AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1034950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1034950 MtrunA17_Chr7g0258181 75.549 319 20 4 1 261 1 319 2.88e-167 465
Msa1034950 MtrunA17_Chr1g0174271 39.084 371 103 11 4 257 6 370 3.69e-57 187
Msa1034950 MtrunA17_Chr4g0032951 38.783 263 95 7 60 261 174 431 2.78e-42 149
Msa1034950 MtrunA17_Chr2g0329041 40.000 255 94 8 62 261 157 407 2.95e-39 140
Msa1034950 MtrunA17_Chr4g0014771 69.620 79 24 0 179 257 112 190 6.16e-34 121
Msa1034950 MtrunA17_Chr3g0087771 61.538 91 35 0 167 257 304 394 2.41e-33 125
Msa1034950 MtrunA17_Chr8g0351881 60.440 91 36 0 167 257 298 388 1.23e-32 122
Msa1034950 MtrunA17_Chr1g0213791 56.522 92 38 1 170 261 252 341 1.66e-27 108
Msa1034950 MtrunA17_Chr1g0152131 52.113 71 34 0 185 255 260 330 3.79e-16 77.4
Msa1034950 MtrunA17_Chr4g0074161 54.412 68 30 1 185 252 206 272 4.34e-16 77.4
Msa1034950 MtrunA17_Chr1g0190731 50.667 75 36 1 178 252 186 259 8.52e-16 75.9
Msa1034950 MtrunA17_Chr5g0421111 50.000 74 37 0 185 258 365 438 1.55e-15 75.9
Msa1034950 MtrunA17_Chr3g0131771 53.731 67 31 0 185 251 147 213 2.71e-15 74.3
Msa1034950 MtrunA17_Chr7g0234761 48.649 74 38 0 185 258 317 390 4.26e-15 74.7
Msa1034950 MtrunA17_Chr3g0144641 50.000 74 37 0 185 258 191 264 7.71e-15 73.6
Msa1034950 MtrunA17_Chr8g0365941 50.725 69 34 0 185 253 305 373 1.57e-14 72.8
Msa1034950 MtrunA17_Chr8g0339091 45.946 74 40 0 185 258 291 364 2.07e-14 72.4
Msa1034950 MtrunA17_Chr4g0035101 45.679 81 42 1 178 258 138 216 6.64e-14 70.5
Msa1034950 MtrunA17_Chr8g0385911 49.275 69 35 0 185 253 145 213 8.64e-14 70.1
Msa1034950 MtrunA17_Chr8g0363921 47.761 67 35 0 185 251 151 217 5.45e-13 67.4
Msa1034950 MtrunA17_Chr7g0258161 41.892 74 43 0 185 258 173 246 9.23e-12 64.3
Msa1034950 MtrunA17_Chr5g0415291 46.269 67 36 0 185 251 112 178 9.59e-12 63.2
Msa1034950 MtrunA17_Chr1g0152651 53.846 65 29 1 186 250 275 338 2.52e-11 63.2
Msa1034950 MtrunA17_Chr6g0484271 44.776 67 37 0 185 251 155 221 3.12e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1034950 AT2G42280.1 69.474 95 29 0 167 261 261 355 1.19e-39 141
Msa1034950 AT1G51140.1 67.816 87 26 1 171 257 292 376 4.15e-35 129
Msa1034950 AT2G42280.3 74.074 81 21 0 167 247 261 341 1.08e-33 125
Msa1034950 AT2G43140.1 60.870 92 35 1 167 257 115 206 1.26e-32 119
Msa1034950 AT1G35460.1 61.176 85 33 0 177 261 173 257 1.63e-32 120
Msa1034950 AT2G43140.2 60.870 92 35 1 167 257 212 303 3.78e-32 120
Msa1034950 AT4G09180.1 59.341 91 35 1 171 261 172 260 2.22e-30 114
Msa1034950 AT1G05805.1 59.341 91 36 1 168 257 265 355 3.94e-30 116
Msa1034950 AT1G35460.2 76.596 47 11 0 177 223 173 219 2.58e-18 81.6
Msa1034950 AT2G24260.2 51.282 78 37 1 175 252 25 101 1.70e-16 77.0
Msa1034950 AT5G58010.1 54.412 68 30 1 185 252 99 165 3.60e-16 77.0
