AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1335100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1335100 MtrunA17_Chr3g0104611 96.267 375 14 0 1 375 3 377 0.0 759
Msa1335100 MtrunA17_Chr3g0134551 41.969 386 195 13 3 375 21 390 3.37e-88 271
Msa1335100 MtrunA17_Chr3g0082001 41.969 386 195 13 3 375 21 390 6.31e-88 270
Msa1335100 MtrunA17_Chr3g0134561 41.053 380 195 12 9 375 27 390 1.06e-84 262
Msa1335100 MtrunA17_Chr1g0152831 39.687 383 203 13 3 373 55 421 1.16e-77 247
Msa1335100 MtrunA17_Chr3g0134571 38.918 388 203 12 3 375 10 378 1.28e-77 244
Msa1335100 MtrunA17_Chr1g0152811 39.096 376 207 12 9 375 63 425 2.00e-75 239
Msa1335100 MtrunA17_Chr4g0036961 37.467 379 217 11 7 375 4 372 2.89e-71 227
Msa1335100 MtrunA17_Chr4g0068141 36.649 382 218 12 6 375 3 372 2.72e-70 224
Msa1335100 MtrunA17_Chr4g0068121 35.696 381 225 11 5 375 2 372 5.90e-65 211
Msa1335100 MtrunA17_Chr1g0152791 36.683 199 117 5 179 375 16 207 2.57e-34 125
Msa1335100 MtrunA17_Chr1g0152801 39.844 128 71 6 52 177 12 135 4.61e-19 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1335100 AT5G58750.2 59.530 383 141 8 1 375 1 377 2.21e-162 460
Msa1335100 AT5G58750.1 59.530 383 141 8 1 375 9 385 2.46e-162 460
Msa1335100 AT4G24220.1 37.600 375 213 10 9 375 27 388 5.57e-78 245
Msa1335100 AT4G24220.2 37.600 375 213 10 9 375 26 387 5.90e-78 245

Find 60 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATGTGACACATGCATTT+TGG 0.173504 tig0000051:-40870 Msa1335100:CDS
ATGGGTAGTTTGTGTGTTTA+TGG 0.176326 tig0000051:-40505 Msa1335100:CDS
GAATCTTCTTGGAAAGTTTA+TGG 0.182605 tig0000051:-41009 Msa1335100:CDS
CTACTCCCCATAAGTTTAAT+AGG 0.187586 tig0000051:+40094 None:intergenic
TAGATTCCCTATTAAACTTA+TGG 0.190305 tig0000051:-40101 Msa1335100:CDS
CAAGAGATGAAATTGTAATT+AGG 0.194074 tig0000051:+40940 None:intergenic
TTTGAGCTTCTACTTATTCT+TGG 0.196532 tig0000051:+40643 None:intergenic
AATAATGTTGCCATAATCTT+TGG 0.199242 tig0000051:-41078 Msa1335100:CDS
CAAGAGATTGTGGAGGAAAA+TGG 0.210558 tig0000051:-40181 Msa1335100:CDS
CATAGGCCTGGTTTAATATT+AGG 0.222925 tig0000051:-40556 Msa1335100:CDS
AATTGAATGGTAAGATTTAT+TGG 0.245543 tig0000051:-40585 Msa1335100:CDS
AAAGTTGATGATCTTGGTTT+TGG 0.292140 tig0000051:-40067 Msa1335100:CDS
AAGAGATGAAATTGTAATTA+GGG 0.294646 tig0000051:+40941 None:intergenic
TGGGTAGTTTGTGTGTTTAT+GGG 0.297217 tig0000051:-40504 Msa1335100:CDS
TTGACATCATGGCTTTGTTT+TGG 0.301387 tig0000051:+40800 None:intergenic
TCCAGTGACCCCAAAGATTA+TGG 0.303260 tig0000051:+41068 None:intergenic
TTGTAGCTGATCAACATATT+TGG 0.303858 tig0000051:-40390 Msa1335100:CDS
ATAATGTTGCCATAATCTTT+GGG 0.310126 tig0000051:-41077 Msa1335100:CDS
CAACTTTCTTGTGTGTCTAA+TGG 0.346296 tig0000051:+40826 None:intergenic
TTTGGGGTCACTGGACTTGT+TGG 0.347216 tig0000051:-41060 Msa1335100:CDS
TGGGAGGAGCCTTACATTGA+TGG 0.351122 tig0000051:-40427 Msa1335100:CDS
AATTGAAAATTTAGCTAGTT+GGG 0.354783 tig0000051:-40143 Msa1335100:CDS
CATTGAATTCAATATTGTAT+TGG 0.360224 tig0000051:-40030 Msa1335100:CDS
AGGAAATTTGGCCAATTGTT+GGG 0.360435 tig0000051:-40291 Msa1335100:CDS
GCCATAATCTTTGGGGTCAC+TGG 0.362176 tig0000051:-41069 Msa1335100:CDS
CTTGTGTGTCTAATGGATAT+TGG 0.367347 tig0000051:+40833 None:intergenic
TTGGGGTCACTGGACTTGTT+GGG 0.370698 tig0000051:-41059 Msa1335100:CDS
AGAGATAAAGTTGATGATCT+TGG 0.371748 tig0000051:-40073 Msa1335100:CDS
AGTACTATAGTTTCTACTAA+TGG 0.377701 tig0000051:-40355 Msa1335100:CDS
AGATTCCCTATTAAACTTAT+GGG 0.380693 tig0000051:-40100 Msa1335100:CDS
AGCCATGATGTCAAATGCTT+TGG 0.385525 tig0000051:-40791 Msa1335100:CDS
AAATTGAAAATTTAGCTAGT+TGG 0.389672 tig0000051:-40144 Msa1335100:CDS
TTAGGGCTTGAAAGGATGTT+TGG 0.398286 tig0000051:+40958 None:intergenic
TGATTGAGAAGCAACAAGTT+TGG 0.417155 tig0000051:-40204 Msa1335100:CDS
ATTTCCTTCCAAGTAAAACT+TGG 0.426046 tig0000051:+40307 None:intergenic
TTTGTTCCACCAAACACAAA+AGG 0.426789 tig0000051:+40457 None:intergenic
AAGGAAATTTGGCCAATTGT+TGG 0.427910 tig0000051:-40292 Msa1335100:CDS
TACTCCCCATAAGTTTAATA+GGG 0.428575 tig0000051:+40095 None:intergenic
CTCAAATTTCTACTATGCAT+TGG 0.436682 tig0000051:-40626 Msa1335100:CDS
AAACATGTTTCACTTCAAAC+AGG 0.444758 tig0000051:-40739 Msa1335100:CDS
ATCCAAAGCATTTGACATCA+TGG 0.458104 tig0000051:+40789 None:intergenic
AAATTTCTACTATGCATTGG+AGG 0.461626 tig0000051:-40623 Msa1335100:CDS
TTGCTTGTCGAGAAATTGAA+TGG 0.471464 tig0000051:-40598 Msa1335100:CDS
AGTTCCTCAAGAAATGTTTG+TGG 0.472701 tig0000051:-40251 Msa1335100:CDS
AATTGTAATTAGGGCTTGAA+AGG 0.485655 tig0000051:+40950 None:intergenic
AAGAGATTGTGGAGGAAAAT+GGG 0.491487 tig0000051:-40180 Msa1335100:CDS
TATTGGTCAGTGCATAGGCC+TGG 0.499521 tig0000051:-40568 Msa1335100:CDS
GCATCTGATCCATCAATGTA+AGG 0.504814 tig0000051:+40418 None:intergenic
ACAAGTTTGGCAAGAGATTG+TGG 0.505085 tig0000051:-40191 Msa1335100:CDS
TTGTTCCACCAAACACAAAA+GGG 0.508537 tig0000051:+40458 None:intergenic
AGATTTATTGGTCAGTGCAT+AGG 0.512832 tig0000051:-40573 Msa1335100:CDS
TTTCCTTCCAAGTAAAACTT+GGG 0.515339 tig0000051:+40308 None:intergenic
TATGAAAATGGCAGCTACAA+AGG 0.520411 tig0000051:-41106 None:intergenic
ACATTGATGGATCAGATGCT+AGG 0.542725 tig0000051:-40414 Msa1335100:CDS
GATTCCCTATTAAACTTATG+GGG 0.565961 tig0000051:-40099 Msa1335100:CDS
GAATTTCCTAATATTAAACC+AGG 0.567491 tig0000051:+40550 None:intergenic
TAATGTTGCCATAATCTTTG+GGG 0.588651 tig0000051:-41076 Msa1335100:CDS
TGAATGTATGAGAGATGAGA+AGG 0.607248 tig0000051:-40005 Msa1335100:CDS
GATTGTGGAGGAAAATGGGT+TGG 0.622211 tig0000051:-40176 Msa1335100:CDS
AGTTTGGCAAGAGATTGTGG+AGG 0.753225 tig0000051:-40188 Msa1335100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGATCATTTTATAATTTTA+TGG - tig0000051:40569-40588 Msa1335100:CDS 10.0%
!!! AGATCATTTTATAATTTTAT+GGG - tig0000051:40570-40589 Msa1335100:CDS 10.0%
!!! TAGATCATTTTATAATTTTA+TGG - tig0000051:40569-40588 Msa1335100:CDS 10.0%
!!! AGATCATTTTATAATTTTAT+GGG - tig0000051:40570-40589 Msa1335100:CDS 10.0%
!!! CTAAATTTTCAATTTTTGTT+TGG + tig0000051:40944-40963 None:intergenic 15.0%
!!! CTAAATTTTCAATTTTTGTT+TGG + tig0000051:40944-40963 None:intergenic 15.0%
!! AAGAGATGAAATTGTAATTA+GGG + tig0000051:40155-40174 None:intergenic 20.0%
!!! ATTTCTTTTGTTCATCAAAA+GGG + tig0000051:40407-40426 None:intergenic 20.0%
!!! AATTTCTTTTGTTCATCAAA+AGG + tig0000051:40408-40427 None:intergenic 20.0%
!! AATTGAATGGTAAGATTTAT+TGG - tig0000051:40508-40527 Msa1335100:CDS 20.0%
!!! GAAGCTTTTAATTCAATTAA+TGG - tig0000051:40762-40781 Msa1335100:CDS 20.0%
!!! AAATGTTTGTGGAAAATTTT+TGG - tig0000051:40853-40872 Msa1335100:CDS 20.0%
!! AAATTGAAAATTTAGCTAGT+TGG - tig0000051:40949-40968 Msa1335100:CDS 20.0%
!! AATTGAAAATTTAGCTAGTT+GGG - tig0000051:40950-40969 Msa1335100:CDS 20.0%
!! CATTGAATTCAATATTGTAT+TGG - tig0000051:41063-41082 Msa1335100:CDS 20.0%
!! AAGAGATGAAATTGTAATTA+GGG + tig0000051:40155-40174 None:intergenic 20.0%
!!! ATTTCTTTTGTTCATCAAAA+GGG + tig0000051:40407-40426 None:intergenic 20.0%
!!! AATTTCTTTTGTTCATCAAA+AGG + tig0000051:40408-40427 None:intergenic 20.0%
!! AATTGAATGGTAAGATTTAT+TGG - tig0000051:40508-40527 Msa1335100:CDS 20.0%
!!! GAAGCTTTTAATTCAATTAA+TGG - tig0000051:40762-40781 Msa1335100:CDS 20.0%
!!! AAATGTTTGTGGAAAATTTT+TGG - tig0000051:40853-40872 Msa1335100:CDS 20.0%
!! AAATTGAAAATTTAGCTAGT+TGG - tig0000051:40949-40968 Msa1335100:CDS 20.0%
!! AATTGAAAATTTAGCTAGTT+GGG - tig0000051:40950-40969 Msa1335100:CDS 20.0%
!! CATTGAATTCAATATTGTAT+TGG - tig0000051:41063-41082 Msa1335100:CDS 20.0%
! AATAATGTTGCCATAATCTT+TGG - tig0000051:40015-40034 Msa1335100:CDS 25.0%
! ATAATGTTGCCATAATCTTT+GGG - tig0000051:40016-40035 Msa1335100:CDS 25.0%
!!! AACTAGTTTTAGAATCTTCT+TGG - tig0000051:40073-40092 Msa1335100:CDS 25.0%
! CAAGAGATGAAATTGTAATT+AGG + tig0000051:40156-40175 None:intergenic 25.0%
!! TTTCTTTTGTTCATCAAAAG+GGG + tig0000051:40406-40425 None:intergenic 25.0%
! GAATTTCCTAATATTAAACC+AGG + tig0000051:40546-40565 None:intergenic 25.0%
! AGTACTATAGTTTCTACTAA+TGG - tig0000051:40738-40757 Msa1335100:CDS 25.0%
!!! GGAAAATTTTTGGTATTCAA+AGG - tig0000051:40863-40882 Msa1335100:CDS 25.0%
! TAGATTCCCTATTAAACTTA+TGG - tig0000051:40992-41011 Msa1335100:CDS 25.0%
! AGATTCCCTATTAAACTTAT+GGG - tig0000051:40993-41012 Msa1335100:CDS 25.0%
! AATAATGTTGCCATAATCTT+TGG - tig0000051:40015-40034 Msa1335100:CDS 25.0%
! ATAATGTTGCCATAATCTTT+GGG - tig0000051:40016-40035 Msa1335100:CDS 25.0%
!!! AACTAGTTTTAGAATCTTCT+TGG - tig0000051:40073-40092 Msa1335100:CDS 25.0%
! CAAGAGATGAAATTGTAATT+AGG + tig0000051:40156-40175 None:intergenic 25.0%
!! TTTCTTTTGTTCATCAAAAG+GGG + tig0000051:40406-40425 None:intergenic 25.0%
! GAATTTCCTAATATTAAACC+AGG + tig0000051:40546-40565 None:intergenic 25.0%
! AGTACTATAGTTTCTACTAA+TGG - tig0000051:40738-40757 Msa1335100:CDS 25.0%
!!! GGAAAATTTTTGGTATTCAA+AGG - tig0000051:40863-40882 Msa1335100:CDS 25.0%
! TAGATTCCCTATTAAACTTA+TGG - tig0000051:40992-41011 Msa1335100:CDS 25.0%
! AGATTCCCTATTAAACTTAT+GGG - tig0000051:40993-41012 Msa1335100:CDS 25.0%
TAATGTTGCCATAATCTTTG+GGG - tig0000051:40017-40036 Msa1335100:CDS 30.0%
GAATCTTCTTGGAAAGTTTA+TGG - tig0000051:40084-40103 Msa1335100:CDS 30.0%
AATTGTAATTAGGGCTTGAA+AGG + tig0000051:40146-40165 None:intergenic 30.0%
!!! GCTTCTTTTGAGTTTCTAAA+GGG + tig0000051:40191-40210 None:intergenic 30.0%
!!! AGCTTCTTTTGAGTTTCTAA+AGG + tig0000051:40192-40211 None:intergenic 30.0%
AAACATGTTTCACTTCAAAC+AGG - tig0000051:40354-40373 Msa1335100:CDS 30.0%
TTTGAGCTTCTACTTATTCT+TGG + tig0000051:40453-40472 None:intergenic 30.0%
CTCAAATTTCTACTATGCAT+TGG - tig0000051:40467-40486 Msa1335100:CDS 30.0%
AAATTTCTACTATGCATTGG+AGG - tig0000051:40470-40489 Msa1335100:CDS 30.0%
TTGTAGCTGATCAACATATT+TGG - tig0000051:40703-40722 Msa1335100:CDS 30.0%
TTTCCTTCCAAGTAAAACTT+GGG + tig0000051:40788-40807 None:intergenic 30.0%
ATTTCCTTCCAAGTAAAACT+TGG + tig0000051:40789-40808 None:intergenic 30.0%
! GTTTTACTTGGAAGGAAATT+TGG - tig0000051:40790-40809 Msa1335100:CDS 30.0%
CAATTGTTGGGAAAAAACTA+GGG - tig0000051:40814-40833 Msa1335100:CDS 30.0%
AATTGTTGGGAAAAAACTAG+GGG - tig0000051:40815-40834 Msa1335100:CDS 30.0%
! TTTTCCACAAACATTTCTTG+AGG + tig0000051:40849-40868 None:intergenic 30.0%
GATTCCCTATTAAACTTATG+GGG - tig0000051:40994-41013 Msa1335100:CDS 30.0%
TACTCCCCATAAGTTTAATA+GGG + tig0000051:41001-41020 None:intergenic 30.0%
!! AGAGATAAAGTTGATGATCT+TGG - tig0000051:41020-41039 Msa1335100:CDS 30.0%
!!! AAAGTTGATGATCTTGGTTT+TGG - tig0000051:41026-41045 Msa1335100:CDS 30.0%
TAATGTTGCCATAATCTTTG+GGG - tig0000051:40017-40036 Msa1335100:CDS 30.0%
GAATCTTCTTGGAAAGTTTA+TGG - tig0000051:40084-40103 Msa1335100:CDS 30.0%
AATTGTAATTAGGGCTTGAA+AGG + tig0000051:40146-40165 None:intergenic 30.0%
!!! GCTTCTTTTGAGTTTCTAAA+GGG + tig0000051:40191-40210 None:intergenic 30.0%
!!! AGCTTCTTTTGAGTTTCTAA+AGG + tig0000051:40192-40211 None:intergenic 30.0%
AAACATGTTTCACTTCAAAC+AGG - tig0000051:40354-40373 Msa1335100:CDS 30.0%
TTTGAGCTTCTACTTATTCT+TGG + tig0000051:40453-40472 None:intergenic 30.0%
CTCAAATTTCTACTATGCAT+TGG - tig0000051:40467-40486 Msa1335100:CDS 30.0%
AAATTTCTACTATGCATTGG+AGG - tig0000051:40470-40489 Msa1335100:CDS 30.0%
TTGTAGCTGATCAACATATT+TGG - tig0000051:40703-40722 Msa1335100:CDS 30.0%
TTTCCTTCCAAGTAAAACTT+GGG + tig0000051:40788-40807 None:intergenic 30.0%
ATTTCCTTCCAAGTAAAACT+TGG + tig0000051:40789-40808 None:intergenic 30.0%
! GTTTTACTTGGAAGGAAATT+TGG - tig0000051:40790-40809 Msa1335100:CDS 30.0%
CAATTGTTGGGAAAAAACTA+GGG - tig0000051:40814-40833 Msa1335100:CDS 30.0%
AATTGTTGGGAAAAAACTAG+GGG - tig0000051:40815-40834 Msa1335100:CDS 30.0%
! TTTTCCACAAACATTTCTTG+AGG + tig0000051:40849-40868 None:intergenic 30.0%
GATTCCCTATTAAACTTATG+GGG - tig0000051:40994-41013 Msa1335100:CDS 30.0%
TACTCCCCATAAGTTTAATA+GGG + tig0000051:41001-41020 None:intergenic 30.0%
!! AGAGATAAAGTTGATGATCT+TGG - tig0000051:41020-41039 Msa1335100:CDS 30.0%
!!! AAAGTTGATGATCTTGGTTT+TGG - tig0000051:41026-41045 Msa1335100:CDS 30.0%
! AAGATGTGACACATGCATTT+TGG - tig0000051:40223-40242 Msa1335100:CDS 35.0%
! AGATGTGACACATGCATTTT+GGG - tig0000051:40224-40243 Msa1335100:CDS 35.0%
!!! ACATGCATTTTGGGTTACAT+GGG - tig0000051:40233-40252 Msa1335100:CDS 35.0%
! CTTGTGTGTCTAATGGATAT+TGG + tig0000051:40263-40282 None:intergenic 35.0%
CAACTTTCTTGTGTGTCTAA+TGG + tig0000051:40270-40289 None:intergenic 35.0%
!!! TTGACATCATGGCTTTGTTT+TGG + tig0000051:40296-40315 None:intergenic 35.0%
! ATCCAAAGCATTTGACATCA+TGG + tig0000051:40307-40326 None:intergenic 35.0%
TTGCTTGTCGAGAAATTGAA+TGG - tig0000051:40495-40514 Msa1335100:CDS 35.0%
AGATTTATTGGTCAGTGCAT+AGG - tig0000051:40520-40539 Msa1335100:CDS 35.0%
CATAGGCCTGGTTTAATATT+AGG - tig0000051:40537-40556 Msa1335100:CDS 35.0%
! ATGGGTAGTTTGTGTGTTTA+TGG - tig0000051:40588-40607 Msa1335100:CDS 35.0%
! TGGGTAGTTTGTGTGTTTAT+GGG - tig0000051:40589-40608 Msa1335100:CDS 35.0%
! TTGAAGATCCCTTTTGTGTT+TGG - tig0000051:40627-40646 Msa1335100:CDS 35.0%
TTGTTCCACCAAACACAAAA+GGG + tig0000051:40638-40657 None:intergenic 35.0%
TTTGTTCCACCAAACACAAA+AGG + tig0000051:40639-40658 None:intergenic 35.0%
! TTGGTGGAACAAAAAAGTGT+TGG - tig0000051:40646-40665 Msa1335100:CDS 35.0%
!! TGGTGGAACAAAAAAGTGTT+GGG - tig0000051:40647-40666 Msa1335100:CDS 35.0%
! TTAATGGCCCAAGTTTTACT+TGG - tig0000051:40778-40797 Msa1335100:CDS 35.0%
AAGGAAATTTGGCCAATTGT+TGG - tig0000051:40801-40820 Msa1335100:CDS 35.0%
AGGAAATTTGGCCAATTGTT+GGG - tig0000051:40802-40821 Msa1335100:CDS 35.0%
!!! CCTAGTTTTTTCCCAACAAT+TGG + tig0000051:40816-40835 None:intergenic 35.0%
CCAATTGTTGGGAAAAAACT+AGG - tig0000051:40813-40832 Msa1335100:CDS 35.0%
AGTTCCTCAAGAAATGTTTG+TGG - tig0000051:40842-40861 Msa1335100:CDS 35.0%
TGATTGAGAAGCAACAAGTT+TGG - tig0000051:40889-40908 Msa1335100:CDS 35.0%
AAGAGATTGTGGAGGAAAAT+GGG - tig0000051:40913-40932 Msa1335100:CDS 35.0%
CTACTCCCCATAAGTTTAAT+AGG + tig0000051:41002-41021 None:intergenic 35.0%
TGAATGTATGAGAGATGAGA+AGG - tig0000051:41088-41107 Msa1335100:CDS 35.0%
! AAGATGTGACACATGCATTT+TGG - tig0000051:40223-40242 Msa1335100:CDS 35.0%
! AGATGTGACACATGCATTTT+GGG - tig0000051:40224-40243 Msa1335100:CDS 35.0%
!!! ACATGCATTTTGGGTTACAT+GGG - tig0000051:40233-40252 Msa1335100:CDS 35.0%
! CTTGTGTGTCTAATGGATAT+TGG + tig0000051:40263-40282 None:intergenic 35.0%
CAACTTTCTTGTGTGTCTAA+TGG + tig0000051:40270-40289 None:intergenic 35.0%
!!! TTGACATCATGGCTTTGTTT+TGG + tig0000051:40296-40315 None:intergenic 35.0%
! ATCCAAAGCATTTGACATCA+TGG + tig0000051:40307-40326 None:intergenic 35.0%
TTGCTTGTCGAGAAATTGAA+TGG - tig0000051:40495-40514 Msa1335100:CDS 35.0%
AGATTTATTGGTCAGTGCAT+AGG - tig0000051:40520-40539 Msa1335100:CDS 35.0%
CATAGGCCTGGTTTAATATT+AGG - tig0000051:40537-40556 Msa1335100:CDS 35.0%
! ATGGGTAGTTTGTGTGTTTA+TGG - tig0000051:40588-40607 Msa1335100:CDS 35.0%
! TGGGTAGTTTGTGTGTTTAT+GGG - tig0000051:40589-40608 Msa1335100:CDS 35.0%
! TTGAAGATCCCTTTTGTGTT+TGG - tig0000051:40627-40646 Msa1335100:CDS 35.0%
TTGTTCCACCAAACACAAAA+GGG + tig0000051:40638-40657 None:intergenic 35.0%
TTTGTTCCACCAAACACAAA+AGG + tig0000051:40639-40658 None:intergenic 35.0%
! TTGGTGGAACAAAAAAGTGT+TGG - tig0000051:40646-40665 Msa1335100:CDS 35.0%
!! TGGTGGAACAAAAAAGTGTT+GGG - tig0000051:40647-40666 Msa1335100:CDS 35.0%
! TTAATGGCCCAAGTTTTACT+TGG - tig0000051:40778-40797 Msa1335100:CDS 35.0%
AAGGAAATTTGGCCAATTGT+TGG - tig0000051:40801-40820 Msa1335100:CDS 35.0%
AGGAAATTTGGCCAATTGTT+GGG - tig0000051:40802-40821 Msa1335100:CDS 35.0%
!!! CCTAGTTTTTTCCCAACAAT+TGG + tig0000051:40816-40835 None:intergenic 35.0%
CCAATTGTTGGGAAAAAACT+AGG - tig0000051:40813-40832 Msa1335100:CDS 35.0%
AGTTCCTCAAGAAATGTTTG+TGG - tig0000051:40842-40861 Msa1335100:CDS 35.0%
TGATTGAGAAGCAACAAGTT+TGG - tig0000051:40889-40908 Msa1335100:CDS 35.0%
AAGAGATTGTGGAGGAAAAT+GGG - tig0000051:40913-40932 Msa1335100:CDS 35.0%
CTACTCCCCATAAGTTTAAT+AGG + tig0000051:41002-41021 None:intergenic 35.0%
TGAATGTATGAGAGATGAGA+AGG - tig0000051:41088-41107 Msa1335100:CDS 35.0%
TTAGGGCTTGAAAGGATGTT+TGG + tig0000051:40138-40157 None:intergenic 40.0%
!!! CACATGCATTTTGGGTTACA+TGG - tig0000051:40232-40251 Msa1335100:CDS 40.0%
AGCCATGATGTCAAATGCTT+TGG - tig0000051:40302-40321 Msa1335100:CDS 40.0%
! AAGATCCCTTTTGTGTTTGG+TGG - tig0000051:40630-40649 Msa1335100:CDS 40.0%
!! TGGAACAAAAAAGTGTTGGG+AGG - tig0000051:40650-40669 Msa1335100:CDS 40.0%
GCATCTGATCCATCAATGTA+AGG + tig0000051:40678-40697 None:intergenic 40.0%
! ACATTGATGGATCAGATGCT+AGG - tig0000051:40679-40698 Msa1335100:CDS 40.0%
ACAAGTTTGGCAAGAGATTG+TGG - tig0000051:40902-40921 Msa1335100:CDS 40.0%
CAAGAGATTGTGGAGGAAAA+TGG - tig0000051:40912-40931 Msa1335100:CDS 40.0%
!!! ATGATCTTGGTTTTGGAGCA+AGG - tig0000051:41033-41052 Msa1335100:CDS 40.0%
TTAGGGCTTGAAAGGATGTT+TGG + tig0000051:40138-40157 None:intergenic 40.0%
!!! CACATGCATTTTGGGTTACA+TGG - tig0000051:40232-40251 Msa1335100:CDS 40.0%
AGCCATGATGTCAAATGCTT+TGG - tig0000051:40302-40321 Msa1335100:CDS 40.0%
! AAGATCCCTTTTGTGTTTGG+TGG - tig0000051:40630-40649 Msa1335100:CDS 40.0%
!! TGGAACAAAAAAGTGTTGGG+AGG - tig0000051:40650-40669 Msa1335100:CDS 40.0%
GCATCTGATCCATCAATGTA+AGG + tig0000051:40678-40697 None:intergenic 40.0%
! ACATTGATGGATCAGATGCT+AGG - tig0000051:40679-40698 Msa1335100:CDS 40.0%
ACAAGTTTGGCAAGAGATTG+TGG - tig0000051:40902-40921 Msa1335100:CDS 40.0%
CAAGAGATTGTGGAGGAAAA+TGG - tig0000051:40912-40931 Msa1335100:CDS 40.0%
!!! ATGATCTTGGTTTTGGAGCA+AGG - tig0000051:41033-41052 Msa1335100:CDS 40.0%
TCCAGTGACCCCAAAGATTA+TGG + tig0000051:40028-40047 None:intergenic 45.0%
! TGGCCCAAGTTTTACTTGGA+AGG - tig0000051:40782-40801 Msa1335100:CDS 45.0%
AGTTTGGCAAGAGATTGTGG+AGG - tig0000051:40905-40924 Msa1335100:CDS 45.0%
GATTGTGGAGGAAAATGGGT+TGG - tig0000051:40917-40936 Msa1335100:CDS 45.0%
TCCAGTGACCCCAAAGATTA+TGG + tig0000051:40028-40047 None:intergenic 45.0%
! TGGCCCAAGTTTTACTTGGA+AGG - tig0000051:40782-40801 Msa1335100:CDS 45.0%
AGTTTGGCAAGAGATTGTGG+AGG - tig0000051:40905-40924 Msa1335100:CDS 45.0%
GATTGTGGAGGAAAATGGGT+TGG - tig0000051:40917-40936 Msa1335100:CDS 45.0%
!! GCCATAATCTTTGGGGTCAC+TGG - tig0000051:40024-40043 Msa1335100:CDS 50.0%
! TTTGGGGTCACTGGACTTGT+TGG - tig0000051:40033-40052 Msa1335100:CDS 50.0%
! TTGGGGTCACTGGACTTGTT+GGG - tig0000051:40034-40053 Msa1335100:CDS 50.0%
TATTGGTCAGTGCATAGGCC+TGG - tig0000051:40525-40544 Msa1335100:CDS 50.0%
TGGGAGGAGCCTTACATTGA+TGG - tig0000051:40666-40685 Msa1335100:CDS 50.0%
!! GCCATAATCTTTGGGGTCAC+TGG - tig0000051:40024-40043 Msa1335100:CDS 50.0%
! TTTGGGGTCACTGGACTTGT+TGG - tig0000051:40033-40052 Msa1335100:CDS 50.0%
! TTGGGGTCACTGGACTTGTT+GGG - tig0000051:40034-40053 Msa1335100:CDS 50.0%
TATTGGTCAGTGCATAGGCC+TGG - tig0000051:40525-40544 Msa1335100:CDS 50.0%
TGGGAGGAGCCTTACATTGA+TGG - tig0000051:40666-40685 Msa1335100:CDS 50.0%
Chromosome Type Strat End Strand Name
tig0000051 gene 39994 41121 39994 ID=Msa1335100;Name=Msa1335100
tig0000051 mRNA 39994 41121 39994 ID=Msa1335100-mRNA-1;Parent=Msa1335100;Name=Msa1335100-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|375
tig0000051 exon 39994 41121 39994 ID=Msa1335100-mRNA-1:exon:13;Parent=Msa1335100-mRNA-1
tig0000051 CDS 39994 41121 39994 ID=Msa1335100-mRNA-1:cds;Parent=Msa1335100-mRNA-1
Gene Sequence

>Msa1335100

ATGGCAGCTACAAAGGAGAAAAATAATGTTGCCATAATCTTTGGGGTCACTGGACTTGTTGGGAGAGAGTTAGCTAAAAAACTAGTTTTAGAATCTTCTTGGAAAGTTTATGGTATAGCTAGAAAAAATCAAGAAACACAACCAAACATCCTTTCAAGCCCTAATTACAATTTCATCTCTTGTGATTTGCTTAACCCTTTAGAAACTCAAAAGAAGCTATCTTCATTACAAGATGTGACACATGCATTTTGGGTTACATGGGCTAGCCAATATCCATTAGACACACAAGAAAGTTGTGACCAAAACAAAGCCATGATGTCAAATGCTTTGGATTCATTGCTCACAAATGCAAAGAATCTAAAACATGTTTCACTTCAAACAGGTACAAAGCACTATGTATCACTTCAAGCCCCTTTTGATGAACAAAAGAAATTGTACTATTACAATGAAGAGTTTCCAAGAATAAGTAGAAGCTCAAATTTCTACTATGCATTGGAGGATTTGCTTGTCGAGAAATTGAATGGTAAGATTTATTGGTCAGTGCATAGGCCTGGTTTAATATTAGGAAATTCAATTAGATCATTTTATAATTTTATGGGTAGTTTGTGTGTTTATGGGTCTATTTGTAAACATTTGAAGATCCCTTTTGTGTTTGGTGGAACAAAAAAGTGTTGGGAGGAGCCTTACATTGATGGATCAGATGCTAGGCTTGTAGCTGATCAACATATTTGGTCAGCTACAAAAAGTACTATAGTTTCTACTAATGGAGAAGCTTTTAATTCAATTAATGGCCCAAGTTTTACTTGGAAGGAAATTTGGCCAATTGTTGGGAAAAAACTAGGGGCTATAGTTCCTCAAGAAATGTTTGTGGAAAATTTTTGGTATTCAAAGGCTATGATTGAGAAGCAACAAGTTTGGCAAGAGATTGTGGAGGAAAATGGGTTGGTCCAAACAAAAATTGAAAATTTAGCTAGTTGGGAATTTTTAGATGCTTTATTTAGATTCCCTATTAAACTTATGGGGAGTAGAGATAAAGTTGATGATCTTGGTTTTGGAGCAAGGTATAGAACATTGAATTCAATATTGTATTGGATTGAATGTATGAGAGATGAGAAGGTGATTCCTTAA

Protein sequence

>Msa1335100

MAATKEKNNVAIIFGVTGLVGRELAKKLVLESSWKVYGIARKNQETQPNILSSPNYNFISCDLLNPLETQKKLSSLQDVTHAFWVTWASQYPLDTQESCDQNKAMMSNALDSLLTNAKNLKHVSLQTGTKHYVSLQAPFDEQKKLYYYNEEFPRISRSSNFYYALEDLLVEKLNGKIYWSVHRPGLILGNSIRSFYNFMGSLCVYGSICKHLKIPFVFGGTKKCWEEPYIDGSDARLVADQHIWSATKSTIVSTNGEAFNSINGPSFTWKEIWPIVGKKLGAIVPQEMFVENFWYSKAMIEKQQVWQEIVEENGLVQTKIENLASWEFLDALFRFPIKLMGSRDKVDDLGFGARYRTLNSILYWIECMRDEKVIP*