Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1335100 | XP_013460218.2 | 96.267 | 375 | 14 | 0 | 1 | 375 | 3 | 377 | 0.0 | 759 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1335100 | sp|Q6PQJ9|5BPOR_DIGLA | 38.903 | 383 | 210 | 10 | 3 | 375 | 21 | 389 | 1.05e-81 | 257 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1335100 | A0A396IXH1 | 96.267 | 375 | 14 | 0 | 1 | 375 | 3 | 377 | 0.0 | 759 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004590 | Msa1335100 | 0.802271 | 6.072118e-49 | -8.615850e-47 |
Msa0010150 | Msa1335100 | 0.805519 | 1.283459e-49 | -8.615850e-47 |
Msa0013040 | Msa1335100 | 0.817998 | 2.465079e-52 | -8.615850e-47 |
Msa0013270 | Msa1335100 | 0.802063 | 6.702771e-49 | -8.615850e-47 |
Msa0014590 | Msa1335100 | 0.818343 | 2.059687e-52 | -8.615850e-47 |
Msa0017710 | Msa1335100 | 0.806545 | 7.809999e-50 | -8.615850e-47 |
Msa0045810 | Msa1335100 | 0.802348 | 5.856127e-49 | -8.615850e-47 |
Msa0046200 | Msa1335100 | 0.810343 | 1.208200e-50 | -8.615850e-47 |
Msa0057860 | Msa1335100 | 0.803070 | 4.154405e-49 | -8.615850e-47 |
Msa0062010 | Msa1335100 | 0.830457 | 2.904930e-55 | -8.615850e-47 |
Msa0063540 | Msa1335100 | 0.826627 | 2.445622e-54 | -8.615850e-47 |
Msa0106540 | Msa1335100 | 0.802810 | 4.700865e-49 | -8.615850e-47 |
Msa0108350 | Msa1335100 | 0.817824 | 2.699255e-52 | -8.615850e-47 |
Msa0608820 | Msa1335100 | 0.802006 | 6.884857e-49 | -8.615850e-47 |
Msa0609460 | Msa1335100 | 0.809498 | 1.836620e-50 | -8.615850e-47 |
Msa0610190 | Msa1335100 | 0.803610 | 3.210716e-49 | -8.615850e-47 |
Msa0643190 | Msa1335100 | 0.847403 | 1.182307e-59 | -8.615850e-47 |
Msa0671640 | Msa1335100 | 0.810805 | 9.601579e-51 | -8.615850e-47 |
Msa0687220 | Msa1335100 | 0.801405 | 9.146373e-49 | -8.615850e-47 |
Msa0691610 | Msa1335100 | 0.805292 | 1.432373e-49 | -8.615850e-47 |
Msa0711260 | Msa1335100 | 0.816077 | 6.660558e-52 | -8.615850e-47 |
Msa0732970 | Msa1335100 | 0.817514 | 3.170260e-52 | -8.615850e-47 |
Msa0735140 | Msa1335100 | 0.803259 | 3.796881e-49 | -8.615850e-47 |
Msa0761830 | Msa1335100 | 0.831963 | 1.239340e-55 | -8.615850e-47 |
Msa0768670 | Msa1335100 | 0.806014 | 1.010234e-49 | -8.615850e-47 |
Msa0773960 | Msa1335100 | 0.815080 | 1.110132e-51 | -8.615850e-47 |
Msa0777070 | Msa1335100 | 0.812438 | 4.239369e-51 | -8.615850e-47 |
Msa0804170 | Msa1335100 | 0.835980 | 1.223115e-56 | -8.615850e-47 |
Msa0806930 | Msa1335100 | 0.815412 | 9.370778e-52 | -8.615850e-47 |
Msa0814160 | Msa1335100 | 0.819817 | 9.515597e-53 | -8.615850e-47 |
Msa0831890 | Msa1335100 | 0.827969 | 1.166237e-54 | -8.615850e-47 |
Msa0842180 | Msa1335100 | 0.833794 | 4.345444e-56 | -8.615850e-47 |
Msa0121320 | Msa1335100 | 0.822854 | 1.895956e-53 | -8.615850e-47 |
Msa0147680 | Msa1335100 | 0.820419 | 6.926821e-53 | -8.615850e-47 |
Msa0150910 | Msa1335100 | 0.831711 | 1.429499e-55 | -8.615850e-47 |
Msa0150920 | Msa1335100 | 0.818838 | 1.590224e-52 | -8.615850e-47 |
Msa0152990 | Msa1335100 | 0.804257 | 2.356317e-49 | -8.615850e-47 |
Msa0166180 | Msa1335100 | 0.820260 | 7.534088e-53 | -8.615850e-47 |
Msa0190670 | Msa1335100 | 0.818998 | 1.463008e-52 | -8.615850e-47 |
Msa0190890 | Msa1335100 | 0.827812 | 1.272421e-54 | -8.615850e-47 |
Msa0195580 | Msa1335100 | 0.824770 | 6.742823e-54 | -8.615850e-47 |
Msa0196260 | Msa1335100 | 0.833631 | 4.772976e-56 | -8.615850e-47 |
Msa0220090 | Msa1335100 | 0.810944 | 8.961023e-51 | -8.615850e-47 |
Msa0225070 | Msa1335100 | -0.801057 | 1.077230e-48 | -8.615850e-47 |
Msa0233210 | Msa1335100 | 0.812410 | 4.299105e-51 | -8.615850e-47 |
Msa0238110 | Msa1335100 | 0.831410 | 1.696420e-55 | -8.615850e-47 |
Msa1225850 | Msa1335100 | 0.800252 | 1.572704e-48 | -8.615850e-47 |
Msa1236860 | Msa1335100 | -0.802736 | 4.870766e-49 | -8.615850e-47 |
Msa1262650 | Msa1335100 | 0.854513 | 1.171156e-61 | -8.615850e-47 |
Msa1263110 | Msa1335100 | 0.805857 | 1.090011e-49 | -8.615850e-47 |
Msa1286860 | Msa1335100 | -0.808507 | 2.994131e-50 | -8.615850e-47 |
Msa1297220 | Msa1335100 | -0.820728 | 5.883088e-53 | -8.615850e-47 |
Msa1323260 | Msa1335100 | -0.813819 | 2.110286e-51 | -8.615850e-47 |
Msa1335100 | Msa1343450 | -0.817113 | 3.902182e-52 | -8.615850e-47 |
Msa1335100 | Msa1357860 | 0.827317 | 1.672402e-54 | -8.615850e-47 |
Msa1335100 | Msa1405830 | 0.801636 | 8.201842e-49 | -8.615850e-47 |
Msa1335100 | Msa1413020 | 0.835834 | 1.332492e-56 | -8.615850e-47 |
Msa1335100 | Msa1421130 | 0.801323 | 9.507881e-49 | -8.615850e-47 |
Msa1335100 | Msa1449770 | 0.802883 | 4.542143e-49 | -8.615850e-47 |
Msa1335100 | Msa1459610 | 0.816916 | 4.321832e-52 | -8.615850e-47 |
Msa0375860 | Msa1335100 | 0.818736 | 1.677622e-52 | -8.615850e-47 |
Msa0379480 | Msa1335100 | 0.800553 | 1.365532e-48 | -8.615850e-47 |
Msa0424540 | Msa1335100 | 0.811205 | 7.865549e-51 | -8.615850e-47 |
Msa0471390 | Msa1335100 | 0.815103 | 1.097618e-51 | -8.615850e-47 |
Msa1002820 | Msa1335100 | 0.811310 | 7.463835e-51 | -8.615850e-47 |
Msa1015560 | Msa1335100 | 0.809053 | 2.287952e-50 | -8.615850e-47 |
Msa1021620 | Msa1335100 | 0.810352 | 1.203180e-50 | -8.615850e-47 |
Msa1024350 | Msa1335100 | 0.809087 | 2.249971e-50 | -8.615850e-47 |
Msa1030320 | Msa1335100 | 0.814563 | 1.445302e-51 | -8.615850e-47 |
Msa1055450 | Msa1335100 | 0.809114 | 2.220213e-50 | -8.615850e-47 |
Msa0240590 | Msa1335100 | -0.801085 | 1.063306e-48 | -8.615850e-47 |
Msa0258010 | Msa1335100 | 0.804665 | 1.936781e-49 | -8.615850e-47 |
Msa0261400 | Msa1335100 | 0.830978 | 2.165288e-55 | -8.615850e-47 |
Msa0272230 | Msa1335100 | 0.801893 | 7.261529e-49 | -8.615850e-47 |
Msa0281190 | Msa1335100 | 0.813451 | 2.543357e-51 | -8.615850e-47 |
Msa0290800 | Msa1335100 | 0.812754 | 3.614938e-51 | -8.615850e-47 |
Msa0299030 | Msa1335100 | 0.824514 | 7.746998e-54 | -8.615850e-47 |
Msa0303920 | Msa1335100 | 0.806605 | 7.585955e-50 | -8.615850e-47 |
Msa0316000 | Msa1335100 | 0.804056 | 2.593854e-49 | -8.615850e-47 |
Msa0328870 | Msa1335100 | 0.800340 | 1.509287e-48 | -8.615850e-47 |
Msa0335340 | Msa1335100 | 0.807856 | 4.120834e-50 | -8.615850e-47 |
Msa0349910 | Msa1335100 | 0.807770 | 4.298148e-50 | -8.615850e-47 |
Msa0349930 | Msa1335100 | 0.859809 | 3.198686e-63 | -8.615850e-47 |
Msa0354600 | Msa1335100 | 0.804463 | 2.134217e-49 | -8.615850e-47 |
Msa1157210 | Msa1335100 | 0.801335 | 9.452783e-49 | -8.615850e-47 |
Msa1158450 | Msa1335100 | -0.802244 | 6.152094e-49 | -8.615850e-47 |
Msa1181090 | Msa1335100 | 0.821244 | 4.475588e-53 | -8.615850e-47 |
Msa1187900 | Msa1335100 | 0.813795 | 2.136028e-51 | -8.615850e-47 |
Msa1205270 | Msa1335100 | -0.800229 | 1.589778e-48 | -8.615850e-47 |
Msa1205910 | Msa1335100 | 0.804517 | 2.080131e-49 | -8.615850e-47 |
Msa1217890 | Msa1335100 | 0.810207 | 1.292635e-50 | -8.615850e-47 |
Msa0491770 | Msa1335100 | 0.808209 | 3.466215e-50 | -8.615850e-47 |
Msa0526880 | Msa1335100 | 0.805332 | 1.405028e-49 | -8.615850e-47 |
Msa0565700 | Msa1335100 | 0.803595 | 3.234543e-49 | -8.615850e-47 |
Msa0602050 | Msa1335100 | 0.830078 | 3.596114e-55 | -8.615850e-47 |
Msa0854840 | Msa1335100 | 0.804351 | 2.251870e-49 | -8.615850e-47 |
Msa0856740 | Msa1335100 | 0.823963 | 1.043343e-53 | -8.615850e-47 |
Msa0861730 | Msa1335100 | 0.801700 | 7.955064e-49 | -8.615850e-47 |
Msa0880910 | Msa1335100 | 0.818169 | 2.254927e-52 | -8.615850e-47 |
Msa0893840 | Msa1335100 | 0.823386 | 1.424749e-53 | -8.615850e-47 |
Msa0913550 | Msa1335100 | 0.831821 | 1.343523e-55 | -8.615850e-47 |
Msa0932140 | Msa1335100 | 0.814532 | 1.468232e-51 | -8.615850e-47 |
Msa0932150 | Msa1335100 | 0.821477 | 3.955315e-53 | -8.615850e-47 |
Msa0951150 | Msa1335100 | 0.813810 | 2.119392e-51 | -8.615850e-47 |
Msa0967780 | Msa1335100 | 0.813912 | 2.013032e-51 | -8.615850e-47 |
Msa0967900 | Msa1335100 | -0.802159 | 6.403648e-49 | -8.615850e-47 |
Msa0970270 | Msa1335100 | 0.817806 | 2.723773e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1335100 | MtrunA17_Chr3g0104611 | 96.267 | 375 | 14 | 0 | 1 | 375 | 3 | 377 | 0.0 | 759 |
Msa1335100 | MtrunA17_Chr3g0134551 | 41.969 | 386 | 195 | 13 | 3 | 375 | 21 | 390 | 3.37e-88 | 271 |
Msa1335100 | MtrunA17_Chr3g0082001 | 41.969 | 386 | 195 | 13 | 3 | 375 | 21 | 390 | 6.31e-88 | 270 |
Msa1335100 | MtrunA17_Chr3g0134561 | 41.053 | 380 | 195 | 12 | 9 | 375 | 27 | 390 | 1.06e-84 | 262 |
Msa1335100 | MtrunA17_Chr1g0152831 | 39.687 | 383 | 203 | 13 | 3 | 373 | 55 | 421 | 1.16e-77 | 247 |
Msa1335100 | MtrunA17_Chr3g0134571 | 38.918 | 388 | 203 | 12 | 3 | 375 | 10 | 378 | 1.28e-77 | 244 |
Msa1335100 | MtrunA17_Chr1g0152811 | 39.096 | 376 | 207 | 12 | 9 | 375 | 63 | 425 | 2.00e-75 | 239 |
Msa1335100 | MtrunA17_Chr4g0036961 | 37.467 | 379 | 217 | 11 | 7 | 375 | 4 | 372 | 2.89e-71 | 227 |
Msa1335100 | MtrunA17_Chr4g0068141 | 36.649 | 382 | 218 | 12 | 6 | 375 | 3 | 372 | 2.72e-70 | 224 |
Msa1335100 | MtrunA17_Chr4g0068121 | 35.696 | 381 | 225 | 11 | 5 | 375 | 2 | 372 | 5.90e-65 | 211 |
Msa1335100 | MtrunA17_Chr1g0152791 | 36.683 | 199 | 117 | 5 | 179 | 375 | 16 | 207 | 2.57e-34 | 125 |
Msa1335100 | MtrunA17_Chr1g0152801 | 39.844 | 128 | 71 | 6 | 52 | 177 | 12 | 135 | 4.61e-19 | 82.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1335100 | AT5G58750.2 | 59.530 | 383 | 141 | 8 | 1 | 375 | 1 | 377 | 2.21e-162 | 460 |
Msa1335100 | AT5G58750.1 | 59.530 | 383 | 141 | 8 | 1 | 375 | 9 | 385 | 2.46e-162 | 460 |
Msa1335100 | AT4G24220.1 | 37.600 | 375 | 213 | 10 | 9 | 375 | 27 | 388 | 5.57e-78 | 245 |
Msa1335100 | AT4G24220.2 | 37.600 | 375 | 213 | 10 | 9 | 375 | 26 | 387 | 5.90e-78 | 245 |
Find 60 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGATGTGACACATGCATTT+TGG | 0.173504 | tig0000051:-40870 | Msa1335100:CDS |
ATGGGTAGTTTGTGTGTTTA+TGG | 0.176326 | tig0000051:-40505 | Msa1335100:CDS |
GAATCTTCTTGGAAAGTTTA+TGG | 0.182605 | tig0000051:-41009 | Msa1335100:CDS |
CTACTCCCCATAAGTTTAAT+AGG | 0.187586 | tig0000051:+40094 | None:intergenic |
TAGATTCCCTATTAAACTTA+TGG | 0.190305 | tig0000051:-40101 | Msa1335100:CDS |
CAAGAGATGAAATTGTAATT+AGG | 0.194074 | tig0000051:+40940 | None:intergenic |
TTTGAGCTTCTACTTATTCT+TGG | 0.196532 | tig0000051:+40643 | None:intergenic |
AATAATGTTGCCATAATCTT+TGG | 0.199242 | tig0000051:-41078 | Msa1335100:CDS |
CAAGAGATTGTGGAGGAAAA+TGG | 0.210558 | tig0000051:-40181 | Msa1335100:CDS |
CATAGGCCTGGTTTAATATT+AGG | 0.222925 | tig0000051:-40556 | Msa1335100:CDS |
AATTGAATGGTAAGATTTAT+TGG | 0.245543 | tig0000051:-40585 | Msa1335100:CDS |
AAAGTTGATGATCTTGGTTT+TGG | 0.292140 | tig0000051:-40067 | Msa1335100:CDS |
AAGAGATGAAATTGTAATTA+GGG | 0.294646 | tig0000051:+40941 | None:intergenic |
TGGGTAGTTTGTGTGTTTAT+GGG | 0.297217 | tig0000051:-40504 | Msa1335100:CDS |
TTGACATCATGGCTTTGTTT+TGG | 0.301387 | tig0000051:+40800 | None:intergenic |
TCCAGTGACCCCAAAGATTA+TGG | 0.303260 | tig0000051:+41068 | None:intergenic |
TTGTAGCTGATCAACATATT+TGG | 0.303858 | tig0000051:-40390 | Msa1335100:CDS |
ATAATGTTGCCATAATCTTT+GGG | 0.310126 | tig0000051:-41077 | Msa1335100:CDS |
CAACTTTCTTGTGTGTCTAA+TGG | 0.346296 | tig0000051:+40826 | None:intergenic |
TTTGGGGTCACTGGACTTGT+TGG | 0.347216 | tig0000051:-41060 | Msa1335100:CDS |
TGGGAGGAGCCTTACATTGA+TGG | 0.351122 | tig0000051:-40427 | Msa1335100:CDS |
AATTGAAAATTTAGCTAGTT+GGG | 0.354783 | tig0000051:-40143 | Msa1335100:CDS |
CATTGAATTCAATATTGTAT+TGG | 0.360224 | tig0000051:-40030 | Msa1335100:CDS |
AGGAAATTTGGCCAATTGTT+GGG | 0.360435 | tig0000051:-40291 | Msa1335100:CDS |
GCCATAATCTTTGGGGTCAC+TGG | 0.362176 | tig0000051:-41069 | Msa1335100:CDS |
CTTGTGTGTCTAATGGATAT+TGG | 0.367347 | tig0000051:+40833 | None:intergenic |
TTGGGGTCACTGGACTTGTT+GGG | 0.370698 | tig0000051:-41059 | Msa1335100:CDS |
AGAGATAAAGTTGATGATCT+TGG | 0.371748 | tig0000051:-40073 | Msa1335100:CDS |
AGTACTATAGTTTCTACTAA+TGG | 0.377701 | tig0000051:-40355 | Msa1335100:CDS |
AGATTCCCTATTAAACTTAT+GGG | 0.380693 | tig0000051:-40100 | Msa1335100:CDS |
AGCCATGATGTCAAATGCTT+TGG | 0.385525 | tig0000051:-40791 | Msa1335100:CDS |
AAATTGAAAATTTAGCTAGT+TGG | 0.389672 | tig0000051:-40144 | Msa1335100:CDS |
TTAGGGCTTGAAAGGATGTT+TGG | 0.398286 | tig0000051:+40958 | None:intergenic |
TGATTGAGAAGCAACAAGTT+TGG | 0.417155 | tig0000051:-40204 | Msa1335100:CDS |
ATTTCCTTCCAAGTAAAACT+TGG | 0.426046 | tig0000051:+40307 | None:intergenic |
TTTGTTCCACCAAACACAAA+AGG | 0.426789 | tig0000051:+40457 | None:intergenic |
AAGGAAATTTGGCCAATTGT+TGG | 0.427910 | tig0000051:-40292 | Msa1335100:CDS |
TACTCCCCATAAGTTTAATA+GGG | 0.428575 | tig0000051:+40095 | None:intergenic |
CTCAAATTTCTACTATGCAT+TGG | 0.436682 | tig0000051:-40626 | Msa1335100:CDS |
AAACATGTTTCACTTCAAAC+AGG | 0.444758 | tig0000051:-40739 | Msa1335100:CDS |
ATCCAAAGCATTTGACATCA+TGG | 0.458104 | tig0000051:+40789 | None:intergenic |
AAATTTCTACTATGCATTGG+AGG | 0.461626 | tig0000051:-40623 | Msa1335100:CDS |
TTGCTTGTCGAGAAATTGAA+TGG | 0.471464 | tig0000051:-40598 | Msa1335100:CDS |
AGTTCCTCAAGAAATGTTTG+TGG | 0.472701 | tig0000051:-40251 | Msa1335100:CDS |
AATTGTAATTAGGGCTTGAA+AGG | 0.485655 | tig0000051:+40950 | None:intergenic |
AAGAGATTGTGGAGGAAAAT+GGG | 0.491487 | tig0000051:-40180 | Msa1335100:CDS |
TATTGGTCAGTGCATAGGCC+TGG | 0.499521 | tig0000051:-40568 | Msa1335100:CDS |
GCATCTGATCCATCAATGTA+AGG | 0.504814 | tig0000051:+40418 | None:intergenic |
ACAAGTTTGGCAAGAGATTG+TGG | 0.505085 | tig0000051:-40191 | Msa1335100:CDS |
TTGTTCCACCAAACACAAAA+GGG | 0.508537 | tig0000051:+40458 | None:intergenic |
AGATTTATTGGTCAGTGCAT+AGG | 0.512832 | tig0000051:-40573 | Msa1335100:CDS |
TTTCCTTCCAAGTAAAACTT+GGG | 0.515339 | tig0000051:+40308 | None:intergenic |
TATGAAAATGGCAGCTACAA+AGG | 0.520411 | tig0000051:-41106 | None:intergenic |
ACATTGATGGATCAGATGCT+AGG | 0.542725 | tig0000051:-40414 | Msa1335100:CDS |
GATTCCCTATTAAACTTATG+GGG | 0.565961 | tig0000051:-40099 | Msa1335100:CDS |
GAATTTCCTAATATTAAACC+AGG | 0.567491 | tig0000051:+40550 | None:intergenic |
TAATGTTGCCATAATCTTTG+GGG | 0.588651 | tig0000051:-41076 | Msa1335100:CDS |
TGAATGTATGAGAGATGAGA+AGG | 0.607248 | tig0000051:-40005 | Msa1335100:CDS |
GATTGTGGAGGAAAATGGGT+TGG | 0.622211 | tig0000051:-40176 | Msa1335100:CDS |
AGTTTGGCAAGAGATTGTGG+AGG | 0.753225 | tig0000051:-40188 | Msa1335100:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAGATCATTTTATAATTTTA+TGG | - | tig0000051:40569-40588 | Msa1335100:CDS | 10.0% |
!!! | AGATCATTTTATAATTTTAT+GGG | - | tig0000051:40570-40589 | Msa1335100:CDS | 10.0% |
!!! | TAGATCATTTTATAATTTTA+TGG | - | tig0000051:40569-40588 | Msa1335100:CDS | 10.0% |
!!! | AGATCATTTTATAATTTTAT+GGG | - | tig0000051:40570-40589 | Msa1335100:CDS | 10.0% |
!!! | CTAAATTTTCAATTTTTGTT+TGG | + | tig0000051:40944-40963 | None:intergenic | 15.0% |
!!! | CTAAATTTTCAATTTTTGTT+TGG | + | tig0000051:40944-40963 | None:intergenic | 15.0% |
!! | AAGAGATGAAATTGTAATTA+GGG | + | tig0000051:40155-40174 | None:intergenic | 20.0% |
!!! | ATTTCTTTTGTTCATCAAAA+GGG | + | tig0000051:40407-40426 | None:intergenic | 20.0% |
!!! | AATTTCTTTTGTTCATCAAA+AGG | + | tig0000051:40408-40427 | None:intergenic | 20.0% |
!! | AATTGAATGGTAAGATTTAT+TGG | - | tig0000051:40508-40527 | Msa1335100:CDS | 20.0% |
!!! | GAAGCTTTTAATTCAATTAA+TGG | - | tig0000051:40762-40781 | Msa1335100:CDS | 20.0% |
!!! | AAATGTTTGTGGAAAATTTT+TGG | - | tig0000051:40853-40872 | Msa1335100:CDS | 20.0% |
!! | AAATTGAAAATTTAGCTAGT+TGG | - | tig0000051:40949-40968 | Msa1335100:CDS | 20.0% |
!! | AATTGAAAATTTAGCTAGTT+GGG | - | tig0000051:40950-40969 | Msa1335100:CDS | 20.0% |
!! | CATTGAATTCAATATTGTAT+TGG | - | tig0000051:41063-41082 | Msa1335100:CDS | 20.0% |
!! | AAGAGATGAAATTGTAATTA+GGG | + | tig0000051:40155-40174 | None:intergenic | 20.0% |
!!! | ATTTCTTTTGTTCATCAAAA+GGG | + | tig0000051:40407-40426 | None:intergenic | 20.0% |
!!! | AATTTCTTTTGTTCATCAAA+AGG | + | tig0000051:40408-40427 | None:intergenic | 20.0% |
!! | AATTGAATGGTAAGATTTAT+TGG | - | tig0000051:40508-40527 | Msa1335100:CDS | 20.0% |
!!! | GAAGCTTTTAATTCAATTAA+TGG | - | tig0000051:40762-40781 | Msa1335100:CDS | 20.0% |
!!! | AAATGTTTGTGGAAAATTTT+TGG | - | tig0000051:40853-40872 | Msa1335100:CDS | 20.0% |
!! | AAATTGAAAATTTAGCTAGT+TGG | - | tig0000051:40949-40968 | Msa1335100:CDS | 20.0% |
!! | AATTGAAAATTTAGCTAGTT+GGG | - | tig0000051:40950-40969 | Msa1335100:CDS | 20.0% |
!! | CATTGAATTCAATATTGTAT+TGG | - | tig0000051:41063-41082 | Msa1335100:CDS | 20.0% |
! | AATAATGTTGCCATAATCTT+TGG | - | tig0000051:40015-40034 | Msa1335100:CDS | 25.0% |
! | ATAATGTTGCCATAATCTTT+GGG | - | tig0000051:40016-40035 | Msa1335100:CDS | 25.0% |
!!! | AACTAGTTTTAGAATCTTCT+TGG | - | tig0000051:40073-40092 | Msa1335100:CDS | 25.0% |
! | CAAGAGATGAAATTGTAATT+AGG | + | tig0000051:40156-40175 | None:intergenic | 25.0% |
!! | TTTCTTTTGTTCATCAAAAG+GGG | + | tig0000051:40406-40425 | None:intergenic | 25.0% |
! | GAATTTCCTAATATTAAACC+AGG | + | tig0000051:40546-40565 | None:intergenic | 25.0% |
! | AGTACTATAGTTTCTACTAA+TGG | - | tig0000051:40738-40757 | Msa1335100:CDS | 25.0% |
!!! | GGAAAATTTTTGGTATTCAA+AGG | - | tig0000051:40863-40882 | Msa1335100:CDS | 25.0% |
! | TAGATTCCCTATTAAACTTA+TGG | - | tig0000051:40992-41011 | Msa1335100:CDS | 25.0% |
! | AGATTCCCTATTAAACTTAT+GGG | - | tig0000051:40993-41012 | Msa1335100:CDS | 25.0% |
! | AATAATGTTGCCATAATCTT+TGG | - | tig0000051:40015-40034 | Msa1335100:CDS | 25.0% |
! | ATAATGTTGCCATAATCTTT+GGG | - | tig0000051:40016-40035 | Msa1335100:CDS | 25.0% |
!!! | AACTAGTTTTAGAATCTTCT+TGG | - | tig0000051:40073-40092 | Msa1335100:CDS | 25.0% |
! | CAAGAGATGAAATTGTAATT+AGG | + | tig0000051:40156-40175 | None:intergenic | 25.0% |
!! | TTTCTTTTGTTCATCAAAAG+GGG | + | tig0000051:40406-40425 | None:intergenic | 25.0% |
! | GAATTTCCTAATATTAAACC+AGG | + | tig0000051:40546-40565 | None:intergenic | 25.0% |
! | AGTACTATAGTTTCTACTAA+TGG | - | tig0000051:40738-40757 | Msa1335100:CDS | 25.0% |
!!! | GGAAAATTTTTGGTATTCAA+AGG | - | tig0000051:40863-40882 | Msa1335100:CDS | 25.0% |
! | TAGATTCCCTATTAAACTTA+TGG | - | tig0000051:40992-41011 | Msa1335100:CDS | 25.0% |
! | AGATTCCCTATTAAACTTAT+GGG | - | tig0000051:40993-41012 | Msa1335100:CDS | 25.0% |
TAATGTTGCCATAATCTTTG+GGG | - | tig0000051:40017-40036 | Msa1335100:CDS | 30.0% | |
GAATCTTCTTGGAAAGTTTA+TGG | - | tig0000051:40084-40103 | Msa1335100:CDS | 30.0% | |
AATTGTAATTAGGGCTTGAA+AGG | + | tig0000051:40146-40165 | None:intergenic | 30.0% | |
!!! | GCTTCTTTTGAGTTTCTAAA+GGG | + | tig0000051:40191-40210 | None:intergenic | 30.0% |
!!! | AGCTTCTTTTGAGTTTCTAA+AGG | + | tig0000051:40192-40211 | None:intergenic | 30.0% |
AAACATGTTTCACTTCAAAC+AGG | - | tig0000051:40354-40373 | Msa1335100:CDS | 30.0% | |
TTTGAGCTTCTACTTATTCT+TGG | + | tig0000051:40453-40472 | None:intergenic | 30.0% | |
CTCAAATTTCTACTATGCAT+TGG | - | tig0000051:40467-40486 | Msa1335100:CDS | 30.0% | |
AAATTTCTACTATGCATTGG+AGG | - | tig0000051:40470-40489 | Msa1335100:CDS | 30.0% | |
TTGTAGCTGATCAACATATT+TGG | - | tig0000051:40703-40722 | Msa1335100:CDS | 30.0% | |
TTTCCTTCCAAGTAAAACTT+GGG | + | tig0000051:40788-40807 | None:intergenic | 30.0% | |
ATTTCCTTCCAAGTAAAACT+TGG | + | tig0000051:40789-40808 | None:intergenic | 30.0% | |
! | GTTTTACTTGGAAGGAAATT+TGG | - | tig0000051:40790-40809 | Msa1335100:CDS | 30.0% |
CAATTGTTGGGAAAAAACTA+GGG | - | tig0000051:40814-40833 | Msa1335100:CDS | 30.0% | |
AATTGTTGGGAAAAAACTAG+GGG | - | tig0000051:40815-40834 | Msa1335100:CDS | 30.0% | |
! | TTTTCCACAAACATTTCTTG+AGG | + | tig0000051:40849-40868 | None:intergenic | 30.0% |
GATTCCCTATTAAACTTATG+GGG | - | tig0000051:40994-41013 | Msa1335100:CDS | 30.0% | |
TACTCCCCATAAGTTTAATA+GGG | + | tig0000051:41001-41020 | None:intergenic | 30.0% | |
!! | AGAGATAAAGTTGATGATCT+TGG | - | tig0000051:41020-41039 | Msa1335100:CDS | 30.0% |
!!! | AAAGTTGATGATCTTGGTTT+TGG | - | tig0000051:41026-41045 | Msa1335100:CDS | 30.0% |
TAATGTTGCCATAATCTTTG+GGG | - | tig0000051:40017-40036 | Msa1335100:CDS | 30.0% | |
GAATCTTCTTGGAAAGTTTA+TGG | - | tig0000051:40084-40103 | Msa1335100:CDS | 30.0% | |
AATTGTAATTAGGGCTTGAA+AGG | + | tig0000051:40146-40165 | None:intergenic | 30.0% | |
!!! | GCTTCTTTTGAGTTTCTAAA+GGG | + | tig0000051:40191-40210 | None:intergenic | 30.0% |
!!! | AGCTTCTTTTGAGTTTCTAA+AGG | + | tig0000051:40192-40211 | None:intergenic | 30.0% |
AAACATGTTTCACTTCAAAC+AGG | - | tig0000051:40354-40373 | Msa1335100:CDS | 30.0% | |
TTTGAGCTTCTACTTATTCT+TGG | + | tig0000051:40453-40472 | None:intergenic | 30.0% | |
CTCAAATTTCTACTATGCAT+TGG | - | tig0000051:40467-40486 | Msa1335100:CDS | 30.0% | |
AAATTTCTACTATGCATTGG+AGG | - | tig0000051:40470-40489 | Msa1335100:CDS | 30.0% | |
TTGTAGCTGATCAACATATT+TGG | - | tig0000051:40703-40722 | Msa1335100:CDS | 30.0% | |
TTTCCTTCCAAGTAAAACTT+GGG | + | tig0000051:40788-40807 | None:intergenic | 30.0% | |
ATTTCCTTCCAAGTAAAACT+TGG | + | tig0000051:40789-40808 | None:intergenic | 30.0% | |
! | GTTTTACTTGGAAGGAAATT+TGG | - | tig0000051:40790-40809 | Msa1335100:CDS | 30.0% |
CAATTGTTGGGAAAAAACTA+GGG | - | tig0000051:40814-40833 | Msa1335100:CDS | 30.0% | |
AATTGTTGGGAAAAAACTAG+GGG | - | tig0000051:40815-40834 | Msa1335100:CDS | 30.0% | |
! | TTTTCCACAAACATTTCTTG+AGG | + | tig0000051:40849-40868 | None:intergenic | 30.0% |
GATTCCCTATTAAACTTATG+GGG | - | tig0000051:40994-41013 | Msa1335100:CDS | 30.0% | |
TACTCCCCATAAGTTTAATA+GGG | + | tig0000051:41001-41020 | None:intergenic | 30.0% | |
!! | AGAGATAAAGTTGATGATCT+TGG | - | tig0000051:41020-41039 | Msa1335100:CDS | 30.0% |
!!! | AAAGTTGATGATCTTGGTTT+TGG | - | tig0000051:41026-41045 | Msa1335100:CDS | 30.0% |
! | AAGATGTGACACATGCATTT+TGG | - | tig0000051:40223-40242 | Msa1335100:CDS | 35.0% |
! | AGATGTGACACATGCATTTT+GGG | - | tig0000051:40224-40243 | Msa1335100:CDS | 35.0% |
!!! | ACATGCATTTTGGGTTACAT+GGG | - | tig0000051:40233-40252 | Msa1335100:CDS | 35.0% |
! | CTTGTGTGTCTAATGGATAT+TGG | + | tig0000051:40263-40282 | None:intergenic | 35.0% |
CAACTTTCTTGTGTGTCTAA+TGG | + | tig0000051:40270-40289 | None:intergenic | 35.0% | |
!!! | TTGACATCATGGCTTTGTTT+TGG | + | tig0000051:40296-40315 | None:intergenic | 35.0% |
! | ATCCAAAGCATTTGACATCA+TGG | + | tig0000051:40307-40326 | None:intergenic | 35.0% |
TTGCTTGTCGAGAAATTGAA+TGG | - | tig0000051:40495-40514 | Msa1335100:CDS | 35.0% | |
AGATTTATTGGTCAGTGCAT+AGG | - | tig0000051:40520-40539 | Msa1335100:CDS | 35.0% | |
CATAGGCCTGGTTTAATATT+AGG | - | tig0000051:40537-40556 | Msa1335100:CDS | 35.0% | |
! | ATGGGTAGTTTGTGTGTTTA+TGG | - | tig0000051:40588-40607 | Msa1335100:CDS | 35.0% |
! | TGGGTAGTTTGTGTGTTTAT+GGG | - | tig0000051:40589-40608 | Msa1335100:CDS | 35.0% |
! | TTGAAGATCCCTTTTGTGTT+TGG | - | tig0000051:40627-40646 | Msa1335100:CDS | 35.0% |
TTGTTCCACCAAACACAAAA+GGG | + | tig0000051:40638-40657 | None:intergenic | 35.0% | |
TTTGTTCCACCAAACACAAA+AGG | + | tig0000051:40639-40658 | None:intergenic | 35.0% | |
! | TTGGTGGAACAAAAAAGTGT+TGG | - | tig0000051:40646-40665 | Msa1335100:CDS | 35.0% |
!! | TGGTGGAACAAAAAAGTGTT+GGG | - | tig0000051:40647-40666 | Msa1335100:CDS | 35.0% |
! | TTAATGGCCCAAGTTTTACT+TGG | - | tig0000051:40778-40797 | Msa1335100:CDS | 35.0% |
AAGGAAATTTGGCCAATTGT+TGG | - | tig0000051:40801-40820 | Msa1335100:CDS | 35.0% | |
AGGAAATTTGGCCAATTGTT+GGG | - | tig0000051:40802-40821 | Msa1335100:CDS | 35.0% | |
!!! | CCTAGTTTTTTCCCAACAAT+TGG | + | tig0000051:40816-40835 | None:intergenic | 35.0% |
CCAATTGTTGGGAAAAAACT+AGG | - | tig0000051:40813-40832 | Msa1335100:CDS | 35.0% | |
AGTTCCTCAAGAAATGTTTG+TGG | - | tig0000051:40842-40861 | Msa1335100:CDS | 35.0% | |
TGATTGAGAAGCAACAAGTT+TGG | - | tig0000051:40889-40908 | Msa1335100:CDS | 35.0% | |
AAGAGATTGTGGAGGAAAAT+GGG | - | tig0000051:40913-40932 | Msa1335100:CDS | 35.0% | |
CTACTCCCCATAAGTTTAAT+AGG | + | tig0000051:41002-41021 | None:intergenic | 35.0% | |
TGAATGTATGAGAGATGAGA+AGG | - | tig0000051:41088-41107 | Msa1335100:CDS | 35.0% | |
! | AAGATGTGACACATGCATTT+TGG | - | tig0000051:40223-40242 | Msa1335100:CDS | 35.0% |
! | AGATGTGACACATGCATTTT+GGG | - | tig0000051:40224-40243 | Msa1335100:CDS | 35.0% |
!!! | ACATGCATTTTGGGTTACAT+GGG | - | tig0000051:40233-40252 | Msa1335100:CDS | 35.0% |
! | CTTGTGTGTCTAATGGATAT+TGG | + | tig0000051:40263-40282 | None:intergenic | 35.0% |
CAACTTTCTTGTGTGTCTAA+TGG | + | tig0000051:40270-40289 | None:intergenic | 35.0% | |
!!! | TTGACATCATGGCTTTGTTT+TGG | + | tig0000051:40296-40315 | None:intergenic | 35.0% |
! | ATCCAAAGCATTTGACATCA+TGG | + | tig0000051:40307-40326 | None:intergenic | 35.0% |
TTGCTTGTCGAGAAATTGAA+TGG | - | tig0000051:40495-40514 | Msa1335100:CDS | 35.0% | |
AGATTTATTGGTCAGTGCAT+AGG | - | tig0000051:40520-40539 | Msa1335100:CDS | 35.0% | |
CATAGGCCTGGTTTAATATT+AGG | - | tig0000051:40537-40556 | Msa1335100:CDS | 35.0% | |
! | ATGGGTAGTTTGTGTGTTTA+TGG | - | tig0000051:40588-40607 | Msa1335100:CDS | 35.0% |
! | TGGGTAGTTTGTGTGTTTAT+GGG | - | tig0000051:40589-40608 | Msa1335100:CDS | 35.0% |
! | TTGAAGATCCCTTTTGTGTT+TGG | - | tig0000051:40627-40646 | Msa1335100:CDS | 35.0% |
TTGTTCCACCAAACACAAAA+GGG | + | tig0000051:40638-40657 | None:intergenic | 35.0% | |
TTTGTTCCACCAAACACAAA+AGG | + | tig0000051:40639-40658 | None:intergenic | 35.0% | |
! | TTGGTGGAACAAAAAAGTGT+TGG | - | tig0000051:40646-40665 | Msa1335100:CDS | 35.0% |
!! | TGGTGGAACAAAAAAGTGTT+GGG | - | tig0000051:40647-40666 | Msa1335100:CDS | 35.0% |
! | TTAATGGCCCAAGTTTTACT+TGG | - | tig0000051:40778-40797 | Msa1335100:CDS | 35.0% |
AAGGAAATTTGGCCAATTGT+TGG | - | tig0000051:40801-40820 | Msa1335100:CDS | 35.0% | |
AGGAAATTTGGCCAATTGTT+GGG | - | tig0000051:40802-40821 | Msa1335100:CDS | 35.0% | |
!!! | CCTAGTTTTTTCCCAACAAT+TGG | + | tig0000051:40816-40835 | None:intergenic | 35.0% |
CCAATTGTTGGGAAAAAACT+AGG | - | tig0000051:40813-40832 | Msa1335100:CDS | 35.0% | |
AGTTCCTCAAGAAATGTTTG+TGG | - | tig0000051:40842-40861 | Msa1335100:CDS | 35.0% | |
TGATTGAGAAGCAACAAGTT+TGG | - | tig0000051:40889-40908 | Msa1335100:CDS | 35.0% | |
AAGAGATTGTGGAGGAAAAT+GGG | - | tig0000051:40913-40932 | Msa1335100:CDS | 35.0% | |
CTACTCCCCATAAGTTTAAT+AGG | + | tig0000051:41002-41021 | None:intergenic | 35.0% | |
TGAATGTATGAGAGATGAGA+AGG | - | tig0000051:41088-41107 | Msa1335100:CDS | 35.0% | |
TTAGGGCTTGAAAGGATGTT+TGG | + | tig0000051:40138-40157 | None:intergenic | 40.0% | |
!!! | CACATGCATTTTGGGTTACA+TGG | - | tig0000051:40232-40251 | Msa1335100:CDS | 40.0% |
AGCCATGATGTCAAATGCTT+TGG | - | tig0000051:40302-40321 | Msa1335100:CDS | 40.0% | |
! | AAGATCCCTTTTGTGTTTGG+TGG | - | tig0000051:40630-40649 | Msa1335100:CDS | 40.0% |
!! | TGGAACAAAAAAGTGTTGGG+AGG | - | tig0000051:40650-40669 | Msa1335100:CDS | 40.0% |
GCATCTGATCCATCAATGTA+AGG | + | tig0000051:40678-40697 | None:intergenic | 40.0% | |
! | ACATTGATGGATCAGATGCT+AGG | - | tig0000051:40679-40698 | Msa1335100:CDS | 40.0% |
ACAAGTTTGGCAAGAGATTG+TGG | - | tig0000051:40902-40921 | Msa1335100:CDS | 40.0% | |
CAAGAGATTGTGGAGGAAAA+TGG | - | tig0000051:40912-40931 | Msa1335100:CDS | 40.0% | |
!!! | ATGATCTTGGTTTTGGAGCA+AGG | - | tig0000051:41033-41052 | Msa1335100:CDS | 40.0% |
TTAGGGCTTGAAAGGATGTT+TGG | + | tig0000051:40138-40157 | None:intergenic | 40.0% | |
!!! | CACATGCATTTTGGGTTACA+TGG | - | tig0000051:40232-40251 | Msa1335100:CDS | 40.0% |
AGCCATGATGTCAAATGCTT+TGG | - | tig0000051:40302-40321 | Msa1335100:CDS | 40.0% | |
! | AAGATCCCTTTTGTGTTTGG+TGG | - | tig0000051:40630-40649 | Msa1335100:CDS | 40.0% |
!! | TGGAACAAAAAAGTGTTGGG+AGG | - | tig0000051:40650-40669 | Msa1335100:CDS | 40.0% |
GCATCTGATCCATCAATGTA+AGG | + | tig0000051:40678-40697 | None:intergenic | 40.0% | |
! | ACATTGATGGATCAGATGCT+AGG | - | tig0000051:40679-40698 | Msa1335100:CDS | 40.0% |
ACAAGTTTGGCAAGAGATTG+TGG | - | tig0000051:40902-40921 | Msa1335100:CDS | 40.0% | |
CAAGAGATTGTGGAGGAAAA+TGG | - | tig0000051:40912-40931 | Msa1335100:CDS | 40.0% | |
!!! | ATGATCTTGGTTTTGGAGCA+AGG | - | tig0000051:41033-41052 | Msa1335100:CDS | 40.0% |
TCCAGTGACCCCAAAGATTA+TGG | + | tig0000051:40028-40047 | None:intergenic | 45.0% | |
! | TGGCCCAAGTTTTACTTGGA+AGG | - | tig0000051:40782-40801 | Msa1335100:CDS | 45.0% |
AGTTTGGCAAGAGATTGTGG+AGG | - | tig0000051:40905-40924 | Msa1335100:CDS | 45.0% | |
GATTGTGGAGGAAAATGGGT+TGG | - | tig0000051:40917-40936 | Msa1335100:CDS | 45.0% | |
TCCAGTGACCCCAAAGATTA+TGG | + | tig0000051:40028-40047 | None:intergenic | 45.0% | |
! | TGGCCCAAGTTTTACTTGGA+AGG | - | tig0000051:40782-40801 | Msa1335100:CDS | 45.0% |
AGTTTGGCAAGAGATTGTGG+AGG | - | tig0000051:40905-40924 | Msa1335100:CDS | 45.0% | |
GATTGTGGAGGAAAATGGGT+TGG | - | tig0000051:40917-40936 | Msa1335100:CDS | 45.0% | |
!! | GCCATAATCTTTGGGGTCAC+TGG | - | tig0000051:40024-40043 | Msa1335100:CDS | 50.0% |
! | TTTGGGGTCACTGGACTTGT+TGG | - | tig0000051:40033-40052 | Msa1335100:CDS | 50.0% |
! | TTGGGGTCACTGGACTTGTT+GGG | - | tig0000051:40034-40053 | Msa1335100:CDS | 50.0% |
TATTGGTCAGTGCATAGGCC+TGG | - | tig0000051:40525-40544 | Msa1335100:CDS | 50.0% | |
TGGGAGGAGCCTTACATTGA+TGG | - | tig0000051:40666-40685 | Msa1335100:CDS | 50.0% | |
!! | GCCATAATCTTTGGGGTCAC+TGG | - | tig0000051:40024-40043 | Msa1335100:CDS | 50.0% |
! | TTTGGGGTCACTGGACTTGT+TGG | - | tig0000051:40033-40052 | Msa1335100:CDS | 50.0% |
! | TTGGGGTCACTGGACTTGTT+GGG | - | tig0000051:40034-40053 | Msa1335100:CDS | 50.0% |
TATTGGTCAGTGCATAGGCC+TGG | - | tig0000051:40525-40544 | Msa1335100:CDS | 50.0% | |
TGGGAGGAGCCTTACATTGA+TGG | - | tig0000051:40666-40685 | Msa1335100:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0000051 | gene | 39994 | 41121 | 39994 | ID=Msa1335100;Name=Msa1335100 |
tig0000051 | mRNA | 39994 | 41121 | 39994 | ID=Msa1335100-mRNA-1;Parent=Msa1335100;Name=Msa1335100-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|375 |
tig0000051 | exon | 39994 | 41121 | 39994 | ID=Msa1335100-mRNA-1:exon:13;Parent=Msa1335100-mRNA-1 |
tig0000051 | CDS | 39994 | 41121 | 39994 | ID=Msa1335100-mRNA-1:cds;Parent=Msa1335100-mRNA-1 |
Gene Sequence |
Protein sequence |