Msa1034950 AT2G24260.1 51.282 78 37 1 175 252 128 204 4.77e-16 77.0
Msa1034950 AT4G30980.1 54.412 68 30 1 185 252 130 196 1.44e-15 75.5
Msa1034950 AT4G30980.2 54.412 68 30 1 185 252 178 244 1.80e-15 75.5
Msa1034950 AT1G10120.2 52.113 71 34 0 185 255 206 276 3.82e-15 74.7
Msa1034950 AT1G10120.1 52.113 71 34 0 185 255 206 276 3.82e-15 74.7
Msa1034950 AT4G34530.1 48.649 74 38 0 185 258 172 245 4.79e-15 73.9
Msa1034950 AT1G68920.3 49.296 71 36 0 185 255 302 372 7.77e-15 74.3
Msa1034950 AT5G50915.1 53.731 67 31 0 185 251 136 202 8.26e-15 72.8
Msa1034950 AT5G50915.2 53.731 67 31 0 185 251 136 202 8.26e-15 72.8
Msa1034950 AT1G68920.1 49.296 71 36 0 185 255 303 373 8.63e-15 73.9
Msa1034950 AT1G68920.4 49.296 71 36 0 185 255 303 373 8.63e-15 73.9
Msa1034950 AT1G68920.2 49.296 71 36 0 185 255 303 373 8.63e-15 73.9
Msa1034950 AT5G50915.3 53.731 67 31 0 185 251 136 202 9.38e-15 72.4
Msa1034950 AT5G50915.4 53.731 67 31 0 185 251 136 202 9.38e-15 72.4
Msa1034950 AT3G07340.1 47.297 74 39 0 185 258 258 331 2.59e-14 72.4
Msa1034950 AT3G07340.2 47.297 74 39 0 185 258 258 331 2.98e-14 72.4
Msa1034950 AT1G26260.4 52.239 67 32 0 185 251 223 289 4.13e-14 71.6
Msa1034950 AT1G26260.1 52.239 67 32 0 185 251 223 289 4.13e-14 71.6
Msa1034950 AT1G26260.6 52.239 67 32 0 185 251 223 289 4.13e-14 71.6
Msa1034950 AT1G26260.2 52.239 67 32 0 185 251 223 289 4.13e-14 71.6
Msa1034950 AT1G26260.5 52.239 67 32 0 185 251 201 267 4.59e-14 71.6
Msa1034950 AT1G26260.3 52.239 67 32 0 185 251 172 238 5.26e-14 71.2
Msa1034950 AT1G25330.1 47.761 67 35 0 185 251 104 170 8.31e-14 69.3
Msa1034950 AT5G48560.2 49.254 67 34 0 185 251 301 367 2.42e-13 69.7
Msa1034950 AT5G48560.1 49.254 67 34 0 185 251 301 367 2.45e-13 69.7
Msa1034950 AT3G23690.1 45.946 74 40 0 185 258 191 264 3.06e-13 69.3
Msa1034950 AT4G36540.1 44.156 77 41 1 175 251 133 207 5.12e-13 68.2
Msa1034950 AT4G36540.2 44.156 77 41 1 175 251 133 207 5.14e-13 68.2
Msa1034950 AT1G18400.2 47.761 67 35 0 185 251 145 211 1.81e-12 65.9
Msa1034950 AT1G59640.1 47.761 67 35 0 185 251 136 202 2.39e-12 65.9
Msa1034950 AT1G18400.1 47.761 67 35 0 185 251 145 211 2.90e-12 65.5
Msa1034950 AT3G57800.2 43.243 74 42 0 185 258 204 277 2.99e-12 66.2
Msa1034950 AT2G18300.2 46.377 69 37 0 185 253 185 253 2.99e-12 66.2
Msa1034950 AT2G18300.1 46.377 69 37 0 185 253 185 253 3.13e-12 65.9
Msa1034950 AT2G42300.1 43.243 74 42 0 185 258 185 258 3.25e-12 65.9
Msa1034950 AT2G18300.3 46.377 69 37 0 185 253 185 253 3.57e-12 65.9
Msa1034950 AT1G73830.2 44.776 67 37 0 185 251 147 213 4.08e-12 65.1
Msa1034950 AT1G73830.1 44.776 67 37 0 185 251 147 213 4.50e-12 64.7
Msa1034950 AT2G42300.4 43.243 74 42 0 185 258 185 258 5.03e-12 64.7
Msa1034950 AT1G59640.2 47.761 67 35 0 185 251 136 202 8.21e-12 64.7
Msa1034950 AT5G62610.2 44.776 67 37 0 185 251 153 219 2.19e-11 63.2
Msa1034950 AT5G62610.1 44.776 67 37 0 185 251 153 219 2.19e-11 63.2
Msa1034950 AT2G14760.1 53.846 65 29 1 186 250 238 301 3.10e-11 63.2

Find 50 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACGAAGCAACCTTGAATT+TGG 0.214893 7_1:-70679482 None:intergenic
CTCAAGGAAGAAGGACTTCT+TGG 0.270896 7_1:-70680648 None:intergenic
AACATATTGAACAATCAAAT+TGG 0.290694 7_1:+70680618 Msa1034950:CDS
ACCCTTTCGGCAAGGCTTCT+AGG 0.305032 7_1:-70681044 None:intergenic
CCGAGTTCTTCTTACCCTTT+CGG 0.326997 7_1:-70681057 None:intergenic
ATGCTGCTCGGAACAGAATC+TGG 0.330247 7_1:-70680993 None:intergenic
AATGTTTATTGTGGAGAATT+TGG 0.338878 7_1:+70680962 Msa1034950:CDS
AATGAGGATGCTCAATATTA+TGG 0.342968 7_1:+70680750 Msa1034950:CDS
ATTCTGACCTTATCAATGTT+TGG 0.345820 7_1:-70681116 None:intergenic
GAAGGTTGTGCTACAAATTC+TGG 0.353997 7_1:+70679527 Msa1034950:CDS
AACAACAACATCATCTCCTT+TGG 0.393746 7_1:+70679743 Msa1034950:CDS
TCCTAGAAGCCTTGCCGAAA+GGG 0.399735 7_1:+70681043 Msa1034950:CDS
AACATCATCTCCTTTGGAAA+TGG 0.414195 7_1:+70679749 Msa1034950:CDS
CTCTTTGCTCTGATGCTGCT+CGG 0.438402 7_1:-70681005 None:intergenic
ACCACTCTGTCTTAAAAGAT+TGG 0.442108 7_1:-70679699 None:intergenic
AACAAAACCAACCAAATTCA+AGG 0.457834 7_1:+70679471 Msa1034950:CDS
AAAGGAGATGATGTTGTTGT+TGG 0.459546 7_1:-70679741 None:intergenic
TCGGAACAGAATCTGGAAAC+TGG 0.461159 7_1:-70680986 None:intergenic
GGTTGTTCCAAACATTGATA+AGG 0.462084 7_1:+70681109 Msa1034950:CDS
AGACAGAGTGGTTCCCATGC+TGG 0.479729 7_1:+70679710 Msa1034950:CDS
AAAGGTGTTGAAAACTATGA+TGG 0.487777 7_1:+70680558 Msa1034950:CDS
CACATCAGAAATGTTAGACT+TGG 0.499859 7_1:+70681235 Msa1034950:CDS
AAGACACATGAATTCTCAGC+AGG 0.502231 7_1:+70679643 Msa1034950:CDS
TTCTCAGCAGGGTTATAGAA+TGG 0.503073 7_1:+70679655 Msa1034950:CDS
ATCATCAGAAATGTTTATTG+TGG 0.507405 7_1:+70680953 Msa1034950:intron
GAAGCAACCTTGAATTTGGT+TGG 0.517186 7_1:-70679478 None:intergenic
GATAACATTCTCAAGGAAGA+AGG 0.538937 7_1:-70680657 None:intergenic
ATCCTAGAAGCCTTGCCGAA+AGG 0.543719 7_1:+70681042 Msa1034950:CDS
AACTCTAAAACGAGGAGTGA+TGG 0.547308 7_1:+70680684 Msa1034950:CDS
TTCTTCTTACCCTTTCGGCA+AGG 0.550067 7_1:-70681052 None:intergenic
TCAAGTTTCAAACAAGCTGA+AGG 0.555684 7_1:+70679509 Msa1034950:CDS
CCGAAAGGGTAAGAAGAACT+CGG 0.565752 7_1:+70681057 Msa1034950:CDS
CTCCTTGTCTTCGATCATCA+CGG 0.577461 7_1:-70680722 None:intergenic
AAAACGAGGAGTGATGGCAT+TGG 0.578334 7_1:+70680690 Msa1034950:CDS
GCAGGGTATGAATCTATGAA+AGG 0.606763 7_1:+70680540 Msa1034950:intron
AAGGTGTTGAAAACTATGAT+GGG 0.612325 7_1:+70680559 Msa1034950:CDS
GTTATGTGATAACATTCTCA+AGG 0.612399 7_1:-70680664 None:intergenic
TACTACAATACCATTTCCAA+AGG 0.613692 7_1:-70679759 None:intergenic
AGCAGCATCAGAGCAAAGAG+AGG 0.624459 7_1:+70681008 Msa1034950:CDS
ACGAATGAGAAAATTGCAAG+AGG 0.630200 7_1:+70681088 Msa1034950:CDS
TATAGAATGGATCAACACAA+AGG 0.657311 7_1:+70679668 Msa1034950:CDS
AGCCGTGATGATCGAAGACA+AGG 0.662100 7_1:+70680720 Msa1034950:CDS
GTTGGAGAAATGACCAGCAT+GGG 0.675608 7_1:-70679723 None:intergenic
TGTTGGAGAAATGACCAGCA+TGG 0.677077 7_1:-70679724 None:intergenic
CGTGATGATCGAAGACAAGG+AGG 0.691311 7_1:+70680723 Msa1034950:CDS
AGACACATGAATTCTCAGCA+GGG 0.696388 7_1:+70679644 Msa1034950:CDS
GATGGGGTGAATGACAGTGA+TGG 0.701721 7_1:+70680576 Msa1034950:CDS
AAGACAAGGAGGTAGCAATG+AGG 0.720936 7_1:+70680734 Msa1034950:CDS
AGGTGTTGAAAACTATGATG+GGG 0.756832 7_1:+70680560 Msa1034950:CDS
TATCACATAACTCTAAAACG+AGG 0.781502 7_1:+70680676 Msa1034950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAACATAACTTTTTTT+AGG + chr7_1:70680059-70680078 Msa1034950:intron 10.0%
!!! GTTAACTTTTTTTTTTTATT+AGG + chr7_1:70680815-70680834 Msa1034950:intron 10.0%
!!! ATTAAAACATAACTTTTTTT+AGG + chr7_1:70680059-70680078 Msa1034950:intron 10.0%
!!! GTTAACTTTTTTTTTTTATT+AGG + chr7_1:70680815-70680834 Msa1034950:intron 10.0%
!! TGCTAAATCTAAAAAAAAAA+TGG + chr7_1:70680092-70680111 Msa1034950:intron 15.0%
!! GCTAAATCTAAAAAAAAAAT+GGG + chr7_1:70680093-70680112 Msa1034950:intron 15.0%
!! TTATCATTAAGAATAGAATT+CGG + chr7_1:70680133-70680152 Msa1034950:intron 15.0%
!! AAAAAAGTTATTTATGTACA+AGG + chr7_1:70680299-70680318 Msa1034950:intron 15.0%
!! AAAAAGTTATTTATGTACAA+GGG + chr7_1:70680300-70680319 Msa1034950:intron 15.0%
!! AAAACATAATTGTCTTAAAA+GGG - chr7_1:70681170-70681189 None:intergenic 15.0%
!! AAAAACATAATTGTCTTAAA+AGG - chr7_1:70681171-70681190 None:intergenic 15.0%
!!! AGTTAAACATTGTTTAATTT+TGG + chr7_1:70681201-70681220 Msa1034950:intron 15.0%
!! ATTAAAATATATATTAGTGC+AGG - chr7_1:70681376-70681395 None:intergenic 15.0%
!! TGCTAAATCTAAAAAAAAAA+TGG + chr7_1:70680092-70680111 Msa1034950:intron 15.0%
!! GCTAAATCTAAAAAAAAAAT+GGG + chr7_1:70680093-70680112 Msa1034950:intron 15.0%
!! TTATCATTAAGAATAGAATT+CGG + chr7_1:70680133-70680152 Msa1034950:intron 15.0%
!! AAAAAAGTTATTTATGTACA+AGG + chr7_1:70680299-70680318 Msa1034950:intron 15.0%
!! AAAAAGTTATTTATGTACAA+GGG + chr7_1:70680300-70680319 Msa1034950:intron 15.0%
!! AAAACATAATTGTCTTAAAA+GGG - chr7_1:70681170-70681189 None:intergenic 15.0%
!! AAAAACATAATTGTCTTAAA+AGG - chr7_1:70681171-70681190 None:intergenic 15.0%
!!! AGTTAAACATTGTTTAATTT+TGG + chr7_1:70681201-70681220 Msa1034950:intron 15.0%
!! ATTAAAATATATATTAGTGC+AGG - chr7_1:70681376-70681395 None:intergenic 15.0%
!! CTTTATGATTAAAAGGATTA+TGG - chr7_1:70679589-70679608 None:intergenic 20.0%
!!! CATAATCCTTTTAATCATAA+AGG + chr7_1:70679587-70679606 Msa1034950:intron 20.0%
!!! TTCTATTTTAAGAAAGTGTA+GGG - chr7_1:70679891-70