AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0549330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549330 MtrunA17_Chr4g0033641 88.806 268 2 1 1 268 1 240 2.38e-172 475
Msa0549330 MtrunA17_Chr2g0329511 62.132 272 70 4 1 268 1 243 2.09e-110 318
Msa0549330 MtrunA17_Chr2g0314671 33.987 306 132 10 1 268 1 274 2.11e-42 146
Msa0549330 MtrunA17_Chr1g0155811 58.095 105 43 1 1 104 1 105 1.76e-35 128
Msa0549330 MtrunA17_Chr4g0035651 49.558 113 56 1 1 112 1 113 2.80e-35 126
Msa0549330 MtrunA17_Chr3g0145061 54.717 106 47 1 1 105 1 106 3.10e-35 126
Msa0549330 MtrunA17_Chr3g0142221 52.830 106 48 1 1 104 1 106 2.32e-32 118
Msa0549330 MtrunA17_Chr5g0405151 42.537 134 71 4 1 131 1 131 1.32e-24 97.1
Msa0549330 MtrunA17_Chr7g0220721 43.478 92 43 1 5 96 26 108 1.08e-18 84.7
Msa0549330 MtrunA17_Chr3g0136701 43.750 96 45 1 5 100 6 92 2.21e-18 82.8
Msa0549330 MtrunA17_Chr1g0150471 42.391 92 44 1 5 96 6 88 3.05e-18 82.8
Msa0549330 MtrunA17_Chr4g0072871 39.130 92 47 1 5 96 22 104 1.39e-16 78.6
Msa0549330 MtrunA17_Chr7g0268691 41.837 98 47 2 5 102 20 107 1.44e-15 75.5
Msa0549330 MtrunA17_Chr5g0429341 35.417 96 53 1 1 96 1 87 8.81e-14 70.5
Msa0549330 MtrunA17_Chr3g0120711 38.542 96 49 2 1 96 1 86 1.39e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549330 AT1G06040.1 57.299 274 85 5 1 268 1 248 4.57e-100 293
Msa0549330 AT2G31380.1 54.244 271 88 7 1 268 1 238 1.42e-88 263
Msa0549330 AT1G06040.2 66.071 168 51 3 1 162 1 168 4.21e-70 214
Msa0549330 AT1G78600.1 56.800 125 52 1 1 125 1 123 1.87e-41 144
Msa0549330 AT1G78600.2 56.800 125 52 1 1 125 1 123 3.00e-41 144
Msa0549330 AT4G10240.1 47.619 147 64 4 1 141 1 140 5.61e-36 126
Msa0549330 AT1G75540.1 56.522 115 47 2 1 112 1 115 1.10e-35 130
Msa0549330 AT4G39070.1 45.890 146 76 2 1 145 1 144 2.10e-33 122
Msa0549330 AT2G21320.1 50.000 104 49 2 1 104 1 101 1.03e-24 97.4
Msa0549330 AT4G38960.1 42.424 132 68 3 1 127 1 129 1.55e-24 97.4
Msa0549330 AT4G38960.6 42.424 132 68 3 1 127 1 129 1.55e-24 97.4
Msa0549330 AT5G15850.1 33.143 175 90 4 5 163 12 175 1.30e-19 87.4
Msa0549330 AT2G24790.2 43.478 92 43 1 5 96 8 90 1.87e-18 82.0
Msa0549330 AT2G24790.1 43.478 92 43 1 5 96 8 90 2.34e-18 83.2
Msa0549330 AT3G02380.1 43.478 92 43 1 5 96 16 98 2.07e-17 81.3
Msa0549330 AT5G15840.2 35.200 125 72 1 5 129 20 135 3.37e-17 79.7
Msa0549330 AT5G15840.1 35.200 125 72 1 5 129 20 135 3.79e-17 80.5
Msa0549330 AT5G24930.1 41.667 96 47 1 5 100 6 92 1.01e-16 79.3
Msa0549330 AT4G38960.3 32.000 175 68 4 1 127 1 172 1.19e-16 77.0
Msa0549330 AT2G47890.1 42.353 85 40 1 5 89 13 88 3.45e-14 71.6
Msa0549330 AT2G47890.3 42.353 85 40 1 5 89 13 88 3.53e-14 71.6
Msa0549330 AT2G47890.2 42.353 85 40 1 5 89 13 88 5.90e-14 70.1
Msa0549330 AT1G28050.1 34.653 101 57 1 2 102 6 97 6.58e-13 68.6
Msa0549330 AT1G68190.2 34.375 96 52 2 1 96 39 123 1.51e-12 67.4
Msa0549330 AT1G68190.1 34.375 96 52 2 1 96 10 94 1.74e-12 67.0
Msa0549330 AT1G68190.3 34.375 96 52 2 1 96 10 94 1.74e-12 67.0
Msa0549330 AT2G33500.2 34.000 100 57 1 3 102 10 100 1.86e-12 67.0
Msa0549330 AT2G33500.1 34.000 100 57 1 3 102 10 100 1.96e-12 67.0
Msa0549330 AT3G07650.3 37.647 85 44 1 1 85 1 76 3.24e-12 66.2
Msa0549330 AT3G07650.2 37.647 85 44 1 1 85 1 76 3.24e-12 66.2
Msa0549330 AT3G07650.4 37.647 85 44 1 1 85 1 76 3.24e-12 66.2
Msa0549330 AT3G07650.1 37.647 85 44 1 1 85 1 76 3.24e-12 66.2
Msa0549330 AT5G57660.1 33.333 93 49 2 4 96 21 100 3.46e-11 63.2
Msa0549330 AT5G48250.1 32.653 98 55 2 1 96 1 89 4.28e-11 62.8

Find 90 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGTAGCTGGTAGTCTTTC+TGG 0.109250 4_1:-44427087 Msa0549330:CDS
TTGGGCTGTTGATGATTTCT+TGG 0.216145 4_1:-44426905 Msa0549330:CDS
TGCTCTATGTTCCTTAAGTA+TGG 0.249200 4_1:+44425686 None:intergenic
TGTTATCTTGAAGACCATTT+TGG 0.263913 4_1:-44425767 Msa0549330:three_prime_UTR
GATGATTTCTTGGAATTAAC+TGG 0.278064 4_1:-44426895 Msa0549330:CDS
TATAATATTCCAAACCCTTT+TGG 0.279477 4_1:+44428316 None:intergenic
TGGCTTTGTGGTGTTGGCTT+GGG 0.286794 4_1:-44426648 Msa0549330:CDS
CAGAAGCAATCCATGGAGTT+TGG 0.289917 4_1:-44426289 Msa0549330:CDS
TTGGCTTTGTGGTGTTGGCT+TGG 0.298679 4_1:-44426649 Msa0549330:CDS
ACTTGGCAGATATCACATTT+AGG 0.310599 4_1:+44428072 None:intergenic
GTAAGACATATAAGATTTAG+AGG 0.311347 4_1:+44426144 None:intergenic
TCACACCCTCCATGCAATAT+TGG 0.314951 4_1:-44425819 Msa0549330:three_prime_UTR
ACACTGCCAGCATGCATTAC+TGG 0.340744 4_1:+44426181 None:intergenic
TACCGGTATCCGTGTGGCTT+TGG 0.344898 4_1:-44427043 Msa0549330:CDS
ACGGGAACTTGTTGCGTGTC+TGG 0.356267 4_1:+44426970 None:intergenic
AAAATAGTCAAAAGTATTGA+TGG 0.360457 4_1:+44428351 None:intergenic
TTGGGTTGGCTTTGTGGTGT+TGG 0.360864 4_1:-44426654 Msa0549330:CDS
AGCGTAGAATTATACCTTAA+AGG 0.365074 4_1:-44425893 Msa0549330:three_prime_UTR
CACACCCTCCATGCAATATT+GGG 0.366816 4_1:-44425818 Msa0549330:three_prime_UTR
TAAAGTTGTCTTACCTTGTC+TGG 0.367338 4_1:+44426862 None:intergenic
ACCAACTTGGGTTGGCTTTG+TGG 0.367775 4_1:-44426660 Msa0549330:CDS
TGCCTAGTTTCGCATCCTCT+TGG 0.378192 4_1:-44426924 Msa0549330:CDS
GCCTAGTTTCGCATCCTCTT+GGG 0.385410 4_1:-44426923 Msa0549330:CDS
CTCATCCATCTACAGATTCA+TGG 0.393449 4_1:+44426021 None:intergenic
CAAAACTGCTATAAGTACTA+TGG 0.400726 4_1:-44425665 Msa0549330:three_prime_UTR
AGACTACCAGCTACATGAAT+TGG 0.402532 4_1:+44427093 None:intergenic
AAGAGGTGTTGGATTTGATA+AGG 0.412876 4_1:-44428262 Msa0549330:five_prime_UTR
CTAAACCTTCCTGAGGAAAC+TGG 0.421815 4_1:+44426227 None:intergenic
GTGTAGCAATTATACCAAAA+TGG 0.430154 4_1:+44425753 None:intergenic
ATTAACTTGATCCATACTTA+AGG 0.430475 4_1:-44425697 Msa0549330:three_prime_UTR
TAAGATTTAGAGGCTTTGTA+AGG 0.437114 4_1:+44426154 None:intergenic
CGATGATGATGAGCACTTCA+TGG 0.441777 4_1:-44426089 Msa0549330:CDS
TGAGTGAATGGAATATGTTT+TGG 0.446035 4_1:+44428425 None:intergenic
CATGTGCTTTAGCCGAGATC+TGG 0.447542 4_1:+44426064 None:intergenic
TGGAGTTTGGAGAGCTTGAA+TGG 0.451045 4_1:-44426276 Msa0549330:CDS
ATCTGTGAAGGAAACCAACT+TGG 0.459264 4_1:-44426673 Msa0549330:intron
TGTTGCGTGTCTGGATTAGA+TGG 0.466529 4_1:+44426979 None:intergenic
TGGGCAGTTTATGTTGTGTA+TGG 0.467883 4_1:-44425799 Msa0549330:three_prime_UTR
CTGTTCCATGAATCTGTAGA+TGG 0.473976 4_1:-44426026 Msa0549330:three_prime_UTR
AGCCAAAGCCACACGGATAC+CGG 0.489165 4_1:+44427041 None:intergenic
AAAGGTATTAAAACTTTGCA+TGG 0.491551 4_1:-44425875 Msa0549330:three_prime_UTR
GCACAACAAATCACCGTAGC+AGG 0.495596 4_1:+44428201 None:intergenic
ACAGATTCATGGAACAGAAC+AGG 0.495779 4_1:+44426032 None:intergenic
CTGGATTAGATGGTTCAACT+TGG 0.497438 4_1:+44426989 None:intergenic
TTTCAATGACCAGTTTCCTC+AGG 0.500064 4_1:-44426236 Msa0549330:CDS
CTGAGGAGGAGAAACTTTGA+CGG 0.504586 4_1:+44426951 None:intergenic
CACTTCATGGTGCCAGATCT+CGG 0.507917 4_1:-44426076 Msa0549330:CDS
TACCGGTAGCAAGGAAGCGC+TGG 0.512715 4_1:+44427058 None:intergenic
CTTGAATGGCTATCGGATGC+AGG 0.516958 4_1:-44426262 Msa0549330:CDS
TGAAGGAAACCAACTTGGGT+TGG 0.518535 4_1:-44426668 Msa0549330:intron
TATTGGAAGAGAAGAGGTGT+TGG 0.520050 4_1:-44428273 Msa0549330:five_prime_UTR
TCAACACAAAATATGAAAGC+TGG 0.522233 4_1:+44427150 None:intergenic
GCCCAAGAGGATGCGAAACT+AGG 0.529539 4_1:+44426922 None:intergenic
TCATGTCGGACTTCAATCCT+AGG 0.531676 4_1:+44426115 None:intergenic
CTTCGAGTGTGCTCCTCTCA+AGG 0.533646 4_1:-44426623 Msa0549330:CDS
AGACCGAGCACTGTTCTGTA+AGG 0.533969 4_1:-44427127 Msa0549330:CDS
AGTGTGTGAATGAGAAGATA+AGG 0.538140 4_1:+44428466 None:intergenic
AGCTTGCTAGCAAGCATCAA+AGG 0.550543 4_1:-44428125 Msa0549330:CDS
TTCAAGCTCTCCAAACTCCA+TGG 0.552963 4_1:+44426279 None:intergenic
CACCAGCGCTTCCTTGCTAC+CGG 0.553385 4_1:-44427060 Msa0549330:CDS
ACCACAAAGCCAACCCAAGT+TGG 0.555335 4_1:+44426659 None:intergenic
TGGAGAGCTTGAATGGCTAT+CGG 0.557707 4_1:-44426269 Msa0549330:CDS
AAACTAGGCACTTGCTGAGG+AGG 0.565089 4_1:+44426937 None:intergenic
TGGTATAATTGCTACACTGA+GGG 0.566135 4_1:-44425747 Msa0549330:three_prime_UTR
CAACTTCCAGTAATGCATGC+TGG 0.570734 4_1:-44426187 Msa0549330:CDS
GATCATTGTTTACAATCTAG+AGG 0.572052 4_1:-44425845 Msa0549330:three_prime_UTR
ATCGAACATGTGACCTTGAG+AGG 0.573927 4_1:+44426610 None:intergenic
TGAGGAGGAGAAACTTTGAC+GGG 0.575513 4_1:+44426952 None:intergenic
AATGACCAGTTTCCTCAGGA+AGG 0.575639 4_1:-44426232 Msa0549330:CDS
TAGTCAAAAGTATTGATGGA+TGG 0.582591 4_1:+44428355 None:intergenic
CATCATCATCGTCTTCATGT+CGG 0.589449 4_1:+44426101 None:intergenic
ACTGCCCAATATTGCATGGA+GGG 0.591613 4_1:+44425814 None:intergenic
GTCACATGTTCGATTCTCCC+CGG 0.597142 4_1:-44426601 Msa0549330:intron
CGGTAGCAAGGAAGCGCTGG+TGG 0.597801 4_1:+44427061 None:intergenic
GAAATCATCAACAGCCCAAG+AGG 0.601713 4_1:+44426909 None:intergenic
ATGGAACAGAACAGGCGAGA+TGG 0.604332 4_1:+44426040 None:intergenic
GATGAACCAATTCATGTAGC+TGG 0.610215 4_1:-44427099 Msa0549330:CDS
TGGCTTTGATTCACCAGACA+AGG 0.610663 4_1:-44426875 Msa0549330:intron
ATAAACTGCCCAATATTGCA+TGG 0.610872 4_1:+44425810 None:intergenic
GCATGCATTACTGGAAGTTG+CGG 0.617995 4_1:+44426190 None:intergenic
CCACACGGATACCGGTAGCA+AGG 0.621121 4_1:+44427049 None:intergenic
AACTAGAAGCCAAAGCCACA+CGG 0.621527 4_1:+44427034 None:intergenic
AGTCCTTACAGAACAGTGCT+CGG 0.631276 4_1:+44427124 None:intergenic
CCTTGCTACCGGTATCCGTG+TGG 0.645262 4_1:-44427049 Msa0549330:CDS
GCGAAACTAGGCACTTGCTG+AGG 0.649769 4_1:+44426934 None:intergenic
TTGGTATAATTGCTACACTG+AGG 0.658332 4_1:-44425748 Msa0549330:three_prime_UTR
AACTGCCCAATATTGCATGG+AGG 0.680248 4_1:+44425813 None:intergenic
CTTGAGAGGAGCACACTCGA+AGG 0.693421 4_1:+44426624 None:intergenic
TCTGTGAAGGAAACCAACTT+GGG 0.719623 4_1:-44426672 Msa0549330:intron
GCTGCAGCTAAACCTTCCTG+AGG 0.726877 4_1:+44426220 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTAAAATAATATTTT+TGG - chr4_1:44425974-44425993 Msa0549330:three_prime_UTR 0.0%
!! AATTAAAAAAAAGACTTTAA+AGG + chr4_1:44425961-44425980 None:intergenic 10.0%
!!! AATAATATATTGAATTTTGT+AGG - chr4_1:44426018-44426037 Msa0549330:three_prime_UTR 10.0%
!! CAAATATTAAAACAATATAA+AGG + chr4_1:44427571-44427590 None:intergenic 10.0%
!!! CTTTATATTGTTTTAATATT+TGG - chr4_1:44427569-44427588 Msa0549330:intron 10.0%
!! GATAAACAGTTTAAAAATAT+TGG - chr4_1:44425613-44425632 Msa0549330:three_prime_UTR 15.0%
!! AATAAATTATTATGAGAGTT+TGG - chr4_1:44426105-44426124 Msa0549330:CDS 15.0%
!! CTTCTTATTCAAAATAAATA+GGG + chr4_1:44426481-44426500 None:intergenic 15.0%
!! TACTATTAACATAATCATAA+AGG + chr4_1:44427529-44427548 None:intergenic 15.0%
!! ATATTAAAACAATATAAAGG+AGG + chr4_1:44427568-44427587 None:intergenic 15.0%
!!! AAAATAGTCAAAAGTATTGA+TGG + chr4_1:44425555-44425574 None:intergenic 20.0%
!!! TCAATACTTTTGACTATTTT+TGG - chr4_1:44425555-44425574 Msa0549330:three_prime_UTR 20.0%
!!! ATTTTGTAGGATTTAAGATT+AGG - chr4_1:44426031-44426050 Msa0549330:three_prime_UTR 20.0%
!!! TTTTGTAGGATTTAAGATTA+GGG - chr4_1:44426032-44426051 Msa0549330:three_prime_UTR 20.0%
!! ATGTGCAAAAAAAATAACAT+GGG + chr4_1:44426159-44426178 None:intergenic 20.0%
!! GCTTCTTATTCAAAATAAAT+AGG + chr4_1:44426482-44426501 None:intergenic 20.0%
!!! TCTGTTTATATGAATTTTTG+AGG - chr4_1:44427442-44427461 Msa0549330:intron 20.0%
!!! AAAAATGTCATTTTTGTTGA+CGG + chr4_1:44428347-44428366 None:intergenic 20.0%
!! TCAAAAAAATCATTGTAAGT+TGG - chr4_1:44428413-44428432 Msa0549330:five_prime_UTR 20.0%
!! TATAATATTCCAAACCCTTT+TGG + chr4_1:44425590-44425609 None:intergenic 25.0%
! TAAAAATATTGGAAGAGAAG+AGG - chr4_1:44425624-44425643 Msa0549330:three_prime_UTR 25.0%
! CATGTGCAAAAAAAATAACA+TGG + chr4_1:44426160-44426179 None:intergenic 25.0%
! AAAATCTTCATGAATCTACA+TGG + chr4_1:44426202-44426221 None:intergenic 25.0%
! ATGCTATAATTGTCTTTGAT+TGG - chr4_1:44426265-44426284 Msa0549330:CDS 25.0%
! ATAATTGTCTTTGATTGGAT+TGG - chr4_1:44426270-44426289 Msa0549330:CDS 25.0%
!!! AAGACATTGATTTCTATCTA+TGG + chr4_1:44426326-44426345 None:intergenic 25.0%
! ATAGATAGAAATCAATGTCT+TGG - chr4_1:44426325-44426344 Msa0549330:intron 25.0%
! AATCAATGTCTTGGAATAAA+TGG - chr4_1:44426334-44426353 Msa0549330:intron 25.0%
!!! ATTTTGAATAAGAAGCATCT+AGG - chr4_1:44426486-44426505 Msa0549330:intron 25.0%
! ATCCTATAGTTATAAGATGA+AGG + chr4_1:44426730-44426749 None:intergenic 25.0%
! TGAGAGATTATGATTTATGA+TGG - chr4_1:44427119-44427138 Msa0549330:CDS 25.0%
!! AGATTATGATTTATGATGGA+GGG - chr4_1:44427123-44427142 Msa0549330:CDS 25.0%
! CATTATTTCATTAAACGAAC+TGG + chr4_1:44427370-44427389 None:intergenic 25.0%
! TCATATAAACAGAAACCAAA+CGG + chr4_1:44427435-44427454 None:intergenic 25.0%
! GTAAGACATATAAGATTTAG+AGG + chr4_1:44427762-44427781 None:intergenic 25.0%
!!! GCAAAGTTTTAATACCTTTA+AGG + chr4_1:44428027-44428046 None:intergenic 25.0%
!!! AAAGGTATTAAAACTTTGCA+TGG - chr4_1:44428028-44428047 Msa0549330:intron 25.0%
!! ATTAACTTGATCCATACTTA+AGG - chr4_1:44428206-44428225 Msa0549330:CDS 25.0%
! TGAGTGAATGGAATATGTTT+TGG + chr4_1:44425481-44425500 None:intergenic 30.0%
! ATTGAAAAAGTGTGAGTGAA+TGG + chr4_1:44425493-44425512 None:intergenic 30.0%
!! TAGTCAAAAGTATTGATGGA+TGG + chr4_1:44425551-44425570 None:intergenic 30.0%
!!! TTTTGGCTTGAAAAACCAAA+AGG - chr4_1:44425572-44425591 Msa0549330:three_prime_UTR 30.0%
!! TTTGGCTTGAAAAACCAAAA+GGG - chr4_1:44425573-44425592 Msa0549330:three_prime_UTR 30.0%
AGCAAAAACAAAACCATACT+TGG + chr4_1:44425851-44425870 None:intergenic 30.0%
!! ACACTTTTGATCGATTCTTT+AGG + chr4_1:44426451-44426470 None:intergenic 30.0%
AATGCTAAATCTGATGTACT+GGG + chr4_1:44426528-44426547 None:intergenic 30.0%
AAATGCTAAATCTGATGTAC+TGG + chr4_1:44426529-44426548 None:intergenic 30.0%
AAAATTGCAATATTCGGATC+GGG + chr4_1:44426619-44426638 None:intergenic 30.0%
GAAAATTGCAATATTCGGAT+CGG + chr4_1:44426620-44426639 None:intergenic 30.0%
CGAAACACAATTCAAAATTC+CGG + chr4_1:44426644-44426663 None:intergenic 30.0%
! TTTTGAATTGTGTTTCGAAC+TGG - chr4_1:44426647-44426666 Msa0549330:CDS 30.0%
!!! ATGGATGATTTTACTGACTT+TGG - chr4_1:44426704-44426723 Msa0549330:intron 30.0%
TCAACACAAAATATGAAAGC+TGG + chr4_1:44426756-44426775 None:intergenic 30.0%
GATGATTTCTTGGAATTAAC+TGG - chr4_1:44427008-44427027 Msa0549330:CDS 30.0%
GAGATTATGATTTATGATGG+AGG - chr4_1:44427122-44427141 Msa0549330:CDS 30.0%
! TGTTGATAAATGATCTGTGA+AGG - chr4_1:44427218-44427237 Msa0549330:intron 30.0%
! TTGCTTCTGAAAAGAAAGAA+AGG + chr4_1:44427603-44427622 None:intergenic 30.0%
! TAAGATTTAGAGGCTTTGTA+AGG + chr4_1:44427752-44427771 None:intergenic 30.0%
ATATGTCTTACAAAAAGCCT+AGG - chr4_1:44427771-44427790 Msa0549330:intron 30.0%
AGCGTAGAATTATACCTTAA+AGG - chr4_1:44428010-44428029 Msa0549330:intron 30.0%
GATCATTGTTTACAATCTAG+AGG - chr4_1:44428058-44428077 Msa0549330:intron 30.0%
! TGTTATCTTGAAGACCATTT+TGG - chr4_1:44428136-44428155 Msa0549330:CDS 30.0%
GTGTAGCAATTATACCAAAA+TGG + chr4_1:44428153-44428172 None:intergenic 30.0%
CAAAACTGCTATAAGTACTA+TGG - chr4_1:44428238-44428257 Msa0549330:exon 30.0%
AGTGTGTGAATGAGAAGATA+AGG + chr4_1:44425440-44425459 None:intergenic 35.0%
CTTGAAAAACCAAAAGGGTT+TGG - chr4_1:44425578-44425597 Msa0549330:three_prime_UTR 35.0%
!! AAGAGGTGTTGGATTTGATA+AGG - chr4_1:44425641-44425660 Msa0549330:three_prime_UTR 35.0%
ACTTGGCAGATATCACATTT+AGG + chr4_1:44425834-44425853 None:intergenic 35.0%
AATGTGATATCTGCCAAGTA+TGG - chr4_1:44425835-44425854 Msa0549330:three_prime_UTR 35.0%
CCGGTGAAAATTGCAATATT+CGG + chr4_1:44426625-44426644 None:intergenic 35.0%
! CCGAATATTGCAATTTTCAC+CGG - chr4_1:44426622-44426641 Msa0549330:CDS 35.0%
! GTTGAAGTATTTGCTGAACA+TGG - chr4_1:44426685-44426704 Msa0549330:intron 35.0%
GGCCTTCATCTTATAACTAT+AGG - chr4_1:44426725-44426744 Msa0549330:intron 35.0%
!! TTGGCTTTTCTCATTGTCTT+TGG + chr4_1:44426898-44426917 None:intergenic 35.0%
TAAAGTTGTCTTACCTTGTC+TGG + chr4_1:44427044-44427063 None:intergenic 35.0%
! TTCTTTTCAGAAGCAATCCA+TGG - chr4_1:44427607-44427626 Msa0549330:intron 35.0%
ATAAACTGCCCAATATTGCA+TGG + chr4_1:44428096-44428115 None:intergenic 35.0%
TTGGTATAATTGCTACACTG+AGG - chr4_1:44428155-44428174 Msa0549330:CDS 35.0%
TGGTATAATTGCTACACTGA+GGG - chr4_1:44428156-44428175 Msa0549330:CDS 35.0%
TGCTCTATGTTCCTTAAGTA+TGG + chr4_1:44428220-44428239 None:intergenic 35.0%
! TTCTTTTGTCATGCGATACA+TGG + chr4_1:44428477-44428496 None:intergenic 35.0%
! CACACTCGCTATATTTTGCA+TGG - chr4_1:44425454-44425473 Msa0549330:three_prime_UTR 40.0%
! TATTGGAAGAGAAGAGGTGT+TGG - chr4_1:44425630-44425649 Msa0549330:three_prime_UTR 40.0%
GATGATGTTGTGTTTGTAGC+AGG - chr4_1:44426356-44426375 Msa0549330:intron 40.0%
!! TAAGGGTTAGTCTAGTGGTA+TGG + chr4_1:44426410-44426429 None:intergenic 40.0%
ATACCACTAGACTAACCCTT+AGG - chr4_1:44426409-44426428 Msa0549330:intron 40.0%
TACCACTAGACTAACCCTTA+GGG - chr4_1:44426410-44426429 Msa0549330:intron 40.0%
!! GATTCTCTAAAGCCATTGCA+CGG + chr4_1:44426597-44426616 None:intergenic 40.0%
GATGAACCAATTCATGTAGC+TGG - chr4_1:44426804-44426823 Msa0549330:intron 40.0%
AGACTACCAGCTACATGAAT+TGG + chr4_1:44426813-44426832 None:intergenic 40.0%
! CTGGATTAGATGGTTCAACT+TGG + chr4_1:44426917-44426936 None:intergenic 40.0%
!! TTGGGCTGTTGATGATTTCT+TGG - chr4_1:44426998-44427017 Msa0549330:CDS 40.0%
ATCTGTGAAGGAAACCAACT+TGG - chr4_1:44427230-44427249 Msa0549330:intron 40.0%
TCTGTGAAGGAAACCAACTT+GGG - chr4_1:44427231-44427250 Msa0549330:intron 40.0%
CCAAACTAACCCACCAAAAT+GGG + chr4_1:44427330-44427349 None:intergenic 40.0%
ACTTCGAACCATATTTGCAC+AGG - chr4_1:44427477-44427496 Msa0549330:intron 40.0%
AACCATATTTGCACAGGCAA+TGG - chr4_1:44427483-44427502 Msa0549330:intron 40.0%
TACCATTGCCTGTGCAAATA+TGG + chr4_1:44427488-44427507 None:intergenic 40.0%
TATTTGCACAGGCAATGGTA+AGG - chr4_1:44427488-44427507 Msa0549330:intron 40.0%
TTTCAATGACCAGTTTCCTC+AGG - chr4_1:44427667-44427686 Msa0549330:intron 40.0%
CATCATCATCGTCTTCATGT+CGG + chr4_1:44427805-44427824 None:intergenic 40.0%
ACAGATTCATGGAACAGAAC+AGG + chr4_1:44427874-44427893 None:intergenic 40.0%
CTGTTCCATGAATCTGTAGA+TGG - chr4_1:44427877-44427896 Msa0549330:intron 40.0%
CTCATCCATCTACAGATTCA+TGG + chr4_1:44427885-44427904 None:intergenic 40.0%
TGGGCAGTTTATGTTGTGTA+TGG - chr4_1:44428104-44428123 Msa0549330:CDS 40.0%
GTGTGAAAAAGCTCCTGCTA+CGG - chr4_1:44425689-44425708 Msa0549330:three_prime_UTR 45.0%
!! AGCTTGCTAGCAAGCATCAA+AGG - chr4_1:44425778-44425797 Msa0549330:three_prime_UTR 45.0%
CAGGAATCGAACCCTTTCTT+CGG - chr4_1:44426375-44426394 Msa0549330:intron 45.0%
ATGTCCTATTCGTGCCCTAA+GGG + chr4_1:44426427-44426446 None:intergenic 45.0%
AAAGCCATTGCACGGTGTAA+CGG + chr4_1:44426589-44426608 None:intergenic 45.0%
AGTCCTTACAGAACAGTGCT+CGG + chr4_1:44426782-44426801 None:intergenic 45.0%
CATGTAGCTGGTAGTCTTTC+TGG - chr4_1:44426816-44426835 Msa0549330:intron 45.0%
AACTAGAAGCCAAAGCCACA+CGG + chr4_1:44426872-44426891 None:intergenic 45.0%
! TGTTGCGTGTCTGGATTAGA+TGG + chr4_1:44426927-44426946 None:intergenic 45.0%
TGAGGAGGAGAAACTTTGAC+GGG + chr4_1:44426954-44426973 None:intergenic 45.0%
CTGAGGAGGAGAAACTTTGA+CGG + chr4_1:44426955-44426974 None:intergenic 45.0%
GAAATCATCAACAGCCCAAG+AGG + chr4_1:44426997-44427016 None:intergenic 45.0%
!! TGGCTTTGATTCACCAGACA+AGG - chr4_1:44427028-44427047 Msa0549330:CDS 45.0%
TGAAGGAAACCAACTTGGGT+TGG - chr4_1:44427235-44427254 Msa0549330:intron 45.0%
ATCGAACATGTGACCTTGAG+AGG + chr4_1:44427296-44427315 None:intergenic 45.0%
TAACCCACCAAAATGGGTAC+CGG + chr4_1:44427324-44427343 None:intergenic 45.0%
!!! CCCATTTTGGTGGGTTAGTT+TGG - chr4_1:44427327-44427346 Msa0549330:intron 45.0%
GCCAAACTAACCCACCAAAA+TGG + chr4_1:44427331-44427350 None:intergenic 45.0%
!! GGGTTAGTTTGGCTCTATGA+AGG - chr4_1:44427338-44427357 Msa0549330:intron 45.0%
TACACACTAACTCTGCCGTT+TGG - chr4_1:44427417-44427436 Msa0549330:intron 45.0%
CAGAAGCAATCCATGGAGTT+TGG - chr4_1:44427614-44427633 Msa0549330:intron 45.0%
TTCAAGCTCTCCAAACTCCA+TGG + chr4_1:44427627-44427646 None:intergenic 45.0%
TGGAGTTTGGAGAGCTTGAA+TGG - chr4_1:44427627-44427646 Msa0549330:intron 45.0%
TGGAGAGCTTGAATGGCTAT+CGG - chr4_1:44427634-44427653 Msa0549330:intron 45.0%
AATGACCAGTTTCCTCAGGA+AGG - chr4_1:44427671-44427690 Msa0549330:intron 45.0%
CTAAACCTTCCTGAGGAAAC+TGG + chr4_1:44427679-44427698 None:intergenic 45.0%
GCATGCATTACTGGAAGTTG+CGG + chr4_1:44427716-44427735 None:intergenic 45.0%
CAACTTCCAGTAATGCATGC+TGG - chr4_1:44427716-44427735 Msa0549330:intron 45.0%
TCATGTCGGACTTCAATCCT+AGG + chr4_1:44427791-44427810 None:intergenic 45.0%
! CGATGATGATGAGCACTTCA+TGG - chr4_1:44427814-44427833 Msa0549330:intron 45.0%
TCACACCCTCCATGCAATAT+TGG - chr4_1:44428084-44428103 Msa0549330:CDS 45.0%
CACACCCTCCATGCAATATT+GGG - chr4_1:44428085-44428104 Msa0549330:CDS 45.0%
ACTGCCCAATATTGCATGGA+GGG + chr4_1:44428092-44428111 None:intergenic 45.0%
AACTGCCCAATATTGCATGG+AGG + chr4_1:44428093-44428112 None:intergenic 45.0%
GCACAACAAATCACCGTAGC+AGG + chr4_1:44425705-44425724 None:intergenic 50.0%
GGACTGAGACACCGAAGAAA+GGG + chr4_1:44426389-44426408 None:intergenic 50.0%
TGGACTGAGACACCGAAGAA+AGG + chr4_1:44426390-44426409 None:intergenic 50.0%
!! TGCCCTAAGGGTTAGTCTAG+TGG + chr4_1:44426415-44426434 None:intergenic 50.0%
CTAACCCTTAGGGCACGAAT+AGG - chr4_1:44426420-44426439 Msa0549330:intron 50.0%
CATGTCCTATTCGTGCCCTA+AGG + chr4_1:44426428-44426447 None:intergenic 50.0%
AAGCCATTGCACGGTGTAAC+GGG + chr4_1:44426588-44426607 None:intergenic 50.0%
! AGACCGAGCACTGTTCTGTA+AGG - chr4_1:44426776-44426795 Msa0549330:intron 50.0%
! AAACTAGGCACTTGCTGAGG+AGG + chr4_1:44426969-44426988 None:intergenic 50.0%
TGCCTAGTTTCGCATCCTCT+TGG - chr4_1:44426979-44426998 Msa0549330:CDS 50.0%
GCCTAGTTTCGCATCCTCTT+GGG - chr4_1:44426980-44426999 Msa0549330:CDS 50.0%
!! ACCAACTTGGGTTGGCTTTG+TGG - chr4_1:44427243-44427262 Msa0549330:intron 50.0%
ACCACAAAGCCAACCCAAGT+TGG + chr4_1:44427247-44427266 None:intergenic 50.0%
!! TTGGGTTGGCTTTGTGGTGT+TGG - chr4_1:44427249-44427268 Msa0549330:intron 50.0%
!! TTGGCTTTGTGGTGTTGGCT+TGG - chr4_1:44427254-44427273 Msa0549330:intron 50.0%
!! TGGCTTTGTGGTGTTGGCTT+GGG - chr4_1:44427255-44427274 Msa0549330:intron 50.0%
GTCACATGTTCGATTCTCCC+CGG - chr4_1:44427302-44427321 Msa0549330:intron 50.0%
! ATTCTCCCCGGTACCCATTT+TGG - chr4_1:44427314-44427333 Msa0549330:intron 50.0%
AACCCACCAAAATGGGTACC+GGG + chr4_1:44427323-44427342 None:intergenic 50.0%
CTTGAATGGCTATCGGATGC+AGG - chr4_1:44427641-44427660 Msa0549330:intron 50.0%
ACACTGCCAGCATGCATTAC+TGG + chr4_1:44427725-44427744 None:intergenic 50.0%
! CACTTCATGGTGCCAGATCT+CGG - chr4_1:44427827-44427846 Msa0549330:intron 50.0%
CATGTGCTTTAGCCGAGATC+TGG + chr4_1:44427842-44427861 None:intergenic 50.0%
ATGGAACAGAACAGGCGAGA+TGG + chr4_1:44427866-44427885 None:intergenic 50.0%
!! TTGCACGGTGTAACGGGTTG+TGG + chr4_1:44426582-44426601 None:intergenic 55.0%
CAACCCGTTACACCGTGCAA+TGG - chr4_1:44426582-44426601 Msa0549330:intron 55.0%
TACCGGTATCCGTGTGGCTT+TGG - chr4_1:44426860-44426879 Msa0549330:intron 55.0%
AGCCAAAGCCACACGGATAC+CGG + chr4_1:44426865-44426884 None:intergenic 55.0%
!! ACGGGAACTTGTTGCGTGTC+TGG + chr4_1:44426936-44426955 None:intergenic 55.0%
! GCGAAACTAGGCACTTGCTG+AGG + chr4_1:44426972-44426991 None:intergenic 55.0%
GCCCAAGAGGATGCGAAACT+AGG + chr4_1:44426984-44427003 None:intergenic 55.0%
! CTTGAGAGGAGCACACTCGA+AGG + chr4_1:44427282-44427301 None:intergenic 55.0%
CTTCGAGTGTGCTCCTCTCA+AGG - chr4_1:44427280-44427299 Msa0549330:intron 55.0%
!! TCCCCGGTACCCATTTTGGT+GGG - chr4_1:44427318-44427337 Msa0549330:intron 55.0%
! ACCCACCAAAATGGGTACCG+GGG + chr4_1:44427322-44427341 None:intergenic 55.0%
GCTGCAGCTAAACCTTCCTG+AGG + chr4_1:44427686-44427705 None:intergenic 55.0%
CACCAGCGCTTCCTTGCTAC+CGG - chr4_1:44426843-44426862 Msa0549330:intron 60.0%
! TACCGGTAGCAAGGAAGCGC+TGG + chr4_1:44426848-44426867 None:intergenic 60.0%
CCACACGGATACCGGTAGCA+AGG + chr4_1:44426857-44426876 None:intergenic 60.0%
CCTTGCTACCGGTATCCGTG+TGG - chr4_1:44426854-44426873 Msa0549330:intron 60.0%
! CTCCCCGGTACCCATTTTGG+TGG - chr4_1:44427317-44427336 Msa0549330:intron 60.0%
!! CGGTAGCAAGGAAGCGCTGG+TGG + chr4_1:44426845-44426864 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 44425428 44428497 44425428 ID=Msa0549330;Name=Msa0549330
chr4_1 mRNA 44425428 44428497 44425428 ID=Msa0549330-mRNA-1;Parent=Msa0549330;Name=Msa0549330-mRNA-1;_AED=0.11;_eAED=0.11;_QI=241|0.66|0.75|1|1|1|4|644|268
chr4_1 exon 44425428 44426308 44425428 ID=Msa0549330-mRNA-1:exon:11554;Parent=Msa0549330-mRNA-1
chr4_1 exon 44426602 44426685 44426602 ID=Msa0549330-mRNA-1:exon:11553;Parent=Msa0549330-mRNA-1
chr4_1 exon 44426876 44427178 44426876 ID=Msa0549330-mRNA-1:exon:11552;Parent=Msa0549330-mRNA-1
chr4_1 exon 44428074 44428497 44428074 ID=Msa0549330-mRNA-1:exon:11551;Parent=Msa0549330-mRNA-1
chr4_1 five_prime_UTR 44428257 44428497 44428257 ID=Msa0549330-mRNA-1:five_prime_utr;Parent=Msa0549330-mRNA-1
chr4_1 CDS 44428074 44428256 44428074 ID=Msa0549330-mRNA-1:cds;Parent=Msa0549330-mRNA-1
chr4_1 CDS 44426876 44427178 44426876 ID=Msa0549330-mRNA-1:cds;Parent=Msa0549330-mRNA-1
chr4_1 CDS 44426602 44426685 44426602 ID=Msa0549330-mRNA-1:cds;Parent=Msa0549330-mRNA-1
chr4_1 CDS 44426072 44426308 44426072 ID=Msa0549330-mRNA-1:cds;Parent=Msa0549330-mRNA-1
chr4_1 three_prime_UTR 44425428 44426071 44425428 ID=Msa0549330-mRNA-1:three_prime_utr;Parent=Msa0549330-mRNA-1
Gene Sequence

>Msa0549330

ATGAAAATACAGTGTGATGTGTGTGAAAAAGCTCCTGCTACGGTGATTTGTTGTGCTGATGAAGCTGCTTTGTGTGCTAAATGTGATGTTGAAGTTCATGCTGCTAATAAGCTTGCTAGCAAGCATCAAAGGCTTCTTCTTCAATGTCTTTCTAACAAGCTTCCTAAATGTGATATCTGCCAAGATAAGCCAGCTTTCATATTTTGTGTTGAAGACCGAGCACTGTTCTGTAAGGACTGTGATGAACCAATTCATGTAGCTGGTAGTCTTTCTGGAAACCACCAGCGCTTCCTTGCTACCGGTATCCGTGTGGCTTTGGCTTCTAGTTGCACCAAAGACAATGAGAAAAGCCAAGTTGAACCATCTAATCCAGACACGCAACAAGTTCCCGTCAAAGTTTCTCCTCCTCAGCAAGTGCCTAGTTTCGCATCCTCTTGGGCTGTTGATGATTTCTTGGAATTAACTGGCTTTGATTCACCAGACAAGGAAACCAACTTGGGTTGGCTTTGTGGTGTTGGCTTGGGACCTTCGAGTGTGCTCCTCTCAAGGTCACATGTTCGATTCTCCCCGAAGCAATCCATGGAGTTTGGAGAGCTTGAATGGCTATCGGATGCAGGTCTTTTCAATGACCAGTTTCCTCAGGAAGGTTTAGCTGCAGCTGAAGTTCCGCAACTTCCAGTAATGCATGCTGGCAGTGTTTATCCTTACAAAGCCTCTAAATCTTATATGTCTTACAAAAAGCCTAGGATTGAAGTCCGACATGAAGACGATGATGATGAGCACTTCATGGTGCCAGATCTCGGCTAA

Protein sequence

>Msa0549330

MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPKCDICQDKPAFIFCVEDRALFCKDCDEPIHVAGSLSGNHQRFLATGIRVALASSCTKDNEKSQVEPSNPDTQQVPVKVSPPQQVPSFASSWAVDDFLELTGFDSPDKETNLGWLCGVGLGPSSVLLSRSHVRFSPKQSMEFGELEWLSDAGLFNDQFPQEGLAAAEVPQLPVMHAGSVYPYKASKSYMSYKKPRIEVRHEDDDDEHFMVPDLG*