Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605400 | XP_013456384.2 | 84.932 | 438 | 31 | 1 | 1 | 403 | 1 | 438 | 0.0 | 742 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605400 | sp|Q9LN62|RRA3_ARATH | 61.048 | 439 | 123 | 6 | 1 | 402 | 1 | 428 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004590 | Msa0605400 | 0.817474 | 3.235749e-52 | -8.615850e-47 |
| Msa0024280 | Msa0605400 | 0.800398 | 1.468219e-48 | -8.615850e-47 |
| Msa0048950 | Msa0605400 | 0.826933 | 2.066772e-54 | -8.615850e-47 |
| Msa0057860 | Msa0605400 | 0.801380 | 9.254579e-49 | -8.615850e-47 |
| Msa0059880 | Msa0605400 | 0.838189 | 3.334194e-57 | -8.615850e-47 |
| Msa0072030 | Msa0605400 | 0.806766 | 7.013884e-50 | -8.615850e-47 |
| Msa0102920 | Msa0605400 | 0.810143 | 1.334459e-50 | -8.615850e-47 |
| Msa0120050 | Msa0605400 | 0.811739 | 6.021622e-51 | -8.615850e-47 |
| Msa0603950 | Msa0605400 | 0.802594 | 5.210007e-49 | -8.615850e-47 |
| Msa0605400 | Msa0605410 | 0.818593 | 1.807586e-52 | -8.615850e-47 |
| Msa0605400 | Msa0605470 | 0.825464 | 4.620577e-54 | -8.615850e-47 |
| Msa0605400 | Msa0623980 | 0.839267 | 1.754570e-57 | -8.615850e-47 |
| Msa0605400 | Msa0624930 | 0.800530 | 1.380458e-48 | -8.615850e-47 |
| Msa0605400 | Msa0626980 | 0.805426 | 1.342890e-49 | -8.615850e-47 |
| Msa0605400 | Msa0627360 | 0.805179 | 1.512747e-49 | -8.615850e-47 |
| Msa0605400 | Msa0643190 | 0.823305 | 1.488014e-53 | -8.615850e-47 |
| Msa0605400 | Msa0643840 | 0.806360 | 8.544244e-50 | -8.615850e-47 |
| Msa0605400 | Msa0646210 | 0.800924 | 1.146854e-48 | -8.615850e-47 |
| Msa0605400 | Msa0670360 | 0.817625 | 2.993372e-52 | -8.615850e-47 |
| Msa0605400 | Msa0671640 | 0.822172 | 2.731042e-53 | -8.615850e-47 |
| Msa0605400 | Msa0673940 | 0.809322 | 2.004209e-50 | -8.615850e-47 |
| Msa0605400 | Msa0676190 | 0.805134 | 1.545386e-49 | -8.615850e-47 |
| Msa0605400 | Msa0676200 | 0.800091 | 1.695509e-48 | -8.615850e-47 |
| Msa0605400 | Msa0678620 | 0.832027 | 1.194786e-55 | -8.615850e-47 |
| Msa0605400 | Msa0684720 | 0.803786 | 2.952335e-49 | -8.615850e-47 |
| Msa0605400 | Msa0686020 | 0.871659 | 5.776251e-67 | -8.615850e-47 |
| Msa0605400 | Msa0711260 | 0.811035 | 8.561242e-51 | -8.615850e-47 |
| Msa0605400 | Msa0727480 | 0.837426 | 5.235780e-57 | -8.615850e-47 |
| Msa0605400 | Msa0735140 | 0.803636 | 3.171222e-49 | -8.615850e-47 |
| Msa0605400 | Msa0751960 | 0.803599 | 3.227682e-49 | -8.615850e-47 |
| Msa0605400 | Msa0761830 | 0.800710 | 1.268588e-48 | -8.615850e-47 |
| Msa0605400 | Msa0768670 | 0.835077 | 2.069951e-56 | -8.615850e-47 |
| Msa0605400 | Msa0768720 | 0.832932 | 7.127484e-56 | -8.615850e-47 |
| Msa0605400 | Msa0777060 | 0.812571 | 3.964157e-51 | -8.615850e-47 |
| Msa0605400 | Msa0777070 | 0.826770 | 2.260979e-54 | -8.615850e-47 |
| Msa0605400 | Msa0787860 | 0.800429 | 1.447435e-48 | -8.615850e-47 |
| Msa0605400 | Msa0791300 | 0.801111 | 1.050187e-48 | -8.615850e-47 |
| Msa0605400 | Msa0802590 | 0.810384 | 1.184185e-50 | -8.615850e-47 |
| Msa0605400 | Msa0806930 | 0.804515 | 2.081699e-49 | -8.615850e-47 |
| Msa0605400 | Msa0814160 | 0.817776 | 2.766397e-52 | -8.615850e-47 |
| Msa0605400 | Msa0831890 | 0.803328 | 3.673835e-49 | -8.615850e-47 |
| Msa0605400 | Msa0841130 | 0.812466 | 4.180897e-51 | -8.615850e-47 |
| Msa0605400 | Msa0854840 | 0.830406 | 2.989895e-55 | -8.615850e-47 |
| Msa0605400 | Msa0856740 | 0.802238 | 6.168289e-49 | -8.615850e-47 |
| Msa0605400 | Msa0868820 | 0.801304 | 9.589866e-49 | -8.615850e-47 |
| Msa0605400 | Msa0869660 | 0.802612 | 5.164162e-49 | -8.615850e-47 |
| Msa0605400 | Msa0883640 | 0.857045 | 2.132672e-62 | -8.615850e-47 |
| Msa0605400 | Msa0902340 | 0.845486 | 3.942000e-59 | -8.615850e-47 |
| Msa0605400 | Msa0910830 | 0.879374 | 1.313278e-69 | -8.615850e-47 |
| Msa0605400 | Msa0932890 | 0.802034 | 6.793225e-49 | -8.615850e-47 |
| Msa0605400 | Msa0941120 | 0.813005 | 3.186008e-51 | -8.615850e-47 |
| Msa0605400 | Msa0960090 | 0.859351 | 4.393199e-63 | -8.615850e-47 |
| Msa0605400 | Msa0985700 | 0.859355 | 4.379032e-63 | -8.615850e-47 |
| Msa0605400 | Msa1003110 | 0.803596 | 3.232593e-49 | -8.615850e-47 |
| Msa0605400 | Msa1006170 | 0.813218 | 2.861029e-51 | -8.615850e-47 |
| Msa0605400 | Msa1007940 | 0.807846 | 4.139873e-50 | -8.615850e-47 |
| Msa0605400 | Msa1007950 | 0.805301 | 1.425806e-49 | -8.615850e-47 |
| Msa0605400 | Msa1020540 | 0.813166 | 2.937549e-51 | -8.615850e-47 |
| Msa0605400 | Msa1021620 | 0.864074 | 1.579634e-64 | -8.615850e-47 |
| Msa0605400 | Msa1024350 | 0.870582 | 1.308743e-66 | -8.615850e-47 |
| Msa0605400 | Msa1026050 | 0.817875 | 2.627990e-52 | -8.615850e-47 |
| Msa0605400 | Msa1041650 | 0.802157 | 6.410867e-49 | -8.615850e-47 |
| Msa0605400 | Msa1061670 | 0.829848 | 4.092257e-55 | -8.615850e-47 |
| Msa0605400 | Msa1076830 | 0.804763 | 1.847628e-49 | -8.615850e-47 |
| Msa0605400 | Msa1087370 | 0.805697 | 1.177666e-49 | -8.615850e-47 |
| Msa0605400 | Msa1087380 | 0.800858 | 1.183090e-48 | -8.615850e-47 |
| Msa0605400 | Msa1106960 | 0.817801 | 2.731233e-52 | -8.615850e-47 |
| Msa0605400 | Msa1109880 | 0.839639 | 1.404711e-57 | -8.615850e-47 |
| Msa0605400 | Msa1109890 | 0.836852 | 7.337320e-57 | -8.615850e-47 |
| Msa0605400 | Msa1149020 | 0.839139 | 1.894595e-57 | -8.615850e-47 |
| Msa0605400 | Msa1170320 | 0.811354 | 7.302323e-51 | -8.615850e-47 |
| Msa0605400 | Msa1187900 | 0.841546 | 4.451109e-58 | -8.615850e-47 |
| Msa0605400 | Msa1214960 | 0.855685 | 5.344871e-62 | -8.615850e-47 |
| Msa0605400 | Msa1242060 | 0.804880 | 1.746773e-49 | -8.615850e-47 |
| Msa0605400 | Msa1286420 | 0.832092 | 1.151575e-55 | -8.615850e-47 |
| Msa0605400 | Msa1296870 | 0.806219 | 9.149961e-50 | -8.615850e-47 |
| Msa0605400 | Msa1313720 | 0.806417 | 8.309218e-50 | -8.615850e-47 |
| Msa0605400 | Msa1323030 | 0.844356 | 7.955759e-59 | -8.615850e-47 |
| Msa0605400 | Msa1323120 | 0.823888 | 1.086546e-53 | -8.615850e-47 |
| Msa0605400 | Msa1357490 | 0.830365 | 3.059274e-55 | -8.615850e-47 |
| Msa0605400 | Msa1357860 | 0.828437 | 8.994696e-55 | -8.615850e-47 |
| Msa0605400 | Msa1366470 | 0.800932 | 1.142932e-48 | -8.615850e-47 |
| Msa0605400 | Msa1373560 | 0.843572 | 1.290045e-58 | -8.615850e-47 |
| Msa0605400 | Msa1376070 | 0.805559 | 1.259106e-49 | -8.615850e-47 |
| Msa0605400 | Msa1377520 | 0.819896 | 9.126800e-53 | -8.615850e-47 |
| Msa0605400 | Msa1378400 | 0.806075 | 9.809034e-50 | -8.615850e-47 |
| Msa0605400 | Msa1407670 | 0.815370 | 9.573592e-52 | -8.615850e-47 |
| Msa0605400 | Msa1421120 | 0.801101 | 1.055178e-48 | -8.615850e-47 |
| Msa0605400 | Msa1421130 | 0.806263 | 8.955098e-50 | -8.615850e-47 |
| Msa0605400 | Msa1449770 | 0.819773 | 9.739305e-53 | -8.615850e-47 |
| Msa0605400 | Msa1459610 | 0.827755 | 1.313090e-54 | -8.615850e-47 |
| Msa0131460 | Msa0605400 | 0.811079 | 8.377569e-51 | -8.615850e-47 |
| Msa0139460 | Msa0605400 | 0.805548 | 1.265994e-49 | -8.615850e-47 |
| Msa0140270 | Msa0605400 | 0.804413 | 2.186578e-49 | -8.615850e-47 |
| Msa0143680 | Msa0605400 | 0.809000 | 2.348918e-50 | -8.615850e-47 |
| Msa0143710 | Msa0605400 | 0.828340 | 9.493729e-55 | -8.615850e-47 |
| Msa0143740 | Msa0605400 | 0.826592 | 2.492437e-54 | -8.615850e-47 |
| Msa0143770 | Msa0605400 | 0.825729 | 3.998526e-54 | -8.615850e-47 |
| Msa0143940 | Msa0605400 | 0.806064 | 9.862924e-50 | -8.615850e-47 |
| Msa0144010 | Msa0605400 | 0.815806 | 7.653126e-52 | -8.615850e-47 |
| Msa0147670 | Msa0605400 | 0.800678 | 1.287501e-48 | -8.615850e-47 |
| Msa0147680 | Msa0605400 | 0.831054 | 2.074993e-55 | -8.615850e-47 |
| Msa0150910 | Msa0605400 | 0.815078 | 1.111574e-51 | -8.615850e-47 |
| Msa0163340 | Msa0605400 | 0.814159 | 1.775660e-51 | -8.615850e-47 |
| Msa0190670 | Msa0605400 | 0.834868 | 2.336920e-56 | -8.615850e-47 |
| Msa0210790 | Msa0605400 | 0.819089 | 1.394924e-52 | -8.615850e-47 |
| Msa0210850 | Msa0605400 | 0.824911 | 6.245111e-54 | -8.615850e-47 |
| Msa0216760 | Msa0605400 | 0.803963 | 2.712300e-49 | -8.615850e-47 |
| Msa0223880 | Msa0605400 | 0.813759 | 2.175457e-51 | -8.615850e-47 |
| Msa0226410 | Msa0605400 | 0.804626 | 1.973957e-49 | -8.615850e-47 |
| Msa0374130 | Msa0605400 | 0.829723 | 4.389245e-55 | -8.615850e-47 |
| Msa0414480 | Msa0605400 | 0.800187 | 1.620884e-48 | -8.615850e-47 |
| Msa0430320 | Msa0605400 | 0.803578 | 3.259933e-49 | -8.615850e-47 |
| Msa0430460 | Msa0605400 | 0.807720 | 4.404601e-50 | -8.615850e-47 |
| Msa0469550 | Msa0605400 | 0.812573 | 3.961355e-51 | -8.615850e-47 |
| Msa0251120 | Msa0605400 | 0.803253 | 3.807004e-49 | -8.615850e-47 |
| Msa0265060 | Msa0605400 | 0.817889 | 2.609673e-52 | -8.615850e-47 |
| Msa0274250 | Msa0605400 | 0.805829 | 1.104937e-49 | -8.615850e-47 |
| Msa0278950 | Msa0605400 | 0.803490 | 3.400995e-49 | -8.615850e-47 |
| Msa0298270 | Msa0605400 | 0.812110 | 4.998328e-51 | -8.615850e-47 |
| Msa0340650 | Msa0605400 | 0.811266 | 7.630700e-51 | -8.615850e-47 |
| Msa0343720 | Msa0605400 | 0.814282 | 1.667920e-51 | -8.615850e-47 |
| Msa0491760 | Msa0605400 | 0.801249 | 9.844177e-49 | -8.615850e-47 |
| Msa0491770 | Msa0605400 | 0.815748 | 7.885719e-52 | -8.615850e-47 |
| Msa0515260 | Msa0605400 | 0.812504 | 4.101882e-51 | -8.615850e-47 |
| Msa0529360 | Msa0605400 | 0.808547 | 2.935228e-50 | -8.615850e-47 |
| Msa0530660 | Msa0605400 | 0.805514 | 1.286650e-49 | -8.615850e-47 |
| Msa0538450 | Msa0605400 | 0.813448 | 2.546887e-51 | -8.615850e-47 |
| Msa0538520 | Msa0605400 | 0.806746 | 7.082572e-50 | -8.615850e-47 |
| Msa0540100 | Msa0605400 | 0.805647 | 1.206899e-49 | -8.615850e-47 |
| Msa0549920 | Msa0605400 | 0.876704 | 1.129644e-68 | -8.615850e-47 |
| Msa0549930 | Msa0605400 | 0.815194 | 1.047520e-51 | -8.615850e-47 |
| Msa0566460 | Msa0605400 | 0.800506 | 1.395890e-48 | -8.615850e-47 |
| Msa0579530 | Msa0605400 | 0.808542 | 2.943354e-50 | -8.615850e-47 |
| Msa0584970 | Msa0605400 | 0.809289 | 2.036365e-50 | -8.615850e-47 |
| Msa0587180 | Msa0605400 | 0.805870 | 1.083312e-49 | -8.615850e-47 |
| Msa0591490 | Msa0605400 | 0.806493 | 8.009881e-50 | -8.615850e-47 |
| Msa0602050 | Msa0605400 | 0.820550 | 6.464010e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605400 | MtrunA17_Chr4g0034621 | 84.703 | 438 | 32 | 1 | 1 | 403 | 1 | 438 | 0.0 | 741 |
| Msa0605400 | MtrunA17_Chr4g0034611 | 78.311 | 438 | 59 | 2 | 1 | 403 | 1 | 437 | 0.0 | 707 |
| Msa0605400 | MtrunA17_Chr4g0034641 | 77.982 | 436 | 56 | 2 | 1 | 401 | 1 | 431 | 0.0 | 692 |
| Msa0605400 | MtrunA17_Chr4g0034631 | 78.670 | 436 | 51 | 2 | 1 | 401 | 1 | 429 | 0.0 | 689 |
| Msa0605400 | MtrunA17_Chr4g0034661 | 75.688 | 436 | 55 | 3 | 1 | 401 | 1 | 420 | 0.0 | 645 |
| Msa0605400 | MtrunA17_Chr4g0034651 | 74.083 | 436 | 69 | 2 | 1 | 401 | 34 | 460 | 0.0 | 637 |
| Msa0605400 | MtrunA17_Chr1g0154701 | 62.558 | 430 | 119 | 4 | 7 | 401 | 5 | 427 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605400 | AT1G19360.1 | 61.048 | 439 | 123 | 6 | 1 | 402 | 1 | 428 | 0.0 | 527 |
| Msa0605400 | AT1G19360.2 | 61.048 | 439 | 123 | 6 | 1 | 402 | 1 | 428 | 0.0 | 527 |
| Msa0605400 | AT1G75110.1 | 59.906 | 424 | 134 | 2 | 13 | 401 | 5 | 427 | 0.0 | 521 |
| Msa0605400 | AT1G75120.1 | 55.932 | 413 | 121 | 5 | 24 | 401 | 16 | 402 | 2.40e-160 | 457 |
Find 93 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCCTTCAATTGAGCTTT+TGG | 0.172013 | 4_2:-51199105 | Msa0605400:CDS |
| AGGATATGGGTTTACAATTC+TGG | 0.249487 | 4_2:-51199149 | Msa0605400:CDS |
| TTCATTCGCCGAAGCTTATC+AGG | 0.266822 | 4_2:+51198861 | None:intergenic |
| CACAATAACATGACAGCTTA+TGG | 0.281097 | 4_2:-51199230 | Msa0605400:CDS |
| TAGTTCATACCACGAGGATA+TGG | 0.304296 | 4_2:-51199163 | Msa0605400:CDS |
| AAGGCAACAACTAGATAATT+AGG | 0.329864 | 4_2:+51199502 | None:intergenic |
| TCATGCTTCTAAAAGAACTA+TGG | 0.336021 | 4_2:-51198985 | Msa0605400:CDS |
| AGCATGAAGCCCGTCATAAC+CGG | 0.354815 | 4_2:+51199001 | None:intergenic |
| GCTTCTTGCATTAGGTAAAC+AGG | 0.362356 | 4_2:-51199722 | Msa0605400:CDS |
| TCTAATATATTTGCCAATCT+CGG | 0.386117 | 4_2:+51199625 | None:intergenic |
| TAATTCACGTGAATAATTAC+CGG | 0.389710 | 4_2:+51198888 | None:intergenic |
| TGAGAAACAAAGAATTCATT+AGG | 0.391068 | 4_2:+51203374 | None:intergenic |
| GTTGTTGATTATTATGTCAA+TGG | 0.405758 | 4_2:-51198834 | Msa0605400:CDS |
| TATACCGACTCTCTTGATAT+TGG | 0.413611 | 4_2:+51199525 | None:intergenic |
| AAAGAGTTCTTCATTGAAAA+CGG | 0.417137 | 4_2:+51199037 | None:intergenic |
| AACAGTAGGATTGGTTCTTA+AGG | 0.420894 | 4_2:+51199669 | None:intergenic |
| GGTTACCACTTTGAGCCATC+AGG | 0.421929 | 4_2:+51198786 | None:intergenic |
| CTAATATATTTGCCAATCTC+GGG | 0.422456 | 4_2:+51199626 | None:intergenic |
| TGATCATCTATACCGTGATT+CGG | 0.426234 | 4_2:-51199276 | Msa0605400:CDS |
| CCTTGCAAACTCCAATGTTA+AGG | 0.426563 | 4_2:-51199569 | Msa0605400:CDS |
| ATCATTGCCGCTGTAATCAT+TGG | 0.429648 | 4_2:-51203431 | Msa0605400:CDS |
| AATCGTCACCTACCTATTGC+TGG | 0.431274 | 4_2:-51203338 | Msa0605400:CDS |
| TGAGTCTTGGGTCCAGCAAT+AGG | 0.439605 | 4_2:+51203326 | None:intergenic |
| CATGTTAAAATCAGAATTTG+TGG | 0.440337 | 4_2:-51199845 | Msa0605400:CDS |
| CTCAATCTCTACTGATATCA+AGG | 0.441387 | 4_2:-51203454 | Msa0605400:CDS |
| TTGTTGATTATTATGTCAAT+GGG | 0.453648 | 4_2:-51198833 | Msa0605400:CDS |
| TTGGTCCCATGCTTTCTCCT+TGG | 0.456387 | 4_2:+51199061 | None:intergenic |
| CTCGGGTTCACGGATTCATC+AGG | 0.461693 | 4_2:+51199643 | None:intergenic |
| GTAATCATTGGAGTTCCTAC+TGG | 0.469496 | 4_2:-51203419 | Msa0605400:CDS |
| AGCTCAATTGAAGGAATGGT+TGG | 0.470800 | 4_2:+51199110 | None:intergenic |
| ACAGTATCAATACCATCATC+CGG | 0.475603 | 4_2:+51199421 | None:intergenic |
| AGTTCATACCACGAGGATAT+GGG | 0.478586 | 4_2:-51199162 | Msa0605400:CDS |
| TGAATCCGTGAACCCGAGAT+TGG | 0.481653 | 4_2:-51199638 | Msa0605400:CDS |
| AATAGGTAGGTGACGATTTG+AGG | 0.481988 | 4_2:+51203343 | None:intergenic |
| TTAAGGAGACCCTCGAGGTC+TGG | 0.486077 | 4_2:-51199552 | Msa0605400:CDS |
| ATCAGGAGCAACAGTAGGAT+TGG | 0.486219 | 4_2:+51199660 | None:intergenic |
| CAAAAGCTCAATTGAAGGAA+TGG | 0.491186 | 4_2:+51199106 | None:intergenic |
| GGAAAGGTTTGAGAGCATCT+TGG | 0.491288 | 4_2:+51198808 | None:intergenic |
| CCGTCCCATCCCGGTTATGA+CGG | 0.491722 | 4_2:-51199011 | Msa0605400:CDS |
| TACAAAAGAGACCCGGATGA+TGG | 0.496519 | 4_2:-51199433 | Msa0605400:intron |
| TAACCTCAGTAAATTAAAAC+CGG | 0.496942 | 4_2:-51198907 | Msa0605400:CDS |
| TATCTATGACGAACCTGTGA+TGG | 0.498138 | 4_2:-51199198 | Msa0605400:CDS |
| GAAAATGAAACCTGAGTCTT+GGG | 0.499818 | 4_2:+51203314 | None:intergenic |
| CTTGATATCAGTAGAGATTG+AGG | 0.500376 | 4_2:+51203455 | None:intergenic |
| CACTTTGAGCCATCAGGGAA+AGG | 0.502373 | 4_2:+51198792 | None:intergenic |
| CGATCCAAAAGCTCAATTGA+AGG | 0.505035 | 4_2:+51199101 | None:intergenic |
| TCACGGTATAGATGATCAAA+AGG | 0.505121 | 4_2:+51199281 | None:intergenic |
| ATTTGCCAATCTCGGGTTCA+CGG | 0.510225 | 4_2:+51199633 | None:intergenic |
| CTTTGAAATTTCCTCGTCGA+AGG | 0.515983 | 4_2:+51199483 | None:intergenic |
| CCTTAACATTGGAGTTTGCA+AGG | 0.516596 | 4_2:+51199569 | None:intergenic |
| CGTCCCATCCCGGTTATGAC+GGG | 0.525047 | 4_2:-51199010 | Msa0605400:CDS |
| GGCTTTCCAAGGAGAAAGCA+TGG | 0.525521 | 4_2:-51199067 | Msa0605400:CDS |
| TGAGGGTTGTTCTTCATCAA+AGG | 0.532197 | 4_2:+51203473 | None:intergenic |
| TTGATATCAGTAGAGATTGA+GGG | 0.536003 | 4_2:+51203456 | None:intergenic |
| GTTCTTCATTGAAAACGGCT+TGG | 0.536649 | 4_2:+51199042 | None:intergenic |
| ATTACCATCCTGATAAGCTT+CGG | 0.537140 | 4_2:-51198869 | Msa0605400:CDS |
| TGAAAATGAAACCTGAGTCT+TGG | 0.544330 | 4_2:+51203313 | None:intergenic |
| AAGCCCGTCATAACCGGGAT+GGG | 0.548733 | 4_2:+51199007 | None:intergenic |
| CTTAACATTGGAGTTTGCAA+GGG | 0.559512 | 4_2:+51199570 | None:intergenic |
| GCTCTCAAACCTTTCCCTGA+TGG | 0.559523 | 4_2:-51198801 | Msa0605400:CDS |
| GTTACCACTTTGAGCCATCA+GGG | 0.562119 | 4_2:+51198787 | None:intergenic |
| CTCGAGGGTCTCCTTAACAT+TGG | 0.565730 | 4_2:+51199558 | None:intergenic |
| GTTATTGTGACCATCACTCA+TGG | 0.567499 | 4_2:+51199244 | None:intergenic |
| GCATGAAGCCCGTCATAACC+GGG | 0.579502 | 4_2:+51199002 | None:intergenic |
| CCGTCATAACCGGGATGGGA+CGG | 0.584602 | 4_2:+51199011 | None:intergenic |
| GAAGCCCGTCATAACCGGGA+TGG | 0.590516 | 4_2:+51199006 | None:intergenic |
| AGCAGAGCAAGGAAAAGACC+AGG | 0.591506 | 4_2:-51199755 | Msa0605400:CDS |
| TATTGCTGGACCCAAGACTC+AGG | 0.596949 | 4_2:-51203324 | Msa0605400:intron |
| AAGGCCTTGACAGTACCAAA+AGG | 0.598804 | 4_2:+51199688 | None:intergenic |
| AGGTGAGTGAGTTGACAGAA+AGG | 0.599718 | 4_2:-51199786 | Msa0605400:CDS |
| AATCGAGACCAACCCATCAC+AGG | 0.602173 | 4_2:+51199185 | None:intergenic |
| TGTCGCGACAAGGCTTTCCA+AGG | 0.604324 | 4_2:-51199078 | Msa0605400:CDS |
| ATGACGAACCTGTGATGGGT+TGG | 0.611315 | 4_2:-51199193 | Msa0605400:CDS |
| AGGCTTCAGCTAGCAGAGCA+AGG | 0.611488 | 4_2:-51199766 | Msa0605400:CDS |
| TTCGCCGAAGCTTATCAGGA+TGG | 0.615270 | 4_2:+51198865 | None:intergenic |
| CAGTATCAATACCATCATCC+GGG | 0.624695 | 4_2:+51199422 | None:intergenic |
| TCTTGGGTCCAGCAATAGGT+AGG | 0.625086 | 4_2:+51203330 | None:intergenic |
| GATTCATCAGGAGCAACAGT+AGG | 0.626788 | 4_2:+51199655 | None:intergenic |
| TTCACCAATATCAAGAGAGT+CGG | 0.631376 | 4_2:-51199529 | Msa0605400:CDS |
| TGGACTCAACATCCGAATCA+CGG | 0.631798 | 4_2:+51199264 | None:intergenic |
| ATTGAGCGCAGAGAAAGAGA+AGG | 0.634348 | 4_2:-51203497 | Msa0605400:CDS |
| AAAACTATGATGCATCCAGT+AGG | 0.639135 | 4_2:+51203404 | None:intergenic |
| ATCTATGACGAACCTGTGAT+GGG | 0.642865 | 4_2:-51199197 | Msa0605400:CDS |
| GCTTTCCAAGGAGAAAGCAT+GGG | 0.644753 | 4_2:-51199066 | Msa0605400:CDS |
| CTTTCCCTGATGGCTCAAAG+TGG | 0.648347 | 4_2:-51198791 | Msa0605400:CDS |
| TATTGGTGAACCAGACCTCG+AGG | 0.661264 | 4_2:+51199542 | None:intergenic |
| GATGTTGAGTCCATGAGTGA+TGG | 0.662271 | 4_2:-51199254 | Msa0605400:CDS |
| CTCGATTAGTTCATACCACG+AGG | 0.662449 | 4_2:-51199169 | Msa0605400:CDS |
| ATTGGTGAACCAGACCTCGA+GGG | 0.670776 | 4_2:+51199543 | None:intergenic |
| TCTAGTTGTTGCCTTCGACG+AGG | 0.686292 | 4_2:-51199494 | Msa0605400:CDS |
| CAATGTTAAGGAGACCCTCG+AGG | 0.715442 | 4_2:-51199557 | Msa0605400:CDS |
| AGGAACTCCAATGATTACAG+CGG | 0.716864 | 4_2:+51203424 | None:intergenic |
| ATTGTAAACCCATATCCTCG+TGG | 0.729649 | 4_2:+51199154 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAATTATTATTATAA+CGG | + | chr4_2:51200761-51200780 | None:intergenic | 0.0% |
| !! | TTAAATAATATTATAAAAAA+TGG | + | chr4_2:51201340-51201359 | None:intergenic | 0.0% |
| !!! | TTTTTTATTTTATTTTATTT+TGG | - | chr4_2:51202379-51202398 | Msa0605400:intron | 0.0% |
| !! | TTTAAGCATATTTAATTAAT+TGG | - | chr4_2:51199237-51199256 | Msa0605400:CDS | 10.0% |
| !!! | TTGATTTTAATTAAAATTGT+AGG | - | chr4_2:51199551-51199570 | Msa0605400:CDS | 10.0% |
| !!! | TAAAGATATTATATGATTTT+TGG | + | chr4_2:51199730-51199749 | None:intergenic | 10.0% |
| !! | TTGTTAATATAAAATTCAAA+TGG | + | chr4_2:51200371-51200390 | None:intergenic | 10.0% |
| !! | AAGTATTTAATTAAAGTAAA+AGG | + | chr4_2:51200628-51200647 | None:intergenic | 10.0% |
| !!! | AGTTTTTATATAAAGTAAAA+GGG | + | chr4_2:51200660-51200679 | None:intergenic | 10.0% |
| !!! | CTTATTTTAAAATAAAGTAA+AGG | + | chr4_2:51200731-51200750 | None:intergenic | 10.0% |
| !!! | TTATTTCTTATAAATAGTAT+CGG | - | chr4_2:51201140-51201159 | Msa0605400:intron | 10.0% |
| !! | TTGTATATAAAAAGATATAT+CGG | + | chr4_2:51201187-51201206 | None:intergenic | 10.0% |
| !!! | AACTTTAAAATAAATAATTG+TGG | - | chr4_2:51202094-51202113 | Msa0605400:intron | 10.0% |
| !! | CATATAATTCAATAAAAAAG+TGG | + | chr4_2:51199368-51199387 | None:intergenic | 15.0% |
| !!! | TTTAAAAACTCAAGTTTTTA+CGG | - | chr4_2:51200499-51200518 | Msa0605400:intron | 15.0% |
| !!! | GAGTTTTTATATAAAGTAAA+AGG | + | chr4_2:51200661-51200680 | None:intergenic | 15.0% |
| !!! | TAGTTTAAAACCATTAATAT+AGG | - | chr4_2:51200794-51200813 | Msa0605400:intron | 15.0% |
| !! | ATGAGTTGTTTATTATAAAT+AGG | + | chr4_2:51200915-51200934 | None:intergenic | 15.0% |
| !!! | CATTAAATAATTGATTTATC+TGG | - | chr4_2:51200945-51200964 | Msa0605400:intron | 15.0% |
| !! | ATGAGTTGTTTATTATAAAT+AGG | + | chr4_2:51200915-51200934 | None:intergenic | 15.0% |
| !!! | CATTAAATAATTGATTTATC+TGG | - | chr4_2:51200945-51200964 | Msa0605400:intron | 15.0% |
| !! | TATTATAAAAAATGGCAAAA+TGG | + | chr4_2:51201332-51201351 | None:intergenic | 15.0% |
| !! | ATAGGTAATTTATCTATAAT+TGG | + | chr4_2:51201837-51201856 | None:intergenic | 15.0% |
| !!! | ATGATATTTTAATTGGAAAA+GGG | - | chr4_2:51201884-51201903 | Msa0605400:intron | 15.0% |
| !! | TTGGAAAATAAATTGTAATA+AGG | - | chr4_2:51201920-51201939 | Msa0605400:intron | 15.0% |
| !!! | TTCAAACTTGTAATTTTATA+AGG | - | chr4_2:51201982-51202001 | Msa0605400:intron | 15.0% |
| !!! | TTATTTTATTTTATTTTGGC+AGG | - | chr4_2:51202383-51202402 | Msa0605400:intron | 15.0% |
| !!! | AACTATACTTATCTTTTTCA+AGG | - | chr4_2:51199592-51199611 | Msa0605400:CDS | 20.0% |
| !! | TATATTATATGCTATATCGT+TGG | + | chr4_2:51199621-51199640 | None:intergenic | 20.0% |
| !!! | AGTTTGTTTAAGGATATAAT+CGG | - | chr4_2:51199689-51199708 | Msa0605400:CDS | 20.0% |
| !!! | TTCATATTTTTACTCATTCA+CGG | - | chr4_2:51200317-51200336 | Msa0605400:intron | 20.0% |
| !!! | ATGTGACATATTTTAAAAGA+TGG | - | chr4_2:51200397-51200416 | Msa0605400:intron | 20.0% |
| !! | CATGTGATAATTAATTCATT+TGG | + | chr4_2:51200451-51200470 | None:intergenic | 20.0% |
| !!! | TTAAAAACTCAAGTTTTTAC+GGG | - | chr4_2:51200500-51200519 | Msa0605400:intron | 20.0% |
| !! | TTGTTTATTATAAATAGGAC+CGG | + | chr4_2:51200910-51200929 | None:intergenic | 20.0% |
| !! | TTGTTTATTATAAATAGGAC+CGG | + | chr4_2:51200910-51200929 | None:intergenic | 20.0% |
| !!! | ATAAAAAGATATATCGGTTT+TGG | + | chr4_2:51201181-51201200 | None:intergenic | 20.0% |
| !! | CACAAAAATAGGAATAAAAT+TGG | - | chr4_2:51201429-51201448 | Msa0605400:intron | 20.0% |
| !! | GTAAAAAGTAATTAAGTCTA+GGG | + | chr4_2:51201534-51201553 | None:intergenic | 20.0% |
| !! | AAATTTAGTGCAACATATAA+AGG | - | chr4_2:51201858-51201877 | Msa0605400:intron | 20.0% |
| !! | AATTTAGTGCAACATATAAA+GGG | - | chr4_2:51201859-51201878 | Msa0605400:intron | 20.0% |
| !!! | GATGATATTTTAATTGGAAA+AGG | - | chr4_2:51201883-51201902 | Msa0605400:intron | 20.0% |
| !!! | AAAGGGAATGATATTTTAAT+TGG | - | chr4_2:51201901-51201920 | Msa0605400:intron | 20.0% |
| !!! | TGAAGAAAGGTATTATAAAA+TGG | + | chr4_2:51202186-51202205 | None:intergenic | 20.0% |
| !!! | TTGTTGATTATTATGTCAAT+GGG | - | chr4_2:51203455-51203474 | Msa0605400:CDS | 20.0% |
| ! | TGAGAAACAAAGAATTCATT+AGG | + | chr4_2:51198917-51198936 | None:intergenic | 25.0% |
| ! | CAAGAAAGATAGTTAATCTT+TGG | + | chr4_2:51199001-51199020 | None:intergenic | 25.0% |
| !! | TTTTACTTTACTACATGATG+TGG | - | chr4_2:51199163-51199182 | Msa0605400:CDS | 25.0% |
| ! | TTTACTTTACTACATGATGT+GGG | - | chr4_2:51199164-51199183 | Msa0605400:CDS | 25.0% |
| ! | TTGGATAATCCAAATTCTAT+TGG | - | chr4_2:51199256-51199275 | Msa0605400:CDS | 25.0% |
| ! | TGGATAATCCAAATTCTATT+GGG | - | chr4_2:51199257-51199276 | Msa0605400:CDS | 25.0% |
| !!! | GAAAGTTGGTAATACTATTA+TGG | + | chr4_2:51199326-51199345 | None:intergenic | 25.0% |
| ! | TCAATAAAAAAGTGGACAAA+CGG | + | chr4_2:51199360-51199379 | None:intergenic | 25.0% |
| !!! | AATGGATTACTATGAGAAAT+GGG | + | chr4_2:51200353-51200372 | None:intergenic | 25.0% |
| !!! | AAATGGATTACTATGAGAAA+TGG | + | chr4_2:51200354-51200373 | None:intergenic | 25.0% |
| !!! | ATATACTGTTTCTATTGTAG+TGG | + | chr4_2:51200827-51200846 | None:intergenic | 25.0% |
| ! | CATTGAATAATTGATGTATC+TGG | + | chr4_2:51201105-51201124 | None:intergenic | 25.0% |
| !! | TTCTTATAAATAGTATCGGA+AGG | - | chr4_2:51201144-51201163 | Msa0605400:intron | 25.0% |
| ! | GCAGTAGAAAATCAAATAAA+CGG | - | chr4_2:51201213-51201232 | Msa0605400:intron | 25.0% |
| ! | TTGACGGTTCATATATTAAT+GGG | + | chr4_2:51201389-51201408 | None:intergenic | 25.0% |
| ! | AATGAACAATGCACAAAAAT+AGG | - | chr4_2:51201418-51201437 | Msa0605400:intron | 25.0% |
| ! | GGGTAAAATTGAAAGAAAAA+TGG | + | chr4_2:51201514-51201533 | None:intergenic | 25.0% |
| ! | GGTAAAAAGTAATTAAGTCT+AGG | + | chr4_2:51201535-51201554 | None:intergenic | 25.0% |
| ! | TTAAGACATGCACATTAAAA+TGG | + | chr4_2:51201556-51201575 | None:intergenic | 25.0% |
| ! | GGTAATTTATCTATAATTGG+TGG | + | chr4_2:51201834-51201853 | None:intergenic | 25.0% |
| ! | TATGTTGCACTAAATTTGAT+AGG | + | chr4_2:51201855-51201874 | None:intergenic | 25.0% |
| !!! | AAGGGAGATGATATTTTAAT+TGG | - | chr4_2:51201877-51201896 | Msa0605400:intron | 25.0% |
| !! | AGTTTGAAGTTAGAGAATTT+CGG | + | chr4_2:51201970-51201989 | None:intergenic | 25.0% |
| !!! | ATCTTGATAATGATGAAGAA+AGG | + | chr4_2:51202199-51202218 | None:intergenic | 25.0% |
| ! | TGAGAAACTAATAAGTCATT+GGG | + | chr4_2:51202355-51202374 | None:intergenic | 25.0% |
| ! | TTGAGAAACTAATAAGTCAT+TGG | + | chr4_2:51202356-51202375 | None:intergenic | 25.0% |
| ! | CATGTTAAAATCAGAATTTG+TGG | - | chr4_2:51202443-51202462 | Msa0605400:intron | 25.0% |
| ! | TCTAATATATTTGCCAATCT+CGG | + | chr4_2:51202666-51202685 | None:intergenic | 25.0% |
| ! | TATTGATACTGTTGGAAAAA+AGG | - | chr4_2:51202878-51202897 | Msa0605400:intron | 25.0% |
| ! | AAAGAGTTCTTCATTGAAAA+CGG | + | chr4_2:51203254-51203273 | None:intergenic | 25.0% |
| ! | TAACCTCAGTAAATTAAAAC+CGG | - | chr4_2:51203381-51203400 | Msa0605400:CDS | 25.0% |
| ! | TAATTCACGTGAATAATTAC+CGG | + | chr4_2:51203403-51203422 | None:intergenic | 25.0% |
| !! | GTTGTTGATTATTATGTCAA+TGG | - | chr4_2:51203454-51203473 | Msa0605400:CDS | 25.0% |
| TTGATATCAGTAGAGATTGA+GGG | + | chr4_2:51198835-51198854 | None:intergenic | 30.0% | |
| ATGATTCACCCAATAGAATT+TGG | + | chr4_2:51199268-51199287 | None:intergenic | 30.0% | |
| TCAACAAATAGCATTCGTAT+AGG | - | chr4_2:51199664-51199683 | Msa0605400:CDS | 30.0% | |
| TTGTTGTACTTGCAAAAGTA+CGG | - | chr4_2:51199757-51199776 | Msa0605400:CDS | 30.0% | |
| AAAGTACGGTAATAGAATCT+AGG | - | chr4_2:51199771-51199790 | Msa0605400:CDS | 30.0% | |
| TTACTTAGGCAGTAAGTAAT+AGG | - | chr4_2:51199871-51199890 | Msa0605400:CDS | 30.0% | |
| TACTTAGGCAGTAAGTAATA+GGG | - | chr4_2:51199872-51199891 | Msa0605400:CDS | 30.0% | |
| CAGTTGTTTAAGGATATGAT+CGG | - | chr4_2:51200060-51200079 | Msa0605400:intron | 30.0% | |
| TGATCGGAAGTAAAAAAACT+CGG | - | chr4_2:51200076-51200095 | Msa0605400:intron | 30.0% | |
| AACAAGCTAACTCAATTGTT+TGG | + | chr4_2:51200159-51200178 | None:intergenic | 30.0% | |
| ! | TTTTTACTCATTCACGGAAT+TGG | - | chr4_2:51200323-51200342 | Msa0605400:intron | 30.0% |
| ! | GGGGTATGATAAAATCTTTT+TGG | + | chr4_2:51200885-51200904 | None:intergenic | 30.0% |
| TTATTATAAATAGGACCGGA+GGG | + | chr4_2:51200906-51200925 | None:intergenic | 30.0% | |
| TTTATTATAAATAGGACCGG+AGG | + | chr4_2:51200907-51200926 | None:intergenic | 30.0% | |
| ! | GGGGTATGATAAAATCTTTT+TGG | + | chr4_2:51200885-51200904 | None:intergenic | 30.0% |
| TTATTATAAATAGGACCGGA+GGG | + | chr4_2:51200906-51200925 | None:intergenic | 30.0% | |
| TTTATTATAAATAGGACCGG+AGG | + | chr4_2:51200907-51200926 | None:intergenic | 30.0% | |
| CAAGTTAATGTTCATCCTTA+CGG | - | chr4_2:51201238-51201257 | Msa0605400:intron | 30.0% | |
| !! | TTACGGTAGTAGCTTTAAAT+GGG | - | chr4_2:51201255-51201274 | Msa0605400:intron | 30.0% |
| TGGCAAAATGGTTTAAATGA+AGG | + | chr4_2:51201320-51201339 | None:intergenic | 30.0% | |
| TGACGGTTCATATATTAATG+GGG | + | chr4_2:51201388-51201407 | None:intergenic | 30.0% | |
| GTTGACGGTTCATATATTAA+TGG | + | chr4_2:51201390-51201409 | None:intergenic | 30.0% | |
| ! | GTTCATTTCATTGTTGTTGA+CGG | + | chr4_2:51201405-51201424 | None:intergenic | 30.0% |
| AATGCCAGTAGTATATTGTA+AGG | - | chr4_2:51201574-51201593 | Msa0605400:intron | 30.0% | |
| ATGCCAGTAGTATATTGTAA+GGG | - | chr4_2:51201575-51201594 | Msa0605400:intron | 30.0% | |
| CAATGTTGTTCTTATTGTTG+CGG | + | chr4_2:51201674-51201693 | None:intergenic | 30.0% | |
| ATCTATAATTGGTGGAAAGA+TGG | + | chr4_2:51201826-51201845 | None:intergenic | 30.0% | |
| CATTATCAAGATTATGTGAG+AGG | - | chr4_2:51202207-51202226 | Msa0605400:intron | 30.0% | |
| TAACTCAATCAAAGTCGTAA+TGG | - | chr4_2:51202234-51202253 | Msa0605400:intron | 30.0% | |
| !!! | AACTCTGATTTTCGAGTTAT+GGG | + | chr4_2:51202300-51202319 | None:intergenic | 30.0% |
| TCGAAAATCAGAGTTCTTAT+AGG | - | chr4_2:51202305-51202324 | Msa0605400:intron | 30.0% | |
| GAGAAACTAATAAGTCATTG+GGG | + | chr4_2:51202354-51202373 | None:intergenic | 30.0% | |
| AAATGAACAGCTGAAAAAAC+AGG | - | chr4_2:51202482-51202501 | Msa0605400:intron | 30.0% | |
| GAAAAAATGCTTCTTGCATT+AGG | - | chr4_2:51202558-51202577 | Msa0605400:intron | 30.0% | |
| CTAATATATTTGCCAATCTC+GGG | + | chr4_2:51202665-51202684 | None:intergenic | 30.0% | |
| AAGGCAACAACTAGATAATT+AGG | + | chr4_2:51202789-51202808 | None:intergenic | 30.0% | |
| ! | TCTAAGAGAATTTTTGCAGT+TGG | - | chr4_2:51202937-51202956 | Msa0605400:intron | 30.0% |
| ! | CTAAGAGAATTTTTGCAGTT+GGG | - | chr4_2:51202938-51202957 | Msa0605400:intron | 30.0% |
| ! | TCATGCTTCTAAAAGAACTA+TGG | - | chr4_2:51203303-51203322 | Msa0605400:intron | 30.0% |
| !! | AAGTTCTTTTCAAGACAGTA+AGG | - | chr4_2:51203350-51203369 | Msa0605400:CDS | 30.0% |
| !!! | TTACCGGTTTTAATTTACTG+AGG | + | chr4_2:51203387-51203406 | None:intergenic | 30.0% |
| CTTGATATCAGTAGAGATTG+AGG | + | chr4_2:51198836-51198855 | None:intergenic | 35.0% | |
| CTCAATCTCTACTGATATCA+AGG | - | chr4_2:51198834-51198853 | Msa0605400:CDS | 35.0% | |
| AAAACTATGATGCATCCAGT+AGG | + | chr4_2:51198887-51198906 | None:intergenic | 35.0% | |
| GAAAATGAAACCTGAGTCTT+GGG | + | chr4_2:51198977-51198996 | None:intergenic | 35.0% | |
| TGAAAATGAAACCTGAGTCT+TGG | + | chr4_2:51198978-51198997 | None:intergenic | 35.0% | |
| ! | CGTATAGGCAAGTTTGTTTA+AGG | - | chr4_2:51199679-51199698 | Msa0605400:CDS | 35.0% |
| GATTTAGACTGCTTATCTGA+TGG | - | chr4_2:51199793-51199812 | Msa0605400:CDS | 35.0% | |
| ACTTAGGCAGTAAGTAATAG+GGG | - | chr4_2:51199873-51199892 | Msa0605400:CDS | 35.0% | |
| !!! | AGTAAGTAATAGGGGTGTTT+TGG | - | chr4_2:51199881-51199900 | Msa0605400:CDS | 35.0% |
| !!! | GTAAGTAATAGGGGTGTTTT+GGG | - | chr4_2:51199882-51199901 | Msa0605400:CDS | 35.0% |
| ! | TTCCTAAAAGACCTCTGAAA+GGG | + | chr4_2:51200027-51200046 | None:intergenic | 35.0% |
| ATTCCTAAAAGACCTCTGAA+AGG | + | chr4_2:51200028-51200047 | None:intergenic | 35.0% | |
| ATTGACAGTCCAGTTGTTTA+AGG | - | chr4_2:51200050-51200069 | Msa0605400:intron | 35.0% | |
| CGATCATATCCTTAAACAAC+TGG | + | chr4_2:51200062-51200081 | None:intergenic | 35.0% | |
| ! | CACCAAATGACGAATCTTTT+GGG | - | chr4_2:51200188-51200207 | Msa0605400:intron | 35.0% |
| !!! | GAATCTTTTGGGACAAACTT+TGG | - | chr4_2:51200199-51200218 | Msa0605400:intron | 35.0% |
| TGGTGCTCTTCCTATATTAA+TGG | + | chr4_2:51200807-51200826 | None:intergenic | 35.0% | |
| TATTATAAATAGGACCGGAG+GGG | + | chr4_2:51200905-51200924 | None:intergenic | 35.0% | |
| TATTATAAATAGGACCGGAG+GGG | + | chr4_2:51200905-51200924 | None:intergenic | 35.0% | |
| ! | CATTTAAAGCTACTACCGTA+AGG | + | chr4_2:51201256-51201275 | None:intergenic | 35.0% |
| !! | CTTACGGTAGTAGCTTTAAA+TGG | - | chr4_2:51201254-51201273 | Msa0605400:intron | 35.0% |
| ACACAAAATTCTGCCCAAAA+GGG | + | chr4_2:51201286-51201305 | None:intergenic | 35.0% | |
| AACACAAAATTCTGCCCAAA+AGG | + | chr4_2:51201287-51201306 | None:intergenic | 35.0% | |
| TGCCAGTAGTATATTGTAAG+GGG | - | chr4_2:51201576-51201595 | Msa0605400:intron | 35.0% | |
| !! | GCGGATTGTTTCTATTTCAA+TGG | + | chr4_2:51201655-51201674 | None:intergenic | 35.0% |
| CGCAACAATAAGAACAACAT+TGG | - | chr4_2:51201672-51201691 | Msa0605400:intron | 35.0% | |
| !!! | GTTATGGGGTTTTGAAGATT+TGG | + | chr4_2:51202285-51202304 | None:intergenic | 35.0% |
| !!! | ACTCTGATTTTCGAGTTATG+GGG | + | chr4_2:51202299-51202318 | None:intergenic | 35.0% |
| !!! | GAACTCTGATTTTCGAGTTA+TGG | + | chr4_2:51202301-51202320 | None:intergenic | 35.0% |
| TTAGGTAAACAGGAAAAAGC+TGG | - | chr4_2:51202576-51202595 | Msa0605400:intron | 35.0% | |
| !! | AACAGTAGGATTGGTTCTTA+AGG | + | chr4_2:51202622-51202641 | None:intergenic | 35.0% |
| CTTAACATTGGAGTTTGCAA+GGG | + | chr4_2:51202721-51202740 | None:intergenic | 35.0% | |
| TTCACCAATATCAAGAGAGT+CGG | - | chr4_2:51202759-51202778 | Msa0605400:intron | 35.0% | |
| !! | TATACCGACTCTCTTGATAT+TGG | + | chr4_2:51202766-51202785 | None:intergenic | 35.0% |
| ACAGTATCAATACCATCATC+CGG | + | chr4_2:51202870-51202889 | None:intergenic | 35.0% | |
| !! | GATGATGGTATTGATACTGT+TGG | - | chr4_2:51202870-51202889 | Msa0605400:intron | 35.0% |
| TGATACTGTTGGAAAAAAGG+AGG | - | chr4_2:51202881-51202900 | Msa0605400:intron | 35.0% | |
| GATACTGTTGGAAAAAAGGA+GGG | - | chr4_2:51202882-51202901 | Msa0605400:intron | 35.0% | |
| TCACGGTATAGATGATCAAA+AGG | + | chr4_2:51203010-51203029 | None:intergenic | 35.0% | |
| TGATCATCTATACCGTGATT+CGG | - | chr4_2:51203012-51203031 | Msa0605400:intron | 35.0% | |
| CACAATAACATGACAGCTTA+TGG | - | chr4_2:51203058-51203077 | Msa0605400:intron | 35.0% | |
| AGGATATGGGTTTACAATTC+TGG | - | chr4_2:51203139-51203158 | Msa0605400:intron | 35.0% | |
| CAAAAGCTCAATTGAAGGAA+TGG | + | chr4_2:51203185-51203204 | None:intergenic | 35.0% | |
| ! | CATTCCTTCAATTGAGCTTT+TGG | - | chr4_2:51203183-51203202 | Msa0605400:intron | 35.0% |
| ATTACCATCCTGATAAGCTT+CGG | - | chr4_2:51203419-51203438 | Msa0605400:CDS | 35.0% | |
| TGAGGGTTGTTCTTCATCAA+AGG | + | chr4_2:51198818-51198837 | None:intergenic | 40.0% | |
| ATCATTGCCGCTGTAATCAT+TGG | - | chr4_2:51198857-51198876 | Msa0605400:CDS | 40.0% | |
| AGGAACTCCAATGATTACAG+CGG | + | chr4_2:51198867-51198886 | None:intergenic | 40.0% | |
| GTAATCATTGGAGTTCCTAC+TGG | - | chr4_2:51198869-51198888 | Msa0605400:CDS | 40.0% | |
| AATAGGTAGGTGACGATTTG+AGG | + | chr4_2:51198948-51198967 | None:intergenic | 40.0% | |
| AAAAAGTGGACAAACGGACA+CGG | + | chr4_2:51199354-51199373 | None:intergenic | 40.0% | |
| ! | AGCCTGATTTGTCGTTACTT+AGG | - | chr4_2:51199857-51199876 | Msa0605400:CDS | 40.0% |
| TGCCTAAGTAACGACAAATC+AGG | + | chr4_2:51199862-51199881 | None:intergenic | 40.0% | |
| !!! | TAGGGGTGTTTTGGGTATTT+AGG | - | chr4_2:51199890-51199909 | Msa0605400:intron | 40.0% |
| CCAAAAGATTCGTCATTTGG+TGG | + | chr4_2:51200190-51200209 | None:intergenic | 40.0% | |
| ! | CCACCAAATGACGAATCTTT+TGG | - | chr4_2:51200187-51200206 | Msa0605400:intron | 40.0% |
| GTCCCAAAAGATTCGTCATT+TGG | + | chr4_2:51200193-51200212 | None:intergenic | 40.0% | |
| GTGTTAAGACTTCGACTTTC+AGG | + | chr4_2:51200244-51200263 | None:intergenic | 40.0% | |
| ! | AGATTTTATCATACCCCCTC+CGG | - | chr4_2:51200888-51200907 | Msa0605400:intron | 40.0% |
| ATTATAAATAGGACCGGAGG+GGG | + | chr4_2:51200904-51200923 | None:intergenic | 40.0% | |
| ! | AGATTTTATCATACCCCCTC+CGG | - | chr4_2:51200888-51200907 | Msa0605400:intron | 40.0% |
| ATTATAAATAGGACCGGAGG+GGG | + | chr4_2:51200904-51200923 | None:intergenic | 40.0% | |
| ! | TTAAATGGGACACACCCTTT+TGG | - | chr4_2:51201269-51201288 | Msa0605400:intron | 40.0% |
| ! | TAAATGGGACACACCCTTTT+GGG | - | chr4_2:51201270-51201289 | Msa0605400:intron | 40.0% |
| GCCAGTAGTATATTGTAAGG+GGG | - | chr4_2:51201577-51201596 | Msa0605400:intron | 40.0% | |
| ACCCCCTTACAATATACTAC+TGG | + | chr4_2:51201581-51201600 | None:intergenic | 40.0% | |
| !!! | CAAGAAGCATTTTTTCTGCC+TGG | + | chr4_2:51202554-51202573 | None:intergenic | 40.0% |
| GCTTCTTGCATTAGGTAAAC+AGG | - | chr4_2:51202566-51202585 | Msa0605400:intron | 40.0% | |
| CCTTAACATTGGAGTTTGCA+AGG | + | chr4_2:51202722-51202741 | None:intergenic | 40.0% | |
| CCTTGCAAACTCCAATGTTA+AGG | - | chr4_2:51202719-51202738 | Msa0605400:intron | 40.0% | |
| !! | CTTTGAAATTTCCTCGTCGA+AGG | + | chr4_2:51202808-51202827 | None:intergenic | 40.0% |
| ! | CCGGGTCTCTTTTGTAAAAT+GGG | + | chr4_2:51202851-51202870 | None:intergenic | 40.0% |
| ! | CCCATTTTACAAAAGAGACC+CGG | - | chr4_2:51202848-51202867 | Msa0605400:intron | 40.0% |
| ! | TCCGGGTCTCTTTTGTAAAA+TGG | + | chr4_2:51202852-51202871 | None:intergenic | 40.0% |
| CAGTATCAATACCATCATCC+GGG | + | chr4_2:51202869-51202888 | None:intergenic | 40.0% | |
| GTTATTGTGACCATCACTCA+TGG | + | chr4_2:51203047-51203066 | None:intergenic | 40.0% | |
| TATCTATGACGAACCTGTGA+TGG | - | chr4_2:51203090-51203109 | Msa0605400:intron | 40.0% | |
| ATCTATGACGAACCTGTGAT+GGG | - | chr4_2:51203091-51203110 | Msa0605400:intron | 40.0% | |
| TAGTTCATACCACGAGGATA+TGG | - | chr4_2:51203125-51203144 | Msa0605400:intron | 40.0% | |
| AGTTCATACCACGAGGATAT+GGG | - | chr4_2:51203126-51203145 | Msa0605400:intron | 40.0% | |
| ATTGTAAACCCATATCCTCG+TGG | + | chr4_2:51203137-51203156 | None:intergenic | 40.0% | |
| AGCTCAATTGAAGGAATGGT+TGG | + | chr4_2:51203181-51203200 | None:intergenic | 40.0% | |
| CGATCCAAAAGCTCAATTGA+AGG | + | chr4_2:51203190-51203209 | None:intergenic | 40.0% | |
| GTTCTTCATTGAAAACGGCT+TGG | + | chr4_2:51203249-51203268 | None:intergenic | 40.0% | |
| ATTGAGCGCAGAGAAAGAGA+AGG | - | chr4_2:51198791-51198810 | Msa0605400:CDS | 45.0% | |
| AATCGTCACCTACCTATTGC+TGG | - | chr4_2:51198950-51198969 | Msa0605400:CDS | 45.0% | |
| CTACATGATGTGGGTCATTG+AGG | - | chr4_2:51199173-51199192 | Msa0605400:CDS | 45.0% | |
| GCTTATCTGATGGCTTGAGA+AGG | - | chr4_2:51199803-51199822 | Msa0605400:CDS | 45.0% | |
| CGACAAATCAGGCTCATAGA+GGG | + | chr4_2:51199851-51199870 | None:intergenic | 45.0% | |
| ACGACAAATCAGGCTCATAG+AGG | + | chr4_2:51199852-51199871 | None:intergenic | 45.0% | |
| GGTATTTAGGCGCGTTCTAA+AGG | - | chr4_2:51199903-51199922 | Msa0605400:intron | 45.0% | |
| AGCCTTAGCGCCTCTTAAAA+GGG | + | chr4_2:51199986-51200005 | None:intergenic | 45.0% | |
| AAGCCTTAGCGCCTCTTAAA+AGG | + | chr4_2:51199987-51200006 | None:intergenic | 45.0% | |
| ! | AGCCCTTTCAGAGGTCTTTT+AGG | - | chr4_2:51200022-51200041 | Msa0605400:intron | 45.0% |
| ! | CTTTCAGGTGAATGAGACTC+TGG | + | chr4_2:51200229-51200248 | None:intergenic | 45.0% |
| ! | AGGTGAGTGAGTTGACAGAA+AGG | - | chr4_2:51202502-51202521 | Msa0605400:intron | 45.0% |
| ! | CAGGAAAAAGCTGGACCTTT+TGG | - | chr4_2:51202585-51202604 | Msa0605400:intron | 45.0% |
| ! | TGGACCTTTTGGTACTGTCA+AGG | - | chr4_2:51202596-51202615 | Msa0605400:intron | 45.0% |
| AAGGCCTTGACAGTACCAAA+AGG | + | chr4_2:51202603-51202622 | None:intergenic | 45.0% | |
| ATCAGGAGCAACAGTAGGAT+TGG | + | chr4_2:51202631-51202650 | None:intergenic | 45.0% | |
| GATTCATCAGGAGCAACAGT+AGG | + | chr4_2:51202636-51202655 | None:intergenic | 45.0% | |
| ATTTGCCAATCTCGGGTTCA+CGG | + | chr4_2:51202658-51202677 | None:intergenic | 45.0% | |
| TACAAAAGAGACCCGGATGA+TGG | - | chr4_2:51202855-51202874 | Msa0605400:intron | 45.0% | |
| TGGACTCAACATCCGAATCA+CGG | + | chr4_2:51203027-51203046 | None:intergenic | 45.0% | |
| GATGTTGAGTCCATGAGTGA+TGG | - | chr4_2:51203034-51203053 | Msa0605400:intron | 45.0% | |
| ! | CTCGATTAGTTCATACCACG+AGG | - | chr4_2:51203119-51203138 | Msa0605400:intron | 45.0% |
| ! | GCTTTCCAAGGAGAAAGCAT+GGG | - | chr4_2:51203222-51203241 | Msa0605400:intron | 45.0% |
| TTCATTCGCCGAAGCTTATC+AGG | + | chr4_2:51203430-51203449 | None:intergenic | 45.0% | |
| !! | GGAAAGGTTTGAGAGCATCT+TGG | + | chr4_2:51203483-51203502 | None:intergenic | 45.0% |
| !! | TAAAATCAAATTTATAAAAA+GGG | + | chr4_2:51199519-51199538 | None:intergenic | 5.0% |
| !! | TTAAAATCAAATTTATAAAA+AGG | + | chr4_2:51199520-51199539 | None:intergenic | 5.0% |
| !!! | TTATTTTAAAATAAAGTAAA+GGG | + | chr4_2:51200730-51200749 | None:intergenic | 5.0% |
| TCTTGGGTCCAGCAATAGGT+AGG | + | chr4_2:51198961-51198980 | None:intergenic | 50.0% | |
| TGAGTCTTGGGTCCAGCAAT+AGG | + | chr4_2:51198965-51198984 | None:intergenic | 50.0% | |
| TATTGCTGGACCCAAGACTC+AGG | - | chr4_2:51198964-51198983 | Msa0605400:CDS | 50.0% | |
| AGGCTTCAAGAAGCGAGTAG+AGG | - | chr4_2:51199923-51199942 | Msa0605400:intron | 50.0% | |
| CTTCAAGAAGCGAGTAGAGG+CGG | - | chr4_2:51199926-51199945 | Msa0605400:intron | 50.0% | |
| TAAAAGGGCCATGAGGCTCA+AGG | + | chr4_2:51199971-51199990 | None:intergenic | 50.0% | |
| ! | AGCCTCATGGCCCTTTTAAG+AGG | - | chr4_2:51199973-51199992 | Msa0605400:intron | 50.0% |
| ! | AGGCGCTAAGGCTTCTGAAA+GGG | - | chr4_2:51199993-51200012 | Msa0605400:intron | 50.0% |
| GGGTCTAAAAGCCCTTTCAG+AGG | - | chr4_2:51200013-51200032 | Msa0605400:intron | 50.0% | |
| AGCAGAGCAAGGAAAAGACC+AGG | - | chr4_2:51202533-51202552 | Msa0605400:intron | 50.0% | |
| TGAATCCGTGAACCCGAGAT+TGG | - | chr4_2:51202650-51202669 | Msa0605400:intron | 50.0% | |
| CTCGAGGGTCTCCTTAACAT+TGG | + | chr4_2:51202733-51202752 | None:intergenic | 50.0% | |
| CAATGTTAAGGAGACCCTCG+AGG | - | chr4_2:51202731-51202750 | Msa0605400:intron | 50.0% | |
| ATTGGTGAACCAGACCTCGA+GGG | + | chr4_2:51202748-51202767 | None:intergenic | 50.0% | |
| TATTGGTGAACCAGACCTCG+AGG | + | chr4_2:51202749-51202768 | None:intergenic | 50.0% | |
| TCTAGTTGTTGCCTTCGACG+AGG | - | chr4_2:51202794-51202813 | Msa0605400:intron | 50.0% | |
| !! | ATGACGAACCTGTGATGGGT+TGG | - | chr4_2:51203095-51203114 | Msa0605400:intron | 50.0% |
| AATCGAGACCAACCCATCAC+AGG | + | chr4_2:51203106-51203125 | None:intergenic | 50.0% | |
| ! | TTTTGGATCGTGTCGCGACA+AGG | - | chr4_2:51203200-51203219 | Msa0605400:intron | 50.0% |
| GGCTTTCCAAGGAGAAAGCA+TGG | - | chr4_2:51203221-51203240 | Msa0605400:intron | 50.0% | |
| TTGGTCCCATGCTTTCTCCT+TGG | + | chr4_2:51203230-51203249 | None:intergenic | 50.0% | |
| ! | CTCTTTTATCCGTCCCATCC+CGG | - | chr4_2:51203268-51203287 | Msa0605400:intron | 50.0% |
| AGCATGAAGCCCGTCATAAC+CGG | + | chr4_2:51203290-51203309 | None:intergenic | 50.0% | |
| TTCGCCGAAGCTTATCAGGA+TGG | + | chr4_2:51203426-51203445 | None:intergenic | 50.0% | |
| GCTCTCAAACCTTTCCCTGA+TGG | - | chr4_2:51203487-51203506 | Msa0605400:CDS | 50.0% | |
| CACTTTGAGCCATCAGGGAA+AGG | + | chr4_2:51203499-51203518 | None:intergenic | 50.0% | |
| CTTTCCCTGATGGCTCAAAG+TGG | - | chr4_2:51203497-51203516 | Msa0605400:CDS | 50.0% | |
| CGGACACGGAGTGTGAAAGT+TGG | + | chr4_2:51199340-51199359 | None:intergenic | 55.0% | |
| CGCCTCTTAAAAGGGCCATG+AGG | + | chr4_2:51199978-51199997 | None:intergenic | 55.0% | |
| !!! | GGCCCTTTTAAGAGGCGCTA+AGG | - | chr4_2:51199981-51200000 | Msa0605400:intron | 55.0% |
| ! | GAGGCGCTAAGGCTTCTGAA+AGG | - | chr4_2:51199992-51200011 | Msa0605400:intron | 55.0% |
| AGGCTTCAGCTAGCAGAGCA+AGG | - | chr4_2:51202522-51202541 | Msa0605400:intron | 55.0% | |
| CTCGGGTTCACGGATTCATC+AGG | + | chr4_2:51202648-51202667 | None:intergenic | 55.0% | |
| TTAAGGAGACCCTCGAGGTC+TGG | - | chr4_2:51202736-51202755 | Msa0605400:intron | 55.0% | |
| TGTCGCGACAAGGCTTTCCA+AGG | - | chr4_2:51203210-51203229 | Msa0605400:intron | 55.0% | |
| AAGCCCGTCATAACCGGGAT+GGG | + | chr4_2:51203284-51203303 | None:intergenic | 55.0% | |
| GCATGAAGCCCGTCATAACC+GGG | + | chr4_2:51203289-51203308 | None:intergenic | 55.0% | |
| ! | AGCGAGTAGAGGCGGTGTCA+TGG | - | chr4_2:51199934-51199953 | Msa0605400:intron | 60.0% |
| !! | GCGAGTAGAGGCGGTGTCAT+GGG | - | chr4_2:51199935-51199954 | Msa0605400:intron | 60.0% |
| !! | CGAGTAGAGGCGGTGTCATG+GGG | - | chr4_2:51199936-51199955 | Msa0605400:intron | 60.0% |
| GAGGGAGAGCAGCTGTCTCT+GGG | - | chr4_2:51202900-51202919 | Msa0605400:intron | 60.0% | |
| CCGTCATAACCGGGATGGGA+CGG | + | chr4_2:51203280-51203299 | None:intergenic | 60.0% | |
| CCGTCCCATCCCGGTTATGA+CGG | - | chr4_2:51203277-51203296 | Msa0605400:intron | 60.0% | |
| CGTCCCATCCCGGTTATGAC+GGG | - | chr4_2:51203278-51203297 | Msa0605400:intron | 60.0% | |
| GAAGCCCGTCATAACCGGGA+TGG | + | chr4_2:51203285-51203304 | None:intergenic | 60.0% | |
| !! | GTAGAGGCGGTGTCATGGGG+AGG | - | chr4_2:51199939-51199958 | Msa0605400:intron | 65.0% |
| GGAACGCGCCTTGAGCCTCA+TGG | - | chr4_2:51199960-51199979 | Msa0605400:intron | 65.0% | |
| GGAGGGAGAGCAGCTGTCTC+TGG | - | chr4_2:51202899-51202918 | Msa0605400:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 51198788 | 51203522 | 51198788 | ID=Msa0605400;Name=Msa0605400 |
| chr4_2 | mRNA | 51198788 | 51203522 | 51198788 | ID=Msa0605400-mRNA-1;Parent=Msa0605400;Name=Msa0605400-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|3|0|403 |
| chr4_2 | exon | 51203325 | 51203522 | 51203325 | ID=Msa0605400-mRNA-1:exon:12253;Parent=Msa0605400-mRNA-1 |
| chr4_2 | exon | 51199434 | 51199905 | 51199434 | ID=Msa0605400-mRNA-1:exon:12252;Parent=Msa0605400-mRNA-1 |
| chr4_2 | exon | 51198788 | 51199329 | 51198788 | ID=Msa0605400-mRNA-1:exon:12251;Parent=Msa0605400-mRNA-1 |
| chr4_2 | CDS | 51203325 | 51203522 | 51203325 | ID=Msa0605400-mRNA-1:cds;Parent=Msa0605400-mRNA-1 |
| chr4_2 | CDS | 51199434 | 51199905 | 51199434 | ID=Msa0605400-mRNA-1:cds;Parent=Msa0605400-mRNA-1 |
| chr4_2 | CDS | 51198788 | 51199329 | 51198788 | ID=Msa0605400-mRNA-1:cds;Parent=Msa0605400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
