 32.670 352 225 7 3 344 13 362 1.54e-57 191
Msa0843240 MtrunA17_Chr3g0081511 33.903 351 217 8 4 344 14 359 2.17e-56 188
Msa0843240 MtrunA17_Chr3g0126091 33.140 344 217 5 12 343 16 358 4.14e-56 186
Msa0843240 MtrunA17_Chr3g0114691 34.194 310 190 5 31 332 44 347 1.76e-53 181
Msa0843240 MtrunA17_Chr1g0160171 34.663 326 201 4 12 331 21 340 7.67e-53 178
Msa0843240 MtrunA17_Chr3g0129601 32.827 329 210 4 8 332 36 357 1.21e-52 177
Msa0843240 MtrunA17_Chr1g0155761 30.172 348 223 3 4 332 18 364 1.68e-51 176
Msa0843240 MtrunA17_Chr6g0483401 33.333 333 212 4 16 341 19 348 3.66e-51 174
Msa0843240 MtrunA17_Chr1g0182291 33.846 325 199 7 13 328 18 335 2.73e-50 171
Msa0843240 MtrunA17_Chr7g0263101 33.951 324 199 6 12 327 18 334 1.33e-49 170
Msa0843240 MtrunA17_Chr1g0186641 31.889 323 201 7 22 333 24 338 1.37e-49 169
Msa0843240 MtrunA17_Chr1g0186611 31.269 323 203 7 22 333 27 341 9.18e-49 167
Msa0843240 MtrunA17_Chr3g0142131 30.409 342 223 4 4 331 17 357 1.36e-48 167
Msa0843240 MtrunA17_Chr1g0160181 31.737 334 219 6 12 339 23 353 5.19e-48 166
Msa0843240 MtrunA17_Chr1g0164831 32.399 321 201 7 23 333 19 333 1.70e-47 163
Msa0843240 MtrunA17_Chr6g0463971 31.454 337 225 4 2 334 11 345 2.51e-47 164
Msa0843240 MtrunA17_Chr1g0186571 31.928 332 205 7 12 333 18 338 1.37e-46 161
Msa0843240 MtrunA17_Chr8g0383731 34.839 310 192 5 25 326 23 330 2.95e-46 160
Msa0843240 MtrunA17_Chr3g0114711 31.044 364 206 9 13 336 20 378 4.01e-46 161
Msa0843240 MtrunA17_Chr2g0278561 31.965 341 224 5 2 335 10 349 1.62e-45 159
Msa0843240 MtrunA17_Chr1g0171301 31.613 310 207 5 27 333 36 343 1.76e-45 159
Msa0843240 MtrunA17_Chr8g0334761 32.317 328 216 5 12 336 15 339 3.75e-45 158
Msa0843240 MtrunA17_Chr5g0407991 32.047 337 211 5 11 331 13 347 3.97e-45 158
Msa0843240 MtrunA17_Chr2g0284261 31.250 304 205 3 23 325 24 324 5.05e-45 157
Msa0843240 MtrunA17_Chr5g0408031 32.641 337 205 7 12 329 15 348 3.40e-44 155
Msa0843240 MtrunA17_Chr1g0186561 31.429 315 200 6 27 333 36 342 6.18e-44 154
Msa0843240 MtrunA17_Chr5g0408001 32.432 333 205 6 12 327 15 344 6.19e-44 155
Msa0843240 MtrunA17_Chr1g0186601 29.936 314 205 6 27 333 36 341 7.56e-44 154
Msa0843240 MtrunA17_Chr2g0290611 32.110 327 218 3 2 325 7 332 1.40e-43 154
Msa0843240 MtrunA17_Chr1g0184221 27.246 345 231 4 12 341 21 360 2.64e-43 153
Msa0843240 MtrunA17_Chr5g0408041 31.519 349 214 8 5 331 6 351 5.39e-43 153
Msa0843240 MtrunA17_Chr4g0050941 31.805 349 207 6 12 343 17 351 2.17e-42 151
Msa0843240 MtrunA17_Chr3g0129591 31.611 329 213 5 15 335 13 337 2.44e-42 150
Msa0843240 MtrunA17_Chr2g0278541 29.429 333 223 4 3 325 8 338 2.83e-42 151
Msa0843240 MtrunA17_Chr6g0451191 37.864 206 125 1 121 326 1 203 3.02e-42 147
Msa0843240 MtrunA17_Chr4g0073241 31.454 337 217 5 3 332 4 333 5.49e-42 149
Msa0843240 MtrunA17_Chr2g0332001 32.203 354 224 8 3 344 34 383 8.50e-42 150
Msa0843240 MtrunA17_Chr2g0278551 30.982 326 223 1 2 325 7 332 1.71e-41 149
Msa0843240 MtrunA17_Chr7g0271561 28.182 330 227 5 12 332 12 340 2.15e-41 148
Msa0843240 MtrunA17_Chr4g0050891 30.462 325 217 5 3 320 9 331 3.14e-41 147
Msa0843240 MtrunA17_Chr3g0129571 29.254 335 220 6 12 335 12 340 5.19e-41 147
Msa0843240 MtrunA17_Chr3g0114701 31.157 337 226 5 12 344 14 348 7.16e-40 144
Msa0843240 MtrunA17_Chr4g0050881 30.909 330 210 6 12 331 14 335 2.32e-39 142
Msa0843240 MtrunA17_Chr4g0051021 28.963 328 225 4 3 325 10 334 6.53e-39 142
Msa0843240 MtrunA17_Chr5g0407971 29.882 338 211 7 12 329 16 347 7.91e-39 142
Msa0843240 MtrunA17_Chr8g0369841 29.464 336 215 6 10 327 12 343 1.40e-37 138
Msa0843240 MtrunA17_Chr5g0441761 27.353 340 232 5 6 344 13 338 5.42e-37 136
Msa0843240 MtrunA17_Chr1g0160111 27.987 318 202 6 33 333 33 340 8.08e-37 136
Msa0843240 MtrunA17_Chr2g0310441 29.730 296 205 3 32 325 35 329 1.92e-36 135
Msa0843240 MtrunA17_Chr8g0334771 30.395 329 226 3 12 338 15 342 4.65e-34 129
Msa0843240 MtrunA17_Chr1g0211801 32.189 233 153 3 23 253 27 256 5.70e-33 123
Msa0843240 MtrunA17_Chr8g0334751 28.443 334 236 3 12 343 16 348 6.18e-33 125
Msa0843240 MtrunA17_Chr5g0399281 26.888 331 230 4 2 325 3 328 1.69e-32 124
Msa0843240 MtrunA17_Chr4g0051001 30.392 306 206 4 3 303 27 330 6.21e-32 122
Msa0843240 MtrunA17_Chr3g0129581 28.228 333 219 5 15 335 13 337 7.39e-31 120
Msa0843240 MtrunA17_Chr5g0428881 25.220 341 236 5 11 344 22 350 4.01e-30 118
Msa0843240 MtrunA17_Chr1g0177221 29.918 244 167 4 12 253 23 264 5.18e-29 112
Msa0843240 MtrunA17_Chr4g0056081 25.982 331 240 4 2 327 9 339 7.84e-29 114
Msa0843240 MtrunA17_Chr3g0084091 28.936 235 166 1 92 325 15 249 2.17e-28 112
Msa0843240 MtrunA17_Chr4g0050931 25.680 331 198 5 3 325 8 298 3.20e-28 112
Msa0843240 MtrunA17_Chr5g0429001 28.099 242 163 2 92 325 36 274 8.57e-28 110
Msa0843240 MtrunA17_Chr5g0404811 26.636 214 155 1 120 331 6 219 3.28e-24 99.4
Msa0843240 MtrunA17_Chr8g0334711 32.642 193 126 3 12 202 15 205 4.23e-22 92.8
Msa0843240 MtrunA17_Chr6g0451181 49.485 97 49 0 24 120 29 125 3.54e-20 85.1
Msa0843240 MtrunA17_Chr6g0451241 56.923 65 28 0 262 326 16 80 1.47e-19 83.2
Msa0843240 MtrunA17_Chr2g0278021 30.047 213 140 3 121 325 1 212 3.05e-19 86.3
Msa0843240 MtrunA17_Chr8g0334721 35.185 108 70 0 218 325 2 109 9.54e-17 76.6
Msa0843240 MtrunA17_Chr5g0404801 35.537 121 76 2 1 120 1 120 5.07e-14 68.2
Msa0843240 MtrunA17_Chr1g0172891 30.000 90 58 1 259 343 12 101 2.96e-11 60.1
Msa0843240 MtrunA17_Chr1g0177231 28.125 96 64 1 253 343 28 123 5.72e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0843240 AT5G40240.1 43.491 338 186 2 10 342 22 359 1.08e-86 266
Msa0843240 AT5G40240.3 43.491 338 186 2 10 342 22 359 1.08e-86 266
Msa0843240 AT5G40240.2 43.491 338 186 2 10 342 36 373 2.43e-86 265
Msa0843240 AT5G40230.1 43.149 343 174 3 12 341 25 359 7.26e-84 259
Msa0843240 AT5G40210.1 45.231 325 159 5 4 327 10 316 4.97e-81 250
Msa0843240 AT3G28050.1 46.082 319 166 3 8 325 13 326 5.76e-80 248
Msa0843240 AT3G28080.1 40.169 356 187 6 4 343 11 356 7.33e-70 222
Msa0843240 AT4G15540.1 42.500 320 168 3 12 328 21 327 4.14e-69 220
Msa0843240 AT4G15540.2 42.500 320 168 3 12 328 21 327 4.14e-69 220
Msa0843240 AT3G28100.1 41.194 335 176 5 4 327 11 335 8.97e-69 219
Msa0843240 AT3G28130.2 40.634 347 196 6 4 343 9 352 9.71e-64 206
Msa0843240 AT3G28070.1 42.693 349 187 7 4 343 14 358 1.32e-63 206
Msa0843240 AT3G28080.2 39.118 340 174 6 20 343 26 348 2.21e-62 202
Msa0843240 AT2G39510.1 36.335 322 200 5 11 329 11 330 5.59e-57 189
Msa0843240 AT3G28080.5 38.889 270 140 5 90 343 7 267 1.99e-56 185
Msa0843240 AT3G28080.7 38.889 270 140 5 90 343 7 267 1.99e-56 185
Msa0843240 AT3G28080.8 38.889 270 140 5 90 343 7 267 1.99e-56 185
Msa0843240 AT3G28080.6 38.889 270 140 5 90 343 7 267 1.99e-56 185
Msa0843240 AT3G28070.2 42.748 262 138 6 91 343 8 266 2.58e-56 184
Msa0843240 AT5G07050.1 35.152 330 203 6 12 331 22 350 5.56e-56 187
Msa0843240 AT3G18200.2 32.047 337 217 5 1 332 28 357 2.97e-55 185
Msa0843240 AT3G28130.5 41.923 260 141 6 91 343 10 266 9.60e-54 178
Msa0843240 AT3G28130.1 41.923 260 141 6 91 343 10 266 9.60e-54 178
Msa0843240 AT3G28070.3 42.623 305 166 6 4 303 14 314 4.28e-51 172
Msa0843240 AT1G21890.1 30.931 333 217 4 12 333 15 345 2.35e-49 170
Msa0843240 AT4G08300.1 31.098 328 217 4 12 333 15 339 7.85e-49 168
Msa0843240 AT4G08290.1 32.390 318 209 4 12 325 17 332 1.30e-48 168
Msa0843240 AT1G09380.1 32.407 324 197 4 12 322 12 326 2.91e-48 167
Msa0843240 AT3G28080.3 36.311 347 144 7 12 343 18 302 8.58e-48 163
Msa0843240 AT3G30340.1 30.818 318 211 4 23 335 26 339 3.38e-47 164
Msa0843240 AT1G75500.1 30.499 341 226 5 2 333 14 352 5.94e-47 164
Msa0843240 AT1G75500.2 30.499 341 226 5 2 333 14 352 5.94e-47 164
Msa0843240 AT1G44800.1 29.630 324 224 4 12 333 15 336 2.12e-46 162
Msa0843240 AT1G70260.1 32.087 321 205 7 25 333 29 348 7.69e-46 160
Msa0843240 AT2G37460.1 31.611 329 212 6 3 325 10 331 1.93e-45 159
Msa0843240 AT4G01440.1 28.662 314 222 2 23 335 25 337 4.31e-45 158
Msa0843240 AT5G64700.1 33.016 315 202 5 27 333 27 340 1.10e-44 157
Msa0843240 AT4G30420.2 31.611 329 216 6 3 325 4 329 1.44e-44 157
Msa0843240 AT4G30420.1 31.875 320 209 6 12 325 3 319 2.10e-44 156
Msa0843240 AT2G40900.1 32.024 331 206 7 4 327 7 325 2.54e-44 157
Msa0843240 AT5G13670.1 30.723 332 221 6 1 326 1 329 3.89e-43 153
Msa0843240 AT3G28080.9 35.565 239 129 5 121 343 1 230 1.22e-42 148
Msa0843240 AT3G28070.5 39.224 232 129 6 121 343 1 229 2.55e-42 147
Msa0843240 AT3G56620.1 30.938 320 215 5 4 322 7 321 2.92e-41 148
Msa0843240 AT3G53210.1 28.909 339 224 5 4 333 6 336 5.88e-41 147
Msa0843240 AT4G28040.1 31.361 338 206 8 1 328 1 322 1.26e-40 146
Msa0843240 AT4G28040.5 31.361 338 206 8 1 328 1 322 1.26e-40 146
Msa0843240 AT4G28040.3 31.361 338 206 8 1 328 1 322 1.26e-40 146
Msa0843240 AT4G28040.4 31.361 338 206 8 1 328 1 322 1.26e-40 146
Msa0843240 AT4G28040.2 31.361 338 206 8 1 328 1 322 1.26e-40 146
Msa0843240 AT3G28130.3 38.696 230 131 6 121 343 1 227 1.51e-40 142
Msa0843240 AT1G43650.1 31.546 317 212 4 12 327 11 323 1.85e-40 145
Msa0843240 AT1G21890.2 31.023 303 196 4 12 303 15 315 2.98e-40 145
Msa0843240 AT3G28100.3 38.258 264 143 4 4 256 11 265 7.10e-40 142
Msa0843240 AT1G68170.2 31.642 335 205 5 4 325 10 333 6.03e-39 142
Msa0843240 AT1G68170.1 31.498 327 201 4 12 325 7 323 9.27e-39 141
Msa0843240 AT4G01440.3 28.772 285 201 2 23 306 25 308 1.05e-37 137
Msa0843240 AT1G60050.1 30.864 324 206 7 25 333 30 350 2.87e-37 137
Msa0843240 AT2G37450.2 31.132 318 189 5 12 325 13 304 3.16e-37 137
Msa0843240 AT3G18200.1 32.189 233 148 3 104 332 1 227 4.04e-37 134
Msa0843240 AT5G45370.1 29.503 322 213 5 10 329 22 331 5.50e-36 134
Msa0843240 AT3G45870.1 29.268 328 220 2 4 320 8 334 6.09e-36 134
Msa0843240 AT4G01430.1 29.154 319 212 8 23 332 24 337 2.31e-35 132
Msa0843240 AT1G25270.1 30.312 320 219 3 12 328 7 325 2.66e-35 132
Msa0843240 AT5G45370.2 28.869 336 221 6 10 329 22 355 3.65e-35 132
Msa0843240 AT5G45370.4 28.869 336 221 6 10 329 22 355 3.65e-35 132
Msa0843240 AT5G47470.1 28.818 347 232 6 2 339 24 364 5.99e-35 131
Msa0843240 AT5G47470.2 28.818 347 232 6 2 339 52 392 9.76e-35 131
Msa0843240 AT3G28080.4 33.824 272 103 7 87 343 4 213 1.80e-34 126
Msa0843240 AT3G28130.4 39.286 252 146 4 4 250 9 258 2.44e-34 127
Msa0843240 AT4G01440.5 29.075 227 161 0 109 335 3 229 2.64e-34 127
Msa0843240 AT4G01440.2 29.075 227 161 0 109 335 3 229 2.64e-34 127
Msa0843240 AT4G08290.2 32.824 262 163 5 3 253 1 260 4.71e-34 127
Msa0843240 AT5G47470.3 28.144 334 231 4 2 332 52 379 5.75e-34 129
Msa0843240 AT1G01070.1 28.754 313 213 6 23 329 31 339 4.49e-33 126
Msa0843240 AT4G19185.1 28.829 333 219 4 12 328 25 355 3.74e-32 124
Msa0843240 AT1G01070.2 28.808 302 199 7 34 329 1 292 2.54e-31 120
Msa0843240 AT3G30340.2 32.203 236 151 4 23 253 26 257 4.48e-31 119
Msa0843240 AT3G45870.8 29.167 312 207 4 4 303 8 317 8.12e-31 119
Msa0843240 AT3G28100.2 40.952 210 105 3 4 203 11 211 1.10e-30 117
Msa0843240 AT3G53210.2 28.800 250 163 3 92 333 37 279 1.37e-30 118
Msa0843240 AT1G11450.3 27.213 305 218 4 23 325 31 333 1.13e-29 117
Msa0843240 AT2G37450.3 32.489 237 151 3 93 325 1 232 1.25e-29 114
Msa0843240 AT4G01450.2 28.947 304 210 3 23 325 25 323 2.33e-29 116
Msa0843240 AT4G01430.2 30.000 290 189 8 23 303 24 308 4.53e-29 114
Msa0843240 AT4G01450.1 28.723 282 195 3 23 303 25 301 1.49e-28 113
Msa0843240 AT1G11450.2 27.599 279 198 4 51 327 8 284 6.05e-28 111
Msa0843240 AT1G11450.5 27.599 279 198 4 51 327 15 291 8.38e-28 110
Msa0843240 AT4G01440.4 29.185 233 163 2 22 253 24 255 2.73e-27 108
Msa0843240 AT1G11460.1 27.184 309 214 8 23 325 31 334 2.83e-27 110
Msa0843240 AT3G28130.6 43.216 199 107 3 12 206 17 213 5.33e-27 106
Msa0843240 AT5G64700.2 34.188 234 145 5 27 252 27 259 5.81e-27 107
Msa0843240 AT3G53210.3 29.323 266 170 6 4 259 6 263 6.78e-27 107
Msa0843240 AT4G19185.2 28.185 259 168 4 86 328 21 277 2.25e-26 107
Msa0843240 AT1G11450.1 28.099 242 172 2 85 325 1 241 5.88e-26 104
Msa0843240 AT4G01450.4 30.131 229 154 3 23 250 25 248 6.19e-26 104
Msa0843240 AT5G45370.6 27.953 254 167 4 91 329 1 253 9.36e-25 102
Msa0843240 AT5G45370.5 27.953 254 167 4 91 329 1 253 9.36e-25 102
Msa0843240 AT1G11450.4 26.502 283 204 4 23 303 31 311 1.53e-23 99.4
Msa0843240 AT1G43650.2 31.559 263 174 5 1 262 1 258 4.64e-23 97.1
Msa0843240 AT4G01450.3 31.551 187 122 3 23 208 25 206 2.27e-22 94.7
Msa0843240 AT3G45870.9 28.409 264 176 3 4 256 8 269 1.82e-21 92.8
Msa0843240 AT2G37450.1 29.858 211 139 3 119 325 60 265 4.81e-21 92.0
Msa0843240 AT4G16620.1 24.425 348 248 5 6 343 10 352 3.32e-20 90.9
Msa0843240 AT3G45870.5 27.830 212 141 2 120 320 49 259 3.33e-20 90.1
Msa0843240 AT3G28060.1 42.017 119 53 4 193 303 44 154 8.74e-19 82.4
Msa0843240 AT4G24980.1 27.347 245 129 9 86 328 44 241 6.40e-18 82.8
Msa0843240 AT4G16620.4 26.848 257 174 4 96 343 4 255 1.14e-17 82.0
Msa0843240 AT4G16620.2 26.848 257 174 4 96 343 4 255 1.14e-17 82.0
Msa0843240 AT4G01430.3 27.861 201 134 5 136 329 1 197 2.57e-17 80.5
Msa0843240 AT5G45370.3 26.906 223 147 4 122 329 74 295 8.14e-17 80.5
Msa0843240 AT3G45870.6 26.667 195 131 2 120 303 49 242 1.73e-15 75.5
Msa0843240 AT3G45870.7 26.667 195 131 2 120 303 49 242 1.73e-15 75.5
Msa0843240 AT3G45870.2 28.873 142 100 1 179 320 43 183 2.67e-13 68.9

Find 78 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAAATCAGATTGGATATT+TGG 0.133748 5_4:+20871753 Msa0843240:CDS
TCACTCCCACTTCAAGAATT+TGG 0.197856 5_4:-20870344 None:intergenic
CAGAGGGAAATTCAAAAGTT+TGG 0.240714 5_4:+20872073 Msa0843240:CDS
AGTCGCCTAGGCATCTATTT+TGG 0.261433 5_4:-20873085 None:intergenic
CATAAAATTGAGGATGAAAT+TGG 0.268466 5_4:-20870584 None:intergenic
ATATACAGACTTGGATTATA+AGG 0.278808 5_4:+20871971 Msa0843240:intron
GAGTGTTACCACCCACTTCT+AGG 0.278870 5_4:-20870439 None:intergenic
GCCTTTCAAAATATAGATAT+TGG 0.282976 5_4:+20871708 Msa0843240:CDS
CTTGTTACCACTAGCTCTTC+AGG 0.295870 5_4:-20872000 None:intergenic
AGCAGCCAAGCTAAAATAAT+TGG 0.302050 5_4:+20871618 Msa0843240:CDS
GGGAGTGAGAACAAGGAAAT+TGG 0.304823 5_4:+20870359 Msa0843240:five_prime_UTR
GGCACAGTGGTCTCCATTGC+AGG 0.326321 5_4:+20871639 Msa0843240:CDS
ACTTATTGTTGCAGCATGAT+TGG 0.348960 5_4:+20872964 Msa0843240:intron
TTAACTGTGACATTATATAA+AGG 0.353485 5_4:+20871666 Msa0843240:CDS
TCATACTTGCTTTAATTTCA+AGG 0.356799 5_4:+20870903 Msa0843240:CDS
TTGAACATAGCTACATATAT+TGG 0.366626 5_4:-20872773 None:intergenic
TTTGGATTCTCAGACCTGAT+AGG 0.386129 5_4:+20872091 Msa0843240:CDS
ACCTTTCAGTTAAATCAGAT+TGG 0.389374 5_4:+20871745 Msa0843240:CDS
CATATATTGGTCCTTTCTTA+CGG 0.398364 5_4:-20872760 None:intergenic
TATACAGACTTGGATTATAA+GGG 0.409549 5_4:+20871972 Msa0843240:intron
AATATAGATATTGGAGGAAG+TGG 0.416383 5_4:+20871717 Msa0843240:CDS
AAAGGAAACATAGAGCAAAA+AGG 0.418237 5_4:-20870520 None:intergenic
TTAGGAGACAGTCTTTATCT+TGG 0.419263 5_4:+20872839 Msa0843240:CDS
ATCAAATCAGCCACCAATGA+TGG 0.421771 5_4:+20870464 Msa0843240:CDS
ACAGCTACCAACTCCCTATC+AGG 0.429577 5_4:-20872105 None:intergenic
TGAAAGGCGTTACTAATCAA+TGG 0.433685 5_4:-20871693 None:intergenic
AGTGCAATGACCATTCCTAA+TGG 0.441266 5_4:-20872797 None:intergenic
ATGGTCATTGCACTTGGCAT+GGG 0.447042 5_4:+20872806 Msa0843240:CDS
GTGCAATGACCATTCCTAAT+GGG 0.462955 5_4:-20872796 None:intergenic
TAACTGTGACATTATATAAA+GGG 0.467351 5_4:+20871667 Msa0843240:CDS
TTATGCTGTTATGTGGGCAC+AGG 0.468522 5_4:+20873011 Msa0843240:CDS
GTAGCTATGTTCAACCCATT+AGG 0.469889 5_4:+20872782 Msa0843240:CDS
AGGAAACCAAATTCTTGAAG+TGG 0.470517 5_4:+20870338 Msa0843240:five_prime_UTR
AATGGTCATTGCACTTGGCA+TGG 0.477969 5_4:+20872805 Msa0843240:CDS
GCAAGTATGAAGGTAAAAGC+AGG 0.494725 5_4:-20870890 None:intergenic
TTGGATTCTCAGACCTGATA+GGG 0.506332 5_4:+20872092 Msa0843240:CDS
TGCAGTTCAATTCCTAGAAG+TGG 0.506993 5_4:+20870427 Msa0843240:CDS
ATTATTAAAATCAACAGATA+AGG 0.515479 5_4:+20870318 Msa0843240:five_prime_UTR
GGAGCTGCTATAATAGCCAT+TGG 0.524019 5_4:+20872985 Msa0843240:CDS
TGAAATTAAAGCAAGTATGA+AGG 0.529601 5_4:-20870900 None:intergenic
TTAGGAATGGTCATTGCACT+TGG 0.530569 5_4:+20872800 Msa0843240:CDS
GAGACAGTCTTTATCTTGGA+AGG 0.531920 5_4:+20872843 Msa0843240:CDS
GCACAGTGGTCTCCATTGCA+GGG 0.543263 5_4:+20871640 Msa0843240:CDS
AAAATTGAGGATGAAATTGG+AGG 0.543678 5_4:-20870581 None:intergenic
CACAGTTAATGCCCCTGCAA+TGG 0.548584 5_4:-20871652 None:intergenic
TCCAATCTGATTTAACTGAA+AGG 0.550159 5_4:-20871746 None:intergenic
ACATGGGCATTCCGTAAGAA+AGG 0.551083 5_4:+20872749 Msa0843240:CDS
TGGTCATTGCACTTGGCATG+GGG 0.551730 5_4:+20872807 Msa0843240:CDS
CACAGTGGTCTCCATTGCAG+GGG 0.557629 5_4:+20871641 Msa0843240:CDS
TTTCAAAATATAGATATTGG+AGG 0.562558 5_4:+20871711 Msa0843240:CDS
AATACTCATTCCATCATTGG+TGG 0.565236 5_4:-20870474 None:intergenic
TTGAAGTGGGAGTGAGAACA+AGG 0.567149 5_4:+20870352 Msa0843240:five_prime_UTR
TGAAGGTAAAAGCAGGGAGA+AGG 0.572430 5_4:-20870883 None:intergenic
GCAGTTCAATTCCTAGAAGT+GGG 0.574665 5_4:+20870428 Msa0843240:CDS
AGCATAGCAGATGCTAGTGT+GGG 0.575963 5_4:-20870857 None:intergenic
GTCAACCAAAATAGATGCCT+AGG 0.576691 5_4:+20873080 Msa0843240:CDS
AAGCATAGCAGATGCTAGTG+TGG 0.579129 5_4:-20870858 None:intergenic
ATTGAGGATGAAATTGGAGG+AGG 0.581877 5_4:-20870578 None:intergenic
AGTGAGAACAAGGAAATTGG+AGG 0.582740 5_4:+20870362 Msa0843240:five_prime_UTR
GGAAACCAAATTCTTGAAGT+GGG 0.583333 5_4:+20870339 Msa0843240:five_prime_UTR
CAAGTATGAAGGTAAAAGCA+GGG 0.587024 5_4:-20870889 None:intergenic
TCTCAGACCTGATAGGGAGT+TGG 0.589811 5_4:+20872098 Msa0843240:CDS
TATGTTCAACCCATTAGGAA+TGG 0.601626 5_4:+20872787 Msa0843240:CDS
TGAGGAGTGTTGTATACACA+TGG 0.602238 5_4:+20872732 Msa0843240:CDS
AGCAAGTGTAACAGCAACAA+TGG 0.605117 5_4:+20870403 Msa0843240:CDS
CATAACAGCATAAAATCCAA+TGG 0.605333 5_4:-20873001 None:intergenic
GGATTATCCTGAAGAGCTAG+TGG 0.609543 5_4:+20871993 Msa0843240:CDS
TATGTGGGCACAGGCTCAAG+AGG 0.617968 5_4:+20873020 Msa0843240:CDS
TCATTTATAGGCAATTTGTG+TGG 0.623525 5_4:+20872703 Msa0843240:intron
ATTGTAGCTCTCATTGCAGA+GGG 0.632720 5_4:+20872057 Msa0843240:CDS
AACAAGCATTTGTTGCAGCA+TGG 0.633651 5_4:+20872017 Msa0843240:CDS
GGTCATTGCACTTGGCATGG+GGG 0.659646 5_4:+20872808 Msa0843240:CDS
AATTGTAGCTCTCATTGCAG+AGG 0.661606 5_4:+20872056 Msa0843240:CDS
CAATTTGTGTGGTATCAATG+AGG 0.677875 5_4:+20872714 Msa0843240:CDS
AGCTAAAATAATTGGCACAG+TGG 0.680195 5_4:+20871626 Msa0843240:CDS
AAGCATTTGTTGCAGCATGG+TGG 0.684295 5_4:+20872020 Msa0843240:CDS
GTTCAATTCCTAGAAGTGGG+TGG 0.702602 5_4:+20870431 Msa0843240:CDS
GAGGAGTGTTGTATACACAT+GGG 0.704060 5_4:+20872733 Msa0843240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATATTATTATGTACA+TGG + chr5_4:20871147-20871166 Msa0843240:intron 10.0%
!!! ATAAAAGCATAAATAATTAA+TGG + chr5_4:20871172-20871191 Msa0843240:intron 10.0%
!! AAAAATTATATATTTAGTTG+TGG + chr5_4:20871398-20871417 Msa0843240:intron 10.0%
!! AAAAAAACAGAAAAATAATT+TGG + chr5_4:20871543-20871562 Msa0843240:intron 10.0%
!!! TTAGATTATTTCTAATAAAT+TGG - chr5_4:20872897-20872916 None:intergenic 10.0%
!! ATTATTAAAATCAACAGATA+AGG + chr5_4:20870318-20870337 Msa0843240:five_prime_UTR 15.0%
!! AAAAATTCTACATAAAATTG+AGG - chr5_4:20870597-20870616 None:intergenic 15.0%
!!! TCAAAGTAAATATTTTTGTA+TGG + chr5_4:20870706-20870725 Msa0843240:intron 15.0%
!! TATGAATTTAGTTGTATAAA+AGG + chr5_4:20870730-20870749 Msa0843240:intron 15.0%
!!! TACAATATTTTTTATACAAG+AGG - chr5_4:20872252-20872271 None:intergenic 15.0%
!!! ATAAACCTTTATTTGAATAA+AGG + chr5_4:20872583-20872602 Msa0843240:intron 15.0%
!! TTAAAATGAAAATGTTAGTA+TGG - chr5_4:20872934-20872953 None:intergenic 15.0%
!!! TCTTTTTCTATGGTAAAAAA+AGG - chr5_4:20870555-20870574 None:intergenic 20.0%
!! AGGAAATTTATGTGAAAATT+TGG + chr5_4:20870750-20870769 Msa0843240:intron 20.0%
!! GATATATTTCAATCATTGAT+TGG + chr5_4:20871477-20871496 Msa0843240:intron 20.0%
!!! ATTTTTCTGTTTTTTTTGCA+AGG - chr5_4:20871539-20871558 None:intergenic 20.0%
!! TTAACTGTGACATTATATAA+AGG + chr5_4:20871666-20871685 Msa0843240:CDS 20.0%
!! TAACTGTGACATTATATAAA+GGG + chr5_4:20871667-20871686 Msa0843240:CDS 20.0%
!!! TCCAATATCTATATTTTGAA+AGG - chr5_4:20871712-20871731 None:intergenic 20.0%
!! TTTCAAAATATAGATATTGG+AGG + chr5_4:20871711-20871730 Msa0843240:CDS 20.0%
!! TTCAAAAAGATTTATTTACC+TGG - chr5_4:20871830-20871849 None:intergenic 20.0%
!!! GGCATTGATATTTTTAAAAA+TGG + chr5_4:20871889-20871908 Msa0843240:intron 20.0%
!! TCTTATCATGTTGATATTTA+TGG + chr5_4:20872404-20872423 Msa0843240:intron 20.0%
!!! ATGCATTACAACTTTAAAAT+CGG + chr5_4:20872634-20872653 Msa0843240:intron 20.0%
!! GAATTATAATTTAACCAATG+TGG + chr5_4:20872664-20872683 Msa0843240:intron 20.0%
! AAAAATACTCATTCCATCAT+TGG - chr5_4:20870480-20870499 None:intergenic 25.0%
! CATAAAATTGAGGATGAAAT+TGG - chr5_4:20870587-20870606 None:intergenic 25.0%
!! ATAAAATTTGTTCATACCTG+AGG - chr5_4:20870631-20870650 None:intergenic 25.0%
! TGAAATTAAAGCAAGTATGA+AGG - chr5_4:20870903-20870922 None:intergenic 25.0%
!! TCATACTTGCTTTAATTTCA+AGG + chr5_4:20870903-20870922 Msa0843240:CDS 25.0%
!! GCAAAATCATCAATTTTTCA+GGG - chr5_4:20871224-20871243 None:intergenic 25.0%
!! AGCAAAATCATCAATTTTTC+AGG - chr5_4:20871225-20871244 None:intergenic 25.0%
!!! TTTTATACCCCTTTTTGAAA+AGG + chr5_4:20871244-20871263 Msa0843240:intron 25.0%
!! AAAGATTCCTTTTCAAAAAG+GGG - chr5_4:20871254-20871273 None:intergenic 25.0%
!! CAAAGATTCCTTTTCAAAAA+GGG - chr5_4:20871255-20871274 None:intergenic 25.0%
!! ACAAAGATTCCTTTTCAAAA+AGG - chr5_4:20871256-20871275 None:intergenic 25.0%
!! TTTTTGCAAGGATTAAAGAA+GGG - chr5_4:20871527-20871546 None:intergenic 25.0%
!!! TTTTTTGCAAGGATTAAAGA+AGG - chr5_4:20871528-20871547 None:intergenic 25.0%
! GCCTTTCAAAATATAGATAT+TGG + chr5_4:20871708-20871727 Msa0843240:CDS 25.0%
! GTTAAATCAGATTGGATATT+TGG + chr5_4:20871753-20871772 Msa0843240:CDS 25.0%
! TATAATCCAAGTCTGTATAT+CGG - chr5_4:20871971-20871990 None:intergenic 25.0%
! ATATACAGACTTGGATTATA+AGG + chr5_4:20871971-20871990 Msa0843240:intron 25.0%
! TATACAGACTTGGATTATAA+GGG + chr5_4:20871972-20871991 Msa0843240:intron 25.0%
!!! GTGTCATTAATGGTTTTATA+CGG + chr5_4:20872368-20872387 Msa0843240:intron 25.0%
! ACATGATAAGATATGATTAG+AGG - chr5_4:20872395-20872414 None:intergenic 25.0%
! ATTGTGGATGAAAAAAATGT+TGG - chr5_4:20872555-20872574 None:intergenic 25.0%
! AGGTTTATGTTCAAATATTG+TGG - chr5_4:20872571-20872590 None:intergenic 25.0%
! TGATGCCTTTATTCAAATAA+AGG - chr5_4:20872591-20872610 None:intergenic 25.0%
! TTGAACATAGCTACATATAT+TGG - chr5_4:20872776-20872795 None:intergenic 25.0%
AAAGGAAACATAGAGCAAAA+AGG - chr5_4:20870523-20870542 None:intergenic 30.0%
! AAAAAAAGGTGCATGGTAAA+AGG - chr5_4:20870541-20870560 None:intergenic 30.0%
AAAATTGAGGATGAAATTGG+AGG - chr5_4:20870584-20870603 None:intergenic 30.0%
!! GTGCAGATTTTAACGAATAT+TGG + chr5_4:20870818-20870837 Msa0843240:CDS 30.0%
TCCACTAACATCTATGATTT+GGG - chr5_4:20870994-20871013 None:intergenic 30.0%
TTCCACTAACATCTATGATT+TGG - chr5_4:20870995-20871014 None:intergenic 30.0%
AAATCATAGATGTTAGTGGA+AGG + chr5_4:20870994-20871013 Msa0843240:intron 30.0%
! TTTTCCAGTAGAACTACAAA+TGG - chr5_4:20871330-20871349 None:intergenic 30.0%
AATATAGATATTGGAGGAAG+TGG + chr5_4:20871717-20871736 Msa0843240:CDS 30.0%
ACCTTTCAGTTAAATCAGAT+TGG + chr5_4:20871745-20871764 Msa0843240:CDS 30.0%
TCCAATCTGATTTAACTGAA+AGG - chr5_4:20871749-20871768 None:intergenic 30.0%
! TTCTGTTTTGTATATTGTCC+AGG + chr5_4:20871809-20871828 Msa0843240:CDS 30.0%
TTGTATGCAATGTCATTGAA+AGG + chr5_4:20872201-20872220 Msa0843240:intron 30.0%
ATTGCGTACAATACACAAAA+TGG + chr5_4:20872278-20872297 Msa0843240:intron 30.0%
CATATATAGAGTTTGGGAAA+GGG - chr5_4:20872309-20872328 None:intergenic 30.0%
ACATATATAGAGTTTGGGAA+AGG - chr5_4:20872310-20872329 None:intergenic 30.0%
CTCTCACATATATAGAGTTT+GGG - chr5_4:20872315-20872334 None:intergenic 30.0%
ACTCTCACATATATAGAGTT+TGG - chr5_4:20872316-20872335 None:intergenic 30.0%
TAATGACACTGCATAGAAAA+AGG - chr5_4:20872357-20872376 None:intergenic 30.0%
! TTTCTATGCAGTGTCATTAA+TGG + chr5_4:20872358-20872377 Msa0843240:intron 30.0%
TAATTTAACCAATGTGGAGA+CGG + chr5_4:20872670-20872689 Msa0843240:intron 30.0%
TCATTTATAGGCAATTTGTG+TGG + chr5_4:20872703-20872722 Msa0843240:intron 30.0%
CATATATTGGTCCTTTCTTA+CGG - chr5_4:20872763-20872782 None:intergenic 30.0%
CATAACAGCATAAAATCCAA+TGG - chr5_4:20873004-20873023 None:intergenic 30.0%
! TTGGATTTTATGCTGTTATG+TGG + chr5_4:20873004-20873023 Msa0843240:CDS 30.0%
! TGGATTTTATGCTGTTATGT+GGG + chr5_4:20873005-20873024 Msa0843240:CDS 30.0%
AGGAAACCAAATTCTTGAAG+TGG + chr5_4:20870338-20870357 Msa0843240:five_prime_UTR 35.0%
GGAAACCAAATTCTTGAAGT+GGG + chr5_4:20870339-20870358 Msa0843240:five_prime_UTR 35.0%
CAAGGAAATTGGAGGAAAAA+TGG + chr5_4:20870370-20870389 Msa0843240:exon 35.0%
AATACTCATTCCATCATTGG+TGG - chr5_4:20870477-20870496 None:intergenic 35.0%
! CTATGGTAAAAAAAGGTGCA+TGG - chr5_4:20870548-20870567 None:intergenic 35.0%
! TTTTTCTTCTTAGTTGCCTC+AGG + chr5_4:20870612-20870631 Msa0843240:CDS 35.0%
! ATTTTCTCCTTCAAATCCTC+CGG + chr5_4:20870672-20870691 Msa0843240:intron 35.0%
CAAGTATGAAGGTAAAAGCA+GGG - chr5_4:20870892-20870911 None:intergenic 35.0%
ACCCAAATCATAGATGTTAG+TGG + chr5_4:20870990-20871009 Msa0843240:intron 35.0%
! TATGCCATTTGTAGTTCTAC+TGG + chr5_4:20871323-20871342 Msa0843240:intron 35.0%
!!! TTATTTTAGCTTGGCTGCTA+TGG - chr5_4:20871617-20871636 None:intergenic 35.0%
AGCAGCCAAGCTAAAATAAT+TGG + chr5_4:20871618-20871637 Msa0843240:CDS 35.0%
!!! CTGTGCCAATTATTTTAGCT+TGG - chr5_4:20871626-20871645 None:intergenic 35.0%
AGCTAAAATAATTGGCACAG+TGG + chr5_4:20871626-20871645 Msa0843240:CDS 35.0%
!! TGAAAGGCGTTACTAATCAA+TGG - chr5_4:20871696-20871715 None:intergenic 35.0%
!! TAAATTCCCAATTTGCTGCA+AGG - chr5_4:20871929-20871948 None:intergenic 35.0%
CAGAGGGAAATTCAAAAGTT+TGG + chr5_4:20872073-20872092 Msa0843240:CDS 35.0%
CAATGTCATTGAAAGGTCAA+TGG + chr5_4:20872208-20872227 Msa0843240:intron 35.0%
CGTACAATACACAAAATGGT+AGG + chr5_4:20872282-20872301 Msa0843240:intron 35.0%
TGCATAGAAAAAGGACAACA+TGG - chr5_4:20872348-20872367 None:intergenic 35.0%
! GGTGTGGTTGTTTCATTTAT+AGG + chr5_4:20872691-20872710 Msa0843240:intron 35.0%
CAATTTGTGTGGTATCAATG+AGG + chr5_4:20872714-20872733 Msa0843240:CDS 35.0%
TATGTTCAACCCATTAGGAA+TGG + chr5_4:20872787-20872806 Msa0843240:CDS 35.0%
TTAGGAGACAGTCTTTATCT+TGG + chr5_4:20872839-20872858 Msa0843240:CDS 35.0%
ACTTATTGTTGCAGCATGAT+TGG + chr5_4:20872964-20872983 Msa0843240:intron 35.0%
TCACTCCCACTTCAAGAATT+TGG - chr5_4:20870347-20870366 None:intergenic 40.0%
AGTGAGAACAAGGAAATTGG+AGG + chr5_4:20870362-20870381 Msa0843240:five_prime_UTR 40.0%
AGCAAGTGTAACAGCAACAA+TGG + chr5_4:20870403-20870422 Msa0843240:CDS 40.0%
TGCAGTTCAATTCCTAGAAG+TGG + chr5_4:20870427-20870446 Msa0843240:CDS 40.0%
GCAGTTCAATTCCTAGAAGT+GGG + chr5_4:20870428-20870447 Msa0843240:CDS 40.0%
ATCAAATCAGCCACCAATGA+TGG + chr5_4:20870464-20870483 Msa0843240:CDS 40.0%
! GAGGAGGAGATCTTTTTCTA+TGG - chr5_4:20870565-20870584 None:intergenic 40.0%
ATTGAGGATGAAATTGGAGG+AGG - chr5_4:20870581-20870600 None:intergenic 40.0%
TACTTTGACAACGATAGAGC+CGG - chr5_4:20870694-20870713 None:intergenic 40.0%
GCAAGTATGAAGGTAAAAGC+AGG - chr5_4:20870893-20870912 None:intergenic 40.0%
AGTGGAAGGTCTAACCATAT+CGG + chr5_4:20871008-20871027 Msa0843240:intron 40.0%
TACAATTGCCACATCCGATA+TGG - chr5_4:20871025-20871044 None:intergenic 40.0%
TCGGATGTGGCAATTGTATT+TGG + chr5_4:20871027-20871046 Msa0843240:intron 40.0%
TGATCACAATGTGCACTTTC+AGG + chr5_4:20871568-20871587 Msa0843240:intron 40.0%
CACTTACCTTGCAGCAAATT+GGG + chr5_4:20871920-20871939 Msa0843240:intron 40.0%
TTTCCACCGATATACAGACT+TGG + chr5_4:20871962-20871981 Msa0843240:intron 40.0%
AATCCAAGTCTGTATATCGG+TGG - chr5_4:20871968-20871987 None:intergenic 40.0%
! AACAAGCATTTGTTGCAGCA+TGG + chr5_4:20872017-20872036 Msa0843240:CDS 40.0%
AATTGTAGCTCTCATTGCAG+AGG + chr5_4:20872056-20872075 Msa0843240:CDS 40.0%
ATTGTAGCTCTCATTGCAGA+GGG + chr5_4:20872057-20872076 Msa0843240:CDS 40.0%
TTTGGATTCTCAGACCTGAT+AGG + chr5_4:20872091-20872110 Msa0843240:CDS 40.0%
TTGGATTCTCAGACCTGATA+GGG + chr5_4:20872092-20872111 Msa0843240:CDS 40.0%
CATTGAAAGGTCAATGGTTC+AGG + chr5_4:20872214-20872233 Msa0843240:intron 40.0%
!! TGAGGAGTGTTGTATACACA+TGG + chr5_4:20872732-20872751 Msa0843240:CDS 40.0%
!! GAGGAGTGTTGTATACACAT+GGG + chr5_4:20872733-20872752 Msa0843240:CDS 40.0%
GTAGCTATGTTCAACCCATT+AGG + chr5_4:20872782-20872801 Msa0843240:CDS 40.0%
GTGCAATGACCATTCCTAAT+GGG - chr5_4:20872799-20872818 None:intergenic 40.0%
AGTGCAATGACCATTCCTAA+TGG - chr5_4:20872800-20872819 None:intergenic 40.0%
TTAGGAATGGTCATTGCACT+TGG + chr5_4:20872800-20872819 Msa0843240:CDS 40.0%
! GGCATGGGGGTAATATTTTT+AGG + chr5_4:20872821-20872840 Msa0843240:CDS 40.0%
GAGACAGTCTTTATCTTGGA+AGG + chr5_4:20872843-20872862 Msa0843240:CDS 40.0%
!!! TATTTTGGTTGACAGCAGAG+GGG - chr5_4:20873073-20873092 None:intergenic 40.0%
!!! CTATTTTGGTTGACAGCAGA+GGG - chr5_4:20873074-20873093 None:intergenic 40.0%
!!! TCTATTTTGGTTGACAGCAG+AGG - chr5_4:20873075-20873094 None:intergenic 40.0%
TTGAAGTGGGAGTGAGAACA+AGG + chr5_4:20870352-20870371 Msa0843240:five_prime_UTR 45.0%
GGGAGTGAGAACAAGGAAAT+TGG + chr5_4:20870359-20870378 Msa0843240:five_prime_UTR 45.0%
GGAGGAAAAATGGTGATCGA+AGG + chr5_4:20870380-20870399 Msa0843240:exon 45.0%
GTTCAATTCCTAGAAGTGGG+TGG + chr5_4:20870431-20870450 Msa0843240:CDS 45.0%
GATTGATCTTGAGCTACCTG+TGG + chr5_4:20870780-20870799 Msa0843240:intron 45.0%
AGCATAGCAGATGCTAGTGT+GGG - chr5_4:20870860-20870879 None:intergenic 45.0%
AAGCATAGCAGATGCTAGTG+TGG - chr5_4:20870861-20870880 None:intergenic 45.0%
TGAAGGTAAAAGCAGGGAGA+AGG - chr5_4:20870886-20870905 None:intergenic 45.0%
AGGTCTAACCATATCGGATG+TGG + chr5_4:20871014-20871033 Msa0843240:intron 45.0%
CACAATGTGCACTTTCAGGA+TGG + chr5_4:20871572-20871591 Msa0843240:intron 45.0%
GCACTTACCTTGCAGCAAAT+TGG + chr5_4:20871919-20871938 Msa0843240:intron 45.0%
GGATTATCCTGAAGAGCTAG+TGG + chr5_4:20871993-20872012 Msa0843240:CDS 45.0%
! CTTGTTACCACTAGCTCTTC+AGG - chr5_4:20872003-20872022 None:intergenic 45.0%
! AAGCATTTGTTGCAGCATGG+TGG + chr5_4:20872020-20872039 Msa0843240:CDS 45.0%
ACATGGGCATTCCGTAAGAA+AGG + chr5_4:20872749-20872768 Msa0843240:CDS 45.0%
AATGGTCATTGCACTTGGCA+TGG + chr5_4:20872805-20872824 Msa0843240:CDS 45.0%
ATGGTCATTGCACTTGGCAT+GGG + chr5_4:20872806-20872825 Msa0843240:CDS 45.0%
GGAGCTGCTATAATAGCCAT+TGG + chr5_4:20872985-20873004 Msa0843240:CDS 45.0%
TTATGCTGTTATGTGGGCAC+AGG + chr5_4:20873011-20873030 Msa0843240:CDS 45.0%
!!! ATTTTGGTTGACAGCAGAGG+GGG - chr5_4:20873072-20873091 None:intergenic 45.0%
GAGTGTTACCACCCACTTCT+AGG - chr5_4:20870442-20870461 None:intergenic 50.0%
GATAGAGCCGGAGGATTTGA+AGG - chr5_4:20870682-20870701 None:intergenic 50.0%
TTTGACAACGATAGAGCCGG+AGG - chr5_4:20870691-20870710 None:intergenic 50.0%
CACAGTTAATGCCCCTGCAA+TGG - chr5_4:20871655-20871674 None:intergenic 50.0%
TTCTATGCGCGCAACTGTAG+AGG + chr5_4:20871868-20871887 Msa0843240:intron 50.0%
TCTCAGACCTGATAGGGAGT+TGG + chr5_4:20872098-20872117 Msa0843240:CDS 50.0%
ACAGCTACCAACTCCCTATC+AGG - chr5_4:20872108-20872127 None:intergenic 50.0%
AAGGTCAATGGTTCAGGTCG+TGG + chr5_4:20872220-20872239 Msa0843240:intron 50.0%
TAACCAATGTGGAGACGGTG+TGG + chr5_4:20872675-20872694 Msa0843240:intron 50.0%
TGGTCATTGCACTTGGCATG+GGG + chr5_4:20872807-20872826 Msa0843240:CDS 50.0%
CTGCAGTACTGCACAACCAC+AGG - chr5_4:20870799-20870818 None:intergenic 55.0%
GCACAGTGGTCTCCATTGCA+GGG + chr5_4:20871640-20871659 Msa0843240:CDS 55.0%
CACAGTGGTCTCCATTGCAG+GGG + chr5_4:20871641-20871660 Msa0843240:CDS 55.0%
CAACCACACCGTCTCCACAT+TGG - chr5_4:20872681-20872700 None:intergenic 55.0%
GGTCATTGCACTTGGCATGG+GGG + chr5_4:20872808-20872827 Msa0843240:CDS 55.0%
TATGTGGGCACAGGCTCAAG+AGG + chr5_4:20873020-20873039 Msa0843240:CDS 55.0%
GGCACAGTGGTCTCCATTGC+AGG + chr5_4:20871639-20871658 Msa0843240:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 20870317 20873101 20870317 ID=Msa0843240;Name=Msa0843240
chr5_4 mRNA 20870317 20873101 20870317 ID=Msa0843240-mRNA-1;Parent=Msa0843240;Name=Msa0843240-mRNA-1;_AED=0.26;_eAED=0.26;_QI=72|0.6|0.33|1|1|1|6|0|344
chr5_4 exon 20870317 20870633 20870317 ID=Msa0843240-mRNA-1:exon:8674;Parent=Msa0843240-mRNA-1
chr5_4 exon 20870811 20870924 20870811 ID=Msa0843240-mRNA-1:exon:8675;Parent=Msa0843240-mRNA-1
chr5_4 exon 20871590 20871830 20871590 ID=Msa0843240-mRNA-1:exon:8676;Parent=Msa0843240-mRNA-1
chr5_4 exon 20871979 20872137 20871979 ID=Msa0843240-mRNA-1:exon:8677;Parent=Msa0843240-mRNA-1
chr5_4 exon 20872713 20872864 20872713 ID=Msa0843240-mRNA-1:exon:8678;Parent=Msa0843240-mRNA-1
chr5_4 exon 20872978 20873101 20872978 ID=Msa0843240-mRNA-1:exon:8679;Parent=Msa0843240-mRNA-1
chr5_4 five_prime_UTR 20870317 20870388 20870317 ID=Msa0843240-mRNA-1:five_prime_utr;Parent=Msa0843240-mRNA-1
chr5_4 CDS 20870389 20870633 20870389 ID=Msa0843240-mRNA-1:cds;Parent=Msa0843240-mRNA-1
chr5_4 CDS 20870811 20870924 20870811 ID=Msa0843240-mRNA-1:cds;Parent=Msa0843240-mRNA-1
chr5_4 CDS 20871590 20871830 20871590 ID=Msa0843240-mRNA-1:cds;Parent=Msa0843240-mRNA-1
chr5_4 CDS 20871979 20872137 20871979 ID=Msa0843240-mRNA-1:cds;Parent=Msa0843240-mRNA-1
chr5_4 CDS 20872713 20872864 20872713 ID=Msa0843240-mRNA-1:cds;Parent=Msa0843240-mRNA-1
chr5_4 CDS 20872978 20873101 20872978 ID=Msa0843240-mRNA-1:cds;Parent=Msa0843240-mRNA-1
Gene Sequence

>Msa0843240

ATGGTGATCGAAGGAGCAAGTGTAACAGCAACAATGGTTGCAGTTCAATTCCTAGAAGTGGGTGGTAACACTCTGATCAAATCAGCCACCAATGATGGAATGAGTATTTTTGTTTTCACTTTTTACTCAAACCTTTTTGCTCTATGTTTCCTTTTACCATGCACCTTTTTTTACCATAGAAAAAGATCTCCTCCTCCAATTTCATCCTCAATTTTATGTAGAATTTTTCTTCTTAGTTGCCTCAGTACTGCAGTGCAGATTTTAACGAATATTGGAATTGAATGTAGCTCTCCCACACTAGCATCTGCTATGCTTGACCTTCTCCCTGCTTTTACCTTCATACTTGCTTTAATTTCAAGGATGGAAAATCTAAATCTGAAACACCATAGCAGCCAAGCTAAAATAATTGGCACAGTGGTCTCCATTGCAGGGGCATTAACTGTGACATTATATAAAGGGATACCATTGATTAGTAACGCCTTTCAAAATATAGATATTGGAGGAAGTGGAATTCACCTTTCAGTTAAATCAGATTGGATATTTGGTGCTTTTCTTCTTGCAACTGCTAGCTTTTGTCTTTCTGTTTTGTATATTGTCCAGACTTGGATTATAAGGGATTATCCTGAAGAGCTAGTGGTAACAAGCATTTGTTGCAGCATGGTGGTAATTCTATCTGCAATTGTAGCTCTCATTGCAGAGGGAAATTCAAAAGTTTGGATTCTCAGACCTGATAGGGAGTTGGTAGCTGTGTGTTATTCAGCAATTTGTGTGGTATCAATGAGGAGTGTTGTATACACATGGGCATTCCGTAAGAAAGGACCAATATATGTAGCTATGTTCAACCCATTAGGAATGGTCATTGCACTTGGCATGGGGGTAATATTTTTAGGAGACAGTCTTTATCTTGGAAGCATGATTGGAGCTGCTATAATAGCCATTGGATTTTATGCTGTTATGTGGGCACAGGCTCAAGAGGAAAACACAACATGTGAAAATAAATTTCCCCCTCTGCTGTCAACCAAAATAGATGCCTAG
Protein sequence

>Msa0843240

MVIEGASVTATMVAVQFLEVGGNTLIKSATNDGMSIFVFTFYSNLFALCFLLPCTFFYHRKRSPPPISSSILCRIFLLSCLSTAVQILTNIGIECSSPTLASAMLDLLPAFTFILALISRMENLNLKHHSSQAKIIGTVVSIAGALTVTLYKGIPLISNAFQNIDIGGSGIHLSVKSDWIFGAFLLATASFCLSVLYIVQTWIIRDYPEELVVTSICCSMVVILSAIVALIAEGNSKVWILRPDRELVAVCYSAICVVSMRSVVYTWAFRKKGPIYVAMFNPLGMVIALGMGVIFLGDSLYLGSMIGAAIIAIGFYAVMWAQAQEENTTCENKFPPLLSTKIDA*