AlfalfaGEDB | Msa0795710

M. sativa cultivar zhongmu-4 / Msa0795710

KEGG: K01669
GO: GO:0000166 GO:0000719 GO:0003674 GO:0003824 GO:0003904 GO:0003913 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0016829 GO:0016830 GO:0033554 GO:0034641 GO:0036094 GO:0043167 GO:0043168 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051716 GO:0071704 GO:0071949 GO:0090304 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363
PFAM: PF00875.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0795710	XP_003611237.2	97.395	499	13	0	1	499	1	499	0.0	1022

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0795710	sp\|Q9SB00\|PHR_ARATH	73.805	481	118	4	13	486	6	485	0.0	760

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0795710	G7KG67	97.395	499	13	0	1	499	1	499	0.0	1022

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005690	Msa0795710	0.806302	8.786952e-50	-8.615850e-47
Msa0006820	Msa0795710	0.801978	6.974948e-49	-8.615850e-47
Msa0018470	Msa0795710	0.803106	4.084757e-49	-8.615850e-47
Msa0020320	Msa0795710	0.809124	2.209724e-50	-8.615850e-47
Msa0032450	Msa0795710	0.842124	3.130820e-58	-8.615850e-47
Msa0039920	Msa0795710	0.869629	2.682933e-66	-8.615850e-47
Msa0040090	Msa0795710	0.869613	2.714848e-66	-8.615850e-47
Msa0041780	Msa0795710	0.804975	1.668514e-49	-8.615850e-47
Msa0047470	Msa0795710	0.800222	1.594428e-48	-8.615850e-47
Msa0057740	Msa0795710	0.823863	1.101589e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0795710	MtrunA17_Chr5g0398681	97.260	438	12	0	1	438	37	474	0.0	900
Msa0795710	MtrunA17_Chr5g0398691	97.959	49	1	0	451	499	1	49	2.23e-26	101

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0795710	AT1G12370.2	73.805	481	118	4	13	486	6	485	760
Msa0795710	AT1G12370.1	72.557	481	118	5	13	486	6	479	740
Msa0795710	AT1G12370.3	68.191	481	115	5	13	486	6	455	685

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Find 136 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGATTCTTGACTAAA+AGG	0.235044	5_3:+7739166	Msa0795710:CDS
AAACGGGTCCCGTCGTGTAC+TGG	0.419132	5_3:+7737854	Msa0795710:CDS
AAAGGCTGTAGATACTTTCT+TGG	0.380747	5_3:+7739433	Msa0795710:intron
AAAGTGCAGTTGGTTTACAA+GGG	0.645680	5_3:-7739218	None:intergenic
AAATATCATCAGCCAGACAA+TGG	0.615090	5_3:-7740910	None:intergenic
AACAACGGCAACAGGAACTT+TGG	0.432053	5_3:-7737944	None:intergenic
AACATGTGGTCGCTTATCAG+AGG	0.633768	5_3:-7739567	None:intergenic
AAGATACTTGAATGGACAAG+AGG	0.585996	5_3:+7740085	Msa0795710:CDS
AAGTATCATCAGCCAAACAA+TGG	0.628100	5_3:-7741026	None:intergenic
AATCCTCAGGATTACAACAG+CGG	0.707260	5_3:-7740825	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCAACGGTTGAAAGATAAT+TGG	+	chr5_3:7737887-7737906	Msa0795710:CDS	30.0%
TCAACGGTTGAAAGATAATT+GGG	+	chr5_3:7737888-7737907	Msa0795710:CDS	30.0%
TATACCCGAACTAAGAAAAA+GGG	-	chr5_3:7738075-7738094	None:intergenic	30.0%
ATATACCCGAACTAAGAAAA+AGG	-	chr5_3:7738076-7738095	None:intergenic	30.0%
AAATGTCGATATTGTTATGC+TGG	+	chr5_3:7738217-7738236	Msa0795710:intron	30.0%
CATTTCTTCACTTCTCTTAA+AGG	-	chr5_3:7738618-7738637	None:intergenic	30.0%
AGTATAGTGCTAGAACAATA+AGG	+	chr5_3:7738736-7738755	Msa0795710:CDS	30.0%
GTATAGTGCTAGAACAATAA+GGG	+	chr5_3:7738737-7738756	Msa0795710:CDS	30.0%
TATAGTGCTAGAACAATAAG+GGG	+	chr5_3:7738738-7738757	Msa0795710:CDS	30.0%
ATATCATTGCTCAAGTGTTA+AGG	+	chr5_3:7738865-7738884	Msa0795710:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	7737730	7741272	7737730	ID=Msa0795710;Name=Msa0795710
chr5_3	mRNA	7737730	7741272	7737730	ID=Msa0795710-mRNA-1;Parent=Msa0795710;Name=Msa0795710-mRNA-1;_AED=0.12;_eAED=0.12;_QI=42\|1\|1\|1\|1\|1\|9\|423\|499
chr5_3	exon	7737730	7738089	7737730	ID=Msa0795710-mRNA-1:exon:3170;Parent=Msa0795710-mRNA-1
chr5_3	exon	7738543	7738886	7738543	ID=Msa0795710-mRNA-1:exon:3171;Parent=Msa0795710-mRNA-1
chr5_3	exon	7739089	7739329	7739089	ID=Msa0795710-mRNA-1:exon:3172;Parent=Msa0795710-mRNA-1
chr5_3	exon	7739437	7739594	7739437	ID=Msa0795710-mRNA-1:exon:3173;Parent=Msa0795710-mRNA-1
chr5_3	exon	7739668	7739704	7739668	ID=Msa0795710-mRNA-1:exon:3174;Parent=Msa0795710-mRNA-1
chr5_3	exon	7739823	7739881	7739823	ID=Msa0795710-mRNA-1:exon:3175;Parent=Msa0795710-mRNA-1
chr5_3	exon	7740069	7740150	7740069	ID=Msa0795710-mRNA-1:exon:3176;Parent=Msa0795710-mRNA-1
chr5_3	exon	7740264	7740335	7740264	ID=Msa0795710-mRNA-1:exon:3177;Parent=Msa0795710-mRNA-1
chr5_3	exon	7740661	7741272	7740661	ID=Msa0795710-mRNA-1:exon:3178;Parent=Msa0795710-mRNA-1
chr5_3	five_prime_UTR	7737730	7737771	7737730	ID=Msa0795710-mRNA-1:five_prime_utr;Parent=Msa0795710-mRNA-1
chr5_3	CDS	7737772	7738089	7737772	ID=Msa0795710-mRNA-1:cds;Parent=Msa0795710-mRNA-1
chr5_3	CDS	7738543	7738886	7738543	ID=Msa0795710-mRNA-1:cds;Parent=Msa0795710-mRNA-1
chr5_3	CDS	7739089	7739329	7739089	ID=Msa0795710-mRNA-1:cds;Parent=Msa0795710-mRNA-1
chr5_3	CDS	7739437	7739594	7739437	ID=Msa0795710-mRNA-1:cds;Parent=Msa0795710-mRNA-1
chr5_3	CDS	7739668	7739704	7739668	ID=Msa0795710-mRNA-1:cds;Parent=Msa0795710-mRNA-1
chr5_3	CDS	7739823	7739881	7739823	ID=Msa0795710-mRNA-1:cds;Parent=Msa0795710-mRNA-1
chr5_3	CDS	7740069	7740150	7740069	ID=Msa0795710-mRNA-1:cds;Parent=Msa0795710-mRNA-1
chr5_3	CDS	7740264	7740335	7740264	ID=Msa0795710-mRNA-1:cds;Parent=Msa0795710-mRNA-1
chr5_3	CDS	7740661	7740849	7740661	ID=Msa0795710-mRNA-1:cds;Parent=Msa0795710-mRNA-1
chr5_3	three_prime_UTR	7740850	7741272	7740850	ID=Msa0795710-mRNA-1:three_prime_utr;Parent=Msa0795710-mRNA-1

Gene Sequence

>Msa0795710

ATGGCTACCACACCGTCGCCGCCGCCAATTTCGCCGTCGGTGAACCCTGGTCGCATTCGGACCTTGAAAGAAGGTTCTGGAAAAACGGGTCCCGTCGTGTACTGGATGTTCAGAGATCAACGGTTGAAAGATAATTGGGCTCTCATTCACGCTGTTCATCAAGCTAACAAAGCCAAAGTTCCTGTTGCCGTTGTTTTTAATCTGTTTGATCATTTTCTTGGTGCAAAGGCGCGTCATTTAGGGTTTATGCTTAAGGGTTTGCGCCAATTGTGTCACCAACTTCAGCATTCTCTTCATATACCCTTTTTCTTAGTTCGGGGTGAGGCGGAGGAAACTGTATCGAAGTTTGTTAGAGAATGTGGAGCTTCACTTTTGGTGACAGATATGTCACCTTTAAGAGAAGTGAAGAAATGCAAATCTGAGATTTGTGAGAGGGTTAGTGATTTGGTTACTGTTCATGAAGTTGATGCTCACAATGTTGTGCCTCTTTGGGTTGCTTCTGAGAAGTTGGAGTATAGTGCTAGAACAATAAGGGGAAAGATAAACAAAAAGCTTTCTGATTATCTTGTTGATTTTCCTGATGTCGAACCACCAACTGCGAAATGGGTCATCACTGAGGACCATGTCATAGACTGGGATGATATCATTGCTCAAGTGTTAAGGAGTGGAGCTGAGGTTCCTGAAGTGGATTGGTGTGAGCCTGGAGAAATTGCTGCAATGGAAGTGTTGATGGGAAGTAAAAATGGATTCTTGACTAAAAGGTTGAGAAATTATTCCACAGATCGCAATAACCCTTGTAAACCAACTGCACTTTCTGGTTTATCTCCCTATTTGCATTTTGGACAGATATCTGCTCAAAGATGTGCTTTAGAAGCTCGTAAGCTACGAGCTTCATATCCTCAGGCTGTAGATACTTTCTTGGAGGAGTTGATTGTTCGGAGAGAACTTGCTGATAACTTTTGCTTCTATCAGCCTCATTACGATTCATTACAAGGAGCATGGGAGTGGGCTCGTAAGACCTTACTCGACCACGCCTCTGATAAGCGACCACATGTTTACACAAGGGAGCAGTTGGAGAAGGCACAAACTGCTGATCCTCTTTGGAATGCTTCTCAATTGGAGATGGTTCACTATGGGAAAATGCACGGTTTTATGCGAATGTATTGGGCAAAGAAGATACTTGAATGGACAAGAGGACCTGAAGAAGCACTTGAGATATGTATATATTTAAATGATAAGTATGAAATGGATGGGAGGGATCCAAGTGGTTATAACGGCTGCATGTGGTCTATATGTGGGGTACATGATCAGGGGTGGCGAGAGCGTCCCATTTTTGGGAAAATTCGATACATGAATTATGAAGGGTGCAAAAGAAAATTTGATGTTGACAGATACATTGCATATGTTAATAAAATAGTTGGTGAGCTCAGGAAGAGAAAAGCGGAAAATTTGCTATCTGAAAAGGAGAAAGTACTCCGCTGTTGTAATCCTGAGGATTGA

Protein sequence

>Msa0795710

MATTPSPPPISPSVNPGRIRTLKEGSGKTGPVVYWMFRDQRLKDNWALIHAVHQANKAKVPVAVVFNLFDHFLGAKARHLGFMLKGLRQLCHQLQHSLHIPFFLVRGEAEETVSKFVRECGASLLVTDMSPLREVKKCKSEICERVSDLVTVHEVDAHNVVPLWVASEKLEYSARTIRGKINKKLSDYLVDFPDVEPPTAKWVITEDHVIDWDDIIAQVLRSGAEVPEVDWCEPGEIAAMEVLMGSKNGFLTKRLRNYSTDRNNPCKPTALSGLSPYLHFGQISAQRCALEARKLRASYPQAVDTFLEELIVRRELADNFCFYQPHYDSLQGAWEWARKTLLDHASDKRPHVYTREQLEKAQTADPLWNASQLEMVHYGKMHGFMRMYWAKKILEWTRGPEEALEICIYLNDKYEMDGRDPSGYNGCMWSICGVHDQGWRERPIFGKIRYMNYEGCKRKFDVDRYIAYVNKIVGELRKRKAENLLSEKEKVLRCCNPED*