AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1075010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1075010 MtrunA17_Chr7g0258181 75.549 319 20 4 1 261 1 319 2.88e-167 465
Msa1075010 MtrunA17_Chr1g0174271 39.084 371 103 11 4 257 6 370 3.69e-57 187
Msa1075010 MtrunA17_Chr4g0032951 38.783 263 95 7 60 261 174 431 2.78e-42 149
Msa1075010 MtrunA17_Chr2g0329041 40.000 255 94 8 62 261 157 407 2.95e-39 140
Msa1075010 MtrunA17_Chr4g0014771 69.620 79 24 0 179 257 112 190 6.16e-34 121
Msa1075010 MtrunA17_Chr3g0087771 61.538 91 35 0 167 257 304 394 2.41e-33 125
Msa1075010 MtrunA17_Chr8g0351881 60.440 91 36 0 167 257 298 388 1.23e-32 122
Msa1075010 MtrunA17_Chr1g0213791 56.522 92 38 1 170 261 252 341 1.66e-27 108
Msa1075010 MtrunA17_Chr1g0152131 52.113 71 34 0 185 255 260 330 3.79e-16 77.4
Msa1075010 MtrunA17_Chr4g0074161 54.412 68 30 1 185 252 206 272 4.34e-16 77.4
Msa1075010 MtrunA17_Chr1g0190731 50.667 75 36 1 178 252 186 259 8.52e-16 75.9
Msa1075010 MtrunA17_Chr5g0421111 50.000 74 37 0 185 258 365 438 1.55e-15 75.9
Msa1075010 MtrunA17_Chr3g0131771 53.731 67 31 0 185 251 147 213 2.71e-15 74.3
Msa1075010 MtrunA17_Chr7g0234761 48.649 74 38 0 185 258 317 390 4.26e-15 74.7
Msa1075010 MtrunA17_Chr3g0144641 50.000 74 37 0 185 258 191 264 7.71e-15 73.6
Msa1075010 MtrunA17_Chr8g0365941 50.725 69 34 0 185 253 305 373 1.57e-14 72.8
Msa1075010 MtrunA17_Chr8g0339091 45.946 74 40 0 185 258 291 364 2.07e-14 72.4
Msa1075010 MtrunA17_Chr4g0035101 45.679 81 42 1 178 258 138 216 6.64e-14 70.5
Msa1075010 MtrunA17_Chr8g0385911 49.275 69 35 0 185 253 145 213 8.64e-14 70.1
Msa1075010 MtrunA17_Chr8g0363921 47.761 67 35 0 185 251 151 217 5.45e-13 67.4
Msa1075010 MtrunA17_Chr7g0258161 41.892 74 43 0 185 258 173 246 9.23e-12 64.3
Msa1075010 MtrunA17_Chr5g0415291 46.269 67 36 0 185 251 112 178 9.59e-12 63.2
Msa1075010 MtrunA17_Chr1g0152651 53.846 65 29 1 186 250 275 338 2.52e-11 63.2
Msa1075010 MtrunA17_Chr6g0484271 44.776 67 37 0 185 251 155 221 3.12e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1075010 AT2G42280.1 69.474 95 29 0 167 261 261 355 1.19e-39 141
Msa1075010 AT1G51140.1 67.816 87 26 1 171 257 292 376 4.15e-35 129
Msa1075010 AT2G42280.3 74.074 81 21 0 167 247 261 341 1.08e-33 125
Msa1075010 AT2G43140.1 60.870 92 35 1 167 257 115 206 1.26e-32 119
Msa1075010 AT1G35460.1 61.176 85 33 0 177 261 173 257 1.63e-32 120
Msa1075010 AT2G43140.2 60.870 92 35 1 167 257 212 303 3.78e-32 120
Msa1075010 AT4G09180.1 59.341 91 35 1 171 261 172 260 2.22e-30 114
Msa1075010 AT1G05805.1 59.341 91 36 1 168 257 265 355 3.94e-30 116
Msa1075010 AT1G35460.2 76.596 47 11 0 177 223 173 219 2.58e-18 81.6
Msa1075010 AT2G24260.2 51.282 78 37 1 175 252 25 101 1.70e-16 77.0
Msa1075010 AT5G58010.1 54.412 68 30 1 185 252 99 165 3.60e-16 77.0
Msa1075010 AT2G24260.1 51.282 78 37 1 175 252 128 204 4.77e-16 77.0
Msa1075010 AT4G30980.1 54.412 68 30 1 185 252 130 196 1.44e-15 75.5
Msa1075010 AT4G30980.2 54.412 68 30 1 185 252 178 244 1.80e-15 75.5
Msa1075010 AT1G10120.2 52.113 71 34 0 185 255 206 276 3.82e-15 74.7
Msa1075010 AT1G10120.1 52.113 71 34 0 185 255 206 276 3.82e-15 74.7
Msa1075010 AT4G34530.1 48.649 74 38 0 185 258 172 245 4.79e-15 73.9
Msa1075010 AT1G68920.3 49.296 71 36 0 185 255 302 372 7.77e-15 74.3
Msa1075010 AT5G50915.1 53.731 67 31 0 185 251 136 202 8.26e-15 72.8
Msa1075010 AT5G50915.2 53.731 67 31 0 185 251 136 202 8.26e-15 72.8
Msa1075010 AT1G68920.1 49.296 71 36 0 185 255 303 373 8.63e-15 73.9
Msa1075010 AT1G68920.4 49.296 71 36 0 185 255 303 373 8.63e-15 73.9
Msa1075010 AT1G68920.2 49.296 71 36 0 185 255 303 373 8.63e-15 73.9
Msa1075010 AT5G50915.3 53.731 67 31 0 185 251 136 202 9.38e-15 72.4
Msa1075010 AT5G50915.4 53.731 67 31 0 185 251 136 202 9.38e-15 72.4
Msa1075010 AT3G07340.1 47.297 74 39 0 185 258 258 331 2.59e-14 72.4
Msa1075010 AT3G07340.2 47.297 74 39 0 185 258 258 331 2.98e-14 72.4
Msa1075010 AT1G26260.4 52.239 67 32 0 185 251 223 289 4.13e-14 71.6
Msa1075010 AT1G26260.1 52.239 67 32 0 185 251 223 289 4.13e-14 71.6
Msa1075010 AT1G26260.6 52.239 67 32 0 185 251 223 289 4.13e-14 71.6
Msa1075010 AT1G26260.2 52.239 67 32 0 185 251 223 289 4.13e-14 71.6
Msa1075010 AT1G26260.5 52.239 67 32 0 185 251 201 267 4.59e-14 71.6
Msa1075010 AT1G26260.3 52.239 67 32 0 185 251 172 238 5.26e-14 71.2
Msa1075010 AT1G25330.1 47.761 67 35 0 185 251 104 170 8.31e-14 69.3
Msa1075010 AT5G48560.2 49.254 67 34 0 185 251 301 367 2.42e-13 69.7
Msa1075010 AT5G48560.1 49.254 67 34 0 185 251 301 367 2.45e-13 69.7
Msa1075010 AT3G23690.1 45.946 74 40 0 185 258 191 264 3.06e-13 69.3
Msa1075010 AT4G36540.1 44.156 77 41 1 175 251 133 207 5.12e-13 68.2
Msa1075010 AT4G36540.2 44.156 77 41 1 175 251 133 207 5.14e-13 68.2
Msa1075010 AT1G18400.2 47.761 67 35 0 185 251 145 211 1.81e-12 65.9
Msa1075010 AT1G59640.1 47.761 67 35 0 185 251 136 202 2.39e-12 65.9
Msa1075010 AT1G18400.1 47.761 67 35 0 185 251 145 211 2.90e-12 65.5
Msa1075010 AT3G57800.2 43.243 74 42 0 185 258 204 277 2.99e-12 66.2
Msa1075010 AT2G18300.2 46.377 69 37 0 185 253 185 253 2.99e-12 66.2
Msa1075010 AT2G18300.1 46.377 69 37 0 185 253 185 253 3.13e-12 65.9
Msa1075010 AT2G42300.1 43.243 74 42 0 185 258 185 258 3.25e-12 65.9
Msa1075010 AT2G18300.3 46.377 69 37 0 185 253 185 253 3.57e-12 65.9
Msa1075010 AT1G73830.2 44.776 67 37 0 185 251 147 213 4.08e-12 65.1
Msa1075010 AT1G73830.1 44.776 67 37 0 185 251 147 213 4.50e-12 64.7
Msa1075010 AT2G42300.4 43.243 74 42 0 185 258 185 258 5.03e-12 64.7
Msa1075010 AT1G59640.2 47.761 67 35 0 185 251 136 202 8.21e-12 64.7
Msa1075010 AT5G62610.2 44.776 67 37 0 185 251 153 219 2.19e-11 63.2
Msa1075010 AT5G62610.1 44.776 67 37 0 185 251 153 219 2.19e-11 63.2
Msa1075010 AT2G14760.1 53.846 65 29 1 186 250 238 301 3.10e-11 63.2

Find 50 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACGAAGCAACCTTGAATT+TGG 0.214893 7_2:-73111052 None:intergenic
CTCAAGGAAGAAGGACTTCT+TGG 0.270896 7_2:-73112221 None:intergenic
AACATATTGAACAATCAAAT+TGG 0.290694 7_2:+73112191 Msa1075010:CDS
ACCCTTTCGGCAAGGCTTCT+AGG 0.305032 7_2:-73112618 None:intergenic
CCGAGTTCTTCTTACCCTTT+CGG 0.326997 7_2:-73112631 None:intergenic
ATGCTGCTCGGAACAGAATC+TGG 0.330247 7_2:-73112567 None:intergenic
AATGTTTATTGTGGAGAATT+TGG 0.338878 7_2:+73112536 Msa1075010:CDS
AATGAGGATGCTCAATATTA+TGG 0.342968 7_2:+73112323 Msa1075010:CDS
ATTCTGACCTTATCAATGTT+TGG 0.345820 7_2:-73112690 None:intergenic
GAAGGTTGTGCTACAAATTC+TGG 0.353997 7_2:+73111097 Msa1075010:CDS
AACAACAACATCATCTCCTT+TGG 0.393746 7_2:+73111313 Msa1075010:CDS
TCCTAGAAGCCTTGCCGAAA+GGG 0.399735 7_2:+73112617 Msa1075010:CDS
AACATCATCTCCTTTGGAAA+TGG 0.414195 7_2:+73111319 Msa1075010:CDS
CTCTTTGCTCTGATGCTGCT+CGG 0.438402 7_2:-73112579 None:intergenic
ACCACTCTGTCTTAAAAGAT+TGG 0.442108 7_2:-73111269 None:intergenic
AACAAAACCAACCAAATTCA+AGG 0.457834 7_2:+73111041 Msa1075010:CDS
AAAGGAGATGATGTTGTTGT+TGG 0.459546 7_2:-73111311 None:intergenic
TCGGAACAGAATCTGGAAAC+TGG 0.461159 7_2:-73112560 None:intergenic
GGTTGTTCCAAACATTGATA+AGG 0.462084 7_2:+73112683 Msa1075010:CDS
AGACAGAGTGGTTCCCATGC+TGG 0.479729 7_2:+73111280 Msa1075010:CDS
AAAGGTGTTGAAAACTATGA+TGG 0.487777 7_2:+73112131 Msa1075010:CDS
CACATCAGAAATGTTAGACT+TGG 0.499859 7_2:+73112809 Msa1075010:CDS
AAGACACATGAATTCTCAGC+AGG 0.502231 7_2:+73111213 Msa1075010:CDS
TTCTCAGCAGGGTTATAGAA+TGG 0.503073 7_2:+73111225 Msa1075010:CDS
ATCATCAGAAATGTTTATTG+TGG 0.507405 7_2:+73112527 Msa1075010:intron
GAAGCAACCTTGAATTTGGT+TGG 0.517186 7_2:-73111048 None:intergenic
GATAACATTCTCAAGGAAGA+AGG 0.538937 7_2:-73112230 None:intergenic
ATCCTAGAAGCCTTGCCGAA+AGG 0.543719 7_2:+73112616 Msa1075010:CDS
AACTCTAAAACGAGGAGTGA+TGG 0.547308 7_2:+73112257 Msa1075010:CDS
TTCTTCTTACCCTTTCGGCA+AGG 0.550067 7_2:-73112626 None:intergenic
TCAAGTTTCAAACAAGCTGA+AGG 0.555684 7_2:+73111079 Msa1075010:CDS
CCGAAAGGGTAAGAAGAACT+CGG 0.565752 7_2:+73112631 Msa1075010:CDS
CTCCTTGTCTTCGATCATCA+CGG 0.577461 7_2:-73112295 None:intergenic
AAAACGAGGAGTGATGGCAT+TGG 0.578334 7_2:+73112263 Msa1075010:CDS
GCAGGGTATGAATCTATGAA+AGG 0.606763 7_2:+73112113 Msa1075010:intron
AAGGTGTTGAAAACTATGAT+GGG 0.612325 7_2:+73112132 Msa1075010:CDS
GTTATGTGATAACATTCTCA+AGG 0.612399 7_2:-73112237 None:intergenic
TACTACAATACCATTTCCAA+AGG 0.613692 7_2:-73111329 None:intergenic
AGCAGCATCAGAGCAAAGAG+AGG 0.624459 7_2:+73112582 Msa1075010:CDS
ACGAATGAGAAAATTGCAAG+AGG 0.630200 7_2:+73112662 Msa1075010:CDS
TATAGAATGGATCAACACAA+AGG 0.657311 7_2:+73111238 Msa1075010:CDS
AGCCGTGATGATCGAAGACA+AGG 0.662100 7_2:+73112293 Msa1075010:CDS
GTTGGAGAAATGACCAGCAT+GGG 0.675608 7_2:-73111293 None:intergenic
TGTTGGAGAAATGACCAGCA+TGG 0.677077 7_2:-73111294 None:intergenic
CGTGATGATCGAAGACAAGG+AGG 0.691311 7_2:+73112296 Msa1075010:CDS
AGACACATGAATTCTCAGCA+GGG 0.696388 7_2:+73111214 Msa1075010:CDS
GATGGGGTGAATGACAGTGA+TGG 0.701721 7_2:+73112149 Msa1075010:CDS
AAGACAAGGAGGTAGCAATG+AGG 0.720936 7_2:+73112307 Msa1075010:CDS
AGGTGTTGAAAACTATGATG+GGG 0.756832 7_2:+73112133 Msa1075010:CDS
TATCACATAACTCTAAAACG+AGG 0.781502 7_2:+73112249 Msa1075010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAACATAACTTTTTTT+AGG + chr7_2:73111629-73111648 Msa1075010:intron 10.0%
!!! ATTAAAACATAACTTTTTTT+AGG + chr7_2:73111629-73111648 Msa1075010:intron 10.0%
!! TGCTAAATCTAAAAAAAAAA+TGG + chr7_2:73111662-73111681 Msa1075010:intron 15.0%
!! GCTAAATCTAAAAAAAAAAT+GGG + chr7_2:73111663-73111682 Msa1075010:intron 15.0%
!! TTATCATTAAGAATAGAATT+CGG + chr7_2:73111704-73111723 Msa1075010:intron 15.0%
!! AAAAAAGTTATTTATGTACA+AGG + chr7_2:73111871-73111890 Msa1075010:intron 15.0%
!! AAAAAGTTATTTATGTACAA+GGG + chr7_2:73111872-73111891 Msa1075010:intron 15.0%
!! AAAACATAATTGTCTTAAAA+GGG - chr7_2:73112744-73112763 None:intergenic 15.0%
!! AAAAACATAATTGTCTTAAA+AGG - chr7_2:73112745-73112764 None:intergenic 15.0%
!!! AGTTAAACATTGTTTAATTT+TGG + chr7_2:73112775-73112794 Msa1075010:intron 15.0%
!! ATTAAAATATATATTAGTGC+AGG - chr7_2:73112950-73112969 None:intergenic 15.0%
!! TGCTAAATCTAAAAAAAAAA+TGG + chr7_2:73111662-73111681 Msa1075010:intron 15.0%
!! GCTAAATCTAAAAAAAAAAT+GGG + chr7_2:73111663-73111682 Msa1075010:intron 15.0%
!! TTATCATTAAGAATAGAATT+CGG + chr7_2:73111704-73111723 Msa1075010:intron 15.0%
!! AAAAAAGTTATTTATGTACA+AGG + chr7_2:73111871-73111890 Msa1075010:intron 15.0%
!! AAAAAGTTATTTATGTACAA+GGG + chr7_2:73111872-73111891 Msa1075010:intron 15.0%
!! AAAACATAATTGTCTTAAAA+GGG - chr7_2:73112744-73112763 None:intergenic 15.0%
!! AAAAACATAATTGTCTTAAA+AGG - chr7_2:73112745-73112764 None:intergenic 15.0%
!!! AGTTAAACATTGTTTAATTT+TGG + chr7_2:73112775-73112794 Msa1075010:intron 15.0%
!! ATTAAAATATATATTAGTGC+AGG - chr7_2:73112950-73112969 None:intergenic 15.0%
!! CTTTATGATTAAAAGGATTA+TGG - chr7_2:73111159-73111178 None:intergenic 20.0%
!!! CATAATCCTTTTAATCATAA+AGG + chr7_2:73111157-73111176 Msa1075010:intron 20.0%
!!! TTCTATTTTAAGAAAGTGTA+GGG - chr7_2:73111461-73111480 None:intergenic 20.0%
!!! ATTCTATTTTAAGAAAGTGT+AGG - chr7_2:73111462-73111481 None:intergenic 20.0%
!!! ATTTAGTGTTAAATGACTTT+TGG + chr7_2:73111604-73111623 Msa1075010:intron 20.0%
!! AACAATTTCTGTCTAATTTA+TGG + chr7_2:73111925-73111944 Msa1075010:intron 20.0%
!! AACATATTGAACAATCAAAT+TGG + chr7_2:73112191-73112210 Msa1075010:CDS 20.0%
!! AAACATAATTGTCTTAAAAG+GGG - chr7_2:73112743-73112762 None:intergenic 20.0%
!! AGATCTTCAAAAACAATTAA+AGG + chr7_2:73112848-73112867 Msa1075010:CDS 20.0%
!! CTTTATGATTAAAAGGATTA+TGG - chr7_2:73111159-73111178 None:intergenic 20.0%
!!! CATAATCCTTTTAATCATAA+AGG + chr7_2:73111157-73111176 Msa1075010:intron 20.0%
!!! TTCTATTTTAAGAAAGTGTA+GGG - chr7_2:73111461-73111480 None:intergenic 20.0%
!!! ATTCTATTTTAAGAAAGTGT+AGG - chr7_2:73111462-73111481 None:intergenic 20.0%
!!! ATTTAGTGTTAAATGACTTT+TGG + chr7_2:73111604-73111623 Msa1075010:intron 20.0%
!! AACAATTTCTGTCTAATTTA+TGG + chr7_2:73111925-73111944 Msa1075010:intron 20.0%
!! AACATATTGAACAATCAAAT+TGG + chr7_2:73112191-73112210 Msa1075010:CDS 20.0%
!! AAACATAATTGTCTTAAAAG+GGG - chr7_2:73112743-73112762 None:intergenic 20.0%
!! AGATCTTCAAAAACAATTAA+AGG + chr7_2:73112848-73112867 Msa1075010:CDS 20.0%
! TTGTCACCTTTATGATTAAA+AGG - chr7_2:73111166-73111185 None:intergenic 25.0%
!! TTTCTTCTAGACAACTTTTT+AGG + chr7_2:73111407-73111426 Msa1075010:intron 25.0%
!!! GCAATTTTTTGTGAATATAG+TGG + chr7_2:73111522-73111541 Msa1075010:intron 25.0%
! ACTAAAATTGTATCTTGTGT+TGG - chr7_2:73111564-73111583 None:intergenic 25.0%
! TGTATTTCATTGTAGTTACA+TGG + chr7_2:73111791-73111810 Msa1075010:intron 25.0%
! TGCATATAAATGTAAATTGC+AGG + chr7_2:73112095-73112114 Msa1075010:intron 25.0%
! GCATATAAATGTAAATTGCA+GGG + chr7_2:73112096-73112115 Msa1075010:intron 25.0%
!! AACATTTCTGATGATTTTCT+TGG - chr7_2:73112522-73112541 None:intergenic 25.0%
! ATCATCAGAAATGTTTATTG+TGG + chr7_2:73112527-73112546 Msa1075010:intron 25.0%
! AATGTTTATTGTGGAGAATT+TGG + chr7_2:73112536-73112555 Msa1075010:CDS 25.0%
! AACATAATTGTCTTAAAAGG+GGG - chr7_2:73112742-73112761 None:intergenic 25.0%
! TTGTCACCTTTATGATTAAA+AGG - chr7_2:73111166-73111185 None:intergenic 25.0%
!! TTTCTTCTAGACAACTTTTT+AGG + chr7_2:73111407-73111426 Msa1075010:intron 25.0%
!!! GCAATTTTTTGTGAATATAG+TGG + chr7_2:73111522-73111541 Msa1075010:intron 25.0%
! ACTAAAATTGTATCTTGTGT+TGG - chr7_2:73111564-73111583 None:intergenic 25.0%
! TGTATTTCATTGTAGTTACA+TGG + chr7_2:73111791-73111810 Msa1075010:intron 25.0%
! TGCATATAAATGTAAATTGC+AGG + chr7_2:73112095-73112114 Msa1075010:intron 25.0%
! GCATATAAATGTAAATTGCA+GGG + chr7_2:73112096-73112115 Msa1075010:intron 25.0%
!! AACATTTCTGATGATTTTCT+TGG - chr7_2:73112522-73112541 None:intergenic 25.0%
! ATCATCAGAAATGTTTATTG+TGG + chr7_2:73112527-73112546 Msa1075010:intron 25.0%
! AATGTTTATTGTGGAGAATT+TGG + chr7_2:73112536-73112555 Msa1075010:CDS 25.0%
! AACATAATTGTCTTAAAAGG+GGG - chr7_2:73112742-73112761 None:intergenic 25.0%
!!! TTGAATTTGGTTGGTTTTGT+TGG - chr7_2:73111042-73111061 None:intergenic 30.0%
AACAAAACCAACCAAATTCA+AGG + chr7_2:73111041-73111060 Msa1075010:CDS 30.0%
! ATCTACCTTTAGAGAATTCA+TGG + chr7_2:73111132-73111151 Msa1075010:intron 30.0%
TATAGAATGGATCAACACAA+AGG + chr7_2:73111238-73111257 Msa1075010:CDS 30.0%
TACTACAATACCATTTCCAA+AGG - chr7_2:73111332-73111351 None:intergenic 30.0%
! GCTAGTTCAATGTTTCTTTT+GGG + chr7_2:73111429-73111448 Msa1075010:intron 30.0%
! CTAGTTCAATGTTTCTTTTG+GGG + chr7_2:73111430-73111449 Msa1075010:intron 30.0%
! TAGTTCAATGTTTCTTTTGG+GGG + chr7_2:73111431-73111450 Msa1075010:intron 30.0%
AAGTTATTTATGTACAAGGG+AGG + chr7_2:73111875-73111894 Msa1075010:intron 30.0%
GATTCAAATCATGAGATAGT+AGG + chr7_2:73111964-73111983 Msa1075010:intron 30.0%
CTAATGTGATTCATATTGCT+AGG - chr7_2:73112049-73112068 None:intergenic 30.0%
!! AAAGGTGTTGAAAACTATGA+TGG + chr7_2:73112131-73112150 Msa1075010:CDS 30.0%
!! AAGGTGTTGAAAACTATGAT+GGG + chr7_2:73112132-73112151 Msa1075010:CDS 30.0%
GTTATGTGATAACATTCTCA+AGG - chr7_2:73112240-73112259 None:intergenic 30.0%
!! TATCACATAACTCTAAAACG+AGG + chr7_2:73112249-73112268 Msa1075010:CDS 30.0%
AATGAGGATGCTCAATATTA+TGG + chr7_2:73112323-73112342 Msa1075010:CDS 30.0%
CATTTATGATTCTAATGACC+AGG + chr7_2:73112355-73112374 Msa1075010:intron 30.0%
AAGTTAACCTGTTATATACC+TGG - chr7_2:73112376-73112395 None:intergenic 30.0%
TAGGAGACAAAATTGCATTT+AGG - chr7_2:73112415-73112434 None:intergenic 30.0%
AATTGCGAATCAGCAAAATT+AGG - chr7_2:73112434-73112453 None:intergenic 30.0%
ATTCTGACCTTATCAATGTT+TGG - chr7_2:73112693-73112712 None:intergenic 30.0%
TAACTGCATGGAAATGAATA+GGG - chr7_2:73112910-73112929 None:intergenic 30.0%
TTAACTGCATGGAAATGAAT+AGG - chr7_2:73112911-73112930 None:intergenic 30.0%
ACTAATCATGATTAACTGCA+TGG - chr7_2:73112922-73112941 None:intergenic 30.0%
!!! TTGAATTTGGTTGGTTTTGT+TGG - chr7_2:73111042-73111061 None:intergenic 30.0%
AACAAAACCAACCAAATTCA+AGG + chr7_2:73111041-73111060 Msa1075010:CDS 30.0%
! ATCTACCTTTAGAGAATTCA+TGG + chr7_2:73111132-73111151 Msa1075010:intron 30.0%
TATAGAATGGATCAACACAA+AGG + chr7_2:73111238-73111257 Msa1075010:CDS 30.0%
TACTACAATACCATTTCCAA+AGG - chr7_2:73111332-73111351 None:intergenic 30.0%
! GCTAGTTCAATGTTTCTTTT+GGG + chr7_2:73111429-73111448 Msa1075010:intron 30.0%
! CTAGTTCAATGTTTCTTTTG+GGG + chr7_2:73111430-73111449 Msa1075010:intron 30.0%
! TAGTTCAATGTTTCTTTTGG+GGG + chr7_2:73111431-73111450 Msa1075010:intron 30.0%
AAGTTATTTATGTACAAGGG+AGG + chr7_2:73111875-73111894 Msa1075010:intron 30.0%
GATTCAAATCATGAGATAGT+AGG + chr7_2:73111964-73111983 Msa1075010:intron 30.0%
CTAATGTGATTCATATTGCT+AGG - chr7_2:73112049-73112068 None:intergenic 30.0%
!! AAAGGTGTTGAAAACTATGA+TGG + chr7_2:73112131-73112150 Msa1075010:CDS 30.0%
!! AAGGTGTTGAAAACTATGAT+GGG + chr7_2:73112132-73112151 Msa1075010:CDS 30.0%
GTTATGTGATAACATTCTCA+AGG - chr7_2:73112240-73112259 None:intergenic 30.0%
!! TATCACATAACTCTAAAACG+AGG + chr7_2:73112249-73112268 Msa1075010:CDS 30.0%
AATGAGGATGCTCAATATTA+TGG + chr7_2:73112323-73112342 Msa1075010:CDS 30.0%
CATTTATGATTCTAATGACC+AGG + chr7_2:73112355-73112374 Msa1075010:intron 30.0%
AAGTTAACCTGTTATATACC+TGG - chr7_2:73112376-73112395 None:intergenic 30.0%
TAGGAGACAAAATTGCATTT+AGG - chr7_2:73112415-73112434 None:intergenic 30.0%
AATTGCGAATCAGCAAAATT+AGG - chr7_2:73112434-73112453 None:intergenic 30.0%
ATTCTGACCTTATCAATGTT+TGG - chr7_2:73112693-73112712 None:intergenic 30.0%
TAACTGCATGGAAATGAATA+GGG - chr7_2:73112910-73112929 None:intergenic 30.0%
TTAACTGCATGGAAATGAAT+AGG - chr7_2:73112911-73112930 None:intergenic 30.0%
ACTAATCATGATTAACTGCA+TGG - chr7_2:73112922-73112941 None:intergenic 30.0%
AAACGAAGCAACCTTGAATT+TGG - chr7_2:73111055-73111074 None:intergenic 35.0%
TCAAGTTTCAAACAAGCTGA+AGG + chr7_2:73111079-73111098 Msa1075010:CDS 35.0%
ATGGTCCATGAATTCTCTAA+AGG - chr7_2:73111140-73111159 None:intergenic 35.0%
!!! ACCAATCTTTTAAGACAGAG+TGG + chr7_2:73111268-73111287 Msa1075010:CDS 35.0%
ACCACTCTGTCTTAAAAGAT+TGG - chr7_2:73111272-73111291 None:intergenic 35.0%
AAAGGAGATGATGTTGTTGT+TGG - chr7_2:73111314-73111333 None:intergenic 35.0%
AACAACAACATCATCTCCTT+TGG + chr7_2:73111313-73111332 Msa1075010:CDS 35.0%
! AACATCATCTCCTTTGGAAA+TGG + chr7_2:73111319-73111338 Msa1075010:CDS 35.0%
!! GGCTAGTTCAATGTTTCTTT+TGG + chr7_2:73111428-73111447 Msa1075010:intron 35.0%
CTAATTCTAACGCTATTCGT+TGG - chr7_2:73111765-73111784 None:intergenic 35.0%
CTATGCTTGTTTAGCATTTG+TGG - chr7_2:73111998-73112017 None:intergenic 35.0%
CACAAATGCTAAACAAGCAT+AGG + chr7_2:73111996-73112015 Msa1075010:intron 35.0%
AAATGCTAAACAAGCATAGG+TGG + chr7_2:73111999-73112018 Msa1075010:intron 35.0%
!! AGGTGTTGAAAACTATGATG+GGG + chr7_2:73112133-73112152 Msa1075010:CDS 35.0%
GATAACATTCTCAAGGAAGA+AGG - chr7_2:73112233-73112252 None:intergenic 35.0%
CTAATGACCAGGTATATAAC+AGG + chr7_2:73112366-73112385 Msa1075010:intron 35.0%
TTTGATGTTACTCAGAACGT+AGG + chr7_2:73112453-73112472 Msa1075010:intron 35.0%
TTGATGTTACTCAGAACGTA+GGG + chr7_2:73112454-73112473 Msa1075010:intron 35.0%
ACGAATGAGAAAATTGCAAG+AGG + chr7_2:73112662-73112681 Msa1075010:CDS 35.0%
GGTTGTTCCAAACATTGATA+AGG + chr7_2:73112683-73112702 Msa1075010:CDS 35.0%
CACATCAGAAATGTTAGACT+TGG + chr7_2:73112809-73112828 Msa1075010:CDS 35.0%
AACTGCATGGAAATGAATAG+GGG - chr7_2:73112909-73112928 None:intergenic 35.0%
AAACGAAGCAACCTTGAATT+TGG - chr7_2:73111055-73111074 None:intergenic 35.0%
TCAAGTTTCAAACAAGCTGA+AGG + chr7_2:73111079-73111098 Msa1075010:CDS 35.0%
ATGGTCCATGAATTCTCTAA+AGG - chr7_2:73111140-73111159 None:intergenic 35.0%
!!! ACCAATCTTTTAAGACAGAG+TGG + chr7_2:73111268-73111287 Msa1075010:CDS 35.0%
ACCACTCTGTCTTAAAAGAT+TGG - chr7_2:73111272-73111291 None:intergenic 35.0%
AAAGGAGATGATGTTGTTGT+TGG - chr7_2:73111314-73111333 None:intergenic 35.0%
AACAACAACATCATCTCCTT+TGG + chr7_2:73111313-73111332 Msa1075010:CDS 35.0%
! AACATCATCTCCTTTGGAAA+TGG + chr7_2:73111319-73111338 Msa1075010:CDS 35.0%
!! GGCTAGTTCAATGTTTCTTT+TGG + chr7_2:73111428-73111447 Msa1075010:intron 35.0%
CTAATTCTAACGCTATTCGT+TGG - chr7_2:73111765-73111784 None:intergenic 35.0%
CTATGCTTGTTTAGCATTTG+TGG - chr7_2:73111998-73112017 None:intergenic 35.0%
CACAAATGCTAAACAAGCAT+AGG + chr7_2:73111996-73112015 Msa1075010:intron 35.0%
AAATGCTAAACAAGCATAGG+TGG + chr7_2:73111999-73112018 Msa1075010:intron 35.0%
!! AGGTGTTGAAAACTATGATG+GGG + chr7_2:73112133-73112152 Msa1075010:CDS 35.0%
GATAACATTCTCAAGGAAGA+AGG - chr7_2:73112233-73112252 None:intergenic 35.0%
CTAATGACCAGGTATATAAC+AGG + chr7_2:73112366-73112385 Msa1075010:intron 35.0%
TTTGATGTTACTCAGAACGT+AGG + chr7_2:73112453-73112472 Msa1075010:intron 35.0%
TTGATGTTACTCAGAACGTA+GGG + chr7_2:73112454-73112473 Msa1075010:intron 35.0%
ACGAATGAGAAAATTGCAAG+AGG + chr7_2:73112662-73112681 Msa1075010:CDS 35.0%
GGTTGTTCCAAACATTGATA+AGG + chr7_2:73112683-73112702 Msa1075010:CDS 35.0%
CACATCAGAAATGTTAGACT+TGG + chr7_2:73112809-73112828 Msa1075010:CDS 35.0%
AACTGCATGGAAATGAATAG+GGG - chr7_2:73112909-73112928 None:intergenic 35.0%
GAAGCAACCTTGAATTTGGT+TGG - chr7_2:73111051-73111070 None:intergenic 40.0%
GAAGGTTGTGCTACAAATTC+TGG + chr7_2:73111097-73111116 Msa1075010:CDS 40.0%
AAGACACATGAATTCTCAGC+AGG + chr7_2:73111213-73111232 Msa1075010:CDS 40.0%
AGACACATGAATTCTCAGCA+GGG + chr7_2:73111214-73111233 Msa1075010:CDS 40.0%
TTCTCAGCAGGGTTATAGAA+TGG + chr7_2:73111225-73111244 Msa1075010:CDS 40.0%
GTGAATATAGTGGTCAGCTA+AGG + chr7_2:73111532-73111551 Msa1075010:intron 40.0%
TATAGTGGTCAGCTAAGGTT+TGG + chr7_2:73111537-73111556 Msa1075010:intron 40.0%
GCAGGGTATGAATCTATGAA+AGG + chr7_2:73112113-73112132 Msa1075010:intron 40.0%
!! AACTCTAAAACGAGGAGTGA+TGG + chr7_2:73112257-73112276 Msa1075010:CDS 40.0%
TGATGTTACTCAGAACGTAG+GGG + chr7_2:73112455-73112474 Msa1075010:intron 40.0%
GAAGCAACCTTGAATTTGGT+TGG - chr7_2:73111051-73111070 None:intergenic 40.0%
GAAGGTTGTGCTACAAATTC+TGG + chr7_2:73111097-73111116 Msa1075010:CDS 40.0%
AAGACACATGAATTCTCAGC+AGG + chr7_2:73111213-73111232 Msa1075010:CDS 40.0%
AGACACATGAATTCTCAGCA+GGG + chr7_2:73111214-73111233 Msa1075010:CDS 40.0%
TTCTCAGCAGGGTTATAGAA+TGG + chr7_2:73111225-73111244 Msa1075010:CDS 40.0%
GTGAATATAGTGGTCAGCTA+AGG + chr7_2:73111532-73111551 Msa1075010:intron 40.0%
TATAGTGGTCAGCTAAGGTT+TGG + chr7_2:73111537-73111556 Msa1075010:intron 40.0%
GCAGGGTATGAATCTATGAA+AGG + chr7_2:73112113-73112132 Msa1075010:intron 40.0%
!! AACTCTAAAACGAGGAGTGA+TGG + chr7_2:73112257-73112276 Msa1075010:CDS 40.0%
TGATGTTACTCAGAACGTAG+GGG + chr7_2:73112455-73112474 Msa1075010:intron 40.0%
GTTGGAGAAATGACCAGCAT+GGG - chr7_2:73111296-73111315 None:intergenic 45.0%
TGTTGGAGAAATGACCAGCA+TGG - chr7_2:73111297-73111316 None:intergenic 45.0%
CTCAAGGAAGAAGGACTTCT+TGG - chr7_2:73112224-73112243 None:intergenic 45.0%
AAAACGAGGAGTGATGGCAT+TGG + chr7_2:73112263-73112282 Msa1075010:CDS 45.0%
CTCCTTGTCTTCGATCATCA+CGG - chr7_2:73112298-73112317 None:intergenic 45.0%
AAGACAAGGAGGTAGCAATG+AGG + chr7_2:73112307-73112326 Msa1075010:CDS 45.0%
TCGGAACAGAATCTGGAAAC+TGG - chr7_2:73112563-73112582 None:intergenic 45.0%
TTCTTCTTACCCTTTCGGCA+AGG - chr7_2:73112629-73112648 None:intergenic 45.0%
CCGAGTTCTTCTTACCCTTT+CGG - chr7_2:73112634-73112653 None:intergenic 45.0%
CCGAAAGGGTAAGAAGAACT+CGG + chr7_2:73112631-73112650 Msa1075010:CDS 45.0%
GTTGGAGAAATGACCAGCAT+GGG - chr7_2:73111296-73111315 None:intergenic 45.0%
TGTTGGAGAAATGACCAGCA+TGG - chr7_2:73111297-73111316 None:intergenic 45.0%
CTCAAGGAAGAAGGACTTCT+TGG - chr7_2:73112224-73112243 None:intergenic 45.0%
AAAACGAGGAGTGATGGCAT+TGG + chr7_2:73112263-73112282 Msa1075010:CDS 45.0%
CTCCTTGTCTTCGATCATCA+CGG - chr7_2:73112298-73112317 None:intergenic 45.0%
AAGACAAGGAGGTAGCAATG+AGG + chr7_2:73112307-73112326 Msa1075010:CDS 45.0%
TCGGAACAGAATCTGGAAAC+TGG - chr7_2:73112563-73112582 None:intergenic 45.0%
TTCTTCTTACCCTTTCGGCA+AGG - chr7_2:73112629-73112648 None:intergenic 45.0%
CCGAGTTCTTCTTACCCTTT+CGG - chr7_2:73112634-73112653 None:intergenic 45.0%
CCGAAAGGGTAAGAAGAACT+CGG + chr7_2:73112631-73112650 Msa1075010:CDS 45.0%
!!! TTAACTTTTTTTTTTTTATT+AGG + chr7_2:73112389-73112408 Msa1075010:intron 5.0%
!!! TTAACTTTTTTTTTTTTATT+AGG + chr7_2:73112389-73112408 Msa1075010:intron 5.0%
GATGGGGTGAATGACAGTGA+TGG + chr7_2:73112149-73112168 Msa1075010:CDS 50.0%
AGCCGTGATGATCGAAGACA+AGG + chr7_2:73112293-73112312 Msa1075010:CDS 50.0%
CGTGATGATCGAAGACAAGG+AGG + chr7_2:73112296-73112315 Msa1075010:CDS 50.0%
ATGCTGCTCGGAACAGAATC+TGG - chr7_2:73112570-73112589 None:intergenic 50.0%
CTCTTTGCTCTGATGCTGCT+CGG - chr7_2:73112582-73112601 None:intergenic 50.0%
AGCAGCATCAGAGCAAAGAG+AGG + chr7_2:73112582-73112601 Msa1075010:CDS 50.0%
ATCCTAGAAGCCTTGCCGAA+AGG + chr7_2:73112616-73112635 Msa1075010:CDS 50.0%
TCCTAGAAGCCTTGCCGAAA+GGG + chr7_2:73112617-73112636 Msa1075010:CDS 50.0%
GATGGGGTGAATGACAGTGA+TGG + chr7_2:73112149-73112168 Msa1075010:CDS 50.0%
AGCCGTGATGATCGAAGACA+AGG + chr7_2:73112293-73112312 Msa1075010:CDS 50.0%
CGTGATGATCGAAGACAAGG+AGG + chr7_2:73112296-73112315 Msa1075010:CDS 50.0%
ATGCTGCTCGGAACAGAATC+TGG - chr7_2:73112570-73112589 None:intergenic 50.0%
CTCTTTGCTCTGATGCTGCT+CGG - chr7_2:73112582-73112601 None:intergenic 50.0%
AGCAGCATCAGAGCAAAGAG+AGG + chr7_2:73112582-73112601 Msa1075010:CDS 50.0%
ATCCTAGAAGCCTTGCCGAA+AGG + chr7_2:73112616-73112635 Msa1075010:CDS 50.0%
TCCTAGAAGCCTTGCCGAAA+GGG + chr7_2:73112617-73112636 Msa1075010:CDS 50.0%
AGACAGAGTGGTTCCCATGC+TGG + chr7_2:73111280-73111299 Msa1075010:CDS 55.0%
ACCCTTTCGGCAAGGCTTCT+AGG - chr7_2:73112621-73112640 None:intergenic 55.0%
AGACAGAGTGGTTCCCATGC+TGG + chr7_2:73111280-73111299 Msa1075010:CDS 55.0%
ACCCTTTCGGCAAGGCTTCT+AGG - chr7_2:73112621-73112640 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 73111010 73113029 73111010 ID=Msa1075010;Name=Msa1075010
chr7_2 mRNA 73111010 73113029 73111010 ID=Msa1075010-mRNA-1;Parent=Msa1075010;Name=Msa1075010-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|0.6|0.33|6|0|261
chr7_2 exon 73111010 73111118 73111010 ID=Msa1075010-mRNA-1:exon:16938;Parent=Msa1075010-mRNA-1
chr7_2 exon 73111179 73111340 73111179 ID=Msa1075010-mRNA-1:exon:16939;Parent=Msa1075010-mRNA-1
chr7_2 exon 73112117 73112344 73112117 ID=Msa1075010-mRNA-1:exon:16940;Parent=Msa1075010-mRNA-1
chr7_2 exon 73112535 73112704 73112535 ID=Msa1075010-mRNA-1:exon:16941;Parent=Msa1075010-mRNA-1
chr7_2 exon 73112801 73112869 73112801 ID=Msa1075010-mRNA-1:exon:16942;Parent=Msa1075010-mRNA-1
chr7_2 exon 73112982 73113029 73112982 ID=Msa1075010-mRNA-1:exon:16943;Parent=Msa1075010-mRNA-1
chr7_2 CDS 73111010 73111118 73111010 ID=Msa1075010-mRNA-1:cds;Parent=Msa1075010-mRNA-1
chr7_2 CDS 73111179 73111340 73111179 ID=Msa1075010-mRNA-1:cds;Parent=Msa1075010-mRNA-1
chr7_2 CDS 73112117 73112344 73112117 ID=Msa1075010-mRNA-1:cds;Parent=Msa1075010-mRNA-1
chr7_2 CDS 73112535 73112704 73112535 ID=Msa1075010-mRNA-1:cds;Parent=Msa1075010-mRNA-1
chr7_2 CDS 73112801 73112869 73112801 ID=Msa1075010-mRNA-1:cds;Parent=Msa1075010-mRNA-1
chr7_2 CDS 73112982 73113029 73112982 ID=Msa1075010-mRNA-1:cds;Parent=Msa1075010-mRNA-1
Gene Sequence

>Msa1075010

ATGGATTTGAATTCTCATTATCAACAACTCCAACAAAACCAACCAAATTCAAGGTTGCTTCGTTTTCGTTCAAGTTTCAAACAAGCTGAAGGTTGTGCTACAAATTCTGGTGACAACAACAACAACGAGTCTTCATTATCTCAAAGACACATGAATTCTCAGCAGGGTTATAGAATGGATCAACACAAAGGTTTTTATACCAATCTTTTAAGACAGAGTGGTTCCCATGCTGGTCATTTCTCCAACAACAACATCATCTCCTTTGGAAATGGGTATGAATCTATGAAAGGTGTTGAAAACTATGATGGGGTGAATGACAGTGATGGTGAACTTACTCTATCTATGAACATATTGAACAATCAAATTGGCTTCTCACCAAGAAGTCCTTCTTCCTTGAGAATGTTATCACATAACTCTAAAACGAGGAGTGATGGCATTGGAACAACTAGCCGTGATGATCGAAGACAAGGAGGTAGCAATGAGGATGCTCAATATTATGAAATGTTTATTGTGGAGAATTTGGTCCAGTTTCCAGATTCTGTTCCGAGCAGCATCAGAGCAAAGAGAGGCTTTGCAACACATCCTAGAAGCCTTGCCGAAAGGGTAAGAAGAACTCGGATAAGTGAACGAATGAGAAAATTGCAAGAGGTTGTTCCAAACATTGATAAGCAAACTTGCACATCAGAAATGTTAGACTTGGCTGTAGAGTACATTAAAGATCTTCAAAAACAATTAAAGACTATGAGTGCAAAAAGAGCTAAGTGCAGATGCAGAAACAAGAAATGA

Protein sequence

>Msa1075010

MDLNSHYQQLQQNQPNSRLLRFRSSFKQAEGCATNSGDNNNNESSLSQRHMNSQQGYRMDQHKGFYTNLLRQSGSHAGHFSNNNIISFGNGYESMKGVENYDGVNDSDGELTLSMNILNNQIGFSPRSPSSLRMLSHNSKTRSDGIGTTSRDDRRQGGSNEDAQYYEMFIVENLVQFPDSVPSSIRAKRGFATHPRSLAERVRRTRISERMRKLQEVVPNIDKQTCTSEMLDLAVEYIKDLQKQLKTMSAKRAKCRCRNKK*