AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0609790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0609790 MtrunA17_Chr4g0042741 96.296 189 7 0 1 189 1 189 8.08e-133 369
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 74 sgRNAs with CRISPR-Local

Find 575 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCGCAAATTTACCAATAT+TGG 0.193750 4_2:+57352290 None:intergenic
AATTGTGAGGGTGGCTTCTA+AGG 0.266560 4_2:-57358193 Msa0609790:CDS
ACCGCGTTGCAGCCCGCGTC+GGG 0.276137 4_2:+57358277 None:intergenic
GGCTGCAACGCGGTTGGATT+GGG 0.277741 4_2:-57358268 Msa0609790:CDS
AAACAACAATATTGAAGTTC+AGG 0.324417 4_2:-57358415 Msa0609790:CDS
AATGTTGAAACTATAGTTGT+AGG 0.330315 4_2:-57358522 Msa0609790:five_prime_UTR
GGGCTGCAACGCGGTTGGAT+TGG 0.330424 4_2:-57358269 Msa0609790:CDS
ATCATCACGTCGCAAGGTTC+AGG 0.345575 4_2:-57352350 Msa0609790:CDS
GTATCACTATTACAATTTGC+AGG 0.370713 4_2:-57352165 Msa0609790:three_prime_UTR
ATTGCAGAGTCAACCAATAT+TGG 0.382743 4_2:-57352303 Msa0609790:three_prime_UTR
TGGTCAATTACGTGCGTGGC+TGG 0.395524 4_2:-57358138 Msa0609790:CDS
ATTCCGAACCGTCCACCTTC+CGG 0.399012 4_2:+57358064 None:intergenic
TTGTAAAGTGTATATGAGTT+TGG 0.406289 4_2:-57352247 Msa0609790:three_prime_UTR
CGTAACTATGCAATGTGTGC+GGG 0.429868 4_2:-57358168 Msa0609790:CDS
ACGGTTCGGAATATCTTCTT+AGG 0.438601 4_2:-57358053 Msa0609790:CDS
TTACGGTAATATTTATATGC+AGG 0.450893 4_2:+57352215 None:intergenic
AGGAAATTCCTTCTTCATGA+TGG 0.453632 4_2:+57358346 None:intergenic
GAAGAAGAAGAACAAGAAGA+AGG 0.463375 4_2:+57358378 None:intergenic
TCGCCGGAAGGTGGACGGTT+CGG 0.463920 4_2:-57358067 Msa0609790:CDS
AACCGCGTTGCAGCCCGCGT+CGG 0.468668 4_2:+57358276 None:intergenic
GTTCAGGTGCATCGAATTAG+TGG 0.469483 4_2:-57352334 Msa0609790:CDS
AACCTTGCGACGTGATGATA+AGG 0.469622 4_2:+57352354 None:intergenic
TGTAGCTGTGACGGCGGTGT+TGG 0.471963 4_2:-57358112 Msa0609790:CDS
CGGCGGTGTTGGTTTACGTC+GGG 0.474783 4_2:-57358101 Msa0609790:CDS
GACGCGGGCTGCAACGCGGT+TGG 0.485105 4_2:-57358274 Msa0609790:CDS
TGGTTTACGTCGGGATTCAA+AGG 0.489575 4_2:-57358092 Msa0609790:CDS
AACGGAACTTGACGCCGTCA+TGG 0.509958 4_2:+57358320 None:intergenic
TTCACCTTCCTCGCCACCAA+CGG 0.518986 4_2:+57358302 None:intergenic
TGAAATGAATAAGATGTTGA+AGG 0.521333 4_2:-57358241 Msa0609790:CDS
CACACCACTCTCGAATCCTC+TGG 0.521436 4_2:-57358462 Msa0609790:CDS
TCGGGATTCAAAGGCGTCGC+CGG 0.522229 4_2:-57358083 Msa0609790:CDS
ACGGCGTCAAGTTCCGTTGG+TGG 0.523122 4_2:-57358315 Msa0609790:CDS
AACAACAATATTGAAGTTCA+GGG 0.523883 4_2:-57358414 Msa0609790:CDS
ACGGAACTTGACGCCGTCAT+GGG 0.524511 4_2:+57358321 None:intergenic
AGTTCCGTTGGTGGCGAGGA+AGG 0.531811 4_2:-57358306 Msa0609790:CDS
GTCAAGTTCCGTTGGTGGCG+AGG 0.531974 4_2:-57358310 Msa0609790:CDS
CCGCGTTGCAGCCCGCGTCG+GGG 0.537525 4_2:+57358278 None:intergenic
ACTTGACGCCGTCATGGGCG+AGG 0.539198 4_2:+57358326 None:intergenic
TCAAAGGCGTCGCCGGAAGG+TGG 0.547716 4_2:-57358076 Msa0609790:CDS
CCCCGACGCGGGCTGCAACG+CGG 0.549132 4_2:-57358278 Msa0609790:CDS
GTGCAATATTAAGCAAGAGT+TGG 0.550580 4_2:+57352389 None:intergenic
GGAAATTCCTTCTTCATGAT+GGG 0.551150 4_2:+57358347 None:intergenic
TAAGATGTTGAAGGTGCGGA+TGG 0.561256 4_2:-57358232 Msa0609790:CDS
TTCTTCATGATGGGTAGGAG+TGG 0.563504 4_2:+57358356 None:intergenic
GGAAGGTGAAGCCCCGACGC+GGG 0.567663 4_2:-57358289 Msa0609790:CDS
GGCTGGAGCTGTAGCTGTGA+CGG 0.568693 4_2:-57358121 Msa0609790:CDS
ACTCCTACCCATCATGAAGA+AGG 0.569002 4_2:-57358354 Msa0609790:CDS
ATTCCTTCTTCATGATGGGT+AGG 0.572462 4_2:+57358351 None:intergenic
ATGACGGCGTCAAGTTCCGT+TGG 0.572657 4_2:-57358318 Msa0609790:CDS
GATTCAAAGGCGTCGCCGGA+AGG 0.574232 4_2:-57358079 Msa0609790:CDS
AGGAATTTCCTCGCCCATGA+CGG 0.575563 4_2:-57358334 Msa0609790:CDS
ACGGCGGTGTTGGTTTACGT+CGG 0.576717 4_2:-57358102 Msa0609790:CDS
AGGCGTCGCCGGAAGGTGGA+CGG 0.577749 4_2:-57358072 Msa0609790:CDS
GTAACTATGCAATGTGTGCG+GGG 0.581011 4_2:-57358167 Msa0609790:CDS
TGAAACTATAGTTGTAGGCA+TGG 0.582478 4_2:-57358517 Msa0609790:exon
AGCCTTATCATCACGTCGCA+AGG 0.587604 4_2:-57352356 Msa0609790:CDS
CCACTCTCGAATCCTCTGGA+TGG 0.589063 4_2:-57358458 Msa0609790:CDS
GAAGAAGAACAAGAAGAAGG+AGG 0.590130 4_2:+57358381 None:intergenic
GATTATTCTGTTCCATCCAG+AGG 0.593351 4_2:+57358446 None:intergenic
GATGTTGAAGGTGCGGATGG+AGG 0.600823 4_2:-57358229 Msa0609790:CDS
GCGGATGGAGGCTATGAGAG+TGG 0.619387 4_2:-57358217 Msa0609790:CDS
ACAATATTGAAGTTCAGGGA+GGG 0.623670 4_2:-57358410 Msa0609790:CDS
TCGTAACTATGCAATGTGTG+CGG 0.627278 4_2:-57358169 Msa0609790:CDS
CCATCCAGAGGATTCGAGAG+TGG 0.631254 4_2:+57358458 None:intergenic
TGGAGCTGTAGCTGTGACGG+CGG 0.631922 4_2:-57358118 Msa0609790:CDS
AACAATATTGAAGTTCAGGG+AGG 0.646038 4_2:-57358411 Msa0609790:CDS
TAACTATGCAATGTGTGCGG+GGG 0.646393 4_2:-57358166 Msa0609790:CDS
TGAATAAGATGTTGAAGGTG+CGG 0.652058 4_2:-57358236 Msa0609790:CDS
AGGAAGGTGAAGCCCCGACG+CGG 0.653291 4_2:-57358290 Msa0609790:CDS
AACTATAGTTGTAGGCATGG+AGG 0.654916 4_2:-57358514 Msa0609790:exon
CTATGAGAGTGGAAATTGTG+AGG 0.658550 4_2:-57358206 Msa0609790:CDS
GAGAGTGGAAATTGTGAGGG+TGG 0.678186 4_2:-57358202 Msa0609790:CDS
TATGAGAGTGGAAATTGTGA+GGG 0.682385 4_2:-57358205 Msa0609790:CDS
GCATGGAGGAAATAAACGAG+TGG 0.717528 4_2:-57358500 Msa0609790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATAAAATTAATAAA+AGG + chr4_2:57353109-57353128 None:intergenic 0.0%
!! TTGATAAAATAAAATATGTT+TGG - chr4_2:57352981-57353000 Msa0609790:intron 10.0%
!!! TTATTAAAATTAAAAGTGTT+TGG + chr4_2:57353704-57353723 None:intergenic 10.0%
!!! TTTAGTTTATTTAATGAAAA+CGG - chr4_2:57358085-57358104 Msa0609790:CDS 10.0%
!! AAAGAAGAAATAATAATTTC+CGG + chr4_2:57352681-57352700 None:intergenic 15.0%
!! AATTAATAAAAGGTCAAAAT+TGG + chr4_2:57353099-57353118 None:intergenic 15.0%
!!! CTTTGTTTTATAAAATTACT+GGG + chr4_2:57353305-57353324 None:intergenic 15.0%
!!! TCTTTGTTTTATAAAATTAC+TGG + chr4_2:57353306-57353325 None:intergenic 15.0%
!!! TCTTTGTTTTTTTTTTTGAA+GGG + chr4_2:57353361-57353380 None:intergenic 15.0%
!! TAAATATAAAATGACGTAAA+AGG + chr4_2:57353656-57353675 None:intergenic 15.0%
!!! TAAAAGTTTTGCTTAAAAAT+TGG + chr4_2:57354240-57354259 None:intergenic 15.0%
!!! TAAAAGTTTTGCTTAAAAAT+TGG + chr4_2:57354240-57354259 None:intergenic 15.0%
!! CATTAAATAAACTAAAGTAA+TGG + chr4_2:57358081-57358100 None:intergenic 15.0%
!!! TTTAATAGAATTTTGAATCA+AGG - chr4_2:57358190-57358209 Msa0609790:CDS 15.0%
!!! TTTTTTTCTCTTCGATAAAA+GGG - chr4_2:57352792-57352811 Msa0609790:intron 20.0%
!! TATTAAGTTTGTATGTAGTT+TGG + chr4_2:57352829-57352848 None:intergenic 20.0%
!!! GTCTTTGTTTTTTTTTTTGA+AGG + chr4_2:57353362-57353381 None:intergenic 20.0%
!!! TAGAAATCAACATATTTTTG+CGG + chr4_2:57357355-57357374 None:intergenic 20.0%
!! TATAAGATCTATATGTGATA+TGG + chr4_2:57357611-57357630 None:intergenic 20.0%
!! AAAGAATAAAATGCTTTCTT+TGG + chr4_2:57357673-57357692 None:intergenic 20.0%
!!! TTATGCTTATCAAATTTTGT+TGG - chr4_2:57358256-57358275 Msa0609790:CDS 20.0%
! AATGTTGAAACTATAGTTGT+AGG - chr4_2:57352159-57352178 Msa0609790:three_prime_UTR 25.0%
! AAACAACAATATTGAAGTTC+AGG - chr4_2:57352266-57352285 Msa0609790:three_prime_UTR 25.0%
! AACAACAATATTGAAGTTCA+GGG - chr4_2:57352267-57352286 Msa0609790:three_prime_UTR 25.0%
! TGAAATGAATAAGATGTTGA+AGG - chr4_2:57352440-57352459 Msa0609790:intron 25.0%
! GATCAGAATTCTAATTACTA+TGG + chr4_2:57352715-57352734 None:intergenic 25.0%
!! CTTTTATCGAAGAGAAAAAA+AGG + chr4_2:57352793-57352812 None:intergenic 25.0%
!!! CTTTTTTTCTCTTCGATAAA+AGG - chr4_2:57352791-57352810 Msa0609790:intron 25.0%
!!! ACATGTTTTAAAACTACTAC+TGG + chr4_2:57353246-57353265 None:intergenic 25.0%
! TTATGCACTTTCAATTCATA+CGG + chr4_2:57353861-57353880 None:intergenic 25.0%
! ATGCCTATAAATATGAGAAA+GGG - chr4_2:57353910-57353929 Msa0609790:intron 25.0%
! TTACCCTTTCTCATATTTAT+AGG + chr4_2:57353916-57353935 None:intergenic 25.0%
!! AATAACAGAAACGTATTTTC+TGG - chr4_2:57354202-57354221 Msa0609790:intron 25.0%
! TCTTAAAATAGTCTGATACA+AGG + chr4_2:57354276-57354295 None:intergenic 25.0%
!!! ACTATTTTAAGAGAGATAGA+AGG - chr4_2:57354284-57354303 Msa0609790:intron 25.0%
!!! CTATTTTAAGAGAGATAGAA+GGG - chr4_2:57354285-57354304 Msa0609790:intron 25.0%
! TTTGTATATGACAAAGTCTT+TGG - chr4_2:57355049-57355068 Msa0609790:intron 25.0%
! TTAAACGATTCAAAAGATCT+AGG + chr4_2:57355239-57355258 None:intergenic 25.0%
!! AATAACAGAAACGTATTTTC+TGG - chr4_2:57354202-57354221 Msa0609790:intron 25.0%
! TCTTAAAATAGTCTGATACA+AGG + chr4_2:57354276-57354295 None:intergenic 25.0%
!!! ACTATTTTAAGAGAGATAGA+AGG - chr4_2:57354284-57354303 Msa0609790:intron 25.0%
!!! CTATTTTAAGAGAGATAGAA+GGG - chr4_2:57354285-57354304 Msa0609790:intron 25.0%
! TGTTAAATGTAATACACATG+GGG + chr4_2:57357191-57357210 None:intergenic 25.0%
! GTGTTAAATGTAATACACAT+GGG + chr4_2:57357192-57357211 None:intergenic 25.0%
! AGTGTTAAATGTAATACACA+TGG + chr4_2:57357193-57357212 None:intergenic 25.0%
!!! AGAAATCAACATATTTTTGC+GGG + chr4_2:57357354-57357373 None:intergenic 25.0%
! GAAAATAATAACCTAGCATT+TGG + chr4_2:57357405-57357424 None:intergenic 25.0%
! TTGGAATAATGTTTGGAAAT+GGG + chr4_2:57357704-57357723 None:intergenic 25.0%
! ATCGTCTAATTACTATTGTT+AGG - chr4_2:57357747-57357766 Msa0609790:intron 25.0%
! CAATCTTCTCATTTATATGT+TGG - chr4_2:57357918-57357937 Msa0609790:intron 25.0%
! TGGCTTATTGAAAAAGTAAT+TGG - chr4_2:57358164-57358183 Msa0609790:CDS 25.0%
! GATAAGCATAACATTTAATG+TGG + chr4_2:57358247-57358266 None:intergenic 25.0%
! ATATGTAGCCAAAAAATTCA+AGG + chr4_2:57358415-57358434 None:intergenic 25.0%
! TTGTAAAGTGTATATGAGTT+TGG - chr4_2:57358434-57358453 Msa0609790:CDS 25.0%
! TTACGGTAATATTTATATGC+AGG + chr4_2:57358469-57358488 None:intergenic 25.0%
AAAAAGATGAGGTGAGTATA+TGG - chr4_2:57352652-57352671 Msa0609790:intron 30.0%
AGTTTATACCACAAGAATGT+GGG + chr4_2:57353151-57353170 None:intergenic 30.0%
!! CGATGCATAGTTGATTTTTA+AGG + chr4_2:57353270-57353289 None:intergenic 30.0%
ATACGGGTACTTACTATTTA+GGG + chr4_2:57353844-57353863 None:intergenic 30.0%
TATGCACTTTCAATTCATAC+GGG + chr4_2:57353860-57353879 None:intergenic 30.0%
CATGCCTATAAATATGAGAA+AGG - chr4_2:57353909-57353928 Msa0609790:intron 30.0%
CAGTATCTTTGGTTAATAAG+GGG + chr4_2:57354009-57354028 None:intergenic 30.0%
GCAGTATCTTTGGTTAATAA+GGG + chr4_2:57354010-57354029 None:intergenic 30.0%
TGCAGTATCTTTGGTTAATA+AGG + chr4_2:57354011-57354030 None:intergenic 30.0%
GTGAGAGTTAACTTAAAATC+AGG - chr4_2:57354048-57354067 Msa0609790:intron 30.0%
TTTGTATAGAGTTTGTCTCT+TGG - chr4_2:57354347-57354366 Msa0609790:intron 30.0%
AAACAACAGCGAAAGAAAAA+AGG + chr4_2:57354604-57354623 None:intergenic 30.0%
!! TGTTCCATACACTTTGATTT+TGG - chr4_2:57354646-57354665 Msa0609790:intron 30.0%
AAAGGATAATCAAGTACCAT+GGG - chr4_2:57354765-57354784 Msa0609790:intron 30.0%
TTTAAAGATACCATGCTCTA+TGG - chr4_2:57355254-57355273 Msa0609790:intron 30.0%
! AATGCTTTAAGTGTACAAGA+TGG - chr4_2:57355447-57355466 Msa0609790:intron 30.0%
! ATGCTTTAAGTGTACAAGAT+GGG - chr4_2:57355448-57355467 Msa0609790:intron 30.0%
TAAGAATACTCATGATCTAC+CGG - chr4_2:57355705-57355724 Msa0609790:intron 30.0%
GAATTACCCTAAAAATCCAA+GGG - chr4_2:57355938-57355957 Msa0609790:intron 30.0%
GTGAGAGTTAACTTAAAATC+AGG - chr4_2:57354048-57354067 Msa0609790:intron 30.0%
TTTGTATAGAGTTTGTCTCT+TGG - chr4_2:57354347-57354366 Msa0609790:intron 30.0%
AAACAACAGCGAAAGAAAAA+AGG + chr4_2:57354604-57354623 None:intergenic 30.0%
!! TGTTCCATACACTTTGATTT+TGG - chr4_2:57354646-57354665 Msa0609790:intron 30.0%
ACAACCAAAATCAAAGTGTA+TGG + chr4_2:57356920-57356939 None:intergenic 30.0%
TGTTATAGCTAGTAATCACA+AGG + chr4_2:57357167-57357186 None:intergenic 30.0%
CATTTAACACTTCCTCTATA+CGG - chr4_2:57357202-57357221 Msa0609790:intron 30.0%
!! ATTCTATAATTCAGGTTGAG+TGG + chr4_2:57357234-57357253 None:intergenic 30.0%
AGGTCAGTATTCTATAATTC+AGG + chr4_2:57357242-57357261 None:intergenic 30.0%
! TTTTTCTAATCAGCCTAATC+AGG + chr4_2:57357482-57357501 None:intergenic 30.0%
! ATCTTCGCTTCATATTTTGT+GGG + chr4_2:57357548-57357567 None:intergenic 30.0%
! AATCTTCGCTTCATATTTTG+TGG + chr4_2:57357549-57357568 None:intergenic 30.0%
AATAATGTTTGGAAATGGGA+GGG + chr4_2:57357700-57357719 None:intergenic 30.0%
CTTGGAATAATGTTTGGAAA+TGG + chr4_2:57357705-57357724 None:intergenic 30.0%
TTCCAAACATTATTCCAAGT+AGG - chr4_2:57357706-57357725 Msa0609790:intron 30.0%
GTCTAATTACTATTGTTAGG+AGG - chr4_2:57357750-57357769 Msa0609790:intron 30.0%
!!! TTTTTTCATCCAAGTGAGAA+TGG - chr4_2:57357952-57357971 Msa0609790:intron 30.0%
ATGTATCTTCACTGTATGTT+TGG - chr4_2:57358028-57358047 Msa0609790:intron 30.0%
GAGTGAAATTTGTATATCGA+TGG - chr4_2:57358144-57358163 Msa0609790:CDS 30.0%
!!! ATTTGCGACCTTGAATTTTT+TGG - chr4_2:57358404-57358423 Msa0609790:CDS 30.0%
GTATCACTATTACAATTTGC+AGG - chr4_2:57358516-57358535 Msa0609790:exon 30.0%
TGAAACTATAGTTGTAGGCA+TGG - chr4_2:57352164-57352183 Msa0609790:three_prime_UTR 35.0%
AACAATATTGAAGTTCAGGG+AGG - chr4_2:57352270-57352289 Msa0609790:three_prime_UTR 35.0%
ACAATATTGAAGTTCAGGGA+GGG - chr4_2:57352271-57352290 Msa0609790:three_prime_UTR 35.0%
GAAGAAGAAGAACAAGAAGA+AGG + chr4_2:57352306-57352325 None:intergenic 35.0%
GGAAATTCCTTCTTCATGAT+GGG + chr4_2:57352337-57352356 None:intergenic 35.0%
AGGAAATTCCTTCTTCATGA+TGG + chr4_2:57352338-57352357 None:intergenic 35.0%
TGAATAAGATGTTGAAGGTG+CGG - chr4_2:57352445-57352464 Msa0609790:intron 35.0%
TATGAGAGTGGAAATTGTGA+GGG - chr4_2:57352476-57352495 Msa0609790:intron 35.0%
TCTTCTTAGGCAAAAAGATG+AGG - chr4_2:57352641-57352660 Msa0609790:intron 35.0%
TTGTATGTAGTTTGGCCTAA+CGG + chr4_2:57352821-57352840 None:intergenic 35.0%
AAAATGTTAACACAATCCGC+TGG - chr4_2:57352884-57352903 Msa0609790:intron 35.0%
! AAAGCTAGCTTATAGCTTGT+TGG - chr4_2:57352939-57352958 Msa0609790:intron 35.0%
CAAAAAACGCTATAAGCTAG+TGG + chr4_2:57353020-57353039 None:intergenic 35.0%
AAAAAACACCCACATTCTTG+TGG - chr4_2:57353140-57353159 Msa0609790:intron 35.0%
CAGTTTATACCACAAGAATG+TGG + chr4_2:57353152-57353171 None:intergenic 35.0%
GATCAGTATAATAGCAACCT+CGG - chr4_2:57353220-57353239 Msa0609790:intron 35.0%
AAAATTACTGGGCGCAATAT+TGG + chr4_2:57353294-57353313 None:intergenic 35.0%
! TTACTATTTAGGGGTGTGTT+TGG + chr4_2:57353834-57353853 None:intergenic 35.0%
TACGGGTACTTACTATTTAG+GGG + chr4_2:57353843-57353862 None:intergenic 35.0%
CATACGGGTACTTACTATTT+AGG + chr4_2:57353845-57353864 None:intergenic 35.0%
TATTTATAGGCATGCAAACC+AGG + chr4_2:57353903-57353922 None:intergenic 35.0%
CATGTCAATCCTTCATGATA+AGG - chr4_2:57353936-57353955 Msa0609790:intron 35.0%
CATTAATCGCCTTATCATGA+AGG + chr4_2:57353948-57353967 None:intergenic 35.0%
TCATGATAAGGCGATTAATG+AGG - chr4_2:57353948-57353967 Msa0609790:intron 35.0%
CATGATAAGGCGATTAATGA+GGG - chr4_2:57353949-57353968 Msa0609790:intron 35.0%
GAAAATCAAAGATGAGTCGA+GGG - chr4_2:57353980-57353999 Msa0609790:intron 35.0%
TAACTCTCACAAATCTGACT+CGG + chr4_2:57354038-57354057 None:intergenic 35.0%
AGAAAGGCAACAACAAAACT+AGG - chr4_2:57354323-57354342 Msa0609790:intron 35.0%
GAAAGGCAACAACAAAACTA+GGG - chr4_2:57354324-57354343 Msa0609790:intron 35.0%
!! GCAACAAAACTAGGTTTTGT+GGG - chr4_2:57354369-57354388 Msa0609790:intron 35.0%
AATCCTAATAGTGTTTCCCA+AGG + chr4_2:57354403-57354422 None:intergenic 35.0%
ACTATTAGGATTGAGTCTCT+TGG - chr4_2:57354411-57354430 Msa0609790:intron 35.0%
TAACGCTACTCATCATATAG+TGG - chr4_2:57354501-57354520 Msa0609790:intron 35.0%
! CTACTCATCATATAGTGGAA+CGG - chr4_2:57354506-57354525 Msa0609790:intron 35.0%
!! AAGAATTTGTTGACCCAGTT+CGG + chr4_2:57354568-57354587 None:intergenic 35.0%
!!! TCGCTGTTGTTTTCTACTTT+TGG - chr4_2:57354612-57354631 Msa0609790:intron 35.0%
GCAACCAAAATCAAAGTGTA+TGG + chr4_2:57354653-57354672 None:intergenic 35.0%
! TCCACACATCAAGTTGTTAT+TGG - chr4_2:57354688-57354707 Msa0609790:intron 35.0%
ACCAATAACAACTTGATGTG+TGG + chr4_2:57354692-57354711 None:intergenic 35.0%
! ACATCAAGTTGTTATTGGTG+TGG - chr4_2:57354693-57354712 Msa0609790:intron 35.0%
CAAAGGATAATCAAGTACCA+TGG - chr4_2:57354764-57354783 Msa0609790:intron 35.0%
TGGGATATTGAGAAGTTTAC+CGG - chr4_2:57354795-57354814 Msa0609790:intron 35.0%
! TTTACCGGAGATAACGATTT+TGG - chr4_2:57354810-57354829 Msa0609790:intron 35.0%
! TTACCGGAGATAACGATTTT+GGG - chr4_2:57354811-57354830 Msa0609790:intron 35.0%
TAACCCAAAATCGTTATCTC+CGG + chr4_2:57354817-57354836 None:intergenic 35.0%
!!! GAGATAACGATTTTGGGTTA+TGG - chr4_2:57354817-57354836 Msa0609790:intron 35.0%
!!! TAACGATTTTGGGTTATGGA+AGG - chr4_2:57354821-57354840 Msa0609790:intron 35.0%
! AAAGTGTGAGAAAGCTTTGA+AGG - chr4_2:57354872-57354891 Msa0609790:intron 35.0%
!! AAGTGTGAGAAAGCTTTGAA+GGG - chr4_2:57354873-57354892 Msa0609790:intron 35.0%
!! ATGAGTAGAGTTGTTGCTTT+AGG + chr4_2:57355088-57355107 None:intergenic 35.0%
ACAACTCTACTCATTCAAGA+TGG - chr4_2:57355094-57355113 Msa0609790:intron 35.0%
! CAACAAAATCCTTGATGACT+TGG - chr4_2:57355154-57355173 Msa0609790:intron 35.0%
CAATATTCTCCAAGTCATCA+AGG + chr4_2:57355166-57355185 None:intergenic 35.0%
! TGATGACTTGGAGAATATTG+AGG - chr4_2:57355166-57355185 Msa0609790:intron 35.0%
GAATATTGAGGTGAATCTTG+AGG - chr4_2:57355178-57355197 Msa0609790:intron 35.0%
!! GACTTGAGAGTTGATGAAAA+CGG - chr4_2:57355347-57355366 Msa0609790:intron 35.0%
!! ACTTGAGAGTTGATGAAAAC+GGG - chr4_2:57355348-57355367 Msa0609790:intron 35.0%
ACGGAATTACCATTAATCTC+CGG + chr4_2:57355493-57355512 None:intergenic 35.0%
TTCAAGGTTGAAGACATAGT+GGG - chr4_2:57355740-57355759 Msa0609790:intron 35.0%
AAGGGATTTCTTCATGAAGA+CGG - chr4_2:57355874-57355893 Msa0609790:intron 35.0%
AGGTTGAAGAATGTATAGCA+CGG - chr4_2:57355909-57355928 Msa0609790:intron 35.0%
GGAATTACCCTAAAAATCCA+AGG - chr4_2:57355937-57355956 Msa0609790:intron 35.0%
! CAATCACCCTTGGATTTTTA+GGG + chr4_2:57355947-57355966 None:intergenic 35.0%
CAAACTACACTAGGAATTTC+AGG + chr4_2:57356042-57356061 None:intergenic 35.0%
CTGAAATTCCTAGTGTAGTT+TGG - chr4_2:57356040-57356059 Msa0609790:intron 35.0%
TTCCGATGATTGAAGAAGTT+AGG - chr4_2:57356189-57356208 Msa0609790:intron 35.0%
TCCGATGATTGAAGAAGTTA+GGG - chr4_2:57356190-57356209 Msa0609790:intron 35.0%
ACCCTAACTTCTTCAATCAT+CGG + chr4_2:57356194-57356213 None:intergenic 35.0%
GAAGTTAGGGTTTAAACTTG+TGG - chr4_2:57356203-57356222 Msa0609790:intron 35.0%
TTTAAACTTGTGGAGCTACT+TGG - chr4_2:57356213-57356232 Msa0609790:intron 35.0%
TTGACTTCAAATCAGTGATG+AGG + chr4_2:57356286-57356305 None:intergenic 35.0%
!! TCATCACTGATTTGAAGTCA+AGG - chr4_2:57356285-57356304 Msa0609790:intron 35.0%
AGAAAGGCAACAACAAAACT+AGG - chr4_2:57354323-57354342 Msa0609790:intron 35.0%
GAAAGGCAACAACAAAACTA+GGG - chr4_2:57354324-57354343 Msa0609790:intron 35.0%
!! GCAACAAAACTAGGTTTTGT+GGG - chr4_2:57354369-57354388 Msa0609790:intron 35.0%
AATCCTAATAGTGTTTCCCA+AGG + chr4_2:57354403-57354422 None:intergenic 35.0%
ACTATTAGGATTGAGTCTCT+TGG - chr4_2:57354411-57354430 Msa0609790:intron 35.0%
TAACGCTACTCATCATATAG+TGG - chr4_2:57354501-57354520 Msa0609790:intron 35.0%
! CTACTCATCATATAGTGGAA+CGG - chr4_2:57354506-57354525 Msa0609790:intron 35.0%
!!! TCGCTGTTGTTTTCTACTTT+TGG - chr4_2:57354612-57354631 Msa0609790:intron 35.0%
! TCCACACATCAAGTTGTTAT+TGG - chr4_2:57354688-57354707 Msa0609790:intron 35.0%
ACCAATAACAACTTGATGTG+TGG + chr4_2:57354692-57354711 None:intergenic 35.0%
! ACATCAAGTTGTTATTGGTG+TGG - chr4_2:57354693-57354712 Msa0609790:intron 35.0%
CTTTCTCTTGAATCTTGTTG+AGG + chr4_2:57357000-57357019 None:intergenic 35.0%
GTGTTCATGTCAAAACTTTG+GGG + chr4_2:57357069-57357088 None:intergenic 35.0%
GGTGTTCATGTCAAAACTTT+GGG + chr4_2:57357070-57357089 None:intergenic 35.0%
!!! CCGAAATTTGGGCTATTTTT+CGG + chr4_2:57357091-57357110 None:intergenic 35.0%
CCGAAAAATAGCCCAAATTT+CGG - chr4_2:57357088-57357107 Msa0609790:intron 35.0%
TTAGAGATGAATCAAGTGTG+TGG + chr4_2:57357128-57357147 None:intergenic 35.0%
! TGTGGGAATTTTGCATACTT+TGG - chr4_2:57357268-57357287 Msa0609790:intron 35.0%
! GTGGGAATTTTGCATACTTT+GGG - chr4_2:57357269-57357288 Msa0609790:intron 35.0%
ATTCAGCCAGATATACCAAA+TGG - chr4_2:57357374-57357393 Msa0609790:intron 35.0%
GCATAACCATTTGGTATATC+TGG + chr4_2:57357383-57357402 None:intergenic 35.0%
TAGCATTTGGCATAACCATT+TGG + chr4_2:57357392-57357411 None:intergenic 35.0%
AAATGGTTATGCCAAATGCT+AGG - chr4_2:57357391-57357410 Msa0609790:intron 35.0%
GTGTGAAAATTCAAGCAATG+TGG + chr4_2:57357522-57357541 None:intergenic 35.0%
ATAATGTTTGGAAATGGGAG+GGG + chr4_2:57357699-57357718 None:intergenic 35.0%
GAATAATGTTTGGAAATGGG+AGG + chr4_2:57357701-57357720 None:intergenic 35.0%
TGCCTACTTGGAATAATGTT+TGG + chr4_2:57357711-57357730 None:intergenic 35.0%
ATACCATTGTTGAGTCATGA+GGG - chr4_2:57357801-57357820 Msa0609790:intron 35.0%
TGTGAATATGTCATGCGAAA+AGG - chr4_2:57358221-57358240 Msa0609790:CDS 35.0%
GTGCAATATTAAGCAAGAGT+TGG + chr4_2:57358295-57358314 None:intergenic 35.0%
ATTGCAGAGTCAACCAATAT+TGG - chr4_2:57358378-57358397 Msa0609790:CDS 35.0%
GGTCGCAAATTTACCAATAT+TGG + chr4_2:57358394-57358413 None:intergenic 35.0%
AACTATAGTTGTAGGCATGG+AGG - chr4_2:57352167-57352186 Msa0609790:three_prime_UTR 40.0%
GATTATTCTGTTCCATCCAG+AGG + chr4_2:57352238-57352257 None:intergenic 40.0%
GAAGAAGAACAAGAAGAAGG+AGG + chr4_2:57352303-57352322 None:intergenic 40.0%
!! ATTCCTTCTTCATGATGGGT+AGG + chr4_2:57352333-57352352 None:intergenic 40.0%
CTATGAGAGTGGAAATTGTG+AGG - chr4_2:57352475-57352494 Msa0609790:intron 40.0%
TCGTAACTATGCAATGTGTG+CGG - chr4_2:57352512-57352531 Msa0609790:intron 40.0%
! ACGGTTCGGAATATCTTCTT+AGG - chr4_2:57352628-57352647 Msa0609790:intron 40.0%
ATGAGGATGCATGACAACAT+GGG + chr4_2:57353185-57353204 None:intergenic 40.0%
ATACTGATCCTCTTTGTCCA+GGG + chr4_2:57353209-57353228 None:intergenic 40.0%
TATACTGATCCTCTTTGTCC+AGG + chr4_2:57353210-57353229 None:intergenic 40.0%
! TTTAAAACTACTACTGGCCG+AGG + chr4_2:57353240-57353259 None:intergenic 40.0%
! CTGAAAAGCTAGCTTATAGC+TGG + chr4_2:57353764-57353783 None:intergenic 40.0%
CGAAAATCAAAGATGAGTCG+AGG - chr4_2:57353979-57353998 Msa0609790:intron 40.0%
ACGAAATTCTTCAACCATCG+TGG + chr4_2:57354114-57354133 None:intergenic 40.0%
GATGGTTGAAGAATTTCGTG+AGG - chr4_2:57354115-57354134 Msa0609790:intron 40.0%
AGATAGAAGGGCTGAAACAA+GGG - chr4_2:57354297-57354316 Msa0609790:intron 40.0%
GCTGAAACAAGGGTTTAGAA+AGG - chr4_2:57354307-57354326 Msa0609790:intron 40.0%
TGTCTCTTGGCAACAAAACT+AGG - chr4_2:57354360-57354379 Msa0609790:intron 40.0%
! GGCAACAAAACTAGGTTTTG+TGG - chr4_2:57354368-57354387 Msa0609790:intron 40.0%
!!! TTTTGTGGGTTGATTCACCT+TGG - chr4_2:57354383-57354402 Msa0609790:intron 40.0%
!! TTTGTGGGTTGATTCACCTT+GGG - chr4_2:57354384-57354403 Msa0609790:intron 40.0%
TCACCTTGGGAAACACTATT+AGG - chr4_2:57354397-57354416 Msa0609790:intron 40.0%
AGGATTGAGTCTCTTGGTTA+CGG - chr4_2:57354417-57354436 Msa0609790:intron 40.0%
TGAGTAGCGTTACAAAGAGA+TGG + chr4_2:57354493-57354512 None:intergenic 40.0%
! TCATCATATAGTGGAACGGA+GGG - chr4_2:57354510-57354529 Msa0609790:intron 40.0%
CTCATCGAATCCTCAACAAT+TGG - chr4_2:57354720-57354739 Msa0609790:intron 40.0%
TGGGTTATGGAAGGTAAAGA+TGG - chr4_2:57354830-57354849 Msa0609790:intron 40.0%
ATGGAAGGTAAAGATGGAAG+CGG - chr4_2:57354836-57354855 Msa0609790:intron 40.0%
AGTCTTGAGAGAAGTAGCAA+AGG - chr4_2:57354989-57355008 Msa0609790:intron 40.0%
! TGACAAAGTCTTTGGCTCAT+CGG - chr4_2:57355057-57355076 Msa0609790:intron 40.0%
ACTCTACTCATTCAAGATGG+TGG - chr4_2:57355097-57355116 Msa0609790:intron 40.0%
!! ATTCAAGATGGTGGAGTCAA+AGG - chr4_2:57355106-57355125 Msa0609790:intron 40.0%
ACCATGCTCTATGGAAAAGA+AGG - chr4_2:57355263-57355282 Msa0609790:intron 40.0%
!! AAAAGAAGGCACTGTTACCT+TGG - chr4_2:57355277-57355296 Msa0609790:intron 40.0%
!! CTTGAGAGTTGATGAAAACG+GGG - chr4_2:57355349-57355368 Msa0609790:intron 40.0%
AAGGCCTAAGTGTTTCAAGA+GGG - chr4_2:57355372-57355391 Msa0609790:intron 40.0%
CATTCCCTCTTGAAACACTT+AGG + chr4_2:57355379-57355398 None:intergenic 40.0%
CTAAGTGTTTCAAGAGGGAA+TGG - chr4_2:57355377-57355396 Msa0609790:intron 40.0%
TCTTGTTACTACTCTTTCCC+CGG + chr4_2:57355418-57355437 None:intergenic 40.0%
TCACTTCAAGAAGGATTGTC+CGG - chr4_2:57355471-57355490 Msa0609790:intron 40.0%
AAGGATTGTCCGGAGATTAA+TGG - chr4_2:57355481-57355500 Msa0609790:intron 40.0%
TTCCGTACAAATTGTCTCTG+AGG - chr4_2:57355507-57355526 Msa0609790:intron 40.0%
TCCGTACAAATTGTCTCTGA+GGG - chr4_2:57355508-57355527 Msa0609790:intron 40.0%
ACCCTCAGAGACAATTTGTA+CGG + chr4_2:57355512-57355531 None:intergenic 40.0%
! AATTGTCTCTGAGGGTTATG+AGG - chr4_2:57355516-57355535 Msa0609790:intron 40.0%
AAGGTGATGTTTCTCACCTT+GGG - chr4_2:57355575-57355594 Msa0609790:intron 40.0%
TTAAACACTCAACATCAGCC+TGG - chr4_2:57355636-57355655 Msa0609790:intron 40.0%
AAGAATACTCATGATCAGCC+TGG - chr4_2:57355671-57355690 Msa0609790:intron 40.0%
GTTCAAGGTTGAAGACATAG+TGG - chr4_2:57355739-57355758 Msa0609790:intron 40.0%
! GTACTCATTTGCTAGTTGAG+AGG - chr4_2:57355765-57355784 Msa0609790:intron 40.0%
! TCATTTGCTAGTTGAGAGGT+TGG - chr4_2:57355769-57355788 Msa0609790:intron 40.0%
GATTTCTTCATGAAGACGGA+AGG - chr4_2:57355878-57355897 Msa0609790:intron 40.0%
GCTATACATTCTTCAACCTC+CGG + chr4_2:57355908-57355927 None:intergenic 40.0%
! CCAATCACCCTTGGATTTTT+AGG + chr4_2:57355948-57355967 None:intergenic 40.0%
CCTAAAAATCCAAGGGTGAT+TGG - chr4_2:57355945-57355964 Msa0609790:intron 40.0%
TGTCTCGTATTGAAGAGGTA+TGG - chr4_2:57355998-57356017 Msa0609790:intron 40.0%
CCTTGTATCCAAACTACACT+AGG + chr4_2:57356051-57356070 None:intergenic 40.0%
CCTAGTGTAGTTTGGATACA+AGG - chr4_2:57356048-57356067 Msa0609790:intron 40.0%
!! TCACTGATTTGAAGTCAAGG+TGG - chr4_2:57356288-57356307 Msa0609790:intron 40.0%
ACGAAATTCTTCAACCATCG+TGG + chr4_2:57354114-57354133 None:intergenic 40.0%
GATGGTTGAAGAATTTCGTG+AGG - chr4_2:57354115-57354134 Msa0609790:intron 40.0%
AGATAGAAGGGCTGAAACAA+GGG - chr4_2:57354297-57354316 Msa0609790:intron 40.0%
GCTGAAACAAGGGTTTAGAA+AGG - chr4_2:57354307-57354326 Msa0609790:intron 40.0%
TGTCTCTTGGCAACAAAACT+AGG - chr4_2:57354360-57354379 Msa0609790:intron 40.0%
! GGCAACAAAACTAGGTTTTG+TGG - chr4_2:57354368-57354387 Msa0609790:intron 40.0%
!!! TTTTGTGGGTTGATTCACCT+TGG - chr4_2:57354383-57354402 Msa0609790:intron 40.0%
!! TTTGTGGGTTGATTCACCTT+GGG - chr4_2:57354384-57354403 Msa0609790:intron 40.0%
TCACCTTGGGAAACACTATT+AGG - chr4_2:57354397-57354416 Msa0609790:intron 40.0%
AGGATTGAGTCTCTTGGTTA+CGG - chr4_2:57354417-57354436 Msa0609790:intron 40.0%
TGAGTAGCGTTACAAAGAGA+TGG + chr4_2:57354493-57354512 None:intergenic 40.0%
! TCATCATATAGTGGAACGGA+GGG - chr4_2:57354510-57354529 Msa0609790:intron 40.0%
!! CAGAATTTGTTGACCCAGTT+CGG + chr4_2:57356837-57356856 None:intergenic 40.0%
CGGTGTTCATGTCAAAACTT+TGG + chr4_2:57357071-57357090 None:intergenic 40.0%
GATGAATCAAGTGTGTGGTT+AGG + chr4_2:57357123-57357142 None:intergenic 40.0%
AATACTGACCTTGCAAGTGT+GGG - chr4_2:57357251-57357270 Msa0609790:intron 40.0%
TGAACATGTTGTATGTAGCG+AGG + chr4_2:57357319-57357338 None:intergenic 40.0%
CTAATCAGGAGCTTAAGGAA+TGG + chr4_2:57357468-57357487 None:intergenic 40.0%
CATTCCTTAAGCTCCTGATT+AGG - chr4_2:57357466-57357485 Msa0609790:intron 40.0%
GGATTGAAGAGTGAAGACTA+AGG + chr4_2:57357635-57357654 None:intergenic 40.0%
! CTTTGGCTGCTTTATAACGA+TGG + chr4_2:57357656-57357675 None:intergenic 40.0%
CACATTGATGTATGCCTACT+TGG + chr4_2:57357723-57357742 None:intergenic 40.0%
GATACCATTGTTGAGTCATG+AGG - chr4_2:57357800-57357819 Msa0609790:intron 40.0%
TACCATTGTTGAGTCATGAG+GGG - chr4_2:57357802-57357821 Msa0609790:intron 40.0%
TGGTCCAAGTTTGATCGATT+CGG + chr4_2:57358061-57358080 None:intergenic 40.0%
GCATGGAGGAAATAAACGAG+TGG - chr4_2:57352181-57352200 Msa0609790:three_prime_UTR 45.0%
!! TTCTTCATGATGGGTAGGAG+TGG + chr4_2:57352328-57352347 None:intergenic 45.0%
ACTCCTACCCATCATGAAGA+AGG - chr4_2:57352327-57352346 Msa0609790:exon 45.0%
! TAAGATGTTGAAGGTGCGGA+TGG - chr4_2:57352449-57352468 Msa0609790:intron 45.0%
AATTGTGAGGGTGGCTTCTA+AGG - chr4_2:57352488-57352507 Msa0609790:intron 45.0%
CGTAACTATGCAATGTGTGC+GGG - chr4_2:57352513-57352532 Msa0609790:intron 45.0%
GTAACTATGCAATGTGTGCG+GGG - chr4_2:57352514-57352533 Msa0609790:intron 45.0%
TAACTATGCAATGTGTGCGG+GGG - chr4_2:57352515-57352534 Msa0609790:intron 45.0%
!! GTTTTGGTCAATTACGTGCG+TGG - chr4_2:57352539-57352558 Msa0609790:intron 45.0%
TGGTTTACGTCGGGATTCAA+AGG - chr4_2:57352589-57352608 Msa0609790:intron 45.0%
TGAGGTGAGTATATGGCATC+CGG - chr4_2:57352659-57352678 Msa0609790:intron 45.0%
! AGATGTCCTAAGTATCGTCG+CGG - chr4_2:57352741-57352760 Msa0609790:intron 45.0%
ATGTTAACACAATCCGCTGG+TGG - chr4_2:57352887-57352906 Msa0609790:intron 45.0%
TGGATGATCTAGGCTGTGTT+TGG - chr4_2:57352907-57352926 Msa0609790:intron 45.0%
CATGACAACATGGGTAAACG+TGG + chr4_2:57353176-57353195 None:intergenic 45.0%
CATGAGGATGCATGACAACA+TGG + chr4_2:57353186-57353205 None:intergenic 45.0%
CTCGGCTATTGCAGTATCTT+TGG + chr4_2:57354020-57354039 None:intergenic 45.0%
AATTTCGTGAGGCAAGTCAC+TGG - chr4_2:57354126-57354145 Msa0609790:intron 45.0%
! TGGATTTTTCGTGCCACGAT+GGG - chr4_2:57354146-57354165 Msa0609790:intron 45.0%
GAGATAGAAGGGCTGAAACA+AGG - chr4_2:57354296-57354315 Msa0609790:intron 45.0%
GGATTGAGTCTCTTGGTTAC+GGG - chr4_2:57354418-57354437 Msa0609790:intron 45.0%
GCTGGGATTTGGGTAGAATT+AGG - chr4_2:57354446-57354465 Msa0609790:intron 45.0%
GGGATTTGGGTAGAATTAGG+CGG - chr4_2:57354449-57354468 Msa0609790:intron 45.0%
GGATTTGGGTAGAATTAGGC+GGG - chr4_2:57354450-57354469 Msa0609790:intron 45.0%
! CTCATCATATAGTGGAACGG+AGG - chr4_2:57354509-57354528 Msa0609790:intron 45.0%
TCCAAATTGACCTAGTCTGG+GGG + chr4_2:57354545-57354564 None:intergenic 45.0%
GTCCAAATTGACCTAGTCTG+GGG + chr4_2:57354546-57354565 None:intergenic 45.0%
GGTCCAAATTGACCTAGTCT+GGG + chr4_2:57354547-57354566 None:intergenic 45.0%
TAGGTCAATTTGGACCGAAC+TGG - chr4_2:57354551-57354570 Msa0609790:intron 45.0%
AGGTCAATTTGGACCGAACT+GGG - chr4_2:57354552-57354571 Msa0609790:intron 45.0%
CAACTTGATGTGTGGAGCAA+GGG + chr4_2:57354684-57354703 None:intergenic 45.0%
ACAACTTGATGTGTGGAGCA+AGG + chr4_2:57354685-57354704 None:intergenic 45.0%
AAGTACCATGGGTTCGAAGT+GGG - chr4_2:57354776-57354795 Msa0609790:intron 45.0%
AATATCCCACTTCGAACCCA+TGG + chr4_2:57354784-57354803 None:intergenic 45.0%
!! GAGAAAGCTTTGAAGGGTGA+AGG - chr4_2:57354879-57354898 Msa0609790:intron 45.0%
! GCCTTCTTTTCCATAGAGCA+TGG + chr4_2:57355267-57355286 None:intergenic 45.0%
AGCTGCTTGAACTTCTTCCA+AGG + chr4_2:57355297-57355316 None:intergenic 45.0%
!! TCAAGCAGCTTTGAGAACCA+AGG - chr4_2:57355307-57355326 Msa0609790:intron 45.0%
CTTCGACTTAGTCAACTCCT+TGG + chr4_2:57355327-57355346 None:intergenic 45.0%
CAAGGAGTTGACTAAGTCGA+AGG - chr4_2:57355325-57355344 Msa0609790:intron 45.0%
!! AGAGTTGATGAAAACGGGGA+AGG - chr4_2:57355353-57355372 Msa0609790:intron 45.0%
GAAGGCCTAAGTGTTTCAAG+AGG - chr4_2:57355371-57355390 Msa0609790:intron 45.0%
AGTGTTTCAAGAGGGAATGG+TGG - chr4_2:57355380-57355399 Msa0609790:intron 45.0%
CAAGATGGGTCACTTCAAGA+AGG - chr4_2:57355462-57355481 Msa0609790:intron 45.0%
!! TGCTTTGATGGTGTGCTGTT+TGG - chr4_2:57355546-57355565 Msa0609790:intron 45.0%
!! TTTGATGGTGTGCTGTTTGG+AGG - chr4_2:57355549-57355568 Msa0609790:intron 45.0%
GAAGGTGATGTTTCTCACCT+TGG - chr4_2:57355574-57355593 Msa0609790:intron 45.0%
AGGTGATGTTTCTCACCTTG+GGG - chr4_2:57355576-57355595 Msa0609790:intron 45.0%
! TACTCATGATCTACCGGTTG+AGG - chr4_2:57355711-57355730 Msa0609790:intron 45.0%
TTAGGTGGAGTTGAACACAC+CGG - chr4_2:57355802-57355821 Msa0609790:intron 45.0%
TATGCTCTAGTGGTGAGCAA+GGG - chr4_2:57355856-57355875 Msa0609790:intron 45.0%
AGAATGTATAGCACGGCTTG+TGG - chr4_2:57355916-57355935 Msa0609790:intron 45.0%
TGGATGCAAGGTGATCTTCA+AGG - chr4_2:57355965-57355984 Msa0609790:intron 45.0%
CAAGGTGATCTTCAAGGAAG+CGG - chr4_2:57355971-57355990 Msa0609790:intron 45.0%
AAGGTGATCTTCAAGGAAGC+GGG - chr4_2:57355972-57355991 Msa0609790:intron 45.0%
GGAGATGTCTCGTATTGAAG+AGG - chr4_2:57355993-57356012 Msa0609790:intron 45.0%
GGATACAAGGATCTTCGAGA+AGG - chr4_2:57356061-57356080 Msa0609790:intron 45.0%
TACAAGGATCTTCGAGAAGG+CGG - chr4_2:57356064-57356083 Msa0609790:intron 45.0%
ACCTTAACCTCTTCAGCCAT+CGG + chr4_2:57356098-57356117 None:intergenic 45.0%
GAGGTTAAGGTGTGTACTTG+TGG - chr4_2:57356107-57356126 Msa0609790:intron 45.0%
GGACACAAGGATCTTCAAAG+GGG - chr4_2:57356157-57356176 Msa0609790:intron 45.0%
!! TACTTGGTGTAGTGGGAACA+AGG - chr4_2:57356229-57356248 Msa0609790:intron 45.0%
!! ACTTGGTGTAGTGGGAACAA+GGG - chr4_2:57356230-57356249 Msa0609790:intron 45.0%
AACAAGGGAAAGAGCAGCAA+TGG - chr4_2:57356245-57356264 Msa0609790:intron 45.0%
!! AGCAATGGTGGTTGATGGTT+TGG - chr4_2:57356260-57356279 Msa0609790:intron 45.0%
AATTTCGTGAGGCAAGTCAC+TGG - chr4_2:57354126-57354145 Msa0609790:intron 45.0%
! TGGATTTTTCGTGCCACGAT+GGG - chr4_2:57354146-57354165 Msa0609790:intron 45.0%
GAGATAGAAGGGCTGAAACA+AGG - chr4_2:57354296-57354315 Msa0609790:intron 45.0%
GGATTGAGTCTCTTGGTTAC+GGG - chr4_2:57354418-57354437 Msa0609790:intron 45.0%
GCTGGGATTTGGGTAGAATT+AGG - chr4_2:57354446-57354465 Msa0609790:intron 45.0%
GGGATTTGGGTAGAATTAGG+CGG - chr4_2:57354449-57354468 Msa0609790:intron 45.0%
GGATTTGGGTAGAATTAGGC+GGG - chr4_2:57354450-57354469 Msa0609790:intron 45.0%
! CTCATCATATAGTGGAACGG+AGG - chr4_2:57354509-57354528 Msa0609790:intron 45.0%
TCCAAATTGACCTAGTCTGG+GGG + chr4_2:57354545-57354564 None:intergenic 45.0%
GTCCAAATTGACCTAGTCTG+GGG + chr4_2:57354546-57354565 None:intergenic 45.0%
GGTCCAAATTGACCTAGTCT+GGG + chr4_2:57354547-57354566 None:intergenic 45.0%
TAGGTCAATTTGGACCGAAC+TGG - chr4_2:57354551-57354570 Msa0609790:intron 45.0%
AGGTCAATTTGGACCGAACT+GGG - chr4_2:57354552-57354571 Msa0609790:intron 45.0%
CAACTTGATGTGTGGAGCAA+GGG + chr4_2:57354684-57354703 None:intergenic 45.0%
ACAACTTGATGTGTGGAGCA+AGG + chr4_2:57354685-57354704 None:intergenic 45.0%
CTTGAACTTGCATGGGACAA+AGG + chr4_2:57357033-57357052 None:intergenic 45.0%
CTCTGCTCTTGAACTTGCAT+GGG + chr4_2:57357040-57357059 None:intergenic 45.0%
ACTCTGCTCTTGAACTTGCA+TGG + chr4_2:57357041-57357060 None:intergenic 45.0%
GAATCAAGTGTGTGGTTAGG+TGG + chr4_2:57357120-57357139 None:intergenic 45.0%
CTAGTAATCACAAGGCTGCA+TGG + chr4_2:57357159-57357178 None:intergenic 45.0%
!! GAGTGGAAAGTACCGTATAG+AGG + chr4_2:57357217-57357236 None:intergenic 45.0%
GAATACTGACCTTGCAAGTG+TGG - chr4_2:57357250-57357269 Msa0609790:intron 45.0%
GCAAAATTCCCACACTTGCA+AGG + chr4_2:57357262-57357281 None:intergenic 45.0%
!! TAGCGAGGCAGTCTTATTGA+TGG + chr4_2:57357304-57357323 None:intergenic 45.0%
TCAGGAGCTTAAGGAATGGT+TGG + chr4_2:57357464-57357483 None:intergenic 45.0%
TCAGCCTAATCAGGAGCTTA+AGG + chr4_2:57357473-57357492 None:intergenic 45.0%
TCGACATGAGAAGAACGCAA+AGG - chr4_2:57357568-57357587 Msa0609790:intron 45.0%
CATGAGAAGAACGCAAAGGT+CGG - chr4_2:57357572-57357591 Msa0609790:intron 45.0%
TTCACACGTGACTACGTGAA+GGG + chr4_2:57357985-57358004 None:intergenic 45.0%
AACCTTGCGACGTGATGATA+AGG + chr4_2:57358330-57358349 None:intergenic 45.0%
GTTCAGGTGCATCGAATTAG+TGG - chr4_2:57358347-57358366 Msa0609790:CDS 45.0%
!!! ATTTATTTAGATTTTAATTA+CGG + chr4_2:57358486-57358505 None:intergenic 5.0%
AGGAATTTCCTCGCCCATGA+CGG - chr4_2:57352347-57352366 Msa0609790:CDS 50.0%
GAGAGTGGAAATTGTGAGGG+TGG - chr4_2:57352479-57352498 Msa0609790:intron 50.0%
TCGATAAAAGGGACGCCGTT+AGG - chr4_2:57352803-57352822 Msa0609790:intron 50.0%
! AATCCGCTGGTGGATGATCT+AGG - chr4_2:57352897-57352916 Msa0609790:intron 50.0%
! CTGGATTTTTCGTGCCACGA+TGG - chr4_2:57354145-57354164 Msa0609790:intron 50.0%
! GGATTTTTCGTGCCACGATG+GGG - chr4_2:57354147-57354166 Msa0609790:intron 50.0%
AGTCTCTTGGTTACGGGAAG+AGG - chr4_2:57354424-57354443 Msa0609790:intron 50.0%
TCCCCCAGACTAGGTCAATT+TGG - chr4_2:57354541-57354560 Msa0609790:intron 50.0%
CGGTCCAAATTGACCTAGTC+TGG + chr4_2:57354548-57354567 None:intergenic 50.0%
CAAGTACCATGGGTTCGAAG+TGG - chr4_2:57354775-57354794 Msa0609790:intron 50.0%
GAAGGGTGAAGGTTCGTTAC+CGG - chr4_2:57354890-57354909 Msa0609790:intron 50.0%
! AGTGCCATTGTCTTGTGCCT+CGG - chr4_2:57354960-57354979 Msa0609790:intron 50.0%
CTCTCAAGACTTTATCCCCG+AGG + chr4_2:57354980-57354999 None:intergenic 50.0%
AGTAGCAAAGGAACCAACCG+CGG - chr4_2:57355001-57355020 Msa0609790:intron 50.0%
GGCCATCATGGAGCAACTTA+CGG - chr4_2:57355127-57355146 Msa0609790:intron 50.0%
CTCCGTAAGTTGCTCCATGA+TGG + chr4_2:57355132-57355151 None:intergenic 50.0%
GTTTCAAGAGGGAATGGTGG+AGG - chr4_2:57355383-57355402 Msa0609790:intron 50.0%
! ATGGTGGAGGTAGAGGTAAC+CGG - chr4_2:57355396-57355415 Msa0609790:intron 50.0%
TCTGAGGGTTATGAGGATGC+AGG - chr4_2:57355523-57355542 Msa0609790:intron 50.0%
TGAGGATGCAGGTGCTTTGA+TGG - chr4_2:57355534-57355553 Msa0609790:intron 50.0%
!! GTGTGCTGTTTGGAGGATGA+AGG - chr4_2:57355556-57355575 Msa0609790:intron 50.0%
GGTGATGTTTCTCACCTTGG+GGG - chr4_2:57355577-57355596 Msa0609790:intron 50.0%
TACTCATGATCAGCCTGGAG+AGG - chr4_2:57355676-57355695 Msa0609790:intron 50.0%
! TCATGATCTACCGGTTGAGG+TGG - chr4_2:57355714-57355733 Msa0609790:intron 50.0%
GAGGTTGGAAGCTCAGCTTT+AGG - chr4_2:57355784-57355803 Msa0609790:intron 50.0%
!! GTTGGAAGCTCAGCTTTAGG+TGG - chr4_2:57355787-57355806 Msa0609790:intron 50.0%
TAGGTGGAGTTGAACACACC+GGG - chr4_2:57355803-57355822 Msa0609790:intron 50.0%
GTACGACTATGGAGGACCTT+GGG - chr4_2:57355830-57355849 Msa0609790:intron 50.0%
CTATGCTCTAGTGGTGAGCA+AGG - chr4_2:57355855-57355874 Msa0609790:intron 50.0%
!! CATGAAGACGGAAGGCATTC+CGG - chr4_2:57355886-57355905 Msa0609790:intron 50.0%
TCCAAGGGTGATTGGATGCA+AGG - chr4_2:57355953-57355972 Msa0609790:intron 50.0%
ACCTTGCATCCAATCACCCT+TGG + chr4_2:57355957-57355976 None:intergenic 50.0%
AGACATTCCGATGGCTGAAG+AGG - chr4_2:57356088-57356107 Msa0609790:intron 50.0%
TCCGATGGCTGAAGAGGTTA+AGG - chr4_2:57356094-57356113 Msa0609790:intron 50.0%
CACAAGGATCTTCAAAGGGG+CGG - chr4_2:57356160-57356179 Msa0609790:intron 50.0%
!! TGTGGAGCTACTTGGTGTAG+TGG - chr4_2:57356221-57356240 Msa0609790:intron 50.0%
!! GTGGAGCTACTTGGTGTAGT+GGG - chr4_2:57356222-57356241 Msa0609790:intron 50.0%
AAGGGAAAGAGCAGCAATGG+TGG - chr4_2:57356248-57356267 Msa0609790:intron 50.0%
AGAGCAGCAATGGTGGTTGA+TGG - chr4_2:57356255-57356274 Msa0609790:intron 50.0%
! CTGGATTTTTCGTGCCACGA+TGG - chr4_2:57354145-57354164 Msa0609790:intron 50.0%
! GGATTTTTCGTGCCACGATG+GGG - chr4_2:57354147-57354166 Msa0609790:intron 50.0%
AGTCTCTTGGTTACGGGAAG+AGG - chr4_2:57354424-57354443 Msa0609790:intron 50.0%
TCCCCCAGACTAGGTCAATT+TGG - chr4_2:57354541-57354560 Msa0609790:intron 50.0%
CGGTCCAAATTGACCTAGTC+TGG + chr4_2:57354548-57354567 None:intergenic 50.0%
!! GGTGGCTTTGGCCGAAATTT+GGG + chr4_2:57357102-57357121 None:intergenic 50.0%
!! AGGTGGCTTTGGCCGAAATT+TGG + chr4_2:57357103-57357122 None:intergenic 50.0%
AGTGTGTGGTTAGGTGGCTT+TGG + chr4_2:57357114-57357133 None:intergenic 50.0%
!! CGAGGCAGTCTTATTGATGG+AGG + chr4_2:57357301-57357320 None:intergenic 50.0%
AGAATCTCTAGACCTGCGAG+TGG + chr4_2:57357438-57357457 None:intergenic 50.0%
CTCCCCTCATGACTCAACAA+TGG + chr4_2:57357807-57357826 None:intergenic 50.0%
!! GTCCAACCTGATGGATTCAC+CGG + chr4_2:57357831-57357850 None:intergenic 50.0%
TTGCTCTTGGTCCAACCTGA+TGG + chr4_2:57357840-57357859 None:intergenic 50.0%
CTCACTTGAGTGCTTGCTCT+TGG + chr4_2:57357853-57357872 None:intergenic 50.0%
TCACACGTGACTACGTGAAG+GGG + chr4_2:57357984-57358003 None:intergenic 50.0%
CTTCACACGTGACTACGTGA+AGG + chr4_2:57357986-57358005 None:intergenic 50.0%
TGCGCCGAATCGATCAAACT+TGG - chr4_2:57358054-57358073 Msa0609790:CDS 50.0%
! AGCCTTATCATCACGTCGCA+AGG - chr4_2:57358325-57358344 Msa0609790:CDS 50.0%
ATCATCACGTCGCAAGGTTC+AGG - chr4_2:57358331-57358350 Msa0609790:CDS 50.0%
CACACCACTCTCGAATCCTC+TGG - chr4_2:57352219-57352238 Msa0609790:three_prime_UTR 55.0%
CCATCCAGAGGATTCGAGAG+TGG + chr4_2:57352226-57352245 None:intergenic 55.0%
CCACTCTCGAATCCTCTGGA+TGG - chr4_2:57352223-57352242 Msa0609790:three_prime_UTR 55.0%
ACGGAACTTGACGCCGTCAT+GGG + chr4_2:57352363-57352382 None:intergenic 55.0%
AACGGAACTTGACGCCGTCA+TGG + chr4_2:57352364-57352383 None:intergenic 55.0%
ATGACGGCGTCAAGTTCCGT+TGG - chr4_2:57352363-57352382 Msa0609790:CDS 55.0%
TTCACCTTCCTCGCCACCAA+CGG + chr4_2:57352382-57352401 None:intergenic 55.0%
! GATGTTGAAGGTGCGGATGG+AGG - chr4_2:57352452-57352471 Msa0609790:intron 55.0%
TGGTCAATTACGTGCGTGGC+TGG - chr4_2:57352543-57352562 Msa0609790:intron 55.0%
!! ACGGCGGTGTTGGTTTACGT+CGG - chr4_2:57352579-57352598 Msa0609790:intron 55.0%
ATTCCGAACCGTCCACCTTC+CGG + chr4_2:57352620-57352639 None:intergenic 55.0%
! CTAAGTATCGTCGCGGCGTA+GGG - chr4_2:57352748-57352767 Msa0609790:intron 55.0%
! TAAGTATCGTCGCGGCGTAG+GGG - chr4_2:57352749-57352768 Msa0609790:intron 55.0%
CAGCCTAGATCATCCACCAG+CGG + chr4_2:57352903-57352922 None:intergenic 55.0%
TGTCATGCATCCTCATGCCC+TGG - chr4_2:57353189-57353208 Msa0609790:intron 55.0%
TCCTCATGCCCTGGACAAAG+AGG - chr4_2:57353198-57353217 Msa0609790:intron 55.0%
TCCTCTTTGTCCAGGGCATG+AGG + chr4_2:57353202-57353221 None:intergenic 55.0%
!! CAGGTAGCTGACTGACTTGC+GGG + chr4_2:57353884-57353903 None:intergenic 55.0%
!! CCAGGTAGCTGACTGACTTG+CGG + chr4_2:57353885-57353904 None:intergenic 55.0%
TCTTGGTTACGGGAAGAGGC+TGG - chr4_2:57354428-57354447 Msa0609790:intron 55.0%
CTTGGTTACGGGAAGAGGCT+GGG - chr4_2:57354429-57354448 Msa0609790:intron 55.0%
TACGGGAAGAGGCTGGGATT+TGG - chr4_2:57354435-57354454 Msa0609790:intron 55.0%
ACGGGAAGAGGCTGGGATTT+GGG - chr4_2:57354436-57354455 Msa0609790:intron 55.0%
ATCCTTTGACCCTTGCCCCA+CGG + chr4_2:57354752-57354771 None:intergenic 55.0%
!! GAAGACCGAGATGGTGGACA+AGG - chr4_2:57354932-57354951 Msa0609790:intron 55.0%
GCACAAGACAATGGCACTCC+TGG + chr4_2:57354958-57354977 None:intergenic 55.0%
! GTGCCATTGTCTTGTGCCTC+GGG - chr4_2:57354961-57354980 Msa0609790:intron 55.0%
TGCCATTGTCTTGTGCCTCG+GGG - chr4_2:57354962-57354981 Msa0609790:intron 55.0%
ATCCCCGAGGCACAAGACAA+TGG + chr4_2:57354967-57354986 None:intergenic 55.0%
!! GGCATCGATGTGGGCAAAGT+TGG - chr4_2:57355022-57355041 Msa0609790:intron 55.0%
GGTGGAGTCAAAGGCCATCA+TGG - chr4_2:57355115-57355134 Msa0609790:intron 55.0%
! AGAGGGAATGGTGGAGGTAG+AGG - chr4_2:57355389-57355408 Msa0609790:intron 55.0%
TGGTGGAGGTAGAGGTAACC+GGG - chr4_2:57355397-57355416 Msa0609790:intron 55.0%
CACTCAACATCAGCCTGGAG+AGG - chr4_2:57355641-57355660 Msa0609790:intron 55.0%
TCAACATCAGCCTGGAGAGG+CGG - chr4_2:57355644-57355663 Msa0609790:intron 55.0%
ATTCTTACCACCGCCTCTCC+AGG + chr4_2:57355657-57355676 None:intergenic 55.0%
TCATGATCAGCCTGGAGAGG+CGG - chr4_2:57355679-57355698 Msa0609790:intron 55.0%
ATTCTTACCACCGCCTCTCC+AGG + chr4_2:57355657-57355676 None:intergenic 55.0%
! TGATCTACCGGTTGAGGTGG+AGG - chr4_2:57355717-57355736 Msa0609790:intron 55.0%
CCTTGAACCTCCACCTCAAC+CGG + chr4_2:57355727-57355746 None:intergenic 55.0%
CTCCATAGTCGTACCACTCC+CGG + chr4_2:57355824-57355843 None:intergenic 55.0%
GGTACGACTATGGAGGACCT+TGG - chr4_2:57355829-57355848 Msa0609790:intron 55.0%
CCACTAGAGCATAGCACCCA+AGG + chr4_2:57355849-57355868 None:intergenic 55.0%
! CCTTGGGTGCTATGCTCTAG+TGG - chr4_2:57355846-57355865 Msa0609790:intron 55.0%
GAAGGCGGAAGACATTCCGA+TGG - chr4_2:57356079-57356098 Msa0609790:intron 55.0%
AGGATCTTCAAAGGGGCGGA+AGG - chr4_2:57356164-57356183 Msa0609790:intron 55.0%
TCTTGGTTACGGGAAGAGGC+TGG - chr4_2:57354428-57354447 Msa0609790:intron 55.0%
CTTGGTTACGGGAAGAGGCT+GGG - chr4_2:57354429-57354448 Msa0609790:intron 55.0%
TACGGGAAGAGGCTGGGATT+TGG - chr4_2:57354435-57354454 Msa0609790:intron 55.0%
ACGGGAAGAGGCTGGGATTT+GGG - chr4_2:57354436-57354455 Msa0609790:intron 55.0%
GTTGAGTCATGAGGGGAGTC+CGG - chr4_2:57357809-57357828 Msa0609790:intron 55.0%
GTCCGGTGAATCCATCAGGT+TGG - chr4_2:57357826-57357845 Msa0609790:intron 55.0%
!! GGGGACTAGCCATTCTCACT+TGG + chr4_2:57357964-57357983 None:intergenic 55.0%
CACACGTGACTACGTGAAGG+GGG + chr4_2:57357983-57358002 None:intergenic 55.0%
ACGGCGTCAAGTTCCGTTGG+TGG - chr4_2:57352366-57352385 Msa0609790:CDS 60.0%
!! GTCAAGTTCCGTTGGTGGCG+AGG - chr4_2:57352371-57352390 Msa0609790:CDS 60.0%
!! AGTTCCGTTGGTGGCGAGGA+AGG - chr4_2:57352375-57352394 Msa0609790:CDS 60.0%
GGCTGCAACGCGGTTGGATT+GGG - chr4_2:57352413-57352432 Msa0609790:intron 60.0%
GCGGATGGAGGCTATGAGAG+TGG - chr4_2:57352464-57352483 Msa0609790:intron 60.0%
!!! CAATGTGTGCGGGGGCGTTT+TGG - chr4_2:57352523-57352542 Msa0609790:intron 60.0%
GGCTGGAGCTGTAGCTGTGA+CGG - chr4_2:57352560-57352579 Msa0609790:intron 60.0%
TGGAGCTGTAGCTGTGACGG+CGG - chr4_2:57352563-57352582 Msa0609790:intron 60.0%
TGTAGCTGTGACGGCGGTGT+TGG - chr4_2:57352569-57352588 Msa0609790:intron 60.0%
!! CGGCGGTGTTGGTTTACGTC+GGG - chr4_2:57352580-57352599 Msa0609790:intron 60.0%
!! TCGGGATTCAAAGGCGTCGC+CGG - chr4_2:57352598-57352617 Msa0609790:intron 60.0%
!! GATTCAAAGGCGTCGCCGGA+AGG - chr4_2:57352602-57352621 Msa0609790:intron 60.0%
CCTACGCCGCGACGATACTT+AGG + chr4_2:57352750-57352769 None:intergenic 60.0%
! CCTAAGTATCGTCGCGGCGT+AGG - chr4_2:57352747-57352766 Msa0609790:intron 60.0%
CCGCAAGTCAGTCAGCTACC+TGG - chr4_2:57353882-57353901 Msa0609790:intron 60.0%
GCAGAAGCAACGTGCCACGA+TGG - chr4_2:57354076-57354095 Msa0609790:intron 60.0%
GGCACGTTGCTTCTCCATCG+TGG + chr4_2:57354093-57354112 None:intergenic 60.0%
GGAGAAGCAACGTGCCACGA+TGG - chr4_2:57354097-57354116 Msa0609790:intron 60.0%
AACGTGGCACGATGGTGTGC+TGG - chr4_2:57354174-57354193 Msa0609790:intron 60.0%
ACGGTGGGCGCCAATTGTTG+AGG + chr4_2:57354733-57354752 None:intergenic 60.0%
TCAACAATTGGCGCCCACCG+TGG - chr4_2:57354732-57354751 Msa0609790:intron 60.0%
CAACAATTGGCGCCCACCGT+GGG - chr4_2:57354733-57354752 Msa0609790:intron 60.0%
AACAATTGGCGCCCACCGTG+GGG - chr4_2:57354734-57354753 Msa0609790:intron 60.0%
TTTGACCCTTGCCCCACGGT+GGG + chr4_2:57354748-57354767 None:intergenic 60.0%
ACCGGTCACCATGACACGAG+CGG - chr4_2:57354908-57354927 Msa0609790:intron 60.0%
TCCGCTCGTGTCATGGTGAC+CGG + chr4_2:57354912-57354931 None:intergenic 60.0%
GGTCTTCTCCGCTCGTGTCA+TGG + chr4_2:57354919-57354938 None:intergenic 60.0%
ACGAGCGGAGAAGACCGAGA+TGG - chr4_2:57354923-57354942 Msa0609790:intron 60.0%
AGCGGAGAAGACCGAGATGG+TGG - chr4_2:57354926-57354945 Msa0609790:intron 60.0%
!! CCTGGCCTTGTCCACCATCT+CGG + chr4_2:57354940-57354959 None:intergenic 60.0%
!! AACCAACCGCGGCATCGATG+TGG - chr4_2:57355012-57355031 Msa0609790:intron 60.0%
!! ACCAACCGCGGCATCGATGT+GGG - chr4_2:57355013-57355032 Msa0609790:intron 60.0%
CTTTGCCCACATCGATGCCG+CGG + chr4_2:57355021-57355040 None:intergenic 60.0%
GGTGGAGGTAGAGGTAACCG+GGG - chr4_2:57355398-57355417 Msa0609790:intron 60.0%
TCTACCAGGCATCACCCCCA+AGG + chr4_2:57355594-57355613 None:intergenic 60.0%
GTGATGCCTGGTAGAGCGGT+GGG - chr4_2:57355599-57355618 Msa0609790:intron 60.0%
CCGGTTGAGGTGGAGGTTCA+AGG - chr4_2:57355724-57355743 Msa0609790:intron 60.0%
GGAGTTGAACACACCGGGAG+TGG - chr4_2:57355808-57355827 Msa0609790:intron 60.0%
CACCGGGAGTGGTACGACTA+TGG - chr4_2:57355819-57355838 Msa0609790:intron 60.0%
CGGGAGTGGTACGACTATGG+AGG - chr4_2:57355822-57355841 Msa0609790:intron 60.0%
!! GAAGACGGAAGGCATTCCGG+AGG - chr4_2:57355889-57355908 Msa0609790:intron 60.0%
GCAGAAGCAACGTGCCACGA+TGG - chr4_2:57354076-57354095 Msa0609790:intron 60.0%
GGCACGTTGCTTCTCCATCG+TGG + chr4_2:57354093-57354112 None:intergenic 60.0%
GGAGAAGCAACGTGCCACGA+TGG - chr4_2:57354097-57354116 Msa0609790:intron 60.0%
AACGTGGCACGATGGTGTGC+TGG - chr4_2:57354174-57354193 Msa0609790:intron 60.0%
TCAGTACCTGCTCCACTCGC+AGG - chr4_2:57357423-57357442 Msa0609790:intron 60.0%
TCTAGACCTGCGAGTGGAGC+AGG + chr4_2:57357432-57357451 None:intergenic 60.0%
GGGAGTCCGGTGAATCCATC+AGG - chr4_2:57357822-57357841 Msa0609790:intron 60.0%
ACTTGACGCCGTCATGGGCG+AGG + chr4_2:57352358-57352377 None:intergenic 65.0%
AGGAAGGTGAAGCCCCGACG+CGG - chr4_2:57352391-57352410 Msa0609790:CDS 65.0%
GGGCTGCAACGCGGTTGGAT+TGG - chr4_2:57352412-57352431 Msa0609790:intron 65.0%
!! TCAAAGGCGTCGCCGGAAGG+TGG - chr4_2:57352605-57352624 Msa0609790:intron 65.0%
TCGCCGGAAGGTGGACGGTT+CGG - chr4_2:57352614-57352633 Msa0609790:intron 65.0%
GCTGCTCTCTCCCCCAGACT+AGG - chr4_2:57354532-57354551 Msa0609790:intron 65.0%
CTTTGACCCTTGCCCCACGG+TGG + chr4_2:57354749-57354768 None:intergenic 65.0%
CACCGTGGGGCAAGGGTCAA+AGG - chr4_2:57354747-57354766 Msa0609790:intron 65.0%
!! CCGAGATGGTGGACAAGGCC+AGG - chr4_2:57354937-57354956 Msa0609790:intron 65.0%
CTCACCTTGGGGGTGATGCC+TGG - chr4_2:57355587-57355606 Msa0609790:intron 65.0%
GGGGGTGATGCCTGGTAGAG+CGG - chr4_2:57355595-57355614 Msa0609790:intron 65.0%
GGTGATGCCTGGTAGAGCGG+TGG - chr4_2:57355598-57355617 Msa0609790:intron 65.0%
ACATCAGCCTGGAGAGGCGG+TGG - chr4_2:57355647-57355666 Msa0609790:intron 65.0%
TGATCAGCCTGGAGAGGCGG+TGG - chr4_2:57355682-57355701 Msa0609790:intron 65.0%
GCTGCTCTCTCCCCCAGACT+AGG - chr4_2:57354532-57354551 Msa0609790:intron 65.0%
GGAAGGTGAAGCCCCGACGC+GGG - chr4_2:57352392-57352411 Msa0609790:CDS 70.0%
AACCGCGTTGCAGCCCGCGT+CGG + chr4_2:57352408-57352427 None:intergenic 70.0%
! AGGCGTCGCCGGAAGGTGGA+CGG - chr4_2:57352609-57352628 Msa0609790:intron 70.0%
TCGTCGCGGCGTAGGGGCTT+TGG - chr4_2:57352755-57352774 Msa0609790:intron 70.0%
CGTCGCGGCGTAGGGGCTTT+GGG - chr4_2:57352756-57352775 Msa0609790:intron 70.0%
GCCACGATGGGGTCGCAACG+TGG - chr4_2:57354158-57354177 Msa0609790:intron 70.0%
GCCACGTTGCGACCCCATCG+TGG + chr4_2:57354162-57354181 None:intergenic 70.0%
GGGGTCGCAACGTGGCACGA+TGG - chr4_2:57354166-57354185 Msa0609790:intron 70.0%
GCCCACATCGATGCCGCGGT+TGG + chr4_2:57355017-57355036 None:intergenic 70.0%
CAGACGCCCACCGCTCTACC+AGG + chr4_2:57355608-57355627 None:intergenic 70.0%
CTGGTAGAGCGGTGGGCGTC+TGG - chr4_2:57355606-57355625 Msa0609790:intron 70.0%
GCCACGATGGGGTCGCAACG+TGG - chr4_2:57354158-57354177 Msa0609790:intron 70.0%
GCCACGTTGCGACCCCATCG+TGG + chr4_2:57354162-57354181 None:intergenic 70.0%
GGGGTCGCAACGTGGCACGA+TGG - chr4_2:57354166-57354185 Msa0609790:intron 70.0%
ACCGCGTTGCAGCCCGCGTC+GGG + chr4_2:57352407-57352426 None:intergenic 75.0%
! GACGCGGGCTGCAACGCGGT+TGG - chr4_2:57352407-57352426 Msa0609790:intron 75.0%
TTGGCGCCCACCGTGGGGCA+AGG - chr4_2:57354739-57354758 Msa0609790:intron 75.0%
TGGCGCCCACCGTGGGGCAA+GGG - chr4_2:57354740-57354759 Msa0609790:intron 75.0%
! CCGCGTTGCAGCCCGCGTCG+GGG + chr4_2:57352406-57352425 None:intergenic 80.0%
!! CCCCGACGCGGGCTGCAACG+CGG - chr4_2:57352403-57352422 Msa0609790:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 57352157 57358546 57352157 ID=Msa0609790;Name=Msa0609790
chr4_2 mRNA 57352157 57358546 57352157 ID=Msa0609790-mRNA-1;Parent=Msa0609790;Name=Msa0609790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=26|1|1|1|0|0.5|2|173|189
chr4_2 exon 57352157 57352419 57352157 ID=Msa0609790-mRNA-1:exon:14885;Parent=Msa0609790-mRNA-1
chr4_2 exon 57358041 57358546 57358041 ID=Msa0609790-mRNA-1:exon:14884;Parent=Msa0609790-mRNA-1
chr4_2 five_prime_UTR 57358521 57358546 57358521 ID=Msa0609790-mRNA-1:five_prime_utr;Parent=Msa0609790-mRNA-1
chr4_2 CDS 57358041 57358520 57358041 ID=Msa0609790-mRNA-1:cds;Parent=Msa0609790-mRNA-1
chr4_2 CDS 57352330 57352419 57352330 ID=Msa0609790-mRNA-1:cds;Parent=Msa0609790-mRNA-1
chr4_2 three_prime_UTR 57352157 57352329 57352157 ID=Msa0609790-mRNA-1:three_prime_utr;Parent=Msa0609790-mRNA-1
Gene Sequence

>Msa0609790

ATGGAGGAAATAAACGAGTGGCAAGAAATCGAACAACACACCACTCTCGAATCCTCTGGATGGAACAGAATAATCATCAACGAAAACAACAATATTGAAGTTCAGGGAGGGAGTAATCCTCCTTCTTCTTGTTCTTCTTCTTCCACTCCTACCCATCATGAAGAAGGAATTTCCTCGCCCATGACGGCGTCAAGTTCCGTTGGTGGCGAGGAAGGTGAAGCCCCGACGCGGGCTGCAACGCGGTTGGATTGGGCTAATGAAATGAATAAGATGTTGAAGGTGCGGATGGAGGCTATGAGAGTGGAAATTGTGAGGGTGGCTTCTAAGGTTCGTAACTATGCAATGTGTGCGGGGGCGTTTTGGTCAATTACGTGCGTGGCTGGAGCTGTAGCTGTGACGGCGGTGTTGGTTTACGTCGGGATTCAAAGGCGTCGCCGGAAGGTGGACGGTTCGGAATATCTTCTTAGGCAAAAAGATGAGAAAATTAGCCAACTCTTGCTTAATATTGCACATCTGAATGAAGCCTTATCATCACGTCGCAAGGTTCAGGTGCATCGAATTAGTGGCTGA

Protein sequence

>Msa0609790

MEEINEWQEIEQHTTLESSGWNRIIINENNNIEVQGGSNPPSSCSSSSTPTHHEEGISSPMTASSSVGGEEGEAPTRAATRLDWANEMNKMLKVRMEAMRVEIVRVASKVRNYAMCAGAFWSITCVAGAVAVTAVLVYVGIQRRRRKVDGSEYLLRQKDEKISQLLLNIAHLNEALSSRRKVQVHRISG*