AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1034360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1034360 MtrunA17_Chr7g0257131 66.944 481 95 8 150 618 10 438 0.0 582
Msa1034360 MtrunA17_Chr7g0257141 76.046 263 24 2 318 580 4 227 5.14e-122 361
Msa1034360 MtrunA17_Chr7g0257121 72.539 193 40 4 2 182 4 195 3.37e-90 280
Msa1034360 MtrunA17_Chr1g0159641 63.158 190 55 5 5 182 7 193 7.94e-74 238
Msa1034360 MtrunA17_Chr1g0159631 53.680 231 86 6 150 365 36 260 6.62e-61 218
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1034360 AT1G77320.1 37.060 483 178 13 2 374 4 470 3.13e-86 290
Msa1034360 AT1G77320.3 37.267 483 177 14 2 374 4 470 6.05e-86 290
Msa1034360 AT1G77320.2 37.983 466 180 12 2 374 4 453 2.11e-85 288

Find 127 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAACTATGTACGTGTTTC+TGG 0.112741 7_1:+69830980 None:intergenic
AACGATTATCATATAATTTC+TGG 0.194979 7_1:-69831003 Msa1034360:CDS
GCAAAGTTAGGTCCTCTTTA+TGG 0.208714 7_1:-69825670 Msa1034360:CDS
AAGATGTCGGAGTTATTTAA+AGG 0.227278 7_1:-69831147 Msa1034360:CDS
TGAGGAGGATTGTAAGTCTA+AGG 0.252399 7_1:-69825599 Msa1034360:CDS
CAAATTCGTCGGGTGGAAAT+AGG 0.255544 7_1:+69831100 None:intergenic
CTCTGTGCCCTCTTTGAATA+TGG 0.262226 7_1:+69825331 None:intergenic
AAGTTGACACACATAGTAAT+TGG 0.269104 7_1:-69826646 Msa1034360:CDS
TCAATGAATTGAACTTTAAT+CGG 0.282887 7_1:-69826819 Msa1034360:CDS
CTTCACTTGCTGCTTTACTA+TGG 0.285585 7_1:-69830072 Msa1034360:CDS
TCTGCCTCTTTAACAAATAA+TGG 0.287870 7_1:+69826868 None:intergenic
TTGTGCACCTCCTGTTCTTC+GGG 0.326864 7_1:+69825295 None:intergenic
AACCATTCATAAGTAACTAT+TGG 0.328810 7_1:+69828697 None:intergenic
GATGAATTAATGATAGAAAT+GGG 0.328981 7_1:-69829782 Msa1034360:CDS
AAGTAACTATTGGTTTCTTC+AGG 0.330112 7_1:+69828707 None:intergenic
GTTGTGCACCTCCTGTTCTT+CGG 0.334764 7_1:+69825294 None:intergenic
TTCATCAGATTCAGAATCAT+TGG 0.337510 7_1:+69826789 None:intergenic
TTATGTCTGGCAGTGGGCTT+TGG 0.347087 7_1:-69828734 Msa1034360:intron
ATTAAAGTTCAATTCATTGA+TGG 0.347109 7_1:+69826822 None:intergenic
AGATGAATTAATGATAGAAA+TGG 0.354164 7_1:-69829783 Msa1034360:CDS
TGTTTCTCAAGAGTCATATA+AGG 0.355726 7_1:-69828647 Msa1034360:intron
AATGGAGAAGCTAATTAATA+TGG 0.365938 7_1:-69826710 Msa1034360:CDS
GATAAAGATCCACTCTGAAC+AGG 0.374142 7_1:+69826901 None:intergenic
CAGCAAGTGAAGGTTTGTTT+AGG 0.382075 7_1:+69830083 None:intergenic
GATTCAATTAGGCAAGAATT+CGG 0.384279 7_1:-69827704 Msa1034360:CDS
GACGACTTGAGTGCAAATTT+AGG 0.395237 7_1:-69825796 Msa1034360:CDS
CAATCTCAAAGCGAGGCTTT+TGG 0.395682 7_1:+69825758 None:intergenic
CAGGGAACCGTCAACACATT+GGG 0.403730 7_1:-69824884 Msa1034360:CDS
ATTCAATTAGGCAAGAATTC+GGG 0.418099 7_1:-69827703 Msa1034360:CDS
TATCATTTAAAGACAAGCAT+TGG 0.418259 7_1:+69826668 None:intergenic
GATTGCAGAATATCACTTGT+TGG 0.423098 7_1:-69826748 Msa1034360:CDS
AAGAAAGCAATGGAGGCGTT+TGG 0.428535 7_1:-69825538 Msa1034360:CDS
TGTTCCATTATTTGTTAAAG+AGG 0.429941 7_1:-69826872 Msa1034360:CDS
AAAGAAGAATCTAGAAAAGA+AGG 0.430989 7_1:-69825965 Msa1034360:CDS
ATCATTTAAAGACAAGCATT+GGG 0.437953 7_1:+69826669 None:intergenic
AACCAATAGTTACTTATGAA+TGG 0.439724 7_1:-69828699 Msa1034360:CDS
AAGAACAGGAGGTGCACAAC+AGG 0.452673 7_1:-69825291 Msa1034360:CDS
ATGCTTTGACGCATGCTACT+TGG 0.453853 7_1:-69827675 Msa1034360:CDS
GTGAGAACTGTTATTTCTCT+AGG 0.458019 7_1:-69826368 Msa1034360:CDS
TAATAATCAACCCGAAGAAC+AGG 0.463443 7_1:-69825305 Msa1034360:CDS
CAATGAATTGAACTTTAATC+GGG 0.464809 7_1:-69826818 Msa1034360:CDS
AGATGTCGGAGTTATTTAAA+GGG 0.467760 7_1:-69831146 Msa1034360:CDS
TGAGGCTTATAAGCTTTATG+AGG 0.472144 7_1:-69825617 Msa1034360:CDS
AATTCATTGATGGTCTGTAA+TGG 0.472352 7_1:+69826832 None:intergenic
GAAGACTTGAGGGCAAAGTT+AGG 0.480088 7_1:-69825682 Msa1034360:CDS
ATAATAACTAGGATTCAATT+AGG 0.481766 7_1:-69827715 Msa1034360:CDS
CACTTGCTGCTTTACTATGG+AGG 0.490581 7_1:-69830069 Msa1034360:CDS
GCGCGTTTGCTTCGAGATTG+CGG 0.499064 7_1:-69825869 Msa1034360:CDS
ATCTCTAAGTATCGTGAGAT+GGG 0.507902 7_1:-69825565 Msa1034360:CDS
AGTTGACACACATAGTAATT+GGG 0.508048 7_1:-69826645 Msa1034360:CDS
ATTATGTTGTTAAAACCTCA+TGG 0.512672 7_1:-69826340 Msa1034360:CDS
ATTAATATGGTGCGTAAAGG+TGG 0.513524 7_1:-69826697 Msa1034360:CDS
TTAAACTAGTAATAATAACT+AGG 0.516671 7_1:-69827726 Msa1034360:CDS
AAACATTGAGAACCACTTCA+AGG 0.518932 7_1:-69825449 Msa1034360:CDS
GGCTTATAAGCTTTATGAGG+AGG 0.520574 7_1:-69825614 Msa1034360:CDS
GGAATTAAAGAGACGACAAA+AGG 0.520847 7_1:-69825734 Msa1034360:CDS
GGAATTAAAGAGACGACAAA+AGG 0.520847 7_1:-69825848 Msa1034360:CDS
AAGAATCGACGAAGACTTGA+GGG 0.521706 7_1:-69825692 Msa1034360:CDS
TTCTGCAATCTGCTAAATAC+CGG 0.522822 7_1:+69826761 None:intergenic
TGAACTGCGTCAAATTCGTC+GGG 0.528133 7_1:+69831090 None:intergenic
CTAATTAATATGGTGCGTAA+AGG 0.529112 7_1:-69826700 Msa1034360:CDS
AAAGCCTCGCTTTGAGATTG+CGG 0.530371 7_1:-69825755 Msa1034360:CDS
ATATACCAGACCTTGTACTC+TGG 0.530435 7_1:+69829695 None:intergenic
AACATTGAGAACCACTTCAA+GGG 0.533499 7_1:-69825448 Msa1034360:CDS
CACAAGGCCGTTGAAGATAA+CGG 0.534122 7_1:-69831069 Msa1034360:CDS
GTGAACTGCGTCAAATTCGT+CGG 0.535561 7_1:+69831089 None:intergenic
CATCTCTAAGTATCGTGAGA+TGG 0.537311 7_1:-69825566 Msa1034360:CDS
GTTTGTTTAGGCAAGGGAAG+AGG 0.537365 7_1:+69830095 None:intergenic
TCAAAATCATCCCCTTGAAG+TGG 0.537507 7_1:+69825437 None:intergenic
AGTGAAGGTTTGTTTAGGCA+AGG 0.537726 7_1:+69830088 None:intergenic
GTTCTTCAATGTGCTAAAGA+AGG 0.540178 7_1:-69830122 Msa1034360:CDS
GTGTTTCTACAGGGAAAGGA+AGG 0.547035 7_1:-69826396 Msa1034360:intron
ATGAATTAATGATAGAAATG+GGG 0.548594 7_1:-69829781 Msa1034360:CDS
TCAGGGAACCGTCAACACAT+TGG 0.553738 7_1:-69824885 Msa1034360:intron
TGTTAAAACCTCATGGCTTG+AGG 0.558728 7_1:-69826333 Msa1034360:CDS
GTCACTGATACAGAATCTAC+AGG 0.559283 7_1:+69827757 None:intergenic
CGAATTTGACGCAGTTCACA+AGG 0.560641 7_1:-69831085 Msa1034360:CDS
AGGTCAGAAAACGTTGGTGG+AGG 0.560767 7_1:-69826004 Msa1034360:CDS
TGAATTAATGATAGAAATGG+GGG 0.563673 7_1:-69829780 Msa1034360:CDS
TTGATTATGCTGCTTCTCGT+AGG 0.565113 7_1:-69825903 Msa1034360:CDS
ACATAGTTTAAATCTGATGA+CGG 0.568188 7_1:+69829740 None:intergenic
CTGAATCTGATGAAAATGAC+CGG 0.568259 7_1:-69826780 Msa1034360:CDS
CGTTGGTGGAGGCATCCACT+AGG 0.568742 7_1:-69825993 Msa1034360:CDS
GTGAAGGTTTGTTTAGGCAA+GGG 0.571311 7_1:+69830089 None:intergenic
GCATTGTACCGTCGTAGAAG+AGG 0.573523 7_1:+69826284 None:intergenic
TGGGTTTGATGCGGATCAGA+AGG 0.575165 7_1:-69830027 Msa1034360:intron
ATTGAACTTTAATCGGGCTG+TGG 0.578792 7_1:-69826812 Msa1034360:CDS
TAAGAATCGACGAAGACTTG+AGG 0.580620 7_1:-69825693 Msa1034360:CDS
GAGGAGGATTGTAAGTCTAA+GGG 0.581483 7_1:-69825598 Msa1034360:CDS
AATATGGTGCGTAAAGGTGG+AGG 0.581922 7_1:-69826694 Msa1034360:CDS
CTTTGACGCATGCTACTTGG+TGG 0.585262 7_1:-69827672 Msa1034360:CDS
TTCAGGTCAGAAAACGTTGG+TGG 0.586996 7_1:-69826007 Msa1034360:intron
AAAGAGACGACAAAAGGAGA+TGG 0.591489 7_1:-69825728 Msa1034360:CDS
AAAGAGACGACAAAAGGAGA+TGG 0.591489 7_1:-69825842 Msa1034360:CDS
TGAATGGTTAAAGCAATGCT+CGG 0.595248 7_1:-69828683 Msa1034360:CDS
ATGGATAGCATGTCTGAATG+AGG 0.595727 7_1:-69826932 Msa1034360:intron
GATGGGATTTAAGAAAGCAA+TGG 0.597493 7_1:-69825548 Msa1034360:CDS
TGTTGACTTAGCACAAGTGC+TGG 0.601901 7_1:-69825926 Msa1034360:CDS
AGCAAGTCCCTCTTCTACGA+CGG 0.602210 7_1:-69826292 Msa1034360:CDS
TGTGCCCTCTTTGAATATGG+AGG 0.602441 7_1:+69825334 None:intergenic
CATTGTACCGTCGTAGAAGA+GGG 0.602791 7_1:+69826285 None:intergenic
GCAAATTTAGGTCCTCGTGA+TGG 0.603856 7_1:-69825784 Msa1034360:CDS
CTGTCAAAATACTTGCATGT+GGG 0.607556 7_1:-69830046 Msa1034360:CDS
ACGACAAAAGGAGATGGAGA+TGG 0.607708 7_1:-69825836 Msa1034360:CDS
TCAGGATCAGTCTTATCACC+AGG 0.611037 7_1:+69825409 None:intergenic
ATGAGCCTCCATATTCAAAG+AGG 0.613128 7_1:-69825339 Msa1034360:CDS
GCTGTCAAAATACTTGCATG+TGG 0.614749 7_1:-69830047 Msa1034360:CDS
GAATAGACTTACGTATATGT+CGG 0.615228 7_1:+69826619 None:intergenic
CATAGTAAAGCAGCAAGTGA+AGG 0.618938 7_1:+69830073 None:intergenic
AGATCCACTCTGAACAGGGT+AGG 0.621048 7_1:+69826906 None:intergenic
AACGGCGCTCAAGTTCACAT+TGG 0.623491 7_1:-69831051 Msa1034360:CDS
ATAAAGATCCACTCTGAACA+GGG 0.625634 7_1:+69826902 None:intergenic
ACATTGAGAACCACTTCAAG+GGG 0.633314 7_1:-69825447 Msa1034360:CDS
GGGATTTAAGAAAGCAATGG+AGG 0.645850 7_1:-69825545 Msa1034360:CDS
TAATCAACCCGAAGAACAGG+AGG 0.646036 7_1:-69825302 Msa1034360:CDS
CATCTCACGATACTTAGAGA+TGG 0.647887 7_1:+69825567 None:intergenic
TTGAGCGCCGTTATCTTCAA+CGG 0.648077 7_1:+69831062 None:intergenic
ACTGCGTCAAATTCGTCGGG+TGG 0.651778 7_1:+69831093 None:intergenic
AATCACTGTTGTCCAAGTGA+AGG 0.654667 7_1:+69824799 None:intergenic
ACGACAAAAGGAGATGGAGA+CGG 0.663557 7_1:-69825722 Msa1034360:CDS
TGAGCCTCCATATTCAAAGA+GGG 0.666941 7_1:-69825338 Msa1034360:CDS
GAATCCTACCCTGTTCAGAG+TGG 0.669776 7_1:-69826910 Msa1034360:CDS
ACTTGCATGTGGGTTTGATG+CGG 0.673281 7_1:-69830036 Msa1034360:CDS
TCATTGATGGTCTGTAATGG+AGG 0.675161 7_1:+69826835 None:intergenic
ATCACAATCCTCAAGCCATG+AGG 0.703903 7_1:+69826325 None:intergenic
TGGTTCAGGTCAGAAAACGT+TGG 0.715570 7_1:-69826010 Msa1034360:intron
TATTCAAAGAGGGCACAGAG+TGG 0.749556 7_1:-69825328 Msa1034360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAGAATAATATAAAAACA+TGG + chr7_1:69826288-69826307 None:intergenic 10.0%
!!! ACAATTTTAATATTTACAAT+AGG + chr7_1:69827080-69827099 None:intergenic 10.0%
!!! TTAATATTTTGAGTTTAAAT+AGG - chr7_1:69827960-69827979 Msa1034360:intron 10.0%
!!! TTATTTTTCGTATTTTTATA+TGG - chr7_1:69828994-69829013 Msa1034360:intron 10.0%
!! GATATTAAGAATAAATTTAA+TGG - chr7_1:69829350-69829369 Msa1034360:intron 10.0%
!!! TTTTTTAAGTTTTTAAATTC+AGG - chr7_1:69829823-69829842 Msa1034360:intron 10.0%
!!! TTTTTTGTTTTAGTTTAGAT+TGG - chr7_1:69825596-69825615 Msa1034360:CDS 15.0%
!! CAAAAAAAAAAAAAAAGTGA+AGG + chr7_1:69826905-69826924 None:intergenic 15.0%
!!! ACTTTTTTTTTTTTTTTGCT+TGG - chr7_1:69826907-69826926 Msa1034360:CDS 15.0%
!!! ATTTTGTCTATTATTTGTAT+TGG - chr7_1:69827377-69827396 Msa1034360:intron 15.0%
!! AAAAAAAATGGTATAAATCA+AGG + chr7_1:69827634-69827653 None:intergenic 15.0%
!! TTAAACTAGTAATAATAACT+AGG - chr7_1:69828219-69828238 Msa1034360:intron 15.0%
!! AACGATTATCATATAATTTC+TGG - chr7_1:69824942-69824961 Msa1034360:intron 20.0%
!! TTTGAATAACTTAAATCCAA+AGG - chr7_1:69825063-69825082 Msa1034360:intron 20.0%
!! ACACTTAATAATTTGAGAAA+AGG - chr7_1:69825324-69825343 Msa1034360:CDS 20.0%
!!! TGTTTCTTTTATTATTGAGT+AGG - chr7_1:69825790-69825809 Msa1034360:CDS 20.0%
!!! TTAAACCTTAGAATTTTAGA+GGG + chr7_1:69826042-69826061 None:intergenic 20.0%
!! AGATGAATTAATGATAGAAA+TGG - chr7_1:69826162-69826181 Msa1034360:intron 20.0%
!! GATGAATTAATGATAGAAAT+GGG - chr7_1:69826163-69826182 Msa1034360:intron 20.0%
!! ATGAATTAATGATAGAAATG+GGG - chr7_1:69826164-69826183 Msa1034360:intron 20.0%
!!! TGTTTTTATGTTATACATTG+GGG + chr7_1:69826367-69826386 None:intergenic 20.0%
!!! GTGTTTTTATGTTATACATT+GGG + chr7_1:69826368-69826387 None:intergenic 20.0%
!!! AGTGTTTTTATGTTATACAT+TGG + chr7_1:69826369-69826388 None:intergenic 20.0%
!!! GGTAGTAGTATAAATTTTTT+AGG - chr7_1:69826505-69826524 Msa1034360:intron 20.0%
!!! GAAAAGCTTATTTTACAAAA+TGG - chr7_1:69827467-69827486 Msa1034360:intron 20.0%
!!! TTCTAATATATCCTTTTGAT+AGG - chr7_1:69827535-69827554 Msa1034360:intron 20.0%
!! AAAATTGTGAAAGACATTTA+TGG + chr7_1:69827680-69827699 None:intergenic 20.0%
!! TTATTAATAAGTGTGAACAA+GGG + chr7_1:69827822-69827841 None:intergenic 20.0%
!! ATTATTAATAAGTGTGAACA+AGG + chr7_1:69827823-69827842 None:intergenic 20.0%
!! ATAAAATTCGTCAATATAAG+CGG + chr7_1:69827941-69827960 None:intergenic 20.0%
!!! TATTTTGAGTTTAAATAGGT+AGG - chr7_1:69827964-69827983 Msa1034360:intron 20.0%
!!! ATTCATTTTTACAAGAATTC+AGG - chr7_1:69827994-69828013 Msa1034360:intron 20.0%
!!! CAGTATTTAACTATTTGTTA+TGG - chr7_1:69828046-69828065 Msa1034360:intron 20.0%
!! ATAATAACTAGGATTCAATT+AGG - chr7_1:69828230-69828249 Msa1034360:intron 20.0%
!! GGTAGAAAACATATATAAAT+AGG + chr7_1:69828346-69828365 None:intergenic 20.0%
!! TCATTGTCACAATATTAATA+TGG + chr7_1:69828769-69828788 None:intergenic 20.0%
!! TTAATATTGTGACAATGAAA+TGG - chr7_1:69828771-69828790 Msa1034360:intron 20.0%
!! ATTAAAGTTCAATTCATTGA+TGG + chr7_1:69829126-69829145 None:intergenic 20.0%
!! TCAATGAATTGAACTTTAAT+CGG - chr7_1:69829126-69829145 Msa1034360:intron 20.0%
!!! GCTTTTTTATGGATTTAATT+TGG - chr7_1:69829477-69829496 Msa1034360:intron 20.0%
!!! TCAATCTTTAACTCATTTTT+AGG + chr7_1:69830311-69830330 None:intergenic 20.0%
!! TAAAAATGAGTTAAAGATTG+AGG - chr7_1:69830310-69830329 Msa1034360:intron 20.0%
! CAAATGTAGTTACACTTAAT+CGG + chr7_1:69825155-69825174 None:intergenic 25.0%
!!! CAATTTTCTAGAATTATGAC+AGG + chr7_1:69825252-69825271 None:intergenic 25.0%
!!! TCATTTTTGGCAATTTGATA+AGG - chr7_1:69825639-69825658 Msa1034360:CDS 25.0%
! ACTACACATGTATATAAACA+CGG + chr7_1:69825714-69825733 None:intergenic 25.0%
!! CTTAAACCTTAGAATTTTAG+AGG + chr7_1:69826043-69826062 None:intergenic 25.0%
!! AAGTTATCAGTATTTTCTCT+TGG - chr7_1:69826060-69826079 Msa1034360:intron 25.0%
!! GTATTTTCTCTTGGAATATT+AGG - chr7_1:69826069-69826088 Msa1034360:intron 25.0%
! TGAATTAATGATAGAAATGG+GGG - chr7_1:69826165-69826184 Msa1034360:intron 25.0%
! ACATAGTTTAAATCTGATGA+CGG + chr7_1:69826208-69826227 None:intergenic 25.0%
!! TGTCATCGTAAAAAATGTTT+TGG - chr7_1:69826225-69826244 Msa1034360:intron 25.0%
!! GTTTTTATGTTATACATTGG+GGG + chr7_1:69826366-69826385 None:intergenic 25.0%
! CCAAAAGAAGAGTTAATTAA+CGG + chr7_1:69826474-69826493 None:intergenic 25.0%
! AATTTATCTTGAACTACAGA+TGG - chr7_1:69826566-69826585 Msa1034360:intron 25.0%
!!! TCACTGGTTGTATTATTTTA+TGG - chr7_1:69826620-69826639 Msa1034360:intron 25.0%
! GAATAAATAATGCACAATAG+TGG - chr7_1:69826821-69826840 Msa1034360:CDS 25.0%
!! CTACAACAAACATTTTTCTT+AGG - chr7_1:69826879-69826898 Msa1034360:CDS 25.0%
! AACCAATAGTTACTTATGAA+TGG - chr7_1:69827246-69827265 Msa1034360:intron 25.0%
! AACCATTCATAAGTAACTAT+TGG + chr7_1:69827251-69827270 None:intergenic 25.0%
!!! AAGCTTATTTTACAAAATGG+TGG - chr7_1:69827470-69827489 Msa1034360:intron 25.0%
! TATTTGATAGACCTATCAAA+AGG + chr7_1:69827549-69827568 None:intergenic 25.0%
!! TCTTTCACAATTTTGCTTTA+AGG - chr7_1:69827686-69827705 Msa1034360:CDS 25.0%
! GAAAATGTTAATGTAGACAT+GGG + chr7_1:69827751-69827770 None:intergenic 25.0%
!!! ATCTACTTTTTGAGACTTTA+AGG - chr7_1:69827793-69827812 Msa1034360:intron 25.0%
! TAATTGATAAGAACCAACAA+TGG + chr7_1:69827896-69827915 None:intergenic 25.0%
!!! AATCTTTTTTCTACATTAGC+TGG - chr7_1:69828394-69828413 Msa1034360:intron 25.0%
! AATTCAAAGATCTGTTATTG+AGG - chr7_1:69828663-69828682 Msa1034360:CDS 25.0%
!! TGCTTTAATGCTATATGTTT+TGG - chr7_1:69828829-69828848 Msa1034360:intron 25.0%
!!! TATATGTTTTGGTACCTTTT+GGG - chr7_1:69828840-69828859 Msa1034360:intron 25.0%
!! TGTTCCATTATTTGTTAAAG+AGG - chr7_1:69829073-69829092 Msa1034360:intron 25.0%
! CAATGAATTGAACTTTAATC+GGG - chr7_1:69829127-69829146 Msa1034360:intron 25.0%
! AATGGAGAAGCTAATTAATA+TGG - chr7_1:69829235-69829254 Msa1034360:intron 25.0%
! ATCATTTAAAGACAAGCATT+GGG + chr7_1:69829279-69829298 None:intergenic 25.0%
! TATCATTTAAAGACAAGCAT+TGG + chr7_1:69829280-69829299 None:intergenic 25.0%
!!! TCACAAATATGGCTTTTTTA+TGG - chr7_1:69829466-69829485 Msa1034360:intron 25.0%
!! TAAATAGTGGAAAAGGAATA+TGG + chr7_1:69829507-69829526 None:intergenic 25.0%
!! TAGATCATAAATAGTGGAAA+AGG + chr7_1:69829514-69829533 None:intergenic 25.0%
! AGAAGATAGATCATAAATAG+TGG + chr7_1:69829520-69829539 None:intergenic 25.0%
! ATTATGTTGTTAAAACCTCA+TGG - chr7_1:69829605-69829624 Msa1034360:intron 25.0%
!! TGTGATATTCTTTTTCCAAA+AGG - chr7_1:69829685-69829704 Msa1034360:intron 25.0%
!! TAATCATATAGCAAACCTTT+TGG + chr7_1:69829703-69829722 None:intergenic 25.0%
!!! TACTTTTTGGTTAATCTACT+AGG - chr7_1:69829748-69829767 Msa1034360:CDS 25.0%
! AATTCAGGTAACTTAGTAAA+AGG - chr7_1:69829838-69829857 Msa1034360:intron 25.0%
!!! ATTCTTCTTTTTTATCCTAG+TGG + chr7_1:69829970-69829989 None:intergenic 25.0%
! AAAGAAGAATCTAGAAAAGA+AGG - chr7_1:69829980-69829999 Msa1034360:intron 25.0%
!!! TTAACTCATTTTTAGGCTTT+TGG + chr7_1:69830304-69830323 None:intergenic 25.0%
!! TCAATGTTTTCTTTTCTAAC+TGG + chr7_1:69830485-69830504 None:intergenic 25.0%
!! TAAACAAATTTTGCAACATC+AGG + chr7_1:69830557-69830576 None:intergenic 25.0%
!!! AGTTTGTAGTTGATAAATCA+CGG - chr7_1:69830780-69830799 Msa1034360:intron 25.0%
!! TATATTTTCCTATTGTCTAG+TGG + chr7_1:69830972-69830991 None:intergenic 25.0%
! CAATTTTCTCGAATTATGAG+TGG + chr7_1:69825130-69825149 None:intergenic 30.0%
AACTGAATATACACATGTGT+CGG - chr7_1:69825351-69825370 Msa1034360:CDS 30.0%
TGTAGCAACAAAAAATGTGT+GGG + chr7_1:69825498-69825517 None:intergenic 30.0%
ATGTAGCAACAAAAAATGTG+TGG + chr7_1:69825499-69825518 None:intergenic 30.0%
!!! CACATTTTTTGTTGCTACAT+AGG - chr7_1:69825499-69825518 Msa1034360:CDS 30.0%
AAAGTGCAACAAAAATGTGT+GGG + chr7_1:69825542-69825561 None:intergenic 30.0%
!! CTTAGAATTTTAGAGGGTTT+TGG + chr7_1:69826036-69826055 None:intergenic 30.0%
!! CAAAACCCTCTAAAATTCTA+AGG - chr7_1:69826034-69826053 Msa1034360:intron 30.0%
ATTGAGAGCAAAAAAAGGAA+CGG + chr7_1:69826105-69826124 None:intergenic 30.0%
!!! TTCCTTTTTTTGCTCTCAAT+TGG - chr7_1:69826105-69826124 Msa1034360:intron 30.0%
TTCCAATTGAGAGCAAAAAA+AGG + chr7_1:69826110-69826129 None:intergenic 30.0%
!! TGTAAAAAGCATCTAGTCTA+AGG - chr7_1:69826425-69826444 Msa1034360:intron 30.0%
!! GTAAAAAGCATCTAGTCTAA+GGG - chr7_1:69826426-69826445 Msa1034360:intron 30.0%
! CCGTTAATTAACTCTTCTTT+TGG - chr7_1:69826471-69826490 Msa1034360:intron 30.0%
! TGCTCATATATTCTGTTTCT+TGG - chr7_1:69826982-69827001 Msa1034360:intron 30.0%
! TGGTCTATCTCATTTAGTTT+CGG - chr7_1:69827002-69827021 Msa1034360:intron 30.0%
TAGGAAGATGAACTTATTAG+TGG + chr7_1:69827061-69827080 None:intergenic 30.0%
AATATACACCATGTTATGTC+TGG - chr7_1:69827198-69827217 Msa1034360:intron 30.0%
!! AAGTAACTATTGGTTTCTTC+AGG + chr7_1:69827241-69827260 None:intergenic 30.0%
TGTTTCTCAAGAGTCATATA+AGG - chr7_1:69827298-69827317 Msa1034360:intron 30.0%
ATAAGGTTCTTCCTTTCTAA+TGG - chr7_1:69827315-69827334 Msa1034360:intron 30.0%
TAAGGTTCTTCCTTTCTAAT+GGG - chr7_1:69827316-69827335 Msa1034360:intron 30.0%
AGATCTTTAACCCATTAGAA+AGG + chr7_1:69827329-69827348 None:intergenic 30.0%
TTTAAATGTTCCTTGAGAAG+AGG - chr7_1:69827596-69827615 Msa1034360:intron 30.0%
AAGCTGCAGGAAAAAAAAAA+TGG + chr7_1:69827646-69827665 None:intergenic 30.0%
GGAAAATGTTAATGTAGACA+TGG + chr7_1:69827752-69827771 None:intergenic 30.0%
ATTATCATTTGTGCAAGACA+AGG + chr7_1:69827773-69827792 None:intergenic 30.0%
AACAATGGATGTTCTCTAAA+AGG + chr7_1:69827881-69827900 None:intergenic 30.0%
!! TTTTAGAGAACATCCATTGT+TGG - chr7_1:69827880-69827899 Msa1034360:intron 30.0%
ATGTATCAATACATCAAAGC+AGG + chr7_1:69828024-69828043 None:intergenic 30.0%
GATTCAATTAGGCAAGAATT+CGG - chr7_1:69828241-69828260 Msa1034360:intron 30.0%
ATTCAATTAGGCAAGAATTC+GGG - chr7_1:69828242-69828261 Msa1034360:intron 30.0%
CACTAATTGTAAGTACAGAA+GGG + chr7_1:69828574-69828593 None:intergenic 30.0%
TCACTAATTGTAAGTACAGA+AGG + chr7_1:69828575-69828594 None:intergenic 30.0%
! AAGCATAAGATGGCAAATTT+TGG - chr7_1:69828741-69828760 Msa1034360:intron 30.0%
! AGCATAAGATGGCAAATTTT+GGG - chr7_1:69828742-69828761 Msa1034360:intron 30.0%
!!! CTATATGTTTTGGTACCTTT+TGG - chr7_1:69828839-69828858 Msa1034360:intron 30.0%
! TGTTTAGTTCAAAACCCAAA+AGG + chr7_1:69828857-69828876 None:intergenic 30.0%
GCAACGAAATGAAAGAATAA+CGG + chr7_1:69828908-69828927 None:intergenic 30.0%
AATGTTACCATAGATAAGCT+TGG - chr7_1:69828951-69828970 Msa1034360:intron 30.0%
TCTGCCTCTTTAACAAATAA+TGG + chr7_1:69829080-69829099 None:intergenic 30.0%
! AATTCATTGATGGTCTGTAA+TGG + chr7_1:69829116-69829135 None:intergenic 30.0%
TTCATCAGATTCAGAATCAT+TGG + chr7_1:69829159-69829178 None:intergenic 30.0%
CTAATTAATATGGTGCGTAA+AGG - chr7_1:69829245-69829264 Msa1034360:intron 30.0%
AAGTTGACACACATAGTAAT+TGG - chr7_1:69829299-69829318 Msa1034360:intron 30.0%
AGTTGACACACATAGTAATT+GGG - chr7_1:69829300-69829319 Msa1034360:intron 30.0%
GAATAGACTTACGTATATGT+CGG + chr7_1:69829329-69829348 None:intergenic 30.0%
TATTTGTGAAACTAAGATCC+AGG + chr7_1:69829455-69829474 None:intergenic 30.0%
GGATCTTAGTTTCACAAATA+TGG - chr7_1:69829455-69829474 Msa1034360:intron 30.0%
GACTTTATTGTGTGTTTGAA+TGG - chr7_1:69829915-69829934 Msa1034360:intron 30.0%
!! GTTTGTAGTTGATAAATCAC+GGG - chr7_1:69830781-69830800 Msa1034360:intron 30.0%
!! TTTGTAGTTGATAAATCACG+GGG - chr7_1:69830782-69830801 Msa1034360:intron 30.0%
TCATTTGTATCACACTATGT+CGG + chr7_1:69830949-69830968 None:intergenic 30.0%
AATTGTCATGACGATATGTT+TGG - chr7_1:69831034-69831053 Msa1034360:CDS 30.0%
TACAACTATGTACGTGTTTC+TGG + chr7_1:69824968-69824987 None:intergenic 35.0%
ATACAATGTTCATGCTACTG+AGG - chr7_1:69825396-69825415 Msa1034360:CDS 35.0%
TGTAGCAACAAAACTTCAGA+TGG + chr7_1:69825454-69825473 None:intergenic 35.0%
!!! TCTGAAGTTTTGTTGCTACA+TGG - chr7_1:69825454-69825473 Msa1034360:CDS 35.0%
!!! CTGAAGTTTTGTTGCTACAT+GGG - chr7_1:69825455-69825474 Msa1034360:CDS 35.0%
! GAAAGTGCAACAAAAATGTG+TGG + chr7_1:69825543-69825562 None:intergenic 35.0%
! ATTGGACAATTAGAGCGTTT+AGG - chr7_1:69825614-69825633 Msa1034360:CDS 35.0%
!! GAGCGTTTAGGTTTCATTTT+TGG - chr7_1:69825626-69825645 Msa1034360:CDS 35.0%
GTTCTTCAATGTGCTAAAGA+AGG - chr7_1:69825823-69825842 Msa1034360:CDS 35.0%
CTGTCAAAATACTTGCATGT+GGG - chr7_1:69825899-69825918 Msa1034360:CDS 35.0%
!!! AATTTTAGAGGGTTTTGGAG+GGG + chr7_1:69826031-69826050 None:intergenic 35.0%
!!! GAATTTTAGAGGGTTTTGGA+GGG + chr7_1:69826032-69826051 None:intergenic 35.0%
!! AGAATTTTAGAGGGTTTTGG+AGG + chr7_1:69826033-69826052 None:intergenic 35.0%
AGGATAATAATGTGCAACAG+AGG + chr7_1:69826341-69826360 None:intergenic 35.0%
TATGTTATACATTGGGGGAT+AGG + chr7_1:69826361-69826380 None:intergenic 35.0%
!! CTTCTTTTGGCTAGTAGTTT+AGG - chr7_1:69826484-69826503 Msa1034360:intron 35.0%
TGAAGCTTATGTTAGTTCAC+TGG - chr7_1:69826604-69826623 Msa1034360:intron 35.0%
TGGTTTATCTCCTAGATTGT+TGG - chr7_1:69826927-69826946 Msa1034360:CDS 35.0%
GGTTTATCTCCTAGATTGTT+GGG - chr7_1:69826928-69826947 Msa1034360:intron 35.0%
GTTTATCTCCTAGATTGTTG+GGG - chr7_1:69826929-69826948 Msa1034360:intron 35.0%
GTGGCTAATATGACTCTTAT+TGG - chr7_1:69826959-69826978 Msa1034360:intron 35.0%
! GGTCTATCTCATTTAGTTTC+GGG - chr7_1:69827003-69827022 Msa1034360:intron 35.0%
AGATTGCATATGAGTGGAAT+TGG + chr7_1:69827132-69827151 None:intergenic 35.0%
TGAATGGTTAAAGCAATGCT+CGG - chr7_1:69827262-69827281 Msa1034360:intron 35.0%
GACAAAATTTACAACCTGCT+CGG + chr7_1:69827365-69827384 None:intergenic 35.0%
AAATTCGTCAATATAAGCGG+AGG + chr7_1:69827938-69827957 None:intergenic 35.0%
!! TGTATTTCTAGCATCTGCAA+CGG - chr7_1:69828107-69828126 Msa1034360:intron 35.0%
TAAAAACCTGTCTTCGCAAA+AGG + chr7_1:69828465-69828484 None:intergenic 35.0%
CTGTTATTGAGGTTTGAACA+TGG - chr7_1:69828674-69828693 Msa1034360:CDS 35.0%
ATCTTATGCTTATCACCTTC+AGG + chr7_1:69828732-69828751 None:intergenic 35.0%
TGAAGGTGATAAGCATAAGA+TGG - chr7_1:69828731-69828750 Msa1034360:intron 35.0%
! GCATAAGATGGCAAATTTTG+GGG - chr7_1:69828743-69828762 Msa1034360:intron 35.0%
ATAAAGATCCACTCTGAACA+GGG + chr7_1:69829046-69829065 None:intergenic 35.0%
CTGAATCTGATGAAAATGAC+CGG - chr7_1:69829165-69829184 Msa1034360:intron 35.0%
TTCTGCAATCTGCTAAATAC+CGG + chr7_1:69829187-69829206 None:intergenic 35.0%
GATTGCAGAATATCACTTGT+TGG - chr7_1:69829197-69829216 Msa1034360:intron 35.0%
!!! TGGTTTTGAAGCTTCTGAAA+TGG - chr7_1:69829217-69829236 Msa1034360:intron 35.0%
ATTAATATGGTGCGTAAAGG+TGG - chr7_1:69829248-69829267 Msa1034360:intron 35.0%
GTATCAATGTAGATGATTCC+TGG - chr7_1:69829434-69829453 Msa1034360:intron 35.0%
! TCATGCATTTGTGTTTCTAC+AGG - chr7_1:69829539-69829558 Msa1034360:intron 35.0%
! CATGCATTTGTGTTTCTACA+GGG - chr7_1:69829540-69829559 Msa1034360:intron 35.0%
! ATTTGTGTTTCTACAGGGAA+AGG - chr7_1:69829545-69829564 Msa1034360:intron 35.0%
!! GTGAGAACTGTTATTTCTCT+AGG - chr7_1:69829577-69829596 Msa1034360:intron 35.0%
AAAAGTAGACACAGAACACA+CGG + chr7_1:69829735-69829754 None:intergenic 35.0%
!! TGTGTTCTGTGTCTACTTTT+TGG - chr7_1:69829735-69829754 Msa1034360:CDS 35.0%
TCAGGTAACTTAGTAAAAGG+AGG - chr7_1:69829841-69829860 Msa1034360:intron 35.0%
ATTGTGTGTTTGAATGGTTC+AGG - chr7_1:69829921-69829940 Msa1034360:intron 35.0%
GGAATTAAAGAGACGACAAA+AGG - chr7_1:69830097-69830116 Msa1034360:CDS 35.0%
GGAATTAAAGAGACGACAAA+AGG - chr7_1:69830097-69830116 Msa1034360:CDS 35.0%
! TGAGGCTTATAAGCTTTATG+AGG - chr7_1:69830328-69830347 Msa1034360:intron 35.0%
! ATCTCTAAGTATCGTGAGAT+GGG - chr7_1:69830380-69830399 Msa1034360:intron 35.0%
GATGGGATTTAAGAAAGCAA+TGG - chr7_1:69830397-69830416 Msa1034360:intron 35.0%
AAACATTGAGAACCACTTCA+AGG - chr7_1:69830496-69830515 Msa1034360:intron 35.0%
AACATTGAGAACCACTTCAA+GGG - chr7_1:69830497-69830516 Msa1034360:intron 35.0%
TAATAATCAACCCGAAGAAC+AGG - chr7_1:69830640-69830659 Msa1034360:intron 35.0%
GTTCAAGTCTAGACATGAAA+AGG + chr7_1:69830927-69830946 None:intergenic 35.0%
ACAAATGACCACTAGACAAT+AGG - chr7_1:69830961-69830980 Msa1034360:intron 35.0%
!!! TGACGATATGTTTGGTTTTC+AGG - chr7_1:69831042-69831061 Msa1034360:CDS 35.0%
!!! GACGATATGTTTGGTTTTCA+GGG - chr7_1:69831043-69831062 Msa1034360:CDS 35.0%
! TTTTCATCCCAATGTGTTGA+CGG + chr7_1:69831071-69831090 None:intergenic 35.0%
TCCAAAGGCTGTAAGATGAT+TGG - chr7_1:69825078-69825097 Msa1034360:intron 40.0%
ACCAATCATCTTACAGCCTT+TGG + chr7_1:69825082-69825101 None:intergenic 40.0%
!! TGTCGGTGTTGTTTCTATGT+TGG - chr7_1:69825368-69825387 Msa1034360:CDS 40.0%
AATGTTCATGCTACTGAGGT+TGG - chr7_1:69825400-69825419 Msa1034360:CDS 40.0%
! GTGAAGGTTTGTTTAGGCAA+GGG + chr7_1:69825859-69825878 None:intergenic 40.0%
! AGTGAAGGTTTGTTTAGGCA+AGG + chr7_1:69825860-69825879 None:intergenic 40.0%
! CAGCAAGTGAAGGTTTGTTT+AGG + chr7_1:69825865-69825884 None:intergenic 40.0%
CATAGTAAAGCAGCAAGTGA+AGG + chr7_1:69825875-69825894 None:intergenic 40.0%
!! CTTCACTTGCTGCTTTACTA+TGG - chr7_1:69825873-69825892 Msa1034360:CDS 40.0%
GCTGTCAAAATACTTGCATG+TGG - chr7_1:69825898-69825917 Msa1034360:CDS 40.0%
TTTATTGTATGTGACCCTGC+AGG - chr7_1:69826132-69826151 Msa1034360:intron 40.0%
TTCATCTATCTTGACCTGCA+GGG + chr7_1:69826149-69826168 None:intergenic 40.0%
ATTCATCTATCTTGACCTGC+AGG + chr7_1:69826150-69826169 None:intergenic 40.0%
ATATACCAGACCTTGTACTC+TGG + chr7_1:69826253-69826272 None:intergenic 40.0%
!! AAAAGCATCTAGTCTAAGGG+AGG - chr7_1:69826429-69826448 Msa1034360:intron 40.0%
TTTAGTCCTTAATGCGCTGT+TGG - chr7_1:69826856-69826875 Msa1034360:CDS 40.0%
CTACAAATCCCCAACAATCT+AGG + chr7_1:69826940-69826959 None:intergenic 40.0%
AGATTGTTGGGGATTTGTAG+TGG - chr7_1:69826940-69826959 Msa1034360:intron 40.0%
! ATCTCATTTAGTTTCGGGCT+TGG - chr7_1:69827008-69827027 Msa1034360:intron 40.0%
CCTCAAAGATTGCATATGAG+TGG + chr7_1:69827138-69827157 None:intergenic 40.0%
CCACTCATATGCAATCTTTG+AGG - chr7_1:69827135-69827154 Msa1034360:intron 40.0%
TTCAGATAAGCGCAAAGAGA+TGG - chr7_1:69827445-69827464 Msa1034360:intron 40.0%
! GATTTTCTCTCCTCTTCTCA+AGG + chr7_1:69827609-69827628 None:intergenic 40.0%
TTTGAACTTAACAGCTAGCG+TGG + chr7_1:69828152-69828171 None:intergenic 40.0%
GTCACTGATACAGAATCTAC+AGG + chr7_1:69828191-69828210 None:intergenic 40.0%
TCAGAAACTTCACTTCAGAC+TGG + chr7_1:69828367-69828386 None:intergenic 40.0%
AGAAGGGATAGTAATCCCTA+AGG + chr7_1:69828558-69828577 None:intergenic 40.0%
ATGGATAGCATGTCTGAATG+AGG - chr7_1:69829013-69829032 Msa1034360:intron 40.0%
GATAAAGATCCACTCTGAAC+AGG + chr7_1:69829047-69829066 None:intergenic 40.0%
! TCATTGATGGTCTGTAATGG+AGG + chr7_1:69829113-69829132 None:intergenic 40.0%
ATTGAACTTTAATCGGGCTG+TGG - chr7_1:69829133-69829152 Msa1034360:intron 40.0%
TGTTAAAACCTCATGGCTTG+AGG - chr7_1:69829612-69829631 Msa1034360:intron 40.0%
ACGTAGTGGCAGAAATCATA+AGG + chr7_1:69829894-69829913 None:intergenic 40.0%
ACACAATAAAGTCGACGTAG+TGG + chr7_1:69829908-69829927 None:intergenic 40.0%
! TTGATTATGCTGCTTCTCGT+AGG - chr7_1:69830042-69830061 Msa1034360:CDS 40.0%
AAAGAGACGACAAAAGGAGA+TGG - chr7_1:69830103-69830122 Msa1034360:CDS 40.0%
GACGACTTGAGTGCAAATTT+AGG - chr7_1:69830149-69830168 Msa1034360:intron 40.0%
AAAGAGACGACAAAAGGAGA+TGG - chr7_1:69830103-69830122 Msa1034360:CDS 40.0%
TAAGAATCGACGAAGACTTG+AGG - chr7_1:69830252-69830271 Msa1034360:intron 40.0%
AAGAATCGACGAAGACTTGA+GGG - chr7_1:69830253-69830272 Msa1034360:intron 40.0%
GCAAAGTTAGGTCCTCTTTA+TGG - chr7_1:69830275-69830294 Msa1034360:intron 40.0%
! GGCTTTTGGTATCCATAAAG+AGG + chr7_1:69830290-69830309 None:intergenic 40.0%
! GGCTTATAAGCTTTATGAGG+AGG - chr7_1:69830331-69830350 Msa1034360:intron 40.0%
TGAGGAGGATTGTAAGTCTA+AGG - chr7_1:69830346-69830365 Msa1034360:intron 40.0%
GAGGAGGATTGTAAGTCTAA+GGG - chr7_1:69830347-69830366 Msa1034360:intron 40.0%
CATCTCACGATACTTAGAGA+TGG + chr7_1:69830381-69830400 None:intergenic 40.0%
! CATCTCTAAGTATCGTGAGA+TGG - chr7_1:69830379-69830398 Msa1034360:intron 40.0%
GGGATTTAAGAAAGCAATGG+AGG - chr7_1:69830400-69830419 Msa1034360:intron 40.0%
ACATTGAGAACCACTTCAAG+GGG - chr7_1:69830498-69830517 Msa1034360:intron 40.0%
TCAAAATCATCCCCTTGAAG+TGG + chr7_1:69830511-69830530 None:intergenic 40.0%
!!! GGGATGATTTTGAAGTTTCC+TGG - chr7_1:69830518-69830537 Msa1034360:intron 40.0%
ATGAGCCTCCATATTCAAAG+AGG - chr7_1:69830606-69830625 Msa1034360:intron 40.0%
TGAGCCTCCATATTCAAAGA+GGG - chr7_1:69830607-69830626 Msa1034360:intron 40.0%
! GCAATTGCAATGCGTTTTTG+TGG + chr7_1:69831104-69831123 None:intergenic 40.0%
! GCACAAAGTCGTGTTTTCTA+CGG - chr7_1:69831122-69831141 Msa1034360:CDS 40.0%
CAAATTCGTCGGGTGGAAAT+AGG + chr7_1:69824848-69824867 None:intergenic 45.0%
TGAACTGCGTCAAATTCGTC+GGG + chr7_1:69824858-69824877 None:intergenic 45.0%
GTGAACTGCGTCAAATTCGT+CGG + chr7_1:69824859-69824878 None:intergenic 45.0%
CGAATTTGACGCAGTTCACA+AGG - chr7_1:69824860-69824879 Msa1034360:CDS 45.0%
CACAAGGCCGTTGAAGATAA+CGG - chr7_1:69824876-69824895 Msa1034360:CDS 45.0%
! TTGAGCGCCGTTATCTTCAA+CGG + chr7_1:69824886-69824905 None:intergenic 45.0%
!! GGTTTTGATCTTTCCCGCAA+CGG - chr7_1:69824915-69824934 Msa1034360:intron 45.0%
! ATAATCGTTTTCGCCGTTGC+GGG + chr7_1:69824931-69824950 None:intergenic 45.0%
! GATAATCGTTTTCGCCGTTG+CGG + chr7_1:69824932-69824951 None:intergenic 45.0%
GTTTGTTTAGGCAAGGGAAG+AGG + chr7_1:69825853-69825872 None:intergenic 45.0%
!! CACTTGCTGCTTTACTATGG+AGG - chr7_1:69825876-69825895 Msa1034360:CDS 45.0%
ACTTGCATGTGGGTTTGATG+CGG - chr7_1:69825909-69825928 Msa1034360:CDS 45.0%
GAGAGCAAAAAAAGGAACGG+AGG + chr7_1:69826102-69826121 None:intergenic 45.0%
!!! TGTTTTGGCTCCAGAGTACA+AGG - chr7_1:69826240-69826259 Msa1034360:intron 45.0%
AGTCTAAGGGAGGAAGATTC+TGG - chr7_1:69826439-69826458 Msa1034360:intron 45.0%
TTGTAGCCAACAGCGCATTA+AGG + chr7_1:69826865-69826884 None:intergenic 45.0%
ACCATGTTATGTCTGGCAGT+GGG - chr7_1:69827205-69827224 Msa1034360:intron 45.0%
GGGTTAAAGATCTGTGTGAC+TGG - chr7_1:69827336-69827355 Msa1034360:intron 45.0%
CGTCAATATAAGCGGAGGTA+TGG + chr7_1:69827933-69827952 None:intergenic 45.0%
ATGCTTTGACGCATGCTACT+TGG - chr7_1:69828270-69828289 Msa1034360:intron 45.0%
! AGTGATCCTTTTGCGAAGAC+AGG - chr7_1:69828456-69828475 Msa1034360:intron 45.0%
TCTTCTACTGCACTGCCTTA+GGG - chr7_1:69828540-69828559 Msa1034360:intron 45.0%
CAGTCAGCCAAGCTTATCTA+TGG + chr7_1:69828961-69828980 None:intergenic 45.0%
CATAGATAAGCTTGGCTGAC+TGG - chr7_1:69828959-69828978 Msa1034360:intron 45.0%
AATATGGTGCGTAAAGGTGG+AGG - chr7_1:69829251-69829270 Msa1034360:intron 45.0%
! GTGTTTCTACAGGGAAAGGA+AGG - chr7_1:69829549-69829568 Msa1034360:intron 45.0%
ATCACAATCCTCAAGCCATG+AGG + chr7_1:69829623-69829642 None:intergenic 45.0%
CATTGTACCGTCGTAGAAGA+GGG + chr7_1:69829663-69829682 None:intergenic 45.0%
TGGTTCAGGTCAGAAAACGT+TGG - chr7_1:69829935-69829954 Msa1034360:intron 45.0%
TTCAGGTCAGAAAACGTTGG+TGG - chr7_1:69829938-69829957 Msa1034360:intron 45.0%
!! TGTTGACTTAGCACAAGTGC+TGG - chr7_1:69830019-69830038 Msa1034360:intron 45.0%
ACGACAAAAGGAGATGGAGA+TGG - chr7_1:69830109-69830128 Msa1034360:CDS 45.0%
GCAAATTTAGGTCCTCGTGA+TGG - chr7_1:69830161-69830180 Msa1034360:intron 45.0%
! CAATCTCAAAGCGAGGCTTT+TGG + chr7_1:69830190-69830209 None:intergenic 45.0%
!! AAAGCCTCGCTTTGAGATTG+CGG - chr7_1:69830190-69830209 Msa1034360:intron 45.0%
AATTCCGCAATCTCAAAGCG+AGG + chr7_1:69830197-69830216 None:intergenic 45.0%
ACGACAAAAGGAGATGGAGA+CGG - chr7_1:69830109-69830128 Msa1034360:CDS 45.0%
GAAGACTTGAGGGCAAAGTT+AGG - chr7_1:69830263-69830282 Msa1034360:intron 45.0%
!! AAGAAAGCAATGGAGGCGTT+TGG - chr7_1:69830407-69830426 Msa1034360:intron 45.0%
! TCAGGATCAGTCTTATCACC+AGG + chr7_1:69830539-69830558 None:intergenic 45.0%
TGTGCCCTCTTTGAATATGG+AGG + chr7_1:69830614-69830633 None:intergenic 45.0%
CTCTGTGCCCTCTTTGAATA+TGG + chr7_1:69830617-69830636 None:intergenic 45.0%
! TATTCAAAGAGGGCACAGAG+TGG - chr7_1:69830617-69830636 Msa1034360:intron 45.0%
TAATCAACCCGAAGAACAGG+AGG - chr7_1:69830643-69830662 Msa1034360:intron 45.0%
! GTTTTCTACGGTCCTTCACT+TGG - chr7_1:69831134-69831153 Msa1034360:CDS 45.0%
AACGGCGCTCAAGTTCACAT+TGG - chr7_1:69824894-69824913 Msa1034360:intron 50.0%
!! TCATGCTACTGAGGTTGGTG+CGG - chr7_1:69825405-69825424 Msa1034360:CDS 50.0%
TGGAAGACGTGTCTGTGTCA+TGG + chr7_1:69825434-69825453 None:intergenic 50.0%
TGTTGCACTTTCGTCACGTG+AGG - chr7_1:69825551-69825570 Msa1034360:CDS 50.0%
GTTGCACTTTCGTCACGTGA+GGG - chr7_1:69825552-69825571 Msa1034360:CDS 50.0%
TTGCACTTTCGTCACGTGAG+GGG - chr7_1:69825553-69825572 Msa1034360:CDS 50.0%
TGGGTTTGATGCGGATCAGA+AGG - chr7_1:69825918-69825937 Msa1034360:CDS 50.0%
CACCATGTTATGTCTGGCAG+TGG - chr7_1:69827204-69827223 Msa1034360:intron 50.0%
! TTATGTCTGGCAGTGGGCTT+TGG - chr7_1:69827211-69827230 Msa1034360:intron 50.0%
! CTTTGACGCATGCTACTTGG+TGG - chr7_1:69828273-69828292 Msa1034360:intron 50.0%
AAGGCAGTGCAGTAGAAGAC+AGG + chr7_1:69828539-69828558 None:intergenic 50.0%
GTCTTCTACTGCACTGCCTT+AGG - chr7_1:69828539-69828558 Msa1034360:intron 50.0%
GACTGTTCTTACGCTCCTGA+AGG - chr7_1:69828714-69828733 Msa1034360:CDS 50.0%
GAATCCTACCCTGTTCAGAG+TGG - chr7_1:69829035-69829054 Msa1034360:intron 50.0%
AGATCCACTCTGAACAGGGT+AGG + chr7_1:69829042-69829061 None:intergenic 50.0%
AGCAAGTCCCTCTTCTACGA+CGG - chr7_1:69829653-69829672 Msa1034360:intron 50.0%
GCATTGTACCGTCGTAGAAG+AGG + chr7_1:69829664-69829683 None:intergenic 50.0%
! AGGTCAGAAAACGTTGGTGG+AGG - chr7_1:69829941-69829960 Msa1034360:intron 50.0%
! GGCTTTTGGTATCCATCACG+AGG + chr7_1:69830176-69830195 None:intergenic 50.0%
TTGTGCACCTCCTGTTCTTC+GGG + chr7_1:69830653-69830672 None:intergenic 50.0%
GTTGTGCACCTCCTGTTCTT+CGG + chr7_1:69830654-69830673 None:intergenic 50.0%
! AAGAACAGGAGGTGCACAAC+AGG - chr7_1:69830654-69830673 Msa1034360:intron 50.0%
TCAGGGAACCGTCAACACAT+TGG - chr7_1:69831060-69831079 Msa1034360:CDS 50.0%
CAGGGAACCGTCAACACATT+GGG - chr7_1:69831061-69831080 Msa1034360:CDS 50.0%
ACTGCGTCAAATTCGTCGGG+TGG + chr7_1:69824855-69824874 None:intergenic 55.0%
TGGCTCCAGAGTACAAGGTC+TGG - chr7_1:69826245-69826264 Msa1034360:intron 55.0%
GCCCACTGCCAGACATAACA+TGG + chr7_1:69827209-69827228 None:intergenic 55.0%
TGTGTGACTGGAATCCGAGC+AGG - chr7_1:69827348-69827367 Msa1034360:intron 55.0%
GCGCGTTTGCTTCGAGATTG+CGG - chr7_1:69830076-69830095 Msa1034360:CDS 55.0%
GGAGCTGACAGTGAAGCTGC+AGG + chr7_1:69827659-69827678 None:intergenic 60.0%
!! CGTTGGTGGAGGCATCCACT+AGG - chr7_1:69829952-69829971 Msa1034360:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 69824801 69831166 69824801 ID=Msa1034360;Name=Msa1034360
chr7_1 mRNA 69824801 69831166 69824801 ID=Msa1034360-mRNA-1;Parent=Msa1034360;Name=Msa1034360-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.37|0.22|0.77|1|1|9|0|652
chr7_1 exon 69830983 69831166 69830983 ID=Msa1034360-mRNA-1:exon:16579;Parent=Msa1034360-mRNA-1
chr7_1 exon 69830028 69830155 69830028 ID=Msa1034360-mRNA-1:exon:16578;Parent=Msa1034360-mRNA-1
chr7_1 exon 69829706 69829813 69829706 ID=Msa1034360-mRNA-1:exon:16577;Parent=Msa1034360-mRNA-1
chr7_1 exon 69828648 69828743 69828648 ID=Msa1034360-mRNA-1:exon:16576;Parent=Msa1034360-mRNA-1
chr7_1 exon 69827665 69827782 69827665 ID=Msa1034360-mRNA-1:exon:16575;Parent=Msa1034360-mRNA-1
chr7_1 exon 69826631 69826946 69826631 ID=Msa1034360-mRNA-1:exon:16574;Parent=Msa1034360-mRNA-1
chr7_1 exon 69826261 69826406 69826261 ID=Msa1034360-mRNA-1:exon:16573;Parent=Msa1034360-mRNA-1
chr7_1 exon 69825265 69826024 69825265 ID=Msa1034360-mRNA-1:exon:16572;Parent=Msa1034360-mRNA-1
chr7_1 exon 69824801 69824903 69824801 ID=Msa1034360-mRNA-1:exon:16571;Parent=Msa1034360-mRNA-1
chr7_1 CDS 69830983 69831166 69830983 ID=Msa1034360-mRNA-1:cds;Parent=Msa1034360-mRNA-1
chr7_1 CDS 69830028 69830155 69830028 ID=Msa1034360-mRNA-1:cds;Parent=Msa1034360-mRNA-1
chr7_1 CDS 69829706 69829813 69829706 ID=Msa1034360-mRNA-1:cds;Parent=Msa1034360-mRNA-1
chr7_1 CDS 69828648 69828743 69828648 ID=Msa1034360-mRNA-1:cds;Parent=Msa1034360-mRNA-1
chr7_1 CDS 69827665 69827782 69827665 ID=Msa1034360-mRNA-1:cds;Parent=Msa1034360-mRNA-1
chr7_1 CDS 69826631 69826946 69826631 ID=Msa1034360-mRNA-1:cds;Parent=Msa1034360-mRNA-1
chr7_1 CDS 69826261 69826406 69826261 ID=Msa1034360-mRNA-1:cds;Parent=Msa1034360-mRNA-1
chr7_1 CDS 69825265 69826024 69825265 ID=Msa1034360-mRNA-1:cds;Parent=Msa1034360-mRNA-1
chr7_1 CDS 69824801 69824903 69824801 ID=Msa1034360-mRNA-1:cds;Parent=Msa1034360-mRNA-1
Gene Sequence

>Msa1034360

ATGTCGGAGTTATTTAAAGGGTTAAACATGTTCATATCGCGACACCTATTTCCACCCGACGAATTTGACGCAGTTCACAAGGCCGTTGAAGATAACGGCGCTCAAGTTCACATTGGTTTTGATCTTTCCCGCAACGGCGAAAACGATTATCATATAATTTCTGGCCAGAAACACGTACATAGTTGTTATAAATGTGTTCTTCAATGTGCTAAAGAAGGAAGACCTCTTCCCTTGCCTAAACAAACCTTCACTTGCTGCTTTACTATGGAGGCTGTCAAAATACTTGCATGTGGGTTTGATGCGGATCAGAAGGTCAAGATAGATGAATTAATGATAGAAATGGGGGAAGCTCTACAGACTAAACCGTCATCAGATTTAAACTATGTCATCGTAAAAAATGTTTTGGCTCCAGAGTACAAGTGGGCTTTGGATGTCCTGAAGAAACCAATAGTTACTTATGAATGGTTAAAGCAATGCTCGGATGAGCATCAAGTTGTTTCTCAAGAGTCATATAAGTATCCTGTAGATTCTGTATCAGTGACTGTTGAGTTTAAACTAGTAATAATAACTAGGATTCAATTAGGCAAGAATTCGGGATTACATGCTTTGACGCATGCTACTTGGTGGTATTCAACATGTCTGAATGAGGAATCCTACCCTGTTCAGAGTGGATCTTTATCTTCAAATGTTCCATTATTTGTTAAAGAGGCAGATGCTGAAGCACCTCCATTACAGACCATCAATGAATTGAACTTTAATCGGGCTGTGGCCAATGATTCTGAATCTGATGAAAATGACCGGTATTTAGCAGATTGCAGAATATCACTTGTTGGTTTTGAAGCTTCTGAAATGGAGAAGCTAATTAATATGGTGCGTAAAGGTGGAGGCTCCCAATGCTTGTCTTTAAATGATAAGTTGACACACATAGTAATTGGGAATCCGACATATACGGAAAGGAAGGATGTAGTGAGAACTGTTATTTCTCTAGGTGTCTATTATGTTGTTAAAACCTCATGGCTTGAGGATTGTGATCGCGAAAAAAAGCAAGTCCCTCTTCTACGACGGTACAATGCATGTGATATTCTTTTTCCAAAAGGTCAGAAAACGTTGGTGGAGGCATCCACTAGGATAAAAAAGAAGAATCTAGAAAAGAAGGAATTGACAAAAGCTCATGTTGACTTAGCACAAGTGCTGGTTGATTATGCTGCTTCTCGTAGGCTAGCTCGCACGCGCGTTTGCTTCGAGATTGCGGAATTAAAGAGACGACAAAAGGAGATGGAGATGGAAAATGTAAGAATCAACGACGACTTGAGTGCAAATTTAGGTCCTCGTGATGGATACCAAAAGCCTCGCTTTGAGATTGCGGAATTAAAGAGACGACAAAAGGAGATGGAGACGGAATATGTAAGAATCGACGAAGACTTGAGGGCAAAGTTAGGTCCTCTTTATGGATACCAAAAGCCTAAAAATGAGTTAAAGATTGAGGCTTATAAGCTTTATGAGGAGGATTGTAAGTCTAAGGGAATAGTTGCCATCTCTAAGTATCGTGAGATGGGATTTAAGAAAGCAATGGAGGCGTTTGGTGACATTGCGAAAGAGAGTTGTCGTCGTAACTTTGTTACGTACTTGAATGATCCAGTTAGAAAAGAAAACATTGAGAACCACTTCAAGGGGATGATTTTGAAGTTTCCTGGTGATAAGACTGATCCTGATGTTGCAAAATTTGTTTATAAGTTTGCGTGTGAAGTGTCTGATTCTGATGAGCCTCCATATTCAAAGAGGGCACAGAGTGGTAATAATCAACCCGAAGAACAGGAGGTGCACAACAGGACTGCTAAGAAAATGAAATATGAACTGGAACCGTCAACACATTGGGATGAAAATCTGAATGATCCACAAAAACGCATTGCAATTGCACAAAGTCGTGTTTTCTACGGTCCTTCACTTGGACAACAGTGA

Protein sequence

>Msa1034360

MSELFKGLNMFISRHLFPPDEFDAVHKAVEDNGAQVHIGFDLSRNGENDYHIISGQKHVHSCYKCVLQCAKEGRPLPLPKQTFTCCFTMEAVKILACGFDADQKVKIDELMIEMGEALQTKPSSDLNYVIVKNVLAPEYKWALDVLKKPIVTYEWLKQCSDEHQVVSQESYKYPVDSVSVTVEFKLVIITRIQLGKNSGLHALTHATWWYSTCLNEESYPVQSGSLSSNVPLFVKEADAEAPPLQTINELNFNRAVANDSESDENDRYLADCRISLVGFEASEMEKLINMVRKGGGSQCLSLNDKLTHIVIGNPTYTERKDVVRTVISLGVYYVVKTSWLEDCDREKKQVPLLRRYNACDILFPKGQKTLVEASTRIKKKNLEKKELTKAHVDLAQVLVDYAASRRLARTRVCFEIAELKRRQKEMEMENVRINDDLSANLGPRDGYQKPRFEIAELKRRQKEMETEYVRIDEDLRAKLGPLYGYQKPKNELKIEAYKLYEEDCKSKGIVAISKYREMGFKKAMEAFGDIAKESCRRNFVTYLNDPVRKENIENHFKGMILKFPGDKTDPDVAKFVYKFACEVSDSDEPPYSKRAQSGNNQPEEQEVHNRTAKKMKYELEPSTHWDENLNDPQKRIAIAQSRVFYGPSLGQQ*