Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844790 | XP_003613587.1 | 86.866 | 434 | 17 | 6 | 1 | 434 | 1 | 394 | 0.0 | 733 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844790 | sp|O64511|TLOV1_ARATH | 48.293 | 410 | 163 | 8 | 7 | 413 | 19 | 382 | 2.11e-117 | 351 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844790 | G7K9S4 | 86.041 | 437 | 15 | 6 | 1 | 434 | 1 | 394 | 0.0 | 669 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0614980 | Msa0844790 | 0.816173 | 6.337173e-52 | -8.615850e-47 |
| Msa0621780 | Msa0844790 | 0.803113 | 4.069348e-49 | -8.615850e-47 |
| Msa0705050 | Msa0844790 | 0.803824 | 2.898307e-49 | -8.615850e-47 |
| Msa0713210 | Msa0844790 | 0.804933 | 1.702484e-49 | -8.615850e-47 |
| Msa0715510 | Msa0844790 | -0.808267 | 3.369061e-50 | -8.615850e-47 |
| Msa0724730 | Msa0844790 | 0.833419 | 5.390916e-56 | -8.615850e-47 |
| Msa0754350 | Msa0844790 | 0.801393 | 9.195825e-49 | -8.615850e-47 |
| Msa0795710 | Msa0844790 | 0.803816 | 2.909599e-49 | -8.615850e-47 |
| Msa0260190 | Msa0844790 | 0.813867 | 2.059203e-51 | -8.615850e-47 |
| Msa0270460 | Msa0844790 | 0.802790 | 4.745399e-49 | -8.615850e-47 |
| Msa0295570 | Msa0844790 | 0.811715 | 6.095247e-51 | -8.615850e-47 |
| Msa0549330 | Msa0844790 | 0.813703 | 2.237749e-51 | -8.615850e-47 |
| Msa0580540 | Msa0844790 | 0.810112 | 1.355514e-50 | -8.615850e-47 |
| Msa0844760 | Msa0844790 | 0.937167 | 5.376585e-98 | -8.615850e-47 |
| Msa0844790 | Msa0984000 | 0.803267 | 3.781599e-49 | -8.615850e-47 |
| Msa0844790 | Msa1053690 | 0.816083 | 6.639807e-52 | -8.615850e-47 |
| Msa0844790 | Msa1211390 | 0.804136 | 2.497080e-49 | -8.615850e-47 |
| Msa0844790 | Msa1306200 | 0.800324 | 1.520565e-48 | -8.615850e-47 |
| Msa0844790 | Msa1349810 | 0.825001 | 5.946898e-54 | -8.615850e-47 |
| Msa0844790 | Msa1452200 | 0.802318 | 5.938208e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844790 | MtrunA17_Chr5g0415981 | 86.041 | 437 | 15 | 6 | 1 | 434 | 1 | 394 | 0.0 | 669 |
| Msa0844790 | MtrunA17_Chr2g0327561 | 39.161 | 143 | 57 | 2 | 266 | 408 | 445 | 557 | 2.70e-26 | 112 |
| Msa0844790 | MtrunA17_Chr2g0327561 | 43.564 | 101 | 56 | 1 | 29 | 129 | 442 | 541 | 1.91e-19 | 91.3 |
| Msa0844790 | MtrunA17_Chr2g0327561 | 38.211 | 123 | 46 | 1 | 271 | 393 | 167 | 259 | 5.38e-19 | 90.1 |
| Msa0844790 | MtrunA17_Chr2g0327561 | 34.862 | 109 | 70 | 1 | 29 | 137 | 159 | 266 | 2.01e-15 | 79.0 |
| Msa0844790 | MtrunA17_Chr8g0369091 | 37.956 | 137 | 55 | 1 | 266 | 402 | 416 | 522 | 1.38e-25 | 110 |
| Msa0844790 | MtrunA17_Chr8g0369091 | 40.171 | 117 | 62 | 2 | 29 | 138 | 413 | 528 | 7.25e-20 | 92.4 |
| Msa0844790 | MtrunA17_Chr8g0369091 | 35.772 | 123 | 49 | 1 | 271 | 393 | 137 | 229 | 1.07e-18 | 89.0 |
| Msa0844790 | MtrunA17_Chr8g0369091 | 35.897 | 117 | 72 | 2 | 13 | 129 | 115 | 228 | 5.41e-18 | 86.7 |
| Msa0844790 | MtrunA17_Chr4g0030361 | 39.062 | 128 | 48 | 1 | 266 | 393 | 126 | 223 | 4.67e-25 | 108 |
| Msa0844790 | MtrunA17_Chr4g0030361 | 43.564 | 101 | 56 | 1 | 29 | 129 | 123 | 222 | 1.72e-19 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844790 | AT2G02710.1 | 48.293 | 410 | 163 | 8 | 7 | 413 | 19 | 382 | 2.14e-118 | 351 |
| Msa0844790 | AT2G02710.2 | 48.049 | 410 | 162 | 8 | 7 | 413 | 19 | 380 | 1.92e-117 | 349 |
| Msa0844790 | AT2G02710.3 | 48.556 | 381 | 148 | 7 | 7 | 384 | 19 | 354 | 2.00e-108 | 324 |
| Msa0844790 | AT2G02710.4 | 50.000 | 308 | 134 | 6 | 7 | 311 | 19 | 309 | 4.90e-90 | 276 |
| Msa0844790 | AT2G02710.4 | 35.156 | 128 | 52 | 2 | 266 | 392 | 42 | 139 | 2.64e-15 | 77.0 |
| Msa0844790 | AT5G58140.4 | 28.700 | 446 | 218 | 14 | 29 | 425 | 135 | 529 | 4.18e-44 | 164 |
| Msa0844790 | AT5G58140.6 | 28.475 | 446 | 219 | 14 | 29 | 425 | 135 | 529 | 1.05e-43 | 164 |
| Msa0844790 | AT5G58140.7 | 28.475 | 446 | 219 | 14 | 29 | 425 | 135 | 529 | 1.05e-43 | 164 |
| Msa0844790 | AT5G58140.5 | 28.475 | 446 | 219 | 14 | 29 | 425 | 135 | 529 | 1.05e-43 | 164 |
| Msa0844790 | AT5G58140.2 | 28.475 | 446 | 219 | 14 | 29 | 425 | 135 | 529 | 1.05e-43 | 164 |
| Msa0844790 | AT5G58140.1 | 28.475 | 446 | 219 | 14 | 29 | 425 | 135 | 529 | 1.05e-43 | 164 |
| Msa0844790 | AT5G58140.3 | 28.475 | 446 | 219 | 14 | 29 | 425 | 135 | 529 | 1.30e-43 | 164 |
| Msa0844790 | AT3G45780.2 | 37.226 | 137 | 56 | 1 | 266 | 402 | 480 | 586 | 2.64e-24 | 106 |
| Msa0844790 | AT3G45780.2 | 41.463 | 123 | 42 | 1 | 271 | 393 | 207 | 299 | 8.25e-22 | 99.0 |
| Msa0844790 | AT3G45780.2 | 43.564 | 101 | 56 | 1 | 29 | 129 | 477 | 576 | 5.54e-19 | 90.5 |
| Msa0844790 | AT3G45780.2 | 29.452 | 146 | 91 | 3 | 29 | 167 | 199 | 339 | 1.06e-14 | 77.0 |
| Msa0844790 | AT3G45780.1 | 37.226 | 137 | 56 | 1 | 266 | 402 | 480 | 586 | 2.64e-24 | 106 |
| Msa0844790 | AT3G45780.1 | 41.463 | 123 | 42 | 1 | 271 | 393 | 207 | 299 | 8.25e-22 | 99.0 |
| Msa0844790 | AT3G45780.1 | 43.564 | 101 | 56 | 1 | 29 | 129 | 477 | 576 | 5.54e-19 | 90.5 |
| Msa0844790 | AT3G45780.1 | 29.452 | 146 | 91 | 3 | 29 | 167 | 199 | 339 | 1.06e-14 | 77.0 |
Find 126 sgRNAs with CRISPR-Local
Find 404 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATTGAATATGGGAAAAT+AGG | 0.110827 | 5_4:+23408060 | None:intergenic |
| TTCAAGTTCCGTTGAAATTA+AGG | 0.184229 | 5_4:-23407345 | Msa0844790:CDS |
| CTTCCCCACCTTTCTCCATT+TGG | 0.206460 | 5_4:-23408142 | Msa0844790:five_prime_UTR |
| CCGTTGAAATTAAGGGTTTA+TGG | 0.216772 | 5_4:-23407337 | Msa0844790:CDS |
| ATCAACAACATAATTATTAA+TGG | 0.233623 | 5_4:-23407743 | Msa0844790:exon |
| TTGGGGTGTGATGAGGAAAA+TGG | 0.237871 | 5_4:+23407973 | None:intergenic |
| GGAAGGATAAAAGCTCATTT+TGG | 0.238048 | 5_4:-23404790 | Msa0844790:CDS |
| CCTTTGGCACGTATAATATA+TGG | 0.242336 | 5_4:-23402345 | Msa0844790:three_prime_UTR |
| TTCCCCACCTTTCTCCATTT+GGG | 0.257845 | 5_4:-23408141 | Msa0844790:five_prime_UTR |
| GCGTGGCTAGCGAAGATTAT+TGG | 0.264187 | 5_4:+23407607 | None:intergenic |
| GATGAATATTGAATTGAATA+TGG | 0.267514 | 5_4:+23408051 | None:intergenic |
| TGTGCTTCTTCTGCTTCTAT+TGG | 0.287583 | 5_4:+23407772 | None:intergenic |
| CAGGAATCAAGTGTTGGATT+TGG | 0.287990 | 5_4:-23407206 | Msa0844790:CDS |
| AAAGCTTTGAATTTGTTTAC+TGG | 0.305343 | 5_4:-23404845 | Msa0844790:CDS |
| AGAAGTTTGTTCGGATAGTT+TGG | 0.314626 | 5_4:-23407254 | Msa0844790:CDS |
| ACACTAAGCTGTTTCATATC+AGG | 0.325862 | 5_4:+23402461 | None:intergenic |
| GAATTGAATATGGGAAAATA+GGG | 0.330078 | 5_4:+23408061 | None:intergenic |
| TTCGCGCGCGACGAAGTTCT+TGG | 0.330964 | 5_4:-23407565 | Msa0844790:CDS |
| CAAATCCAACACTTGATTCC+TGG | 0.331129 | 5_4:+23407207 | None:intergenic |
| TTCGTCGTGTTTCTTCTTCC+AGG | 0.345137 | 5_4:-23407225 | Msa0844790:CDS |
| TGGGGTGTGATGAGGAAAAT+GGG | 0.348275 | 5_4:+23407974 | None:intergenic |
| GAGAGAAGCGAACGTTGTTT+TGG | 0.349634 | 5_4:-23407464 | Msa0844790:CDS |
| TCAAGTTCCGTTGAAATTAA+GGG | 0.359299 | 5_4:-23407344 | Msa0844790:CDS |
| CAATTCACACAACATTTAAC+AGG | 0.361896 | 5_4:-23404811 | Msa0844790:CDS |
| AGGGTTTATGGTGGTGGTGG+TGG | 0.362667 | 5_4:-23407325 | Msa0844790:CDS |
| TTCTTCACATATCACCTGTT+CGG | 0.374962 | 5_4:-23404763 | Msa0844790:CDS |
| TTCCCGTCAACTGGCTATAG+TGG | 0.379544 | 5_4:+23405524 | None:intergenic |
| CGTGGCTAGCGAAGATTATT+GGG | 0.387551 | 5_4:+23407608 | None:intergenic |
| AAATTAAGGGTTTATGGTGG+TGG | 0.399077 | 5_4:-23407331 | Msa0844790:CDS |
| CGACGACTCTGCACTACAAC+TGG | 0.404927 | 5_4:-23405039 | Msa0844790:intron |
| TCTTCACATATCACCTGTTC+GGG | 0.406751 | 5_4:-23404762 | Msa0844790:CDS |
| ATAATAACAATAATAATATC+TGG | 0.414764 | 5_4:+23408006 | None:intergenic |
| TCACCTGTTCGGGATGCTAC+TGG | 0.419247 | 5_4:-23404752 | Msa0844790:CDS |
| ACACCAATCTTCCCGTCAAC+TGG | 0.421126 | 5_4:+23405515 | None:intergenic |
| TATACGAGAGACGAGGTATT+GGG | 0.426758 | 5_4:-23405095 | Msa0844790:CDS |
| TGGAAATTCGTGAAGCTGTA+AGG | 0.427129 | 5_4:-23407492 | Msa0844790:CDS |
| TGGTTCCATGTTTCAAGGTC+CGG | 0.435853 | 5_4:-23407536 | Msa0844790:CDS |
| TTATACGAGAGACGAGGTAT+TGG | 0.445398 | 5_4:-23405096 | Msa0844790:CDS |
| TCTTCCTTGATTATTTCTCT+TGG | 0.445792 | 5_4:-23405451 | Msa0844790:intron |
| AGGGATTGTGTGAACTAAGA+AGG | 0.446133 | 5_4:+23408080 | None:intergenic |
| CAATTTCATGAAGGCGTCAC+TGG | 0.449712 | 5_4:+23405263 | None:intergenic |
| GCATAAACAATAGGCATGTC+TGG | 0.456311 | 5_4:+23405285 | None:intergenic |
| GGGGTGTGATGAGGAAAATG+GGG | 0.466117 | 5_4:+23407975 | None:intergenic |
| TAGCCAGTTGACGGGAAGAT+TGG | 0.468953 | 5_4:-23405518 | Msa0844790:CDS |
| GCGTCACTGGCATAAACAAT+AGG | 0.471160 | 5_4:+23405276 | None:intergenic |
| ATTGGGTGGTTTGAAAGTGA+TGG | 0.474517 | 5_4:+23407625 | None:intergenic |
| TTGTCGGAAAGAAGTTTGTT+CGG | 0.475658 | 5_4:-23407263 | Msa0844790:CDS |
| GTTAAGGTAGCATACTTTGT+GGG | 0.479990 | 5_4:-23402536 | Msa0844790:intron |
| TGGTGGTGGTGGTTCTGTTG+TGG | 0.494177 | 5_4:-23407311 | Msa0844790:CDS |
| TGTTAAGGTAGCATACTTTG+TGG | 0.494641 | 5_4:-23402537 | Msa0844790:intron |
| TTCTTCCAGGAATCAAGTGT+TGG | 0.497846 | 5_4:-23407212 | Msa0844790:CDS |
| ATGAATATTGAATTGAATAT+GGG | 0.499372 | 5_4:+23408052 | None:intergenic |
| TTAAGGGTTTATGGTGGTGG+TGG | 0.503441 | 5_4:-23407328 | Msa0844790:CDS |
| TTCATCAAAGACATAGTCAT+AGG | 0.505578 | 5_4:-23402390 | Msa0844790:exon |
| TTTCCAGTAGCATCCCGAAC+AGG | 0.507450 | 5_4:+23404749 | None:intergenic |
| CTTTGATGAACCAGCAGACA+TGG | 0.513516 | 5_4:+23402403 | None:intergenic |
| AGGAGTTTATCCATGTCTGC+TGG | 0.514784 | 5_4:-23402413 | Msa0844790:CDS |
| GTCAAGTTGGCATGGTTGGA+AGG | 0.521901 | 5_4:+23407927 | None:intergenic |
| ATTTGTTTAGTTTAGACCAT+AGG | 0.525429 | 5_4:+23407892 | None:intergenic |
| TTGGGTGGTTTGAAAGTGAT+GGG | 0.526217 | 5_4:+23407626 | None:intergenic |
| AGTTATCGTTGAGATGATAG+AGG | 0.527796 | 5_4:-23402255 | Msa0844790:three_prime_UTR |
| GGGTGTGATGAGGAAAATGG+GGG | 0.528881 | 5_4:+23407976 | None:intergenic |
| CACGCGTTTCTCAACATCAC+TGG | 0.530728 | 5_4:-23407589 | Msa0844790:CDS |
| GAGCTAAGAAGACCCACGTC+AGG | 0.531685 | 5_4:+23405472 | None:intergenic |
| GACGCCTTCATGAAATTGAC+AGG | 0.532996 | 5_4:-23405258 | Msa0844790:intron |
| AGTACCTGTCAATTTCATGA+AGG | 0.534197 | 5_4:+23405254 | None:intergenic |
| TTGAAATAAGTGCTTAGTTG+TGG | 0.534246 | 5_4:+23407841 | None:intergenic |
| ACCCACTATAGCCAGTTGAC+GGG | 0.536576 | 5_4:-23405526 | Msa0844790:CDS |
| AGAAGTGGTTCCATGTTTCA+AGG | 0.536947 | 5_4:-23407541 | Msa0844790:CDS |
| AACCCACTATAGCCAGTTGA+CGG | 0.537779 | 5_4:-23405527 | Msa0844790:CDS |
| GGGATTGTGTGAACTAAGAA+GGG | 0.539891 | 5_4:+23408081 | None:intergenic |
| AAATGGAGAAAGGTGGGGAA+GGG | 0.544966 | 5_4:+23408144 | None:intergenic |
| CAAATGGAGAAAGGTGGGGA+AGG | 0.546588 | 5_4:+23408143 | None:intergenic |
| CCATAAACCCTTAATTTCAA+CGG | 0.549522 | 5_4:+23407337 | None:intergenic |
| AATAAGTGCTTAGTTGTGGA+TGG | 0.551966 | 5_4:+23407845 | None:intergenic |
| ATAATATCTGGTGAAAGTTG+TGG | 0.555040 | 5_4:+23408018 | None:intergenic |
| ACGAGGAATATAGACAGTGT+TGG | 0.556633 | 5_4:-23402487 | Msa0844790:CDS |
| TAGTGTGGTTGGTGCAGTCA+AGG | 0.556720 | 5_4:-23402444 | Msa0844790:CDS |
| ACTCCCAAATGGAGAAAGGT+GGG | 0.560309 | 5_4:+23408138 | None:intergenic |
| GTGGTTTGAAAGTGATGGGT+CGG | 0.560649 | 5_4:+23407630 | None:intergenic |
| CTAGACTCCCAAATGGAGAA+AGG | 0.567490 | 5_4:+23408134 | None:intergenic |
| GATGGGTCGGTGATTGTGAA+TGG | 0.567615 | 5_4:+23407643 | None:intergenic |
| ACAGTTAAGAAAACCCAAAA+CGG | 0.568098 | 5_4:+23407418 | None:intergenic |
| GTGTGATGAGGAAAATGGGG+GGG | 0.569413 | 5_4:+23407978 | None:intergenic |
| ATAGGCATGTCTGGCAAATG+TGG | 0.572472 | 5_4:+23405294 | None:intergenic |
| GGAAATTCGTGAAGCTGTAA+GGG | 0.574198 | 5_4:-23407491 | Msa0844790:CDS |
| TGTCGCCGGACCTTGAAACA+TGG | 0.576029 | 5_4:+23407531 | None:intergenic |
| TCTACCAAGAGAAATAATCA+AGG | 0.577573 | 5_4:+23405447 | None:intergenic |
| TCATCATCACTTGCCTCGCG+TGG | 0.577812 | 5_4:+23405595 | None:intergenic |
| CCATATATTATACGTGCCAA+AGG | 0.578527 | 5_4:+23402345 | None:intergenic |
| GACGAAGTTCTTGGTAGAAG+TGG | 0.578815 | 5_4:-23407556 | Msa0844790:CDS |
| TACAATTACAATTGACAATG+TGG | 0.579781 | 5_4:+23402202 | None:intergenic |
| ATGAAACAGCTTAGTGTGGT+TGG | 0.581811 | 5_4:-23402455 | Msa0844790:CDS |
| GACATGTCGTAGGTCGGTGA+TGG | 0.582559 | 5_4:-23407512 | Msa0844790:CDS |
| CACAGAAAAGATGTTGTCCA+TGG | 0.586739 | 5_4:+23405552 | None:intergenic |
| TCCCGTCAACTGGCTATAGT+GGG | 0.596340 | 5_4:+23405525 | None:intergenic |
| GAGATGCAGCAATCCTGACG+TGG | 0.597630 | 5_4:-23405485 | Msa0844790:CDS |
| TATGGGATTGGGGTGTGATG+AGG | 0.599416 | 5_4:+23407966 | None:intergenic |
| AAGGTCCGGCGACATGTCGT+AGG | 0.600291 | 5_4:-23407522 | Msa0844790:CDS |
| GACTCCCAAATGGAGAAAGG+TGG | 0.602330 | 5_4:+23408137 | None:intergenic |
| CATAGTCATAGGATTACTGA+TGG | 0.608261 | 5_4:-23402379 | Msa0844790:exon |
| CAGTTGTAGTGCAGAGTCGT+CGG | 0.610417 | 5_4:+23405040 | None:intergenic |
| ACCGACCTACGACATGTCGC+CGG | 0.611829 | 5_4:+23407517 | None:intergenic |
| AACTATAGAAAGATGAGATG+TGG | 0.614162 | 5_4:+23402091 | None:intergenic |
| TGTTCGGGATGCTACTGGAA+AGG | 0.614560 | 5_4:-23404747 | Msa0844790:intron |
| TGTGTGACTAGACTCCCAAA+TGG | 0.614912 | 5_4:+23408127 | None:intergenic |
| GAGAAGTGCTGTGACTGCCA+TGG | 0.616486 | 5_4:-23405569 | Msa0844790:CDS |
| GGCTAGCGAAGATTATTGGG+TGG | 0.616506 | 5_4:+23407611 | None:intergenic |
| TCACACAACATTTAACAGGA+AGG | 0.617824 | 5_4:-23404807 | Msa0844790:CDS |
| GATGATGTTGATGATGTCAC+TGG | 0.625045 | 5_4:-23407178 | Msa0844790:intron |
| AGTCATAGGATTACTGATGG+TGG | 0.626305 | 5_4:-23402376 | Msa0844790:three_prime_UTR |
| TCCGGCGACATGTCGTAGGT+CGG | 0.629598 | 5_4:-23407518 | Msa0844790:CDS |
| GTTATCGTTGAGATGATAGA+GGG | 0.632606 | 5_4:-23402254 | Msa0844790:three_prime_UTR |
| TTGAAATTAAGGGTTTATGG+TGG | 0.635580 | 5_4:-23407334 | Msa0844790:CDS |
| CTTCGAGTGATTCTCGCGCG+TGG | 0.639791 | 5_4:+23407683 | None:intergenic |
| GCGAGGCAAGTGATGATGAG+AGG | 0.642574 | 5_4:-23405591 | Msa0844790:CDS |
| CTCCCAAATGGAGAAAGGTG+GGG | 0.647997 | 5_4:+23408139 | None:intergenic |
| GGTGTGATGAGGAAAATGGG+GGG | 0.648363 | 5_4:+23407977 | None:intergenic |
| GGAGAGTGAAGAGCCACGCG+AGG | 0.676117 | 5_4:-23405608 | Msa0844790:CDS |
| AGATGCAGCAATCCTGACGT+GGG | 0.686224 | 5_4:-23405484 | Msa0844790:CDS |
| TAGTTTAGACCATAGGAACG+AGG | 0.691593 | 5_4:+23407899 | None:intergenic |
| CAGTGATGTTGAGAAACGCG+TGG | 0.707851 | 5_4:+23407590 | None:intergenic |
| AAATGTGGATTAGTTCTGCG+AGG | 0.718007 | 5_4:+23405309 | None:intergenic |
| TGATATGAAACAGCTTAGTG+TGG | 0.727007 | 5_4:-23402459 | Msa0844790:CDS |
| GTGCAGTCAAGGTTGCAGTG+AGG | 0.741307 | 5_4:-23402433 | Msa0844790:CDS |
| AATAGGTTATACGAGAGACG+AGG | 0.762817 | 5_4:-23405102 | Msa0844790:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAACAATAATAATATC+TGG | + | chr5_4:23402175-23402194 | None:intergenic | 10.0% |
| !! | TAAATATATATGAAAAAGAA+GGG | + | chr5_4:23406320-23406339 | None:intergenic | 10.0% |
| !! | ATAAATATATATGAAAAAGA+AGG | + | chr5_4:23406321-23406340 | None:intergenic | 10.0% |
| !! | ATGAATATTGAATTGAATAT+GGG | + | chr5_4:23402129-23402148 | None:intergenic | 15.0% |
| !! | ATCAACAACATAATTATTAA+TGG | - | chr5_4:23402435-23402454 | Msa0844790:CDS | 15.0% |
| !! | TTGGTTAATTATAGAAAAAA+CGG | - | chr5_4:23402733-23402752 | Msa0844790:intron | 15.0% |
| !!! | TTATATTTGATTTAGTGTTT+TGG | - | chr5_4:23403673-23403692 | Msa0844790:intron | 15.0% |
| !!! | AATGACAATTTATTTTTCTT+TGG | - | chr5_4:23403704-23403723 | Msa0844790:intron | 15.0% |
| !! | AGTTAATGATAATTGATAAA+AGG | - | chr5_4:23403962-23403981 | Msa0844790:intron | 15.0% |
| !! | AAAATATATAGATTGTTAAG+AGG | + | chr5_4:23404310-23404329 | None:intergenic | 15.0% |
| !! | CAAAAATATAAACAAATTCA+GGG | + | chr5_4:23404838-23404857 | None:intergenic | 15.0% |
| !! | ACAAAAATATAAACAAATTC+AGG | + | chr5_4:23404839-23404858 | None:intergenic | 15.0% |
| !!! | GTAATACACTTTTTTTTTTT+GGG | - | chr5_4:23405161-23405180 | Msa0844790:intron | 15.0% |
| !!! | TAATACACTTTTTTTTTTTG+GGG | - | chr5_4:23405162-23405181 | Msa0844790:intron | 15.0% |
| !!! | AAACATTTTCTCAAATTAAT+AGG | - | chr5_4:23406068-23406087 | Msa0844790:intron | 15.0% |
| !!! | AACATTTTCTCAAATTAATA+GGG | - | chr5_4:23406069-23406088 | Msa0844790:intron | 15.0% |
| !! | AAATATATATGAAAAAGAAG+GGG | + | chr5_4:23406319-23406338 | None:intergenic | 15.0% |
| !!! | TTCACTTTTTTTTTTTCAAA+TGG | + | chr5_4:23406351-23406370 | None:intergenic | 15.0% |
| !! | GATGAATATTGAATTGAATA+TGG | + | chr5_4:23402130-23402149 | None:intergenic | 20.0% |
| !!! | TGAATCATGATTTTATGTTT+CGG | - | chr5_4:23402890-23402909 | Msa0844790:intron | 20.0% |
| !!! | TTTATGCATTGATTAGTATT+CGG | - | chr5_4:23403078-23403097 | Msa0844790:intron | 20.0% |
| !!! | TAGCTTTTAATAAAATTACG+TGG | - | chr5_4:23403165-23403184 | Msa0844790:intron | 20.0% |
| !! | AGTAGAAAATAATAGACTAT+TGG | - | chr5_4:23404334-23404353 | Msa0844790:intron | 20.0% |
| !! | TTTAACTATGAATCAATAGA+TGG | - | chr5_4:23404406-23404425 | Msa0844790:intron | 20.0% |
| !!! | TTTCATTATGTTAGTTTCTA+TGG | - | chr5_4:23404447-23404466 | Msa0844790:intron | 20.0% |
| !! | TACATAATATCATACAGATT+TGG | - | chr5_4:23404549-23404568 | Msa0844790:intron | 20.0% |
| !!! | GGTAATACACTTTTTTTTTT+TGG | - | chr5_4:23405160-23405179 | Msa0844790:intron | 20.0% |
| !! | AAATAAATCATAGACATTTG+AGG | + | chr5_4:23405493-23405512 | None:intergenic | 20.0% |
| !! | TTGATATATTTCATTGTTTC+CGG | - | chr5_4:23405824-23405843 | Msa0844790:intron | 20.0% |
| !! | TTATACAAAACCATGAAAAT+AGG | - | chr5_4:23405998-23406017 | Msa0844790:intron | 20.0% |
| !!! | TCTAATATTTTCATTGTTTC+AGG | + | chr5_4:23406133-23406152 | None:intergenic | 20.0% |
| !! | AATATATATGAAAAAGAAGG+GGG | + | chr5_4:23406318-23406337 | None:intergenic | 20.0% |
| !!! | ATTTTTAAATTGCAGGATTT+TGG | - | chr5_4:23406510-23406529 | Msa0844790:intron | 20.0% |
| !!! | TTTTAGTTCCATAAGTTATA+TGG | - | chr5_4:23406596-23406615 | Msa0844790:intron | 20.0% |
| !! | AGAAAATAGAAATGATAGTT+TGG | + | chr5_4:23406858-23406877 | None:intergenic | 20.0% |
| !!! | AACTATCATTTCTATTTTCT+AGG | - | chr5_4:23406858-23406877 | Msa0844790:intron | 20.0% |
| !!! | GATAGTTATAATGAGATTTT+GGG | + | chr5_4:23406950-23406969 | None:intergenic | 20.0% |
| !!! | TGATAGTTATAATGAGATTT+TGG | + | chr5_4:23406951-23406970 | None:intergenic | 20.0% |
| !! | TCATTATAACTATCATTTCT+AGG | - | chr5_4:23406956-23406975 | Msa0844790:intron | 20.0% |
| !!! | ATACACCTTTTAAAATTACA+CGG | + | chr5_4:23407110-23407129 | None:intergenic | 20.0% |
| !! | ATCATCCAAAATAACTAATA+AGG | + | chr5_4:23407259-23407278 | None:intergenic | 20.0% |
| !!! | TCCATATTTTATGGAAATTT+CGG | - | chr5_4:23407574-23407593 | Msa0844790:CDS | 20.0% |
| ! | GAATTGAATATGGGAAAATA+GGG | + | chr5_4:23402120-23402139 | None:intergenic | 25.0% |
| ! | TGAATTGAATATGGGAAAAT+AGG | + | chr5_4:23402121-23402140 | None:intergenic | 25.0% |
| !!! | GTGTTTTTTCTTTTGAGTAT+GGG | + | chr5_4:23402232-23402251 | None:intergenic | 25.0% |
| !! | ATTTGTTTAGTTTAGACCAT+AGG | + | chr5_4:23402289-23402308 | None:intergenic | 25.0% |
| ! | TTTGTATTAGCACAAAATCA+CGG | + | chr5_4:23403414-23403433 | None:intergenic | 25.0% |
| !!! | TCGAAGTTTTAACTAAATCA+CGG | - | chr5_4:23403509-23403528 | Msa0844790:intron | 25.0% |
| !! | TTAAAGCACTAATTCATGTT+TGG | + | chr5_4:23403575-23403594 | None:intergenic | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | + | chr5_4:23404029-23404048 | None:intergenic | 25.0% |
| !! | ACTAAATTTGAATACTGACT+TGG | - | chr5_4:23404225-23404244 | Msa0844790:intron | 25.0% |
| !!! | ACAATGTGATTTGATTTGAT+TGG | - | chr5_4:23404260-23404279 | Msa0844790:intron | 25.0% |
| ! | ACAGATAATCAATTAATCCA+TGG | + | chr5_4:23404287-23404306 | None:intergenic | 25.0% |
| ! | GAAAATAATAGACTATTGGT+TGG | - | chr5_4:23404338-23404357 | Msa0844790:intron | 25.0% |
| ! | AAAATCTTTACACGTCTTAT+TGG | + | chr5_4:23404388-23404407 | None:intergenic | 25.0% |
| ! | TCTTGGTAAATATGAGTTAT+TGG | + | chr5_4:23405021-23405040 | None:intergenic | 25.0% |
| !! | AAAACACAATCTGAAATTCT+TGG | + | chr5_4:23405038-23405057 | None:intergenic | 25.0% |
| ! | CTTATTGCTTATACAGATAA+GGG | - | chr5_4:23405227-23405246 | Msa0844790:intron | 25.0% |
| !!! | AAAGCTTTGAATTTGTTTAC+TGG | - | chr5_4:23405333-23405352 | Msa0844790:CDS | 25.0% |
| !!! | TCTATGATTTATTTTCTGTC+AGG | - | chr5_4:23405499-23405518 | Msa0844790:CDS | 25.0% |
| !!! | AAATAGTTTTTTGTTGGTCT+GGG | - | chr5_4:23405595-23405614 | Msa0844790:CDS | 25.0% |
| !! | CTAACGCAAATTTTATGAAA+TGG | + | chr5_4:23405691-23405710 | None:intergenic | 25.0% |
| !!! | GTTAGTTTTACTTGTTAACA+AGG | - | chr5_4:23405706-23405725 | Msa0844790:intron | 25.0% |
| !! | CATTTTCTTTCCTATTTTCA+TGG | + | chr5_4:23406011-23406030 | None:intergenic | 25.0% |
| ! | CATGAAAATAGGAAAGAAAA+TGG | - | chr5_4:23406009-23406028 | Msa0844790:intron | 25.0% |
| ! | TTCAGGAACTATAAAGATAA+TGG | + | chr5_4:23406116-23406135 | None:intergenic | 25.0% |
| !!! | TAAGAGTGTTTTATGCTTTT+TGG | - | chr5_4:23406204-23406223 | Msa0844790:intron | 25.0% |
| !!! | TATGCTTTTTGGTTTAGTTT+TGG | - | chr5_4:23406215-23406234 | Msa0844790:intron | 25.0% |
| ! | ATATATATGAAAAAGAAGGG+GGG | + | chr5_4:23406317-23406336 | None:intergenic | 25.0% |
| ! | ATCCTGCAATTTAAAAATGA+GGG | + | chr5_4:23406508-23406527 | None:intergenic | 25.0% |
| ! | AATCCTGCAATTTAAAAATG+AGG | + | chr5_4:23406509-23406528 | None:intergenic | 25.0% |
| ! | ATAACTTATGGAACTAAAAG+TGG | + | chr5_4:23406595-23406614 | None:intergenic | 25.0% |
| ! | TTACATGATCACAATACATA+TGG | - | chr5_4:23406694-23406713 | Msa0844790:intron | 25.0% |
| ! | TACATGATCACAATACATAT+GGG | - | chr5_4:23406695-23406714 | Msa0844790:intron | 25.0% |
| ! | TGTACAAGGGAAAAATATTA+AGG | - | chr5_4:23406754-23406773 | Msa0844790:intron | 25.0% |
| !!! | TCATATTTGCTTGTTTTTAC+TGG | - | chr5_4:23406910-23406929 | Msa0844790:intron | 25.0% |
| ! | TGTCAATCTTGAATACAATT+GGG | + | chr5_4:23407060-23407079 | None:intergenic | 25.0% |
| !! | TCCATCCTTATTAGTTATTT+TGG | - | chr5_4:23407251-23407270 | Msa0844790:CDS | 25.0% |
| ! | TCCAAAATAACTAATAAGGA+TGG | + | chr5_4:23407255-23407274 | None:intergenic | 25.0% |
| ! | TTAGGATAACAAAATATCGA+AGG | + | chr5_4:23407324-23407343 | None:intergenic | 25.0% |
| ! | GAAATTTCCATAAAATATGG+AGG | + | chr5_4:23407575-23407594 | None:intergenic | 25.0% |
| ! | ACCGAAATTTCCATAAAATA+TGG | + | chr5_4:23407578-23407597 | None:intergenic | 25.0% |
| !!! | TCTATATTCCTCGTTTTTAT+AGG | + | chr5_4:23407685-23407704 | None:intergenic | 25.0% |
| ! | TACAATTACAATTGACAATG+TGG | + | chr5_4:23407979-23407998 | None:intergenic | 25.0% |
| ! | AAAAACTAAACATTCTCTGT+TGG | - | chr5_4:23408006-23408025 | Msa0844790:five_prime_UTR | 25.0% |
| !!! | AACCTTAACTTTGTTTTTAC+AGG | - | chr5_4:23408123-23408142 | Msa0844790:five_prime_UTR | 25.0% |
| ! | ATCCTGTAAAAACAAAGTTA+AGG | + | chr5_4:23408128-23408147 | None:intergenic | 25.0% |
| ATAATATCTGGTGAAAGTTG+TGG | + | chr5_4:23402163-23402182 | None:intergenic | 30.0% | |
| !! | TTTCTTTTGAGTATGGGATT+GGG | + | chr5_4:23402226-23402245 | None:intergenic | 30.0% |
| !! | TTTTCTTTTGAGTATGGGAT+TGG | + | chr5_4:23402227-23402246 | None:intergenic | 30.0% |
| !!! | GGTGTTTTTTCTTTTGAGTA+TGG | + | chr5_4:23402233-23402252 | None:intergenic | 30.0% |
| TTGAAATAAGTGCTTAGTTG+TGG | + | chr5_4:23402340-23402359 | None:intergenic | 30.0% | |
| ACAGTTAAGAAAACCCAAAA+CGG | + | chr5_4:23402763-23402782 | None:intergenic | 30.0% | |
| !! | CCACTTTTAACACAAAAAAC+CGG | + | chr5_4:23402790-23402809 | None:intergenic | 30.0% |
| ! | TTCAAGTTCCGTTGAAATTA+AGG | - | chr5_4:23402833-23402852 | Msa0844790:intron | 30.0% |
| TCAAGTTCCGTTGAAATTAA+GGG | - | chr5_4:23402834-23402853 | Msa0844790:intron | 30.0% | |
| CCATAAACCCTTAATTTCAA+CGG | + | chr5_4:23402844-23402863 | None:intergenic | 30.0% | |
| TTGAAATTAAGGGTTTATGG+TGG | - | chr5_4:23402844-23402863 | Msa0844790:intron | 30.0% | |
| !!! | ATTTTATGTTTCGGTGTTGT+CGG | - | chr5_4:23402899-23402918 | Msa0844790:intron | 30.0% |
| CAATGCACTAAGTAAATGTT+TGG | + | chr5_4:23403223-23403242 | None:intergenic | 30.0% | |
| ACTAATTCATGTTTGGACTT+TGG | + | chr5_4:23403568-23403587 | None:intergenic | 30.0% | |
| TATTACGCTTTCTGTCTATA+AGG | - | chr5_4:23403795-23403814 | Msa0844790:intron | 30.0% | |
| AAGGATGTGAAGACAAAATA+TGG | - | chr5_4:23403981-23404000 | Msa0844790:intron | 30.0% | |
| GAAGACAAAATATGGTTTAG+AGG | - | chr5_4:23403989-23404008 | Msa0844790:intron | 30.0% | |
| ! | TGGTTTTTGATAGAACACTA+TGG | - | chr5_4:23404033-23404052 | Msa0844790:intron | 30.0% |
| TGTAAAGAAGTTCACACATT+TGG | - | chr5_4:23404147-23404166 | Msa0844790:intron | 30.0% | |
| GTAAAGAAGTTCACACATTT+GGG | - | chr5_4:23404148-23404167 | Msa0844790:intron | 30.0% | |
| TTCAAATTTAGTCCCTCAAA+GGG | + | chr5_4:23404217-23404236 | None:intergenic | 30.0% | |
| ATTCAAATTTAGTCCCTCAA+AGG | + | chr5_4:23404218-23404237 | None:intergenic | 30.0% | |
| ! | TCTTCCTTGATTATTTCTCT+TGG | - | chr5_4:23404727-23404746 | Msa0844790:intron | 30.0% |
| TCTACCAAGAGAAATAATCA+AGG | + | chr5_4:23404734-23404753 | None:intergenic | 30.0% | |
| !! | ATTTGATGGTGTTTGACATA+AGG | - | chr5_4:23404987-23405006 | Msa0844790:intron | 30.0% |
| AATTACCATGTTGTCTGAAT+AGG | - | chr5_4:23405059-23405078 | Msa0844790:CDS | 30.0% | |
| TATAACCTATTCAGACAACA+TGG | + | chr5_4:23405067-23405086 | None:intergenic | 30.0% | |
| GGAACTTAGATCAATGTAAA+TGG | - | chr5_4:23405183-23405202 | Msa0844790:intron | 30.0% | |
| !! | ATCAATGTAAATGGACTATG+TGG | - | chr5_4:23405192-23405211 | Msa0844790:intron | 30.0% |
| CCTTATCTGTATAAGCAATA+AGG | + | chr5_4:23405229-23405248 | None:intergenic | 30.0% | |
| CCTTATTGCTTATACAGATA+AGG | - | chr5_4:23405226-23405245 | Msa0844790:intron | 30.0% | |
| !! | CAGTACGTATTTTGAATTAC+AGG | - | chr5_4:23405277-23405296 | Msa0844790:CDS | 30.0% |
| !! | TCCATTCATTTTTATCTCTG+CGG | - | chr5_4:23405308-23405327 | Msa0844790:CDS | 30.0% |
| CAATTCACACAACATTTAAC+AGG | - | chr5_4:23405367-23405386 | Msa0844790:intron | 30.0% | |
| TAGTTCAACTAAGAAATAGC+TGG | + | chr5_4:23405466-23405485 | None:intergenic | 30.0% | |
| !! | ATTTATTTTCTGTCAGGCAT+CGG | - | chr5_4:23405505-23405524 | Msa0844790:CDS | 30.0% |
| !! | AGTTGAAGTATCTGCTTTTA+TGG | - | chr5_4:23405539-23405558 | Msa0844790:CDS | 30.0% |
| CAAAAAACTATTTGTGCTCA+AGG | + | chr5_4:23405588-23405607 | None:intergenic | 30.0% | |
| !!! | GAGCACAAATAGTTTTTTGT+TGG | - | chr5_4:23405589-23405608 | Msa0844790:CDS | 30.0% |
| !!! | CAAATAGTTTTTTGTTGGTC+TGG | - | chr5_4:23405594-23405613 | Msa0844790:CDS | 30.0% |
| !! | TTGGCTTTGTAGTTTCTTAA+AGG | - | chr5_4:23406234-23406253 | Msa0844790:intron | 30.0% |
| !!! | GTTTCTTAAAGGCTTTTTTC+TGG | - | chr5_4:23406245-23406264 | Msa0844790:intron | 30.0% |
| !! | TCTGCTTTTCATTTGTATTG+TGG | - | chr5_4:23406282-23406301 | Msa0844790:intron | 30.0% |
| AAACAGAAAGAGTTAGTAGT+TGG | - | chr5_4:23406419-23406438 | Msa0844790:intron | 30.0% | |
| AACAGAAAGAGTTAGTAGTT+GGG | - | chr5_4:23406420-23406439 | Msa0844790:intron | 30.0% | |
| ATAGCACAATCATGATACTT+GGG | + | chr5_4:23406479-23406498 | None:intergenic | 30.0% | |
| AATAGCACAATCATGATACT+TGG | + | chr5_4:23406480-23406499 | None:intergenic | 30.0% | |
| !!! | GTATCATGATTGTGCTATTT+TGG | - | chr5_4:23406481-23406500 | Msa0844790:intron | 30.0% |
| TAGCATGACCATATAACTTA+TGG | + | chr5_4:23406607-23406626 | None:intergenic | 30.0% | |
| ! | GTTATATGGTCATGCTATTT+CGG | - | chr5_4:23406610-23406629 | Msa0844790:intron | 30.0% |
| ATACATATGGGACTAAAAGT+TGG | - | chr5_4:23406707-23406726 | Msa0844790:intron | 30.0% | |
| AAAAGTTGGAGAAAATCAAC+AGG | - | chr5_4:23406721-23406740 | Msa0844790:intron | 30.0% | |
| !!! | AGGACTTCTTTTTTGTACAA+GGG | - | chr5_4:23406741-23406760 | Msa0844790:intron | 30.0% |
| AAAATCAAGCAATTGAGAAG+TGG | - | chr5_4:23406780-23406799 | Msa0844790:intron | 30.0% | |
| ! | TCATTTCTATTTTCTAGGCT+TGG | - | chr5_4:23406863-23406882 | Msa0844790:intron | 30.0% |
| ! | ATAACTATCATTTCTAGGCT+TGG | - | chr5_4:23406961-23406980 | Msa0844790:intron | 30.0% |
| GTCAATCTTGAATACAATTG+GGG | + | chr5_4:23407059-23407078 | None:intergenic | 30.0% | |
| CTGTCAATCTTGAATACAAT+TGG | + | chr5_4:23407061-23407080 | None:intergenic | 30.0% | |
| ! | GATCACCGTGTAATTTTAAA+AGG | - | chr5_4:23407102-23407121 | Msa0844790:intron | 30.0% |
| !! | AGAATAGAGTTGATGTAATC+TGG | - | chr5_4:23407166-23407185 | Msa0844790:intron | 30.0% |
| GAATTAAAACTACAAAGCCA+GGG | + | chr5_4:23407376-23407395 | None:intergenic | 30.0% | |
| AGAATTAAAACTACAAAGCC+AGG | + | chr5_4:23407377-23407396 | None:intergenic | 30.0% | |
| CTCAACTGTTACAAGTTAAT+CGG | - | chr5_4:23407395-23407414 | Msa0844790:CDS | 30.0% | |
| GCATGAAACATAACCATATA+TGG | + | chr5_4:23407433-23407452 | None:intergenic | 30.0% | |
| !! | GTGCTGTTTAAATTTGTTCA+CGG | - | chr5_4:23407471-23407490 | Msa0844790:CDS | 30.0% |
| ! | GGATCCATTTTATGCATTTT+GGG | - | chr5_4:23407492-23407511 | Msa0844790:CDS | 30.0% |
| !! | AAGCTTTAAGTGCCATATAT+GGG | - | chr5_4:23407520-23407539 | Msa0844790:CDS | 30.0% |
| ! | TCGCTAAATTCTGTTTGTTA+AGG | - | chr5_4:23407626-23407645 | Msa0844790:CDS | 30.0% |
| TTCATCAAAGACATAGTCAT+AGG | - | chr5_4:23407788-23407807 | Msa0844790:five_prime_UTR | 30.0% | |
| !! | AGATTGATGATTTTTCTCGA+TGG | + | chr5_4:23407898-23407917 | None:intergenic | 30.0% |
| AACTATAGAAAGATGAGATG+TGG | + | chr5_4:23408090-23408109 | None:intergenic | 30.0% | |
| !! | TTCTTTTGAGTATGGGATTG+GGG | + | chr5_4:23402225-23402244 | None:intergenic | 35.0% |
| AATAAGTGCTTAGTTGTGGA+TGG | + | chr5_4:23402336-23402355 | None:intergenic | 35.0% | |
| TAGAGTCCAAAAAGTTCACA+TGG | - | chr5_4:23402371-23402390 | Msa0844790:three_prime_UTR | 35.0% | |
| AGAGTCCAAAAAGTTCACAT+GGG | - | chr5_4:23402372-23402391 | Msa0844790:three_prime_UTR | 35.0% | |
| ! | GGTTTTCTTAACTGTTTGTC+CGG | - | chr5_4:23402768-23402787 | Msa0844790:intron | 35.0% |
| !!! | CCGGTTTTTTGTGTTAAAAG+TGG | - | chr5_4:23402787-23402806 | Msa0844790:intron | 35.0% |
| CCGTTGAAATTAAGGGTTTA+TGG | - | chr5_4:23402841-23402860 | Msa0844790:intron | 35.0% | |
| AAATTAAGGGTTTATGGTGG+TGG | - | chr5_4:23402847-23402866 | Msa0844790:intron | 35.0% | |
| ! | TTGTCGGAAAGAAGTTTGTT+CGG | - | chr5_4:23402915-23402934 | Msa0844790:intron | 35.0% |
| ! | AGAAGTTTGTTCGGATAGTT+TGG | - | chr5_4:23402924-23402943 | Msa0844790:intron | 35.0% |
| GATTAGTATTCGGACATGTT+TGG | - | chr5_4:23403088-23403107 | Msa0844790:intron | 35.0% | |
| ! | GCTGTGGAATTTTGCAATTT+CGG | - | chr5_4:23403255-23403274 | Msa0844790:intron | 35.0% |
| TGCTAATACAAACATGCACT+TGG | - | chr5_4:23403422-23403441 | Msa0844790:intron | 35.0% | |
| TTCATGTTTGGACTTTGGAT+TGG | + | chr5_4:23403563-23403582 | None:intergenic | 35.0% | |
| CTTGGAAAGCTACACTTATT+AGG | - | chr5_4:23403630-23403649 | Msa0844790:intron | 35.0% | |
| GCTGATCTATTCAGAAAGTA+AGG | + | chr5_4:23403743-23403762 | None:intergenic | 35.0% | |
| ATCCATGTAAGCAACTTATG+TGG | - | chr5_4:23403870-23403889 | Msa0844790:intron | 35.0% | |
| CAACTTATGTGGCATTAATG+AGG | - | chr5_4:23403881-23403900 | Msa0844790:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | - | chr5_4:23404013-23404032 | Msa0844790:intron | 35.0% |
| TCAAATTTAGTCCCTCAAAG+GGG | + | chr5_4:23404216-23404235 | None:intergenic | 35.0% | |
| !! | GATTTGATTTGATTGGTCCA+TGG | - | chr5_4:23404267-23404286 | Msa0844790:intron | 35.0% |
| ! | TTAGTTTCTATGGTCCCTTT+TGG | - | chr5_4:23404457-23404476 | Msa0844790:intron | 35.0% |
| ATGGACAAATGCACAATCAT+TGG | + | chr5_4:23404491-23404510 | None:intergenic | 35.0% | |
| CCAAATAGAACCAAATCACA+TGG | + | chr5_4:23404510-23404529 | None:intergenic | 35.0% | |
| !! | CCATGTGATTTGGTTCTATT+TGG | - | chr5_4:23404507-23404526 | Msa0844790:intron | 35.0% |
| AGTACCTGTCAATTTCATGA+AGG | + | chr5_4:23404927-23404946 | None:intergenic | 35.0% | |
| TAGTAGCCATGCAAATTTGA+TGG | - | chr5_4:23404973-23404992 | Msa0844790:intron | 35.0% | |
| CAAACACCATCAAATTTGCA+TGG | + | chr5_4:23404982-23405001 | None:intergenic | 35.0% | |
| CACCTAAAAATCTACAGTTG+CGG | + | chr5_4:23405109-23405128 | None:intergenic | 35.0% | |
| ACCGCAGAGATAAAAATGAA+TGG | + | chr5_4:23405312-23405331 | None:intergenic | 35.0% | |
| TCACACAACATTTAACAGGA+AGG | - | chr5_4:23405371-23405390 | Msa0844790:intron | 35.0% | |
| ! | GGAAGGATAAAAGCTCATTT+TGG | - | chr5_4:23405388-23405407 | Msa0844790:intron | 35.0% |
| TTCTTCACATATCACCTGTT+CGG | - | chr5_4:23405415-23405434 | Msa0844790:intron | 35.0% | |
| TGATTTACCGATACAAGAGT+TGG | - | chr5_4:23405622-23405641 | Msa0844790:intron | 35.0% | |
| GATTTACCGATACAAGAGTT+GGG | - | chr5_4:23405623-23405642 | Msa0844790:intron | 35.0% | |
| ! | TTTAAAGCGAGTCATTGTGA+TGG | - | chr5_4:23405741-23405760 | Msa0844790:intron | 35.0% |
| AAAAGCTAAAATCCTAGCCA+GGG | - | chr5_4:23405766-23405785 | Msa0844790:intron | 35.0% | |
| TTTCCGGAAATGTAAGACAA+TGG | - | chr5_4:23405840-23405859 | Msa0844790:intron | 35.0% | |
| GAACCATTGTCTTACATTTC+CGG | + | chr5_4:23405846-23405865 | None:intergenic | 35.0% | |
| TTTATATCCTGATGAGACTC+TGG | - | chr5_4:23406165-23406184 | Msa0844790:intron | 35.0% | |
| AAACACTCTTAGTGAGAACA+AGG | + | chr5_4:23406195-23406214 | None:intergenic | 35.0% | |
| ACAAATGAAAAGCAGAGTAC+AGG | + | chr5_4:23406278-23406297 | None:intergenic | 35.0% | |
| ACAGAAAGAGTTAGTAGTTG+GGG | - | chr5_4:23406421-23406440 | Msa0844790:intron | 35.0% | |
| AAAGCAAGGTAAAGCCTAAT+AGG | + | chr5_4:23406449-23406468 | None:intergenic | 35.0% | |
| TAGCACAATCATGATACTTG+GGG | + | chr5_4:23406478-23406497 | None:intergenic | 35.0% | |
| !! | GTCCCTCATTTTTAAATTGC+AGG | - | chr5_4:23406503-23406522 | Msa0844790:intron | 35.0% |
| GGAATTTGAGGGAAAATCAA+GGG | + | chr5_4:23406570-23406589 | None:intergenic | 35.0% | |
| TAAAAGTGGAGGGAATTTGA+GGG | + | chr5_4:23406581-23406600 | None:intergenic | 35.0% | |
| CTTATGGAACTAAAAGTGGA+GGG | + | chr5_4:23406591-23406610 | None:intergenic | 35.0% | |
| ACTTATGGAACTAAAAGTGG+AGG | + | chr5_4:23406592-23406611 | None:intergenic | 35.0% | |
| !!! | CAGGACTTCTTTTTTGTACA+AGG | - | chr5_4:23406740-23406759 | Msa0844790:intron | 35.0% |
| GAAGGCTTAAGTGTAAGTTT+AGG | + | chr5_4:23407306-23407325 | None:intergenic | 35.0% | |
| ! | GCTGAATTAGCTTCCATATA+TGG | - | chr5_4:23407417-23407436 | Msa0844790:CDS | 35.0% |
| ! | GTTTCATGCTTTTGTCTGTA+TGG | - | chr5_4:23407444-23407463 | Msa0844790:CDS | 35.0% |
| ! | CGGATCCATTTTATGCATTT+TGG | - | chr5_4:23407491-23407510 | Msa0844790:CDS | 35.0% |
| GCTTCCCAAAATGCATAAAA+TGG | + | chr5_4:23407499-23407518 | None:intergenic | 35.0% | |
| !! | GAAGCTTTAAGTGCCATATA+TGG | - | chr5_4:23407519-23407538 | Msa0844790:CDS | 35.0% |
| ! | TGACAGTCCTCCATATTTTA+TGG | - | chr5_4:23407565-23407584 | Msa0844790:CDS | 35.0% |
| TGTTAAGGTAGCATACTTTG+TGG | - | chr5_4:23407641-23407660 | Msa0844790:CDS | 35.0% | |
| GTTAAGGTAGCATACTTTGT+GGG | - | chr5_4:23407642-23407661 | Msa0844790:CDS | 35.0% | |
| ! | ACACTAAGCTGTTTCATATC+AGG | + | chr5_4:23407720-23407739 | None:intergenic | 35.0% |
| TGATATGAAACAGCTTAGTG+TGG | - | chr5_4:23407719-23407738 | Msa0844790:CDS | 35.0% | |
| CATAGTCATAGGATTACTGA+TGG | - | chr5_4:23407799-23407818 | Msa0844790:five_prime_UTR | 35.0% | |
| CCATATATTATACGTGCCAA+AGG | + | chr5_4:23407836-23407855 | None:intergenic | 35.0% | |
| CCTTTGGCACGTATAATATA+TGG | - | chr5_4:23407833-23407852 | Msa0844790:five_prime_UTR | 35.0% | |
| AGTTATCGTTGAGATGATAG+AGG | - | chr5_4:23407923-23407942 | Msa0844790:five_prime_UTR | 35.0% | |
| GTTATCGTTGAGATGATAGA+GGG | - | chr5_4:23407924-23407943 | Msa0844790:five_prime_UTR | 35.0% | |
| GGGATTGTGTGAACTAAGAA+GGG | + | chr5_4:23402100-23402119 | None:intergenic | 40.0% | |
| AGGGATTGTGTGAACTAAGA+AGG | + | chr5_4:23402101-23402120 | None:intergenic | 40.0% | |
| !!! | TTTTGTCAAGTTGGCATGGT+TGG | + | chr5_4:23402258-23402277 | None:intergenic | 40.0% |
| !!! | AGGTTTTTGTCAAGTTGGCA+TGG | + | chr5_4:23402262-23402281 | None:intergenic | 40.0% |
| ! | GAACGAGGTTTTTGTCAAGT+TGG | + | chr5_4:23402267-23402286 | None:intergenic | 40.0% |
| TGACAAAAACCTCGTTCCTA+TGG | - | chr5_4:23402270-23402289 | Msa0844790:three_prime_UTR | 40.0% | |
| TAGTTTAGACCATAGGAACG+AGG | + | chr5_4:23402282-23402301 | None:intergenic | 40.0% | |
| ! | GCAATCCCATGTGAACTTTT+TGG | + | chr5_4:23402380-23402399 | None:intergenic | 40.0% |
| TGTGCTTCTTCTGCTTCTAT+TGG | + | chr5_4:23402409-23402428 | None:intergenic | 40.0% | |
| TTGGGTGGTTTGAAAGTGAT+GGG | + | chr5_4:23402555-23402574 | None:intergenic | 40.0% | |
| ATTGGGTGGTTTGAAAGTGA+TGG | + | chr5_4:23402556-23402575 | None:intergenic | 40.0% | |
| AGAAGTGGTTCCATGTTTCA+AGG | - | chr5_4:23402637-23402656 | Msa0844790:intron | 40.0% | |
| TGGAAATTCGTGAAGCTGTA+AGG | - | chr5_4:23402686-23402705 | Msa0844790:intron | 40.0% | |
| GGAAATTCGTGAAGCTGTAA+GGG | - | chr5_4:23402687-23402706 | Msa0844790:intron | 40.0% | |
| TTCTTCCAGGAATCAAGTGT+TGG | - | chr5_4:23402966-23402985 | Msa0844790:intron | 40.0% | |
| CAAATCCAACACTTGATTCC+TGG | + | chr5_4:23402974-23402993 | None:intergenic | 40.0% | |
| !! | CAGGAATCAAGTGTTGGATT+TGG | - | chr5_4:23402972-23402991 | Msa0844790:intron | 40.0% |
| !! | GATGATGTTGATGATGTCAC+TGG | - | chr5_4:23403000-23403019 | Msa0844790:intron | 40.0% |
| !! | ATGTTGATGATGTCACTGGT+TGG | - | chr5_4:23403004-23403023 | Msa0844790:intron | 40.0% |
| !! | ATTGATGACGAGTAATGCTG+TGG | - | chr5_4:23403239-23403258 | Msa0844790:intron | 40.0% |
| TGTCGTTGTTATGTGCACTA+TGG | - | chr5_4:23403340-23403359 | Msa0844790:intron | 40.0% | |
| AAATCGCAATGAATTCACCG+TGG | + | chr5_4:23403473-23403492 | None:intergenic | 40.0% | |
| ! | CGGTGAATTCATTGCGATTT+TGG | - | chr5_4:23403473-23403492 | Msa0844790:intron | 40.0% |
| GTAGCTTTCCAAGTGTAGTT+GGG | + | chr5_4:23403623-23403642 | None:intergenic | 40.0% | |
| TGTAGCTTTCCAAGTGTAGT+TGG | + | chr5_4:23403624-23403643 | None:intergenic | 40.0% | |
| TGCCACATAAGTTGCTTACA+TGG | + | chr5_4:23403875-23403894 | None:intergenic | 40.0% | |
| TGTGCAGCAGAATAGCATAA+AGG | + | chr5_4:23403926-23403945 | None:intergenic | 40.0% | |
| TGGTTTAGAGGTCAATGAGT+TGG | - | chr5_4:23404001-23404020 | Msa0844790:intron | 40.0% | |
| CATTGGACAAGAGACCAAAA+GGG | + | chr5_4:23404474-23404493 | None:intergenic | 40.0% | |
| TCATTGGACAAGAGACCAAA+AGG | + | chr5_4:23404475-23404494 | None:intergenic | 40.0% | |
| GTGCATTTGTCCATGTGATT+TGG | - | chr5_4:23404497-23404516 | Msa0844790:intron | 40.0% | |
| CACAGAAAAGATGTTGTCCA+TGG | + | chr5_4:23404629-23404648 | None:intergenic | 40.0% | |
| !! | AAATGTGGATTAGTTCTGCG+AGG | + | chr5_4:23404872-23404891 | None:intergenic | 40.0% |
| GCATAAACAATAGGCATGTC+TGG | + | chr5_4:23404896-23404915 | None:intergenic | 40.0% | |
| AATAGGTTATACGAGAGACG+AGG | - | chr5_4:23405076-23405095 | Msa0844790:CDS | 40.0% | |
| TTATACGAGAGACGAGGTAT+TGG | - | chr5_4:23405082-23405101 | Msa0844790:CDS | 40.0% | |
| ! | TATACGAGAGACGAGGTATT+GGG | - | chr5_4:23405083-23405102 | Msa0844790:CDS | 40.0% |
| !! | CGCAACTGTAGATTTTTAGG+TGG | - | chr5_4:23405107-23405126 | Msa0844790:intron | 40.0% |
| TCTTCACATATCACCTGTTC+GGG | - | chr5_4:23405416-23405435 | Msa0844790:intron | 40.0% | |
| AGCTTTCCCAACTCTTGTAT+CGG | + | chr5_4:23405632-23405651 | None:intergenic | 40.0% | |
| TACAAGAGTTGGGAAAGCTA+AGG | - | chr5_4:23405633-23405652 | Msa0844790:intron | 40.0% | |
| GAAAAGCTAAAATCCTAGCC+AGG | - | chr5_4:23405765-23405784 | Msa0844790:intron | 40.0% | |
| TTCCTGAAATAGATCATCCC+TGG | + | chr5_4:23405786-23405805 | None:intergenic | 40.0% | |
| ACTTGGGGAAACTAAAAGCA+AGG | + | chr5_4:23406463-23406482 | None:intergenic | 40.0% | |
| ! | GGGACTCTTTTATTGCACAA+AGG | + | chr5_4:23406550-23406569 | None:intergenic | 40.0% |
| GGGAATTTGAGGGAAAATCA+AGG | + | chr5_4:23406571-23406590 | None:intergenic | 40.0% | |
| CTAAAAGTGGAGGGAATTTG+AGG | + | chr5_4:23406582-23406601 | None:intergenic | 40.0% | |
| TTAGTCCTCCACTTCTCAAT+TGG | + | chr5_4:23406672-23406691 | None:intergenic | 40.0% | |
| ATCAAGCAATTGAGAAGTGG+AGG | - | chr5_4:23406783-23406802 | Msa0844790:intron | 40.0% | |
| ! | TCTAGGCTTGGTTGTTTAGA+AGG | - | chr5_4:23406973-23406992 | Msa0844790:intron | 40.0% |
| ! | GGTTACTAAGTTAAGCGTTG+TGG | - | chr5_4:23407187-23407206 | Msa0844790:CDS | 40.0% |
| GCTTAAGTGTAAGTTTAGGC+AGG | + | chr5_4:23407302-23407321 | None:intergenic | 40.0% | |
| GCAGAAGTGAAACCCATATA+TGG | + | chr5_4:23407535-23407554 | None:intergenic | 40.0% | |
| GGAAATTTCGGTAACAGTGT+CGG | - | chr5_4:23407586-23407605 | Msa0844790:CDS | 40.0% | |
| GAAATTTCGGTAACAGTGTC+GGG | - | chr5_4:23407587-23407606 | Msa0844790:CDS | 40.0% | |
| AGAAGACGCCTATAAAAACG+AGG | - | chr5_4:23407674-23407693 | Msa0844790:CDS | 40.0% | |
| ACGAGGAATATAGACAGTGT+TGG | - | chr5_4:23407691-23407710 | Msa0844790:CDS | 40.0% | |
| ATGAAACAGCTTAGTGTGGT+TGG | - | chr5_4:23407723-23407742 | Msa0844790:CDS | 40.0% | |
| AGTCATAGGATTACTGATGG+TGG | - | chr5_4:23407802-23407821 | Msa0844790:five_prime_UTR | 40.0% | |
| !!! | GATGGTGGATTTTTTGCCTT+TGG | - | chr5_4:23407817-23407836 | Msa0844790:five_prime_UTR | 40.0% |
| !!! | TCGATGGAGCAACGTTTTTT+GGG | + | chr5_4:23407882-23407901 | None:intergenic | 40.0% |
| AAATGGAGAAAGGTGGGGAA+GGG | + | chr5_4:23402037-23402056 | None:intergenic | 45.0% | |
| TTCCCCACCTTTCTCCATTT+GGG | - | chr5_4:23402037-23402056 | Msa0844790:three_prime_UTR | 45.0% | |
| ACTCCCAAATGGAGAAAGGT+GGG | + | chr5_4:23402043-23402062 | None:intergenic | 45.0% | |
| CTAGACTCCCAAATGGAGAA+AGG | + | chr5_4:23402047-23402066 | None:intergenic | 45.0% | |
| TGTGTGACTAGACTCCCAAA+TGG | + | chr5_4:23402054-23402073 | None:intergenic | 45.0% | |
| TGGGGTGTGATGAGGAAAAT+GGG | + | chr5_4:23402207-23402226 | None:intergenic | 45.0% | |
| TTGGGGTGTGATGAGGAAAA+TGG | + | chr5_4:23402208-23402227 | None:intergenic | 45.0% | |
| !! | GTGGTTTGAAAGTGATGGGT+CGG | + | chr5_4:23402551-23402570 | None:intergenic | 45.0% |
| CGTGGCTAGCGAAGATTATT+GGG | + | chr5_4:23402573-23402592 | None:intergenic | 45.0% | |
| GACGAAGTTCTTGGTAGAAG+TGG | - | chr5_4:23402622-23402641 | Msa0844790:intron | 45.0% | |
| TGGTTCCATGTTTCAAGGTC+CGG | - | chr5_4:23402642-23402661 | Msa0844790:intron | 45.0% | |
| ! | GAGAGAAGCGAACGTTGTTT+TGG | - | chr5_4:23402714-23402733 | Msa0844790:intron | 45.0% |
| !! | AAAAAACGGCACGCCGTTTT+GGG | - | chr5_4:23402747-23402766 | Msa0844790:intron | 45.0% |
| !! | TTAAGGGTTTATGGTGGTGG+TGG | - | chr5_4:23402850-23402869 | Msa0844790:intron | 45.0% |
| TTCGTCGTGTTTCTTCTTCC+AGG | - | chr5_4:23402953-23402972 | Msa0844790:intron | 45.0% | |
| CAATGCTGCAGAACTTCACT+CGG | - | chr5_4:23403311-23403330 | Msa0844790:intron | 45.0% | |
| ATCACGGTGCAGTTGTGATT+TGG | - | chr5_4:23403525-23403544 | Msa0844790:intron | 45.0% | |
| GTTAAGCTCCCAACTACACT+TGG | - | chr5_4:23403612-23403631 | Msa0844790:intron | 45.0% | |
| ! | ATGTGTCATGCCACTTGTGT+AGG | - | chr5_4:23403824-23403843 | Msa0844790:intron | 45.0% |
| TCATGCATTGCCTACACAAG+TGG | + | chr5_4:23403837-23403856 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr5_4:23404082-23404101 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr5_4:23404083-23404102 | None:intergenic | 45.0% |
| AACCCACTATAGCCAGTTGA+CGG | - | chr5_4:23404651-23404670 | Msa0844790:intron | 45.0% | |
| ATAGGCATGTCTGGCAAATG+TGG | + | chr5_4:23404887-23404906 | None:intergenic | 45.0% | |
| GCGTCACTGGCATAAACAAT+AGG | + | chr5_4:23404905-23404924 | None:intergenic | 45.0% | |
| !! | CAATTTCATGAAGGCGTCAC+TGG | + | chr5_4:23404918-23404937 | None:intergenic | 45.0% |
| GACGCCTTCATGAAATTGAC+AGG | - | chr5_4:23404920-23404939 | Msa0844790:CDS | 45.0% | |
| ! | GGCCGCAACTGTAGATTTTT+AGG | - | chr5_4:23405104-23405123 | Msa0844790:intron | 45.0% |
| GAAATAGATCATCCCTGGCT+AGG | + | chr5_4:23405781-23405800 | None:intergenic | 45.0% | |
| AGCCAGGGATGATCTATTTC+AGG | - | chr5_4:23405781-23405800 | Msa0844790:intron | 45.0% | |
| ! | TAGTAGTTGGGGCACCTATT+AGG | - | chr5_4:23406432-23406451 | Msa0844790:intron | 45.0% |
| CTATTTCGGTCCCTCACTTA+TGG | - | chr5_4:23406624-23406643 | Msa0844790:intron | 45.0% | |
| TCAATTGGACACAACCACGA+TGG | + | chr5_4:23406657-23406676 | None:intergenic | 45.0% | |
| GGTTGTGTCCAATTGAGAAG+TGG | - | chr5_4:23406661-23406680 | Msa0844790:intron | 45.0% | |
| TGTGTCCAATTGAGAAGTGG+AGG | - | chr5_4:23406664-23406683 | Msa0844790:intron | 45.0% | |
| TCTAGGCTTGGCTGTTAAGA+AGG | - | chr5_4:23406875-23406894 | Msa0844790:intron | 45.0% | |
| GAATACAATTGGGGAGAGCA+GGG | + | chr5_4:23407050-23407069 | None:intergenic | 45.0% | |
| TGAATACAATTGGGGAGAGC+AGG | + | chr5_4:23407051-23407070 | None:intergenic | 45.0% | |
| AGTTTAGGCAGGCAGAACAA+TGG | + | chr5_4:23407291-23407310 | None:intergenic | 45.0% | |
| !! | GTGATGGACAAGCATGGTTT+AGG | + | chr5_4:23407342-23407361 | None:intergenic | 45.0% |
| !! | AGAAGAGTGATGGACAAGCA+TGG | + | chr5_4:23407348-23407367 | None:intergenic | 45.0% |
| CAGGGAGAAAAGAAGAGTGA+TGG | + | chr5_4:23407358-23407377 | None:intergenic | 45.0% | |
| ! | CATCACTCTTCTTTTCTCCC+TGG | - | chr5_4:23407356-23407375 | Msa0844790:CDS | 45.0% |
| AGGAGTTTATCCATGTCTGC+TGG | - | chr5_4:23407765-23407784 | Msa0844790:five_prime_UTR | 45.0% | |
| CTTTGATGAACCAGCAGACA+TGG | + | chr5_4:23407778-23407797 | None:intergenic | 45.0% | |
| !!! | CGATGGAGCAACGTTTTTTG+GGG | + | chr5_4:23407881-23407900 | None:intergenic | 45.0% |
| !!! | CTCGATGGAGCAACGTTTTT+TGG | + | chr5_4:23407883-23407902 | None:intergenic | 45.0% |
| CAAATGGAGAAAGGTGGGGA+AGG | + | chr5_4:23402038-23402057 | None:intergenic | 50.0% | |
| CTTCCCCACCTTTCTCCATT+TGG | - | chr5_4:23402036-23402055 | Msa0844790:three_prime_UTR | 50.0% | |
| CTCCCAAATGGAGAAAGGTG+GGG | + | chr5_4:23402042-23402061 | None:intergenic | 50.0% | |
| GACTCCCAAATGGAGAAAGG+TGG | + | chr5_4:23402044-23402063 | None:intergenic | 50.0% | |
| GTGTGATGAGGAAAATGGGG+GGG | + | chr5_4:23402203-23402222 | None:intergenic | 50.0% | |
| GGTGTGATGAGGAAAATGGG+GGG | + | chr5_4:23402204-23402223 | None:intergenic | 50.0% | |
| GGGTGTGATGAGGAAAATGG+GGG | + | chr5_4:23402205-23402224 | None:intergenic | 50.0% | |
| GGGGTGTGATGAGGAAAATG+GGG | + | chr5_4:23402206-23402225 | None:intergenic | 50.0% | |
| TATGGGATTGGGGTGTGATG+AGG | + | chr5_4:23402215-23402234 | None:intergenic | 50.0% | |
| !! | GTCAAGTTGGCATGGTTGGA+AGG | + | chr5_4:23402254-23402273 | None:intergenic | 50.0% |
| GATGGGTCGGTGATTGTGAA+TGG | + | chr5_4:23402538-23402557 | None:intergenic | 50.0% | |
| GGCTAGCGAAGATTATTGGG+TGG | + | chr5_4:23402570-23402589 | None:intergenic | 50.0% | |
| GCGTGGCTAGCGAAGATTAT+TGG | + | chr5_4:23402574-23402593 | None:intergenic | 50.0% | |
| CAGTGATGTTGAGAAACGCG+TGG | + | chr5_4:23402591-23402610 | None:intergenic | 50.0% | |
| CACGCGTTTCTCAACATCAC+TGG | - | chr5_4:23402589-23402608 | Msa0844790:intron | 50.0% | |
| ! | GAAAAAACGGCACGCCGTTT+TGG | - | chr5_4:23402746-23402765 | Msa0844790:intron | 50.0% |
| !! | ACATGCACTTGGTGCGTTTG+TGG | - | chr5_4:23403433-23403452 | Msa0844790:intron | 50.0% |
| TGGTGCGTTTGTGGTGAGTT+TGG | - | chr5_4:23403442-23403461 | Msa0844790:intron | 50.0% | |
| TGGTGAGTTTGGCACAACCA+CGG | - | chr5_4:23403453-23403472 | Msa0844790:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr5_4:23404078-23404097 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr5_4:23404084-23404103 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr5_4:23404081-23404100 | Msa0844790:intron | 50.0% | |
| AACACCAGTTGCCCCTTTGA+GGG | - | chr5_4:23404202-23404221 | Msa0844790:intron | 50.0% | |
| ACCCACTATAGCCAGTTGAC+GGG | - | chr5_4:23404652-23404671 | Msa0844790:intron | 50.0% | |
| TCCCGTCAACTGGCTATAGT+GGG | + | chr5_4:23404656-23404675 | None:intergenic | 50.0% | |
| TTCCCGTCAACTGGCTATAG+TGG | + | chr5_4:23404657-23404676 | None:intergenic | 50.0% | |
| TAGCCAGTTGACGGGAAGAT+TGG | - | chr5_4:23404660-23404679 | Msa0844790:intron | 50.0% | |
| ACACCAATCTTCCCGTCAAC+TGG | + | chr5_4:23404666-23404685 | None:intergenic | 50.0% | |
| AGATGCAGCAATCCTGACGT+GGG | - | chr5_4:23404694-23404713 | Msa0844790:intron | 50.0% | |
| CAGTTGTAGTGCAGAGTCGT+CGG | + | chr5_4:23405141-23405160 | None:intergenic | 50.0% | |
| TTTCCAGTAGCATCCCGAAC+AGG | + | chr5_4:23405432-23405451 | None:intergenic | 50.0% | |
| TGTTCGGGATGCTACTGGAA+AGG | - | chr5_4:23405431-23405450 | Msa0844790:intron | 50.0% | |
| AGGAGAACCAGAGTCTCATC+AGG | + | chr5_4:23406175-23406194 | None:intergenic | 50.0% | |
| TGGTTGGGGACCATAAGTGA+GGG | + | chr5_4:23406637-23406656 | None:intergenic | 50.0% | |
| ATGGTTGGGGACCATAAGTG+AGG | + | chr5_4:23406638-23406657 | None:intergenic | 50.0% | |
| TGGACACAACCACGATGGTT+GGG | + | chr5_4:23406652-23406671 | None:intergenic | 50.0% | |
| TTGGACACAACCACGATGGT+TGG | + | chr5_4:23406653-23406672 | None:intergenic | 50.0% | |
| TCTCCCAATCACGAGACTTG+AGG | - | chr5_4:23406813-23406832 | Msa0844790:intron | 50.0% | |
| CTCCCAATCACGAGACTTGA+GGG | - | chr5_4:23406814-23406833 | Msa0844790:intron | 50.0% | |
| GTCCCTCAAGTCTCGTGATT+GGG | + | chr5_4:23406819-23406838 | None:intergenic | 50.0% | |
| AGTCCCTCAAGTCTCGTGAT+TGG | + | chr5_4:23406820-23406839 | None:intergenic | 50.0% | |
| GCAGGCAGAACAATGGAACA+TGG | + | chr5_4:23407284-23407303 | None:intergenic | 50.0% | |
| ! | TAGTGTGGTTGGTGCAGTCA+AGG | - | chr5_4:23407734-23407753 | Msa0844790:exon | 50.0% |
| TGTCGCCGGACCTTGAAACA+TGG | + | chr5_4:23402650-23402669 | None:intergenic | 55.0% | |
| GACATGTCGTAGGTCGGTGA+TGG | - | chr5_4:23402666-23402685 | Msa0844790:intron | 55.0% | |
| !! | AGGGTTTATGGTGGTGGTGG+TGG | - | chr5_4:23402853-23402872 | Msa0844790:intron | 55.0% |
| !! | GTTTATGGTGGTGGTGGTGG+TGG | - | chr5_4:23402856-23402875 | Msa0844790:intron | 55.0% |
| !! | TGGTGGTGGTGGTTCTGTTG+TGG | - | chr5_4:23402867-23402886 | Msa0844790:intron | 55.0% |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr5_4:23404070-23404089 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr5_4:23404069-23404088 | Msa0844790:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr5_4:23404070-23404089 | Msa0844790:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr5_4:23404076-23404095 | Msa0844790:intron | 55.0% | |
| !! | AGGGGCAACTGGTGTTGCTT+CGG | + | chr5_4:23404198-23404217 | None:intergenic | 55.0% |
| CAACACCAGTTGCCCCTTTG+AGG | - | chr5_4:23404201-23404220 | Msa0844790:intron | 55.0% | |
| TAGTCCCTCAAAGGGGCAAC+TGG | + | chr5_4:23404209-23404228 | None:intergenic | 55.0% | |
| TCATCATCACTTGCCTCGCG+TGG | + | chr5_4:23404586-23404605 | None:intergenic | 55.0% | |
| ! | GCGAGGCAAGTGATGATGAG+AGG | - | chr5_4:23404587-23404606 | Msa0844790:intron | 55.0% |
| !! | GAGAAGTGCTGTGACTGCCA+TGG | - | chr5_4:23404609-23404628 | Msa0844790:intron | 55.0% |
| GAGATGCAGCAATCCTGACG+TGG | - | chr5_4:23404693-23404712 | Msa0844790:intron | 55.0% | |
| GAGCTAAGAAGACCCACGTC+AGG | + | chr5_4:23404709-23404728 | None:intergenic | 55.0% | |
| CGACGACTCTGCACTACAAC+TGG | - | chr5_4:23405139-23405158 | Msa0844790:intron | 55.0% | |
| TCACCTGTTCGGGATGCTAC+TGG | - | chr5_4:23405426-23405445 | Msa0844790:intron | 55.0% | |
| CTTATGGTCCCCAACCATCG+TGG | - | chr5_4:23406640-23406659 | Msa0844790:intron | 55.0% | |
| GGACACAACCACGATGGTTG+GGG | + | chr5_4:23406651-23406670 | None:intergenic | 55.0% | |
| GTGCAGTCAAGGTTGCAGTG+AGG | - | chr5_4:23407745-23407764 | Msa0844790:exon | 55.0% | |
| CTTCGAGTGATTCTCGCGCG+TGG | + | chr5_4:23402498-23402517 | None:intergenic | 60.0% | |
| TTCGCGCGCGACGAAGTTCT+TGG | - | chr5_4:23402613-23402632 | Msa0844790:intron | 60.0% | |
| AAGGTCCGGCGACATGTCGT+AGG | - | chr5_4:23402656-23402675 | Msa0844790:intron | 60.0% | |
| TCCGGCGACATGTCGTAGGT+CGG | - | chr5_4:23402660-23402679 | Msa0844790:intron | 60.0% | |
| ACCGACCTACGACATGTCGC+CGG | + | chr5_4:23402664-23402683 | None:intergenic | 60.0% | |
| GGAGAGTGAAGAGCCACGCG+AGG | - | chr5_4:23404570-23404589 | Msa0844790:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 23402034 | 23408166 | 23402034 | ID=Msa0844790;Name=Msa0844790 |
| chr5_4 | mRNA | 23402034 | 23408166 | 23402034 | ID=Msa0844790-mRNA-1;Parent=Msa0844790;Name=Msa0844790-mRNA-1;_AED=0.09;_eAED=0.09;_QI=420|0.8|0.66|1|1|1|6|363|434 |
| chr5_4 | exon | 23402034 | 23402552 | 23402034 | ID=Msa0844790-mRNA-1:exon:9574;Parent=Msa0844790-mRNA-1 |
| chr5_4 | exon | 23404748 | 23404957 | 23404748 | ID=Msa0844790-mRNA-1:exon:9573;Parent=Msa0844790-mRNA-1 |
| chr5_4 | exon | 23405040 | 23405119 | 23405040 | ID=Msa0844790-mRNA-1:exon:9572;Parent=Msa0844790-mRNA-1 |
| chr5_4 | exon | 23405259 | 23405366 | 23405259 | ID=Msa0844790-mRNA-1:exon:9571;Parent=Msa0844790-mRNA-1 |
| chr5_4 | exon | 23405452 | 23405634 | 23405452 | ID=Msa0844790-mRNA-1:exon:9570;Parent=Msa0844790-mRNA-1 |
| chr5_4 | exon | 23407179 | 23408166 | 23407179 | ID=Msa0844790-mRNA-1:exon:9569;Parent=Msa0844790-mRNA-1 |
| chr5_4 | five_prime_UTR | 23407747 | 23408166 | 23407747 | ID=Msa0844790-mRNA-1:five_prime_utr;Parent=Msa0844790-mRNA-1 |
| chr5_4 | CDS | 23407179 | 23407746 | 23407179 | ID=Msa0844790-mRNA-1:cds;Parent=Msa0844790-mRNA-1 |
| chr5_4 | CDS | 23405452 | 23405634 | 23405452 | ID=Msa0844790-mRNA-1:cds;Parent=Msa0844790-mRNA-1 |
| chr5_4 | CDS | 23405259 | 23405366 | 23405259 | ID=Msa0844790-mRNA-1:cds;Parent=Msa0844790-mRNA-1 |
| chr5_4 | CDS | 23405040 | 23405119 | 23405040 | ID=Msa0844790-mRNA-1:cds;Parent=Msa0844790-mRNA-1 |
| chr5_4 | CDS | 23404748 | 23404957 | 23404748 | ID=Msa0844790-mRNA-1:cds;Parent=Msa0844790-mRNA-1 |
| chr5_4 | CDS | 23402397 | 23402552 | 23402397 | ID=Msa0844790-mRNA-1:cds;Parent=Msa0844790-mRNA-1 |
| chr5_4 | three_prime_UTR | 23402034 | 23402396 | 23402034 | ID=Msa0844790-mRNA-1:three_prime_utr;Parent=Msa0844790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
