AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1349810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349810 MtrunA17_Chr3g0090001 91.563 403 26 1 1 395 1 403 0.0 682
Msa1349810 MtrunA17_Chr3g0089951 95.000 100 5 0 242 341 1 100 6.31e-54 174
Msa1349810 MtrunA17_Chr7g0264491 35.000 300 182 1 108 394 254 553 7.29e-48 171
Msa1349810 MtrunA17_Chr3g0145921 37.131 237 149 0 159 395 335 571 3.14e-46 167
Msa1349810 MtrunA17_Chr1g0180881 31.629 313 196 3 95 394 250 557 5.37e-42 155
Msa1349810 MtrunA17_Chr4g0021031 37.269 271 152 5 124 383 227 490 5.07e-40 149
Msa1349810 MtrunA17_Chr1g0146481 33.065 248 159 2 148 394 306 547 6.26e-37 140
Msa1349810 MtrunA17_Chr3g0126401 28.405 257 177 4 143 395 261 514 5.19e-18 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349810 AT5G13730.1 56.811 301 120 2 103 393 114 414 2.49e-112 335
Msa1349810 AT2G36990.1 32.673 303 191 1 105 394 241 543 9.40e-46 165
Msa1349810 AT1G08540.1 35.865 237 152 0 159 395 333 569 3.59e-44 161
Msa1349810 AT1G64860.1 35.314 303 169 6 103 383 191 488 1.88e-40 150
Msa1349810 AT3G53920.1 32.911 237 158 1 159 394 333 569 2.79e-34 134
Msa1349810 AT1G64860.2 34.164 281 158 6 103 361 191 466 6.28e-33 129
Msa1349810 AT5G24120.1 26.606 218 152 3 181 395 305 517 1.23e-15 79.0
Msa1349810 AT5G24120.3 26.606 218 152 3 181 395 305 517 1.23e-15 79.0
Msa1349810 AT5G24120.2 26.606 218 152 3 181 395 305 517 1.23e-15 79.0
Msa1349810 AT3G53920.2 42.308 78 45 0 159 236 333 410 1.46e-14 75.1

Find 82 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGTACAAATTTGGTTTA+TGG 0.152805 tig0010977:+176306 Msa1349810:CDS
CCTATTCATAAATCTTAATT+AGG 0.157138 tig0010977:-178658 None:intergenic
CTCAAAGGTTGGTACAAATT+TGG 0.165763 tig0010977:+176299 Msa1349810:CDS
CCTAATTAAGATTTATGAAT+AGG 0.263201 tig0010977:+178658 Msa1349810:three_prime_UTR
ATAGCTCTGTCCAATGAAAT+TGG 0.295581 tig0010977:-178197 None:intergenic
ACAAGGCATGATTAAAGCTT+TGG 0.334814 tig0010977:+177407 Msa1349810:CDS
TATTTATAGGGAGAAAAGTA+TGG 0.343959 tig0010977:+178038 Msa1349810:intron
GTTGAGGTGTGGTTTGTGTA+TGG 0.357469 tig0010977:-176186 None:intergenic
GCTAGAAATGCTGCAGCTGC+TGG 0.362443 tig0010977:+176393 Msa1349810:CDS
TGCTATTTCAAGGTTTACTT+TGG 0.382886 tig0010977:+177084 Msa1349810:CDS
GGAACCATTGGACTTCTTCA+TGG 0.384588 tig0010977:+177321 Msa1349810:CDS
ATATTATACTTTGGACTCAA+TGG 0.405310 tig0010977:+178484 Msa1349810:CDS
GTTGTAGGGTCTGTGACATC+AGG 0.407779 tig0010977:+176525 Msa1349810:CDS
AGCTGCATCCACAGCATCAT+TGG 0.408165 tig0010977:-176373 None:intergenic
GTCTTTAGAGATGGAAAAGT+TGG 0.408480 tig0010977:-176237 None:intergenic
TTCTCCGGAATCATTTCAAC+TGG 0.414074 tig0010977:-178382 None:intergenic
GAGCAGACAACCAATTTCAT+TGG 0.418328 tig0010977:+178187 Msa1349810:CDS
AGCTGTCTACATATGTTTAC+TGG 0.421708 tig0010977:+177376 Msa1349810:CDS
CAAATTTGTACCAACCTTTG+AGG 0.425468 tig0010977:-176298 None:intergenic
GGAGAAAATGTTTGAGAGAC+AGG 0.428727 tig0010977:+178399 Msa1349810:CDS
AAGGGAATTATGCTATTTCA+AGG 0.430126 tig0010977:+177074 Msa1349810:CDS
CACCGGTAATCTGACTAATC+TGG 0.431896 tig0010977:-177439 None:intergenic
GAGATTGTAATATTATACTT+TGG 0.445378 tig0010977:+178475 Msa1349810:CDS
GTCCAGATTAGTCAGATTAC+CGG 0.449365 tig0010977:+177437 Msa1349810:CDS
GGGACCAGTTGAAATGATTC+CGG 0.449561 tig0010977:+178378 Msa1349810:CDS
CTATCTCCTCAAAAGACAAA+GGG 0.452640 tig0010977:-178513 None:intergenic
TTAAGGCAGAAAGAGGTTGT+AGG 0.464002 tig0010977:+176510 Msa1349810:CDS
GAGAAATTTGATCCGGATAG+AGG 0.468549 tig0010977:+177348 Msa1349810:CDS
GAAAGCTGTTGAAACTATCA+AGG 0.471546 tig0010977:+178536 Msa1349810:CDS
ATGATATGAGGAGGAAGAGA+AGG 0.474045 tig0010977:+176427 Msa1349810:CDS
CAGTTTCTTAAGGCAGAAAG+AGG 0.476375 tig0010977:+176503 Msa1349810:CDS
TAGTAAGAGCAAATCTCATA+TGG 0.488345 tig0010977:+178712 Msa1349810:three_prime_UTR
GAGAGACAGGTAATGAAGGA+AGG 0.490016 tig0010977:+178412 Msa1349810:CDS
ATGTTGAGAACAGTTTCTTA+AGG 0.494620 tig0010977:+176493 Msa1349810:CDS
AAATTTGTACCAACCTTTGA+GGG 0.497738 tig0010977:-176297 None:intergenic
GTTTGAGAGACAGGTAATGA+AGG 0.499603 tig0010977:+178408 Msa1349810:CDS
AGAGACAGGTAATGAAGGAA+GGG 0.501313 tig0010977:+178413 Msa1349810:CDS
GAGAGGATCAGACAGATTCA+TGG 0.502535 tig0010977:+178559 Msa1349810:CDS
TTTAACCAGGAAGGAACCAT+TGG 0.503437 tig0010977:+177309 Msa1349810:intron
TGAGCTTTGTTTATGTCTCA+AGG 0.505679 tig0010977:+176572 Msa1349810:CDS
GAATAGCAATTGATGATATG+AGG 0.512771 tig0010977:+176415 Msa1349810:CDS
ACCTACTATTACACCCTCAA+AGG 0.515388 tig0010977:+176284 Msa1349810:CDS
GACAGCTTACATCCTCTATC+CGG 0.518858 tig0010977:-177360 None:intergenic
TGGAGCAGAGAAATTTGATC+CGG 0.520546 tig0010977:+177341 Msa1349810:CDS
ACCTTTGAGGGTGTAATAGT+AGG 0.520956 tig0010977:-176285 None:intergenic
TAAGGCAGAAAGAGGTTGTA+GGG 0.522827 tig0010977:+176511 Msa1349810:CDS
TATAATGCAGGAGATTATAC+CGG 0.529279 tig0010977:+178357 Msa1349810:intron
CTGTAAAACTTGTTTCTGAA+AGG 0.534187 tig0010977:+178165 Msa1349810:CDS
TCAATCGCAACACGATATCA+AGG 0.537772 tig0010977:+177190 Msa1349810:CDS
CCTATCTCCTCAAAAGACAA+AGG 0.538706 tig0010977:-178514 None:intergenic
GGAATCATTTCAACTGGTCC+CGG 0.544959 tig0010977:-178376 None:intergenic
TCAGCAATTTCATTATATGT+CGG 0.554776 tig0010977:-178119 None:intergenic
TTGTAGGGTCTGTGACATCA+GGG 0.556165 tig0010977:+176526 Msa1349810:CDS
GAATGGTGTGTCTTTAGAGA+TGG 0.559338 tig0010977:-176246 None:intergenic
ATAGGGAGAAAAGTATGGAA+TGG 0.569556 tig0010977:+178043 Msa1349810:intron
TGTTGAAACTATCAAGGGAG+AGG 0.571469 tig0010977:+178542 Msa1349810:CDS
GAGACAGGTAATGAAGGAAG+GGG 0.571902 tig0010977:+178414 Msa1349810:CDS
ACTATTACACCCTCAAAGGT+TGG 0.581517 tig0010977:+176288 Msa1349810:CDS
AGTGATGTAAGAGACATGGT+AGG 0.592073 tig0010977:-176213 None:intergenic
TGCTCCATGAAGAAGTCCAA+TGG 0.596543 tig0010977:-177325 None:intergenic
GGGGCAAAGATAGAAAATGA+AGG 0.606263 tig0010977:+177055 Msa1349810:CDS
AAGCATTCAAGATCTCATCC+AGG 0.606664 tig0010977:+177222 Msa1349810:CDS
TGTCTACATATGTTTACTGG+TGG 0.613609 tig0010977:+177379 Msa1349810:CDS
GTTTACTGGTGGATTAAACA+AGG 0.614224 tig0010977:+177390 Msa1349810:CDS
GTGATGTAAGAGACATGGTA+GGG 0.618561 tig0010977:-176212 None:intergenic
TGGAAGTGATGTAAGAGACA+TGG 0.620101 tig0010977:-176217 None:intergenic
TCAGAGCAACTTAATACTGA+AGG 0.620679 tig0010977:+178226 Msa1349810:CDS
TGGTAGGGAATGTTGAGGTG+TGG 0.623838 tig0010977:-176197 None:intergenic
GCAACACGATATCAAGGCAA+AGG 0.632504 tig0010977:+177196 Msa1349810:CDS
TGGTGATGCATTAGTCATTG+TGG 0.632961 tig0010977:+176326 Msa1349810:CDS
ATAATGCAGGAGATTATACC+GGG 0.633370 tig0010977:+178358 Msa1349810:intron
GGGCAAAGATAGAAAATGAA+GGG 0.633655 tig0010977:+177056 Msa1349810:CDS
AAAGCTGTTGAAACTATCAA+GGG 0.636294 tig0010977:+178537 Msa1349810:CDS
TGCATTAGCCAATGATGCTG+TGG 0.639996 tig0010977:+176365 Msa1349810:CDS
AGTTGTAAAATGACAATCAG+TGG 0.641802 tig0010977:+178738 Msa1349810:three_prime_UTR
GACATATAATGAAATTGCTG+AGG 0.644481 tig0010977:+178121 Msa1349810:CDS
TAGCAATTGATGATATGAGG+AGG 0.652900 tig0010977:+176418 Msa1349810:CDS
AGACATGGTAGGGAATGTTG+AGG 0.653761 tig0010977:-176202 None:intergenic
TCTTAAGACGAAGACTGAGG+CGG 0.681542 tig0010977:+178093 Msa1349810:CDS
TATCTCCTCAAAAGACAAAG+GGG 0.686203 tig0010977:-178512 None:intergenic
AGATTAGCTCGTGATTATCG+CGG 0.696504 tig0010977:+177157 Msa1349810:CDS
ATGTCTTAAGACGAAGACTG+AGG 0.725315 tig0010977:+178090 Msa1349810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATAACATTTTTTG+GGG + tig0010977:177470-177489 Msa1349810:intron 10.0%
!! TAAAAATAATATGAAAAGTG+TGG + tig0010977:176780-176799 Msa1349810:intron 15.0%
!! AAAATTTGCATTATACAAAA+TGG - tig0010977:176960-176979 None:intergenic 15.0%
!!! TATAATGCAAATTTTTTTGT+TGG + tig0010977:176965-176984 Msa1349810:intron 15.0%
!!! TTTTTTATAACATTTTTTGG+GGG + tig0010977:177471-177490 Msa1349810:intron 15.0%
!! AGAAAAAGAAGGAAAAATTT+GGG + tig0010977:176450-176469 Msa1349810:CDS 20.0%
!! AATGGTTAATGAATATAACA+TGG - tig0010977:176865-176884 None:intergenic 20.0%
!! CATTGTTTAGTAGATAAATT+TGG - tig0010977:176920-176939 None:intergenic 20.0%
!!! ATTTGTTAAAGTTTCTCATT+AGG + tig0010977:177274-177293 Msa1349810:intron 20.0%
!! ATAAAAAAAAATTGTCTCAC+CGG - tig0010977:177459-177478 None:intergenic 20.0%
!!! ACTATTTTACAACTATTCTA+AGG + tig0010977:177535-177554 Msa1349810:intron 20.0%
!!! TTTATTTTTCCGGTTTATAA+CGG - tig0010977:177899-177918 None:intergenic 20.0%
!! ATAAACCGGAAAAATAAAAT+TGG + tig0010977:177901-177920 Msa1349810:intron 20.0%
!!! AGTAACCAATTTTATTTTTC+CGG - tig0010977:177909-177928 None:intergenic 20.0%
!! AACTGTTTATTATGAATGTT+TGG + tig0010977:178006-178025 Msa1349810:intron 20.0%
!!! TTGGTTAGTTTGTTATTTAT+AGG + tig0010977:178025-178044 Msa1349810:intron 20.0%
!!! TGGTTAGTTTGTTATTTATA+GGG + tig0010977:178026-178045 Msa1349810:intron 20.0%
!!! TACAATTTCATTCGTATTTT+AGG + tig0010977:178252-178271 Msa1349810:intron 20.0%
!! GAGATTGTAATATTATACTT+TGG + tig0010977:178475-178494 Msa1349810:CDS 20.0%
!! CCTATTCATAAATCTTAATT+AGG - tig0010977:178661-178680 None:intergenic 20.0%
!! CCTAATTAAGATTTATGAAT+AGG + tig0010977:178658-178677 Msa1349810:three_prime_UTR 20.0%
!! GTAAATTTTGTTGAAGTGAA+TGG - tig0010977:176266-176285 None:intergenic 25.0%
! GAGAAAAAGAAGGAAAAATT+TGG + tig0010977:176449-176468 Msa1349810:CDS 25.0%
! GTTCTTAAGATTACAATTCT+AGG - tig0010977:176745-176764 None:intergenic 25.0%
! ATTCATATTTCATCACTAAC+AGG + tig0010977:176999-177018 Msa1349810:intron 25.0%
!!! GCATTTTAATTCATTTAACC+AGG + tig0010977:177296-177315 Msa1349810:intron 25.0%
! TTTAATTCATTTAACCAGGA+AGG + tig0010977:177300-177319 Msa1349810:intron 25.0%
! AACCAATCATATGCTAAATT+TGG + tig0010977:177687-177706 Msa1349810:intron 25.0%
! TATTTATAGGGAGAAAAGTA+TGG + tig0010977:178038-178057 Msa1349810:intron 25.0%
! TCAGCAATTTCATTATATGT+CGG - tig0010977:178122-178141 None:intergenic 25.0%
! TGTTTACTATGATATAATGC+AGG + tig0010977:178345-178364 Msa1349810:intron 25.0%
! ATATTATACTTTGGACTCAA+TGG + tig0010977:178484-178503 Msa1349810:CDS 25.0%
AAATTTGTACCAACCTTTGA+GGG - tig0010977:176300-176319 None:intergenic 30.0%
! GTTGGTACAAATTTGGTTTA+TGG + tig0010977:176306-176325 Msa1349810:CDS 30.0%
! GAATAGCAATTGATGATATG+AGG + tig0010977:176415-176434 Msa1349810:CDS 30.0%
! AAGGAAAAATTTGGGATGTA+TGG + tig0010977:176458-176477 Msa1349810:CDS 30.0%
ATGTTGAGAACAGTTTCTTA+AGG + tig0010977:176493-176512 Msa1349810:CDS 30.0%
! GTTAACGATGTTTAAAATCG+TGG + tig0010977:176802-176821 Msa1349810:intron 30.0%
CCTTAATTATGCTCAATGAA+TGG - tig0010977:176883-176902 None:intergenic 30.0%
CCATTCATTGAGCATAATTA+AGG + tig0010977:176880-176899 Msa1349810:intron 30.0%
TTTGTGTGTTGAATAACAAC+AGG + tig0010977:177030-177049 Msa1349810:intron 30.0%
!! AAGGGAATTATGCTATTTCA+AGG + tig0010977:177074-177093 Msa1349810:CDS 30.0%
!! TGCTATTTCAAGGTTTACTT+TGG + tig0010977:177084-177103 Msa1349810:CDS 30.0%
CACCAAATTTAGCATATGAT+TGG - tig0010977:177692-177711 None:intergenic 30.0%
CGTGAATTGTGAAAACTTAA+CGG - tig0010977:177727-177746 None:intergenic 30.0%
TTGATTAGACGAAGTTAGTT+AGG + tig0010977:177762-177781 Msa1349810:intron 30.0%
! ACTTTTACTGACGTATGTTT+CGG - tig0010977:177832-177851 None:intergenic 30.0%
AGTGATATACCGTTATAAAC+CGG + tig0010977:177887-177906 Msa1349810:intron 30.0%
GACATATAATGAAATTGCTG+AGG + tig0010977:178121-178140 Msa1349810:CDS 30.0%
!! CTGTAAAACTTGTTTCTGAA+AGG + tig0010977:178165-178184 Msa1349810:CDS 30.0%
TATAATGCAGGAGATTATAC+CGG + tig0010977:178357-178376 Msa1349810:intron 30.0%
AAAGCTGTTGAAACTATCAA+GGG + tig0010977:178537-178556 Msa1349810:CDS 30.0%
TAGTAAGAGCAAATCTCATA+TGG + tig0010977:178712-178731 Msa1349810:three_prime_UTR 30.0%
AGTTGTAAAATGACAATCAG+TGG + tig0010977:178738-178757 Msa1349810:three_prime_UTR 30.0%
! GTCTTTAGAGATGGAAAAGT+TGG - tig0010977:176240-176259 None:intergenic 35.0%
CAAATTTGTACCAACCTTTG+AGG - tig0010977:176301-176320 None:intergenic 35.0%
!! CTCAAAGGTTGGTACAAATT+TGG + tig0010977:176299-176318 Msa1349810:CDS 35.0%
! TAGCAATTGATGATATGAGG+AGG + tig0010977:176418-176437 Msa1349810:CDS 35.0%
! GAAAAATTTGGGATGTATGG+TGG + tig0010977:176461-176480 Msa1349810:CDS 35.0%
!!! GTTTTTGAGTTCAACAGAAG+AGG + tig0010977:176548-176567 Msa1349810:CDS 35.0%
!! TGAGCTTTGTTTATGTCTCA+AGG + tig0010977:176572-176591 Msa1349810:CDS 35.0%
!! ATTTTAGTCCCTAAAGTTGC+AGG + tig0010977:176629-176648 Msa1349810:intron 35.0%
TCGTGGTTAATTGTGTTATG+TGG + tig0010977:176819-176838 Msa1349810:intron 35.0%
TGTGTTGAATAACAACAGGA+GGG + tig0010977:177034-177053 Msa1349810:intron 35.0%
GGGCAAAGATAGAAAATGAA+GGG + tig0010977:177056-177075 Msa1349810:CDS 35.0%
AGCTGTCTACATATGTTTAC+TGG + tig0010977:177376-177395 Msa1349810:CDS 35.0%
TGTCTACATATGTTTACTGG+TGG + tig0010977:177379-177398 Msa1349810:CDS 35.0%
!! GTTTACTGGTGGATTAAACA+AGG + tig0010977:177390-177409 Msa1349810:CDS 35.0%
ACAAGGCATGATTAAAGCTT+TGG + tig0010977:177407-177426 Msa1349810:CDS 35.0%
!! GATTTTAACCTTGAGCAACA+TGG + tig0010977:177645-177664 Msa1349810:intron 35.0%
AAAAACAACCATGTTGCTCA+AGG - tig0010977:177656-177675 None:intergenic 35.0%
TAGACGAAGTTAGTTAGGTA+TGG + tig0010977:177767-177786 Msa1349810:intron 35.0%
! CACTATTTTCACAGTCTCTT+TGG + tig0010977:177932-177951 Msa1349810:intron 35.0%
! ATAGGGAGAAAAGTATGGAA+TGG + tig0010977:178043-178062 Msa1349810:intron 35.0%
AATGGTTGCAAAAATTGCAG+AGG + tig0010977:178061-178080 Msa1349810:CDS 35.0%
! ATAGCTCTGTCCAATGAAAT+TGG - tig0010977:178200-178219 None:intergenic 35.0%
TCAGAGCAACTTAATACTGA+AGG + tig0010977:178226-178245 Msa1349810:CDS 35.0%
ATAATGCAGGAGATTATACC+GGG + tig0010977:178358-178377 Msa1349810:intron 35.0%
! TGTCTCTCAAACATTTTCTC+CGG - tig0010977:178400-178419 None:intergenic 35.0%
TATCTCCTCAAAAGACAAAG+GGG - tig0010977:178515-178534 None:intergenic 35.0%
CTATCTCCTCAAAAGACAAA+GGG - tig0010977:178516-178535 None:intergenic 35.0%
GAAAGCTGTTGAAACTATCA+AGG + tig0010977:178536-178555 Msa1349810:CDS 35.0%
GTGATGTAAGAGACATGGTA+GGG - tig0010977:176215-176234 None:intergenic 40.0%
AGTGATGTAAGAGACATGGT+AGG - tig0010977:176216-176235 None:intergenic 40.0%
TGGAAGTGATGTAAGAGACA+TGG - tig0010977:176220-176239 None:intergenic 40.0%
! GAATGGTGTGTCTTTAGAGA+TGG - tig0010977:176249-176268 None:intergenic 40.0%
ACCTACTATTACACCCTCAA+AGG + tig0010977:176284-176303 Msa1349810:CDS 40.0%
! ACCTTTGAGGGTGTAATAGT+AGG - tig0010977:176288-176307 None:intergenic 40.0%
ACTATTACACCCTCAAAGGT+TGG + tig0010977:176288-176307 Msa1349810:CDS 40.0%
! TGGTGATGCATTAGTCATTG+TGG + tig0010977:176326-176345 Msa1349810:CDS 40.0%
ATGATATGAGGAGGAAGAGA+AGG + tig0010977:176427-176446 Msa1349810:CDS 40.0%
GGAAGAGAAGGAGAAAAAGA+AGG + tig0010977:176439-176458 Msa1349810:CDS 40.0%
CAGTTTCTTAAGGCAGAAAG+AGG + tig0010977:176503-176522 Msa1349810:CDS 40.0%
TTAAGGCAGAAAGAGGTTGT+AGG + tig0010977:176510-176529 Msa1349810:CDS 40.0%
TAAGGCAGAAAGAGGTTGTA+GGG + tig0010977:176511-176530 Msa1349810:CDS 40.0%
GACACTCTTAATTCAGTCTC+TGG - tig0010977:176723-176742 None:intergenic 40.0%
GTGTGTTGAATAACAACAGG+AGG + tig0010977:177033-177052 Msa1349810:intron 40.0%
GTGTTGAATAACAACAGGAG+GGG + tig0010977:177035-177054 Msa1349810:intron 40.0%
TGTTGAATAACAACAGGAGG+GGG + tig0010977:177036-177055 Msa1349810:intron 40.0%
GGGGCAAAGATAGAAAATGA+AGG + tig0010977:177055-177074 Msa1349810:CDS 40.0%
! AGATTAGCTCGTGATTATCG+CGG + tig0010977:177157-177176 Msa1349810:CDS 40.0%
TCAATCGCAACACGATATCA+AGG + tig0010977:177190-177209 Msa1349810:CDS 40.0%
AAGCATTCAAGATCTCATCC+AGG + tig0010977:177222-177241 Msa1349810:CDS 40.0%
GAAATGTGTTAGTATGCACC+TGG - tig0010977:177243-177262 None:intergenic 40.0%
TTTAACCAGGAAGGAACCAT+TGG + tig0010977:177309-177328 Msa1349810:intron 40.0%
TGGAGCAGAGAAATTTGATC+CGG + tig0010977:177341-177360 Msa1349810:CDS 40.0%
GAGAAATTTGATCCGGATAG+AGG + tig0010977:177348-177367 Msa1349810:CDS 40.0%
! GTCCAGATTAGTCAGATTAC+CGG + tig0010977:177437-177456 Msa1349810:CDS 40.0%
!!! TATAACATTTTTTGGGGGCG+AGG + tig0010977:177476-177495 Msa1349810:intron 40.0%
!!! ATAACATTTTTTGGGGGCGA+GGG + tig0010977:177477-177496 Msa1349810:intron 40.0%
TTAGTTAGGTATGGTGCATG+CGG + tig0010977:177776-177795 Msa1349810:intron 40.0%
ATGTCTTAAGACGAAGACTG+AGG + tig0010977:178090-178109 Msa1349810:CDS 40.0%
GAGCAGACAACCAATTTCAT+TGG + tig0010977:178187-178206 Msa1349810:CDS 40.0%
TTCTCCGGAATCATTTCAAC+TGG - tig0010977:178385-178404 None:intergenic 40.0%
GGAGAAAATGTTTGAGAGAC+AGG + tig0010977:178399-178418 Msa1349810:CDS 40.0%
GTTTGAGAGACAGGTAATGA+AGG + tig0010977:178408-178427 Msa1349810:CDS 40.0%
AGAGACAGGTAATGAAGGAA+GGG + tig0010977:178413-178432 Msa1349810:CDS 40.0%
CCTATCTCCTCAAAAGACAA+AGG - tig0010977:178517-178536 None:intergenic 40.0%
!! CCTTTGTCTTTTGAGGAGAT+AGG + tig0010977:178514-178533 Msa1349810:CDS 40.0%
TGTTGAAACTATCAAGGGAG+AGG + tig0010977:178542-178561 Msa1349810:CDS 40.0%
! GTTGAGGTGTGGTTTGTGTA+TGG - tig0010977:176189-176208 None:intergenic 45.0%
AGACATGGTAGGGAATGTTG+AGG - tig0010977:176205-176224 None:intergenic 45.0%
TGCATTAGCCAATGATGCTG+TGG + tig0010977:176365-176384 Msa1349810:CDS 45.0%
TTGTAGGGTCTGTGACATCA+GGG + tig0010977:176526-176545 Msa1349810:CDS 45.0%
GACTGATGCCTGCAACTTTA+GGG - tig0010977:176640-176659 None:intergenic 45.0%
CTAAAGTTGCAGGCATCAGT+CGG + tig0010977:176639-176658 Msa1349810:intron 45.0%
GCAACACGATATCAAGGCAA+AGG + tig0010977:177196-177215 Msa1349810:CDS 45.0%
GGAACCATTGGACTTCTTCA+TGG + tig0010977:177321-177340 Msa1349810:CDS 45.0%
TGCTCCATGAAGAAGTCCAA+TGG - tig0010977:177328-177347 None:intergenic 45.0%
GACAGCTTACATCCTCTATC+CGG - tig0010977:177363-177382 None:intergenic 45.0%
CACCGGTAATCTGACTAATC+TGG - tig0010977:177442-177461 None:intergenic 45.0%
!!! TAACATTTTTTGGGGGCGAG+GGG + tig0010977:177478-177497 Msa1349810:intron 45.0%
TATTTGAACCGCGTCTCTTG+AGG + tig0010977:177559-177578 Msa1349810:intron 45.0%
TCTTAAGACGAAGACTGAGG+CGG + tig0010977:178093-178112 Msa1349810:CDS 45.0%
GGAATCATTTCAACTGGTCC+CGG - tig0010977:178379-178398 None:intergenic 45.0%
GGGACCAGTTGAAATGATTC+CGG + tig0010977:178378-178397 Msa1349810:CDS 45.0%
GAGAGACAGGTAATGAAGGA+AGG + tig0010977:178412-178431 Msa1349810:CDS 45.0%
GAGACAGGTAATGAAGGAAG+GGG + tig0010977:178414-178433 Msa1349810:CDS 45.0%
! AGAGACCCCTTTGTCTTTTG+AGG + tig0010977:178507-178526 Msa1349810:CDS 45.0%
GAGAGGATCAGACAGATTCA+TGG + tig0010977:178559-178578 Msa1349810:CDS 45.0%
!! TTTATAAGTTATATTATAAA+AGG + tig0010977:176604-176623 Msa1349810:intron 5.0%
!! TTATAAGTTATATTATAAAA+GGG + tig0010977:176605-176624 Msa1349810:intron 5.0%
!!! TTTTTTTTTATAACATTTTT+TGG + tig0010977:177468-177487 Msa1349810:intron 5.0%
!!! TTTTTTTTATAACATTTTTT+GGG + tig0010977:177469-177488 Msa1349810:intron 5.0%
TGGTAGGGAATGTTGAGGTG+TGG - tig0010977:176200-176219 None:intergenic 50.0%
AGCTGCATCCACAGCATCAT+TGG - tig0010977:176376-176395 None:intergenic 50.0%
GTTGTAGGGTCTGTGACATC+AGG + tig0010977:176525-176544 Msa1349810:CDS 50.0%
CGACTGATGCCTGCAACTTT+AGG - tig0010977:176641-176660 None:intergenic 50.0%
GAAGTCCAATGGTTCCTTCC+TGG - tig0010977:177317-177336 None:intergenic 50.0%
CCTTGTAACCTCAAGAGACG+CGG - tig0010977:177570-177589 None:intergenic 50.0%
GCTAGAAATGCTGCAGCTGC+TGG + tig0010977:176393-176412 Msa1349810:CDS 55.0%
CCGCGTCTCTTGAGGTTACA+AGG + tig0010977:177567-177586 Msa1349810:intron 55.0%
GTTAGGTATGGTGCATGCGG+AGG + tig0010977:177779-177798 Msa1349810:intron 55.0%
Chromosome Type Strat End Strand Name
tig0010977 gene 176165 178791 176165 ID=Msa1349810;Name=Msa1349810
tig0010977 mRNA 176165 178791 176165 ID=Msa1349810-mRNA-1;Parent=Msa1349810;Name=Msa1349810-mRNA-1;_AED=0.17;_eAED=0.17;_QI=54|1|1|1|1|1|5|146|395
tig0010977 exon 176165 176593 176165 ID=Msa1349810-mRNA-1:exon:7082;Parent=Msa1349810-mRNA-1
tig0010977 exon 177052 177243 177052 ID=Msa1349810-mRNA-1:exon:7083;Parent=Msa1349810-mRNA-1
tig0010977 exon 177318 177458 177318 ID=Msa1349810-mRNA-1:exon:7084;Parent=Msa1349810-mRNA-1
tig0010977 exon 178047 178247 178047 ID=Msa1349810-mRNA-1:exon:7085;Parent=Msa1349810-mRNA-1
tig0010977 exon 178367 178791 178367 ID=Msa1349810-mRNA-1:exon:7086;Parent=Msa1349810-mRNA-1
tig0010977 five_prime_UTR 176165 176218 176165 ID=Msa1349810-mRNA-1:five_prime_utr;Parent=Msa1349810-mRNA-1
tig0010977 CDS 176219 176593 176219 ID=Msa1349810-mRNA-1:cds;Parent=Msa1349810-mRNA-1
tig0010977 CDS 177052 177243 177052 ID=Msa1349810-mRNA-1:cds;Parent=Msa1349810-mRNA-1
tig0010977 CDS 177318 177458 177318 ID=Msa1349810-mRNA-1:cds;Parent=Msa1349810-mRNA-1
tig0010977 CDS 178047 178247 178047 ID=Msa1349810-mRNA-1:cds;Parent=Msa1349810-mRNA-1
tig0010977 CDS 178367 178645 178367 ID=Msa1349810-mRNA-1:cds;Parent=Msa1349810-mRNA-1
tig0010977 three_prime_UTR 178646 178791 178646 ID=Msa1349810-mRNA-1:three_prime_utr;Parent=Msa1349810-mRNA-1
Gene Sequence

>Msa1349810

ATGTCTCTTACATCACTTCCAACTTTTCCATCTCTAAAGACACACCATTCACTTCAACAAAATTTACCTACTATTACACCCTCAAAGGTTGGTACAAATTTGGTTTATGGTGATGCATTAGTCATTGTGGCAGCAACAGAAGCAGTTGCATTAGCCAATGATGCTGTGGATGCAGCTAGAAATGCTGCAGCTGCTGGAATAGCAATTGATGATATGAGGAGGAAGAGAAGGAGAAAAAGAAGGAAAAATTTGGGATGTATGGTGGAAGAAAAGAATGTTGAGAACAGTTTCTTAAGGCAGAAAGAGGTTGTAGGGTCTGTGACATCAGGGTTTTTGAGTTCAACAGAAGAGGCTGAGCTTTGTTTATGTCTCAAGGAGGGGGCAAAGATAGAAAATGAAGGGAATTATGCTATTTCAAGGTTTACTTTGGAGAATACAAGTCTAGATAAAGTGTTGATTAATACAAGACAATCAAAAGAAAGATTAGCTCGTGATTATCGCGGTTTAGTTGCATCAATCGCAACACGATATCAAGGCAAAGGTTTAAGCATTCAAGATCTCATCCAGGAAGGAACCATTGGACTTCTTCATGGAGCAGAGAAATTTGATCCGGATAGAGGATGTAAGCTGTCTACATATGTTTACTGGTGGATTAAACAAGGCATGATTAAAGCTTTGGCGAAGAAGTCCAGATTAGTCAGATTACCGGGAGAAAAGTATGGAATGGTTGCAAAAATTGCAGAGGCTAACAATGTCTTAAGACGAAGACTGAGGCGGAAGCCGACATATAATGAAATTGCTGAGGTTCTCAATGTGAATGTTTCAACTGTAAAACTTGTTTCTGAAAGGAGCAGACAACCAATTTCATTGGACAGAGCTATAACTGATCAGAGCAACTTAATACTGAAGGAGATTATACCGGGACCAGTTGAAATGATTCCGGAGAAAATGTTTGAGAGACAGGTAATGAAGGAAGGGGTTGTGAAGCTTCTTAACACACTTAACAAGAGAGAAGAAGAGATTGTAATATTATACTTTGGACTCAATGGAGAGACCCCTTTGTCTTTTGAGGAGATAGGAAAGCTGTTGAAACTATCAAGGGAGAGGATCAGACAGATTCATGGCATTGCATTGTCAAAATTGCAACAAAATTCACTTGTAGATAGTCTAAAGTTTTATGTTGTATAG

Protein sequence

>Msa1349810

MSLTSLPTFPSLKTHHSLQQNLPTITPSKVGTNLVYGDALVIVAATEAVALANDAVDAARNAAAAGIAIDDMRRKRRRKRRKNLGCMVEEKNVENSFLRQKEVVGSVTSGFLSSTEEAELCLCLKEGAKIENEGNYAISRFTLENTSLDKVLINTRQSKERLARDYRGLVASIATRYQGKGLSIQDLIQEGTIGLLHGAEKFDPDRGCKLSTYVYWWIKQGMIKALAKKSRLVRLPGEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRAITDQSNLILKEIIPGPVEMIPEKMFERQVMKEGVVKLLNTLNKREEEIVILYFGLNGETPLSFEEIGKLLKLSRERIRQIHGIALSKLQQNSLVDSLKFYVV*