AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1452200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1452200 MtrunA17_Chr4g0033641 83.803 284 2 2 1 284 1 240 1.01e-167 464
Msa1452200 MtrunA17_Chr2g0329511 58.681 288 70 4 1 284 1 243 9.30e-108 312
Msa1452200 MtrunA17_Chr2g0314671 32.508 323 130 11 1 284 1 274 2.18e-42 147
Msa1452200 MtrunA17_Chr3g0145061 41.714 175 99 2 1 172 1 175 2.17e-36 129
Msa1452200 MtrunA17_Chr1g0155811 58.095 105 43 1 1 104 1 105 2.57e-35 128
Msa1452200 MtrunA17_Chr4g0035651 49.558 113 56 1 1 112 1 113 4.67e-35 126
Msa1452200 MtrunA17_Chr3g0142221 39.286 168 87 3 1 166 1 155 2.60e-32 119
Msa1452200 MtrunA17_Chr5g0405151 42.537 134 71 4 1 131 1 131 1.60e-24 97.4
Msa1452200 MtrunA17_Chr7g0220721 43.478 92 43 1 5 96 26 108 1.03e-18 85.1
Msa1452200 MtrunA17_Chr1g0150471 27.652 264 150 6 5 257 6 239 1.45e-18 84.0
Msa1452200 MtrunA17_Chr3g0136701 43.750 96 45 1 5 100 6 92 2.25e-18 83.2
Msa1452200 MtrunA17_Chr4g0072871 39.130 92 47 1 5 96 22 104 1.27e-16 79.0
Msa1452200 MtrunA17_Chr7g0268691 41.837 98 47 2 5 102 20 107 1.48e-15 75.9
Msa1452200 MtrunA17_Chr5g0429341 35.417 96 53 1 1 96 1 87 9.30e-14 70.9
Msa1452200 MtrunA17_Chr3g0120711 38.542 96 49 2 1 96 1 86 1.23e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1452200 AT1G06040.1 53.793 290 86 5 1 284 1 248 1.37e-96 285
Msa1452200 AT2G31380.1 50.871 287 89 7 1 284 1 238 2.16e-85 256
Msa1452200 AT1G06040.2 66.071 168 51 3 1 162 1 168 6.38e-70 214
Msa1452200 AT1G78600.1 56.800 125 52 1 1 125 1 123 2.61e-41 144
Msa1452200 AT1G78600.2 56.800 125 52 1 1 125 1 123 4.20e-41 144
Msa1452200 AT4G10240.1 47.619 147 64 4 1 141 1 140 6.03e-36 126
Msa1452200 AT1G75540.1 56.522 115 47 2 1 112 1 115 1.54e-35 130
Msa1452200 AT4G39070.1 45.890 146 76 2 1 145 1 144 3.25e-33 122
Msa1452200 AT2G21320.1 50.000 104 49 2 1 104 1 101 1.12e-24 97.8
Msa1452200 AT4G38960.1 42.424 132 68 3 1 127 1 129 1.76e-24 97.4
Msa1452200 AT4G38960.6 42.424 132 68 3 1 127 1 129 1.76e-24 97.4
Msa1452200 AT5G15850.1 32.955 176 91 4 5 164 12 176 1.57e-19 87.4
Msa1452200 AT2G24790.2 43.478 92 43 1 5 96 8 90 1.97e-18 82.4
Msa1452200 AT2G24790.1 43.478 92 43 1 5 96 8 90 2.24e-18 83.6
Msa1452200 AT3G02380.1 43.478 92 43 1 5 96 16 98 1.60e-17 81.6
Msa1452200 AT5G15840.1 35.200 125 72 1 5 129 20 135 2.46e-17 81.6
Msa1452200 AT5G15840.2 35.200 125 72 1 5 129 20 135 3.08e-17 80.1
Msa1452200 AT5G24930.1 41.667 96 47 1 5 100 6 92 9.51e-17 79.7
Msa1452200 AT4G38960.3 32.000 175 68 4 1 127 1 172 1.28e-16 77.4
Msa1452200 AT2G47890.1 42.353 85 40 1 5 89 13 88 3.34e-14 72.0
Msa1452200 AT2G47890.3 42.353 85 40 1 5 89 13 88 3.43e-14 71.6
Msa1452200 AT2G47890.2 42.353 85 40 1 5 89 13 88 6.45e-14 70.1
Msa1452200 AT1G28050.1 34.653 101 57 1 2 102 6 97 6.31e-13 68.9
Msa1452200 AT1G68190.2 34.375 96 52 2 1 96 39 123 1.06e-12 68.2
Msa1452200 AT1G68190.1 34.375 96 52 2 1 96 10 94 1.19e-12 67.8
Msa1452200 AT1G68190.3 34.375 96 52 2 1 96 10 94 1.19e-12 67.8
Msa1452200 AT2G33500.1 34.000 100 57 1 3 102 10 100 1.60e-12 67.4
Msa1452200 AT2G33500.2 34.000 100 57 1 3 102 10 100 1.62e-12 67.4
Msa1452200 AT3G07650.3 37.647 85 44 1 1 85 1 76 2.93e-12 66.6
Msa1452200 AT3G07650.2 37.647 85 44 1 1 85 1 76 2.93e-12 66.6
Msa1452200 AT3G07650.4 37.647 85 44 1 1 85 1 76 2.93e-12 66.6
Msa1452200 AT3G07650.1 37.647 85 44 1 1 85 1 76 2.93e-12 66.6
Msa1452200 AT5G57660.1 33.333 93 49 2 4 96 21 100 2.94e-11 63.5
Msa1452200 AT5G48250.1 32.653 98 55 2 1 96 1 89 4.08e-11 63.2

Find 99 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGTAGCTGGTAGTCTTTC+TGG 0.109250 tig0033702:-23439 Msa1452200:CDS
TTGGGCTGTTGATGATTTCT+TGG 0.216145 tig0033702:-23257 Msa1452200:CDS
TGTTATCTTGAAGACCATTT+TGG 0.227854 tig0033702:-22019 Msa1452200:three_prime_UTR
TGCTCTATGTTCCTTAAGTA+TGG 0.249200 tig0033702:+21928 None:intergenic
GATGATTTCTTGGAATTAAC+TGG 0.278064 tig0033702:-23247 Msa1452200:CDS
TATAATATTCCAAACCCTTT+TGG 0.279477 tig0033702:+24675 None:intergenic
TGGCTTTGTGGTGTTGGCTT+GGG 0.286794 tig0033702:-22900 Msa1452200:CDS
CAGAAGCAATCCATGGAGTT+TGG 0.289917 tig0033702:-22541 Msa1452200:CDS
TTGGCTTTGTGGTGTTGGCT+TGG 0.298679 tig0033702:-22901 Msa1452200:CDS
ACTTGGCAGATATCACATTT+AGG 0.310599 tig0033702:+24431 None:intergenic
GTAAGACATATAAGATTTAG+AGG 0.311347 tig0033702:+22396 None:intergenic
TCACACCCTCCATGCAATAT+TGG 0.314951 tig0033702:-22071 Msa1452200:three_prime_UTR
TTATGTTGTGTATGGTACTA+TGG 0.330811 tig0033702:-22043 Msa1452200:three_prime_UTR
ACACTGCCAGCATGCATTAC+TGG 0.340744 tig0033702:+22433 None:intergenic
TACCGGTATCCGTGTGGCTT+TGG 0.344898 tig0033702:-23395 Msa1452200:CDS
ACGGGAACTTGTTGCGTGTC+TGG 0.356267 tig0033702:+23322 None:intergenic
GATATACCTAAGGAATTAAC+TGG 0.358592 tig0033702:-23147 Msa1452200:CDS
AAAATAGTCAAAAGTATTGA+TGG 0.360457 tig0033702:+24710 None:intergenic
TTGGGTTGGCTTTGTGGTGT+TGG 0.360864 tig0033702:-22906 Msa1452200:CDS
AGCGTAGAATTATACCTTAA+AGG 0.365074 tig0033702:-22145 Msa1452200:three_prime_UTR
TAAAGTTGTCTTACCTTGTC+TGG 0.367338 tig0033702:+23114 None:intergenic
TAAAGTTGTCTTACCTTGTC+TGG 0.367338 tig0033702:+23214 None:intergenic
ACCAACTTGGGTTGGCTTTG+TGG 0.367775 tig0033702:-22912 Msa1452200:CDS
TGCCTAGTTTCGCATCCTCT+TGG 0.378192 tig0033702:-23276 Msa1452200:CDS
CACACCCTCCATGCAATATT+GGG 0.380893 tig0033702:-22070 Msa1452200:three_prime_UTR
GCCTAGTTTCGCATCCTCTT+GGG 0.385410 tig0033702:-23275 Msa1452200:CDS
GTGGTGTTGGCTTGGGACCT+TGG 0.390948 tig0033702:-22893 Msa1452200:CDS
CTCATCCATCTACAGATTCA+TGG 0.393449 tig0033702:+22273 None:intergenic
CAAAACTGCTATAAGTACTA+TGG 0.400726 tig0033702:-21907 Msa1452200:three_prime_UTR
AGACTACCAGCTACATGAAT+TGG 0.402532 tig0033702:+23445 None:intergenic
AAGAGGTGTTGGATTTGATA+AGG 0.412876 tig0033702:-24621 Msa1452200:five_prime_UTR
CTAAACCTTCCTGAGGAAAC+TGG 0.421815 tig0033702:+22479 None:intergenic
GTGTAGCAATTATACCAAAA+TGG 0.430154 tig0033702:+22005 None:intergenic
ATTAACTTGATCCATACTTA+AGG 0.430475 tig0033702:-21939 Msa1452200:three_prime_UTR
TCAAAGCCAGTTAATTCCTT+AGG 0.432701 tig0033702:+23141 None:intergenic
TAAGATTTAGAGGCTTTGTA+AGG 0.437114 tig0033702:+22406 None:intergenic
CGATGATGATGAGCACTTCA+TGG 0.441777 tig0033702:-22341 Msa1452200:CDS
TGAGTGAATGGAATATGTTT+TGG 0.446035 tig0033702:+24783 None:intergenic
CATGTGCTTTAGCCGAGATC+TGG 0.447542 tig0033702:+22316 None:intergenic
TGGAGTTTGGAGAGCTTGAA+TGG 0.451045 tig0033702:-22528 Msa1452200:CDS
TGGGTAGTTTATGTTGTGTA+TGG 0.451498 tig0033702:-22051 Msa1452200:three_prime_UTR
ATCTGTGAAGGAAACCAACT+TGG 0.459264 tig0033702:-22925 Msa1452200:intron
TGTTGCGTGTCTGGATTAGA+TGG 0.466529 tig0033702:+23331 None:intergenic
TGTGCTCCTCTCAAGGTCTC+AGG 0.467446 tig0033702:-22868 Msa1452200:intron
CTGTTCCATGAATCTGTAGA+TGG 0.473976 tig0033702:-22278 Msa1452200:three_prime_UTR
AATTCCTTAGGTATATCCTT+AGG 0.474495 tig0033702:+23153 None:intergenic
CTTGGAGTGTGCTCCTCTCA+AGG 0.488214 tig0033702:-22875 Msa1452200:CDS
AGCCAAAGCCACACGGATAC+CGG 0.489165 tig0033702:+23393 None:intergenic
AAAGGTATTAAAACTTTGCA+TGG 0.491551 tig0033702:-22127 Msa1452200:three_prime_UTR
GCACAACAAATCACCGTAGC+AGG 0.495596 tig0033702:+24560 None:intergenic
ACAGATTCATGGAACAGAAC+AGG 0.495779 tig0033702:+22284 None:intergenic
CTGGATTAGATGGTTCAACT+TGG 0.497438 tig0033702:+23341 None:intergenic
TTTCAATGACCAGTTTCCTC+AGG 0.500064 tig0033702:-22488 Msa1452200:CDS
CTGAGGAGGAGAAACTTTGA+CGG 0.504586 tig0033702:+23303 None:intergenic
CACTTCATGGTGCCAGATCT+CGG 0.507917 tig0033702:-22328 Msa1452200:CDS
TACCGGTAGCAAGGAAGCGC+TGG 0.512715 tig0033702:+23410 None:intergenic
CTTGAATGGCTATCGGATGC+AGG 0.516958 tig0033702:-22514 Msa1452200:CDS
TGAAGGAAACCAACTTGGGT+TGG 0.518535 tig0033702:-22920 Msa1452200:intron
TATTGGAAGAGAAGAGGTGT+TGG 0.520050 tig0033702:-24632 Msa1452200:five_prime_UTR
TCAACACAAAATATGAAAGC+TGG 0.522233 tig0033702:+23502 None:intergenic
GCCCAAGAGGATGCGAAACT+AGG 0.529539 tig0033702:+23274 None:intergenic
TCATGTCGGACTTCAATCCT+AGG 0.531676 tig0033702:+22367 None:intergenic
AGACCGAGCACTGTTCTGTA+AGG 0.533969 tig0033702:-23479 Msa1452200:CDS
AGTGTGTGAATGAGAAGATA+AGG 0.538140 tig0033702:+24824 None:intergenic
AGCTTGCTAGCAAGCATCAA+AGG 0.550543 tig0033702:-24484 Msa1452200:CDS
TTCAAGCTCTCCAAACTCCA+TGG 0.552963 tig0033702:+22531 None:intergenic
CACCAGCGCTTCCTTGCTAC+CGG 0.553385 tig0033702:-23412 Msa1452200:CDS
ACCACAAAGCCAACCCAAGT+TGG 0.555335 tig0033702:+22911 None:intergenic
TGGAGAGCTTGAATGGCTAT+CGG 0.557707 tig0033702:-22521 Msa1452200:CDS
GGATTTAAGATATTTACCTA+AGG 0.563983 tig0033702:-23169 Msa1452200:CDS
ATAAACTACCCAATATTGCA+TGG 0.564087 tig0033702:+22062 None:intergenic
AAACTAGGCACTTGCTGAGG+AGG 0.565089 tig0033702:+23289 None:intergenic
TGGTATAATTGCTACACTGA+GGG 0.566135 tig0033702:-21999 Msa1452200:three_prime_UTR
CAACTTCCAGTAATGCATGC+TGG 0.570734 tig0033702:-22439 Msa1452200:CDS
GATCATTGTTTACAATCTAG+AGG 0.572052 tig0033702:-22097 Msa1452200:three_prime_UTR
TGAGGAGGAGAAACTTTGAC+GGG 0.575513 tig0033702:+23304 None:intergenic
AATGACCAGTTTCCTCAGGA+AGG 0.575639 tig0033702:-22484 Msa1452200:CDS
TAGTCAAAAGTATTGATGGA+TGG 0.582591 tig0033702:+24714 None:intergenic
ACTACCCAATATTGCATGGA+GGG 0.586758 tig0033702:+22066 None:intergenic
TTTACCTAAGGATATACCTA+AGG 0.587528 tig0033702:-23157 Msa1452200:CDS
CATCATCATCGTCTTCATGT+CGG 0.589449 tig0033702:+22353 None:intergenic
CGGTAGCAAGGAAGCGCTGG+TGG 0.597801 tig0033702:+23413 None:intergenic
GAAATCATCAACAGCCCAAG+AGG 0.601713 tig0033702:+23261 None:intergenic
ATGGAACAGAACAGGCGAGA+TGG 0.604332 tig0033702:+22292 None:intergenic
GATGAACCAATTCATGTAGC+TGG 0.610215 tig0033702:-23451 Msa1452200:CDS
TGGCTTTGATTCACCAGACA+AGG 0.610663 tig0033702:-23127 Msa1452200:intron
TGGCTTTGATTCACCAGACA+AGG 0.610663 tig0033702:-23227 Msa1452200:intron
GCATGCATTACTGGAAGTTG+CGG 0.617995 tig0033702:+22442 None:intergenic
CCACACGGATACCGGTAGCA+AGG 0.621121 tig0033702:+23401 None:intergenic
AACTAGAAGCCAAAGCCACA+CGG 0.621527 tig0033702:+23386 None:intergenic
AGTCCTTACAGAACAGTGCT+CGG 0.631276 tig0033702:+23476 None:intergenic
CTTGAGAGGAGCACACTCCA+AGG 0.644983 tig0033702:+22876 None:intergenic
CCTTGCTACCGGTATCCGTG+TGG 0.645262 tig0033702:-23401 Msa1452200:CDS
GCGAAACTAGGCACTTGCTG+AGG 0.649769 tig0033702:+23286 None:intergenic
TTGGTATAATTGCTACACTG+AGG 0.658332 tig0033702:-22000 Msa1452200:three_prime_UTR
ATCGAACCTGAGACCTTGAG+AGG 0.672799 tig0033702:+22862 None:intergenic
AACTACCCAATATTGCATGG+AGG 0.686860 tig0033702:+22065 None:intergenic
TCTGTGAAGGAAACCAACTT+GGG 0.719623 tig0033702:-22924 Msa1452200:intron
GCTGCAGCTAAACCTTCCTG+AGG 0.726877 tig0033702:+22472 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTAAAATAATATTTT+TGG - tig0033702:22221-22240 Msa1452200:three_prime_UTR 0.0%
!! AATTAAAAAAAAGACTTTAA+AGG + tig0033702:22208-22227 None:intergenic 10.0%
!!! AATAATATATTGAATTTTGT+AGG - tig0033702:22265-22284 Msa1452200:three_prime_UTR 10.0%
!! CAAATATTAAAACAATATAA+AGG + tig0033702:23919-23938 None:intergenic 10.0%
!!! CTTTATATTGTTTTAATATT+TGG - tig0033702:23917-23936 Msa1452200:intron 10.0%
!! GATAAACAGTTTAAAAATAT+TGG - tig0033702:21854-21873 Msa1452200:three_prime_UTR 15.0%
!! AATAAATTATTATGAGAGTT+TGG - tig0033702:22352-22371 Msa1452200:CDS 15.0%
!! CTTCTTATTCAAAATAAATA+GGG + tig0033702:22729-22748 None:intergenic 15.0%
!!! TTCATGATATTTAATTTTGT+AGG - tig0033702:23313-23332 Msa1452200:CDS 15.0%
!! ATATTAAAACAATATAAAGG+AGG + tig0033702:23916-23935 None:intergenic 15.0%
!!! AAAATAGTCAAAAGTATTGA+TGG + tig0033702:21796-21815 None:intergenic 20.0%
!!! TCAATACTTTTGACTATTTT+TGG - tig0033702:21796-21815 Msa1452200:three_prime_UTR 20.0%
!!! ATTTTGTAGGATTTAAGATT+AGG - tig0033702:22278-22297 Msa1452200:three_prime_UTR 20.0%
!!! TTTTGTAGGATTTAAGATTA+GGG - tig0033702:22279-22298 Msa1452200:three_prime_UTR 20.0%
!! TGTGCAAAAAAAAAATACAT+GGG + tig0033702:22406-22425 None:intergenic 20.0%
!! ATGTGCAAAAAAAAAATACA+TGG + tig0033702:22407-22426 None:intergenic 20.0%
!! GCTTCTTATTCAAAATAAAT+AGG + tig0033702:22730-22749 None:intergenic 20.0%
!!! TCTGTTTATATGAATTTTTG+AGG - tig0033702:23790-23809 Msa1452200:intron 20.0%
!! TACTGTTAACATAATCATAA+AGG + tig0033702:23877-23896 None:intergenic 20.0%
!!! TAAAATGTCATTTTTGTTGA+CGG + tig0033702:24705-24724 None:intergenic 20.0%
!! TCAAAAAAATCATTGTAAGT+TGG - tig0033702:24771-24790 Msa1452200:five_prime_UTR 20.0%
!! TATAATATTCCAAACCCTTT+TGG + tig0033702:21831-21850 None:intergenic 25.0%
! TAAAAATATTGGAAGAGAAG+AGG - tig0033702:21865-21884 Msa1452200:three_prime_UTR 25.0%
! AAAATCTTCATGAATCTACA+TGG + tig0033702:22450-22469 None:intergenic 25.0%
! ATGCTATAATTGTCTTTGAT+TGG - tig0033702:22513-22532 Msa1452200:CDS 25.0%
! ATAATTGTCTTTGATTGGAT+TGG - tig0033702:22518-22537 Msa1452200:CDS 25.0%
!!! AAGACATTGATTTCTATCTA+TGG + tig0033702:22574-22593 None:intergenic 25.0%
! ATAGATAGAAATCAATGTCT+TGG - tig0033702:22573-22592 Msa1452200:intron 25.0%
! AATCAATGTCTTGGAATAAA+TGG - tig0033702:22582-22601 Msa1452200:intron 25.0%
!!! ATTTTGAATAAGAAGCATCT+AGG - tig0033702:22734-22753 Msa1452200:intron 25.0%
! ATCCTATAGTTATAAGATGA+AGG + tig0033702:22978-22997 None:intergenic 25.0%
!! GGATTTAAGATATTTACCTA+AGG - tig0033702:23334-23353 Msa1452200:CDS 25.0%
! TGAGAGATTATGATTTATGA+TGG - tig0033702:23467-23486 Msa1452200:CDS 25.0%
!! AGATTATGATTTATGATGGA+GGG - tig0033702:23471-23490 Msa1452200:CDS 25.0%
! CATTATTTCATTAAACGAAC+TGG + tig0033702:23718-23737 None:intergenic 25.0%
! TCATATAAACAGAAACCAAA+CGG + tig0033702:23783-23802 None:intergenic 25.0%
! GTAAGACATATAAGATTTAG+AGG + tig0033702:24110-24129 None:intergenic 25.0%
!!! GCAAAGTTTTAATACCTTTA+AGG + tig0033702:24375-24394 None:intergenic 25.0%
!!! AAAGGTATTAAAACTTTGCA+TGG - tig0033702:24376-24395 Msa1452200:intron 25.0%
!! ATTAACTTGATCCATACTTA+AGG - tig0033702:24564-24583 Msa1452200:CDS 25.0%
! TGAGTGAATGGAATATGTTT+TGG + tig0033702:21723-21742 None:intergenic 30.0%
! ATTGAAAAAGTGTGAGTGAA+TGG + tig0033702:21735-21754 None:intergenic 30.0%
!! TAGTCAAAAGTATTGATGGA+TGG + tig0033702:21792-21811 None:intergenic 30.0%
!!! TTTTGGCTTGAAAAACCAAA+AGG - tig0033702:21813-21832 Msa1452200:three_prime_UTR 30.0%
!! TTTGGCTTGAAAAACCAAAA+GGG - tig0033702:21814-21833 Msa1452200:three_prime_UTR 30.0%
AGCAAAAACAAAACCATACT+TGG + tig0033702:22092-22111 None:intergenic 30.0%
!! ACACTTTTGATCGATTCTTT+AGG + tig0033702:22699-22718 None:intergenic 30.0%
AATGCTAAATCTGATGTACT+GGG + tig0033702:22776-22795 None:intergenic 30.0%
AAATGCTAAATCTGATGTAC+TGG + tig0033702:22777-22796 None:intergenic 30.0%
AAAATTGCAATATTCGGATC+GGG + tig0033702:22867-22886 None:intergenic 30.0%
GAAAATTGCAATATTCGGAT+CGG + tig0033702:22868-22887 None:intergenic 30.0%
! TTTTGAATTGTGTTTCGAAC+TGG - tig0033702:22895-22914 Msa1452200:CDS 30.0%
!!! ATGGATGATTTTACTGACTT+TGG - tig0033702:22952-22971 Msa1452200:intron 30.0%
TCAACACAAAATATGAAAGC+TGG + tig0033702:23004-23023 None:intergenic 30.0%
GATGATTTCTTGGAATTAAC+TGG - tig0033702:23256-23275 Msa1452200:CDS 30.0%
TTTACCTAAGGATATACCTA+AGG - tig0033702:23346-23365 Msa1452200:CDS 30.0%
AATTCCTTAGGTATATCCTT+AGG + tig0033702:23353-23372 None:intergenic 30.0%
GATATACCTAAGGAATTAAC+TGG - tig0033702:23356-23375 Msa1452200:CDS 30.0%
GAGATTATGATTTATGATGG+AGG - tig0033702:23470-23489 Msa1452200:CDS 30.0%
! TGTTGATAAATGATCTGTGA+AGG - tig0033702:23566-23585 Msa1452200:intron 30.0%
TGAGGTCTTGAATTAATACT+TGG - tig0033702:23808-23827 Msa1452200:intron 30.0%
! TTGCTTCTGAAAAGAAAGAA+AGG + tig0033702:23951-23970 None:intergenic 30.0%
! TAAGATTTAGAGGCTTTGTA+AGG + tig0033702:24100-24119 None:intergenic 30.0%
ATATGTCTTACAAAAAGCCT+AGG - tig0033702:24119-24138 Msa1452200:intron 30.0%
AGCGTAGAATTATACCTTAA+AGG - tig0033702:24358-24377 Msa1452200:intron 30.0%
GATCATTGTTTACAATCTAG+AGG - tig0033702:24406-24425 Msa1452200:intron 30.0%
ATAAACTACCCAATATTGCA+TGG + tig0033702:24444-24463 None:intergenic 30.0%
TTATGTTGTGTATGGTACTA+TGG - tig0033702:24460-24479 Msa1452200:CDS 30.0%
! TGTTATCTTGAAGACCATTT+TGG - tig0033702:24484-24503 Msa1452200:CDS 30.0%
GTGTAGCAATTATACCAAAA+TGG + tig0033702:24501-24520 None:intergenic 30.0%
CAAAACTGCTATAAGTACTA+TGG - tig0033702:24596-24615 Msa1452200:CDS 30.0%
! TTCTTTTGTCATGTGATACA+TGG + tig0033702:24835-24854 None:intergenic 30.0%
AGTGTGTGAATGAGAAGATA+AGG + tig0033702:21682-21701 None:intergenic 35.0%
CTTGAAAAACCAAAAGGGTT+TGG - tig0033702:21819-21838 Msa1452200:three_prime_UTR 35.0%
!! AAGAGGTGTTGGATTTGATA+AGG - tig0033702:21882-21901 Msa1452200:three_prime_UTR 35.0%
ACTTGGCAGATATCACATTT+AGG + tig0033702:22075-22094 None:intergenic 35.0%
AATGTGATATCTGCCAAGTA+TGG - tig0033702:22076-22095 Msa1452200:three_prime_UTR 35.0%
CCGGTGAAAATTGCAATATT+CGG + tig0033702:22873-22892 None:intergenic 35.0%
! CCGAATATTGCAATTTTCAC+CGG - tig0033702:22870-22889 Msa1452200:CDS 35.0%
! CGAATATTGCAATTTTCACC+GGG - tig0033702:22871-22890 Msa1452200:CDS 35.0%
CGAAACACAATTCAAAATCC+CGG + tig0033702:22892-22911 None:intergenic 35.0%
! GTTGAAGTATTTGCTGAACA+TGG - tig0033702:22933-22952 Msa1452200:intron 35.0%
GGCCTTCATCTTATAACTAT+AGG - tig0033702:22973-22992 Msa1452200:intron 35.0%
!! TTGGCTTTTCTCATTGTCTT+TGG + tig0033702:23146-23165 None:intergenic 35.0%
TAAAGTTGTCTTACCTTGTC+TGG + tig0033702:23292-23311 None:intergenic 35.0%
TCAAAGCCAGTTAATTCCTT+AGG + tig0033702:23365-23384 None:intergenic 35.0%
TAAAGTTGTCTTACCTTGTC+TGG + tig0033702:23292-23311 None:intergenic 35.0%
! TTCTTTTCAGAAGCAATCCA+TGG - tig0033702:23955-23974 Msa1452200:intron 35.0%
TGGGTAGTTTATGTTGTGTA+TGG - tig0033702:24452-24471 Msa1452200:CDS 35.0%
TTGGTATAATTGCTACACTG+AGG - tig0033702:24503-24522 Msa1452200:CDS 35.0%
TGGTATAATTGCTACACTGA+GGG - tig0033702:24504-24523 Msa1452200:CDS 35.0%
TGCTCTATGTTCCTTAAGTA+TGG + tig0033702:24578-24597 None:intergenic 35.0%
! CACACTCGCTATATTTTGCA+TGG - tig0033702:21696-21715 Msa1452200:three_prime_UTR 40.0%
! TATTGGAAGAGAAGAGGTGT+TGG - tig0033702:21871-21890 Msa1452200:three_prime_UTR 40.0%
GATGATGTTGTGTTTGTAGC+AGG - tig0033702:22604-22623 Msa1452200:intron 40.0%
!! TAAGGGTTAGTCTAGTGGTA+TGG + tig0033702:22658-22677 None:intergenic 40.0%
ATACCACTAGACTAACCCTT+AGG - tig0033702:22657-22676 Msa1452200:intron 40.0%
TACCACTAGACTAACCCTTA+GGG - tig0033702:22658-22677 Msa1452200:intron 40.0%
!! GATTCTCTAAAGCCATTGCA+CGG + tig0033702:22845-22864 None:intergenic 40.0%
GATGAACCAATTCATGTAGC+TGG - tig0033702:23052-23071 Msa1452200:intron 40.0%
AGACTACCAGCTACATGAAT+TGG + tig0033702:23061-23080 None:intergenic 40.0%
! CTGGATTAGATGGTTCAACT+TGG + tig0033702:23165-23184 None:intergenic 40.0%
!! TTGGGCTGTTGATGATTTCT+TGG - tig0033702:23246-23265 Msa1452200:CDS 40.0%
ATCTGTGAAGGAAACCAACT+TGG - tig0033702:23578-23597 Msa1452200:intron 40.0%
TCTGTGAAGGAAACCAACTT+GGG - tig0033702:23579-23598 Msa1452200:intron 40.0%
CCAAACTAACCCACCAAAAT+GGG + tig0033702:23678-23697 None:intergenic 40.0%
ACTTGGAACCATATTTGCAC+AGG - tig0033702:23825-23844 Msa1452200:intron 40.0%
AACCATATTTGCACAGGCAA+TGG - tig0033702:23831-23850 Msa1452200:intron 40.0%
TACCATTGCCTGTGCAAATA+TGG + tig0033702:23836-23855 None:intergenic 40.0%
TATTTGCACAGGCAATGGTA+AGG - tig0033702:23836-23855 Msa1452200:intron 40.0%
TTTCAATGACCAGTTTCCTC+AGG - tig0033702:24015-24034 Msa1452200:intron 40.0%
CATCATCATCGTCTTCATGT+CGG + tig0033702:24153-24172 None:intergenic 40.0%
ACAGATTCATGGAACAGAAC+AGG + tig0033702:24222-24241 None:intergenic 40.0%
CTGTTCCATGAATCTGTAGA+TGG - tig0033702:24225-24244 Msa1452200:intron 40.0%
CTCATCCATCTACAGATTCA+TGG + tig0033702:24233-24252 None:intergenic 40.0%
ACTACCCAATATTGCATGGA+GGG + tig0033702:24440-24459 None:intergenic 40.0%
AACTACCCAATATTGCATGG+AGG + tig0033702:24441-24460 None:intergenic 40.0%
GTGTGAAAAAGCTCCTGCTA+CGG - tig0033702:21930-21949 Msa1452200:three_prime_UTR 45.0%
!! AGCTTGCTAGCAAGCATCAA+AGG - tig0033702:22019-22038 Msa1452200:three_prime_UTR 45.0%
CAGGAATCGAACCCTTTCTT+CGG - tig0033702:22623-22642 Msa1452200:intron 45.0%
ATGTCCTATTCGTGCCCTAA+GGG + tig0033702:22675-22694 None:intergenic 45.0%
AAAGCCATTGCACGGTGTAA+CGG + tig0033702:22837-22856 None:intergenic 45.0%
AGTCCTTACAGAACAGTGCT+CGG + tig0033702:23030-23049 None:intergenic 45.0%
CATGTAGCTGGTAGTCTTTC+TGG - tig0033702:23064-23083 Msa1452200:intron 45.0%
AACTAGAAGCCAAAGCCACA+CGG + tig0033702:23120-23139 None:intergenic 45.0%
! TGTTGCGTGTCTGGATTAGA+TGG + tig0033702:23175-23194 None:intergenic 45.0%
TGAGGAGGAGAAACTTTGAC+GGG + tig0033702:23202-23221 None:intergenic 45.0%
CTGAGGAGGAGAAACTTTGA+CGG + tig0033702:23203-23222 None:intergenic 45.0%
GAAATCATCAACAGCCCAAG+AGG + tig0033702:23245-23264 None:intergenic 45.0%
!! TGGCTTTGATTCACCAGACA+AGG - tig0033702:23276-23295 Msa1452200:CDS 45.0%
!! TGGCTTTGATTCACCAGACA+AGG - tig0033702:23276-23295 Msa1452200:CDS 45.0%
TGAAGGAAACCAACTTGGGT+TGG - tig0033702:23583-23602 Msa1452200:intron 45.0%
TAACCCACCAAAATGGGTAC+CGG + tig0033702:23672-23691 None:intergenic 45.0%
!!! CCCATTTTGGTGGGTTAGTT+TGG - tig0033702:23675-23694 Msa1452200:intron 45.0%
GCCAAACTAACCCACCAAAA+TGG + tig0033702:23679-23698 None:intergenic 45.0%
!! GGGTTAGTTTGGCTCTATGA+AGG - tig0033702:23686-23705 Msa1452200:intron 45.0%
TACACACTAACTCTGCCGTT+TGG - tig0033702:23765-23784 Msa1452200:intron 45.0%
CAGAAGCAATCCATGGAGTT+TGG - tig0033702:23962-23981 Msa1452200:intron 45.0%
TTCAAGCTCTCCAAACTCCA+TGG + tig0033702:23975-23994 None:intergenic 45.0%
TGGAGTTTGGAGAGCTTGAA+TGG - tig0033702:23975-23994 Msa1452200:intron 45.0%
TGGAGAGCTTGAATGGCTAT+CGG - tig0033702:23982-24001 Msa1452200:intron 45.0%
AATGACCAGTTTCCTCAGGA+AGG - tig0033702:24019-24038 Msa1452200:intron 45.0%
CTAAACCTTCCTGAGGAAAC+TGG + tig0033702:24027-24046 None:intergenic 45.0%
GCATGCATTACTGGAAGTTG+CGG + tig0033702:24064-24083 None:intergenic 45.0%
CAACTTCCAGTAATGCATGC+TGG - tig0033702:24064-24083 Msa1452200:intron 45.0%
TCATGTCGGACTTCAATCCT+AGG + tig0033702:24139-24158 None:intergenic 45.0%
! CGATGATGATGAGCACTTCA+TGG - tig0033702:24162-24181 Msa1452200:intron 45.0%
TCACACCCTCCATGCAATAT+TGG - tig0033702:24432-24451 Msa1452200:intron 45.0%
CACACCCTCCATGCAATATT+GGG - tig0033702:24433-24452 Msa1452200:CDS 45.0%
GCACAACAAATCACCGTAGC+AGG + tig0033702:21946-21965 None:intergenic 50.0%
GGACTGAGACACCGAAGAAA+GGG + tig0033702:22637-22656 None:intergenic 50.0%
TGGACTGAGACACCGAAGAA+AGG + tig0033702:22638-22657 None:intergenic 50.0%
!! TGCCCTAAGGGTTAGTCTAG+TGG + tig0033702:22663-22682 None:intergenic 50.0%
CTAACCCTTAGGGCACGAAT+AGG - tig0033702:22668-22687 Msa1452200:intron 50.0%
CATGTCCTATTCGTGCCCTA+AGG + tig0033702:22676-22695 None:intergenic 50.0%
AAGCCATTGCACGGTGTAAC+GGG + tig0033702:22836-22855 None:intergenic 50.0%
! AGACCGAGCACTGTTCTGTA+AGG - tig0033702:23024-23043 Msa1452200:intron 50.0%
! AAACTAGGCACTTGCTGAGG+AGG + tig0033702:23217-23236 None:intergenic 50.0%
TGCCTAGTTTCGCATCCTCT+TGG - tig0033702:23227-23246 Msa1452200:intron 50.0%
GCCTAGTTTCGCATCCTCTT+GGG - tig0033702:23228-23247 Msa1452200:CDS 50.0%
!! ACCAACTTGGGTTGGCTTTG+TGG - tig0033702:23591-23610 Msa1452200:intron 50.0%
ACCACAAAGCCAACCCAAGT+TGG + tig0033702:23595-23614 None:intergenic 50.0%
!! TTGGGTTGGCTTTGTGGTGT+TGG - tig0033702:23597-23616 Msa1452200:intron 50.0%
!! TTGGCTTTGTGGTGTTGGCT+TGG - tig0033702:23602-23621 Msa1452200:intron 50.0%
!! TGGCTTTGTGGTGTTGGCTT+GGG - tig0033702:23603-23622 Msa1452200:intron 50.0%
ATCGAACCTGAGACCTTGAG+AGG + tig0033702:23644-23663 None:intergenic 50.0%
! ATTCTCCCCGGTACCCATTT+TGG - tig0033702:23662-23681 Msa1452200:intron 50.0%
AACCCACCAAAATGGGTACC+GGG + tig0033702:23671-23690 None:intergenic 50.0%
CTTGAATGGCTATCGGATGC+AGG - tig0033702:23989-24008 Msa1452200:intron 50.0%
ACACTGCCAGCATGCATTAC+TGG + tig0033702:24073-24092 None:intergenic 50.0%
! CACTTCATGGTGCCAGATCT+CGG - tig0033702:24175-24194 Msa1452200:intron 50.0%
CATGTGCTTTAGCCGAGATC+TGG + tig0033702:24190-24209 None:intergenic 50.0%
ATGGAACAGAACAGGCGAGA+TGG + tig0033702:24214-24233 None:intergenic 50.0%
!! TTGCACGGTGTAACGGGTTG+TGG + tig0033702:22830-22849 None:intergenic 55.0%
CAACCCGTTACACCGTGCAA+TGG - tig0033702:22830-22849 Msa1452200:intron 55.0%
TACCGGTATCCGTGTGGCTT+TGG - tig0033702:23108-23127 Msa1452200:intron 55.0%
AGCCAAAGCCACACGGATAC+CGG + tig0033702:23113-23132 None:intergenic 55.0%
!! ACGGGAACTTGTTGCGTGTC+TGG + tig0033702:23184-23203 None:intergenic 55.0%
! GCGAAACTAGGCACTTGCTG+AGG + tig0033702:23220-23239 None:intergenic 55.0%
GCCCAAGAGGATGCGAAACT+AGG + tig0033702:23232-23251 None:intergenic 55.0%
! CTTGAGAGGAGCACACTCCA+AGG + tig0033702:23630-23649 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - tig0033702:23628-23647 Msa1452200:intron 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG - tig0033702:23635-23654 Msa1452200:intron 55.0%
GTCTCAGGTTCGATTCTCCC+CGG - tig0033702:23650-23669 Msa1452200:intron 55.0%
!! TCCCCGGTACCCATTTTGGT+GGG - tig0033702:23666-23685 Msa1452200:intron 55.0%
! ACCCACCAAAATGGGTACCG+GGG + tig0033702:23670-23689 None:intergenic 55.0%
GCTGCAGCTAAACCTTCCTG+AGG + tig0033702:24034-24053 None:intergenic 55.0%
CACCAGCGCTTCCTTGCTAC+CGG - tig0033702:23091-23110 Msa1452200:intron 60.0%
! TACCGGTAGCAAGGAAGCGC+TGG + tig0033702:23096-23115 None:intergenic 60.0%
CCACACGGATACCGGTAGCA+AGG + tig0033702:23105-23124 None:intergenic 60.0%
CCTTGCTACCGGTATCCGTG+TGG - tig0033702:23102-23121 Msa1452200:intron 60.0%
!! GTGGTGTTGGCTTGGGACCT+TGG - tig0033702:23610-23629 Msa1452200:intron 60.0%
! CTCCCCGGTACCCATTTTGG+TGG - tig0033702:23665-23684 Msa1452200:intron 60.0%
!! CGGTAGCAAGGAAGCGCTGG+TGG + tig0033702:23093-23112 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0033702 gene 21670 24855 21670 ID=Msa1452200;Name=Msa1452200
tig0033702 mRNA 21670 24855 21670 ID=Msa1452200-mRNA-1;Parent=Msa1452200;Name=Msa1452200-mRNA-1;_AED=0.12;_eAED=0.12;_QI=240|0.5|0.6|1|1|1|5|654|284
tig0033702 exon 21670 22560 21670 ID=Msa1452200-mRNA-1:exon:18461;Parent=Msa1452200-mRNA-1
tig0033702 exon 22869 22937 22869 ID=Msa1452200-mRNA-1:exon:18460;Parent=Msa1452200-mRNA-1
tig0033702 exon 23128 23190 23128 ID=Msa1452200-mRNA-1:exon:18459;Parent=Msa1452200-mRNA-1
tig0033702 exon 23228 23530 23228 ID=Msa1452200-mRNA-1:exon:18458;Parent=Msa1452200-mRNA-1
tig0033702 exon 24433 24855 24433 ID=Msa1452200-mRNA-1:exon:18457;Parent=Msa1452200-mRNA-1
tig0033702 five_prime_UTR 24616 24855 24616 ID=Msa1452200-mRNA-1:five_prime_utr;Parent=Msa1452200-mRNA-1
tig0033702 CDS 24433 24615 24433 ID=Msa1452200-mRNA-1:cds;Parent=Msa1452200-mRNA-1
tig0033702 CDS 23228 23530 23228 ID=Msa1452200-mRNA-1:cds;Parent=Msa1452200-mRNA-1
tig0033702 CDS 23128 23190 23128 ID=Msa1452200-mRNA-1:cds;Parent=Msa1452200-mRNA-1
tig0033702 CDS 22869 22937 22869 ID=Msa1452200-mRNA-1:cds;Parent=Msa1452200-mRNA-1
tig0033702 CDS 22324 22560 22324 ID=Msa1452200-mRNA-1:cds;Parent=Msa1452200-mRNA-1
tig0033702 three_prime_UTR 21670 22323 21670 ID=Msa1452200-mRNA-1:three_prime_utr;Parent=Msa1452200-mRNA-1
Gene Sequence

>Msa1452200

ATGAAAATACAGTGTGATGTGTGTGAAAAAGCTCCTGCTACGGTGATTTGTTGTGCTGATGAAGCTGCTTTGTGTGCTAAATGTGATGTTGAAGTTCATGCTGCTAATAAGCTTGCTAGCAAGCATCAAAGGCTTCTTCTTCAATGTCTTTCTAACAAGCTTCCTAAATGTGATATCTGCCAAGATAAGCCAGCTTTCATATTTTGTGTTGAAGACCGAGCACTGTTCTGTAAGGACTGTGATGAACCAATTCATGTAGCTGGTAGTCTTTCTGGAAACCACCAGCGCTTCCTTGCTACCGGTATCCGTGTGGCTTTGGCTTCTAGTTGCACCAAAGACAATGAGAAAAGCCAAGTTGAACCATCTAATCCAGACACGCAACAAGTTCCCGTCAAAGTTTCTCCTCCTCAGCAAGTGCCTAGTTTCGCATCCTCTTGGGCTGTTGATGATTTCTTGGAATTAACTGGCTTTGATTCACCAGACAAGGATTTAAGATATTTACCTAAGGATATACCTAAGGAATTAACTGGCTTTGATTCACCAGACAAGGAAACCAACTTGGGTTGGCTTTGTGGTGTTGGCTTGGGACCTTGGAGTGTGCTCCTCTCAAGGTCTCAGAAGCAATCCATGGAGTTTGGAGAGCTTGAATGGCTATCGGATGCAGGTCTTTTCAATGACCAGTTTCCTCAGGAAGGTTTAGCTGCAGCTGAAGTTCCGCAACTTCCAGTAATGCATGCTGGCAGTGTTTATCCTTACAAAGCCTCTAAATCTTATATGTCTTACAAAAAGCCTAGGATTGAAGTCCGACATGAAGACGATGATGATGAGCACTTCATGGTGCCAGATCTCGGCTAA

Protein sequence

>Msa1452200

MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPKCDICQDKPAFIFCVEDRALFCKDCDEPIHVAGSLSGNHQRFLATGIRVALASSCTKDNEKSQVEPSNPDTQQVPVKVSPPQQVPSFASSWAVDDFLELTGFDSPDKDLRYLPKDIPKELTGFDSPDKETNLGWLCGVGLGPWSVLLSRSQKQSMEFGELEWLSDAGLFNDQFPQEGLAAAEVPQLPVMHAGSVYPYKASKSYMSYKKPRIEVRHEDDDDEHFMVPDLG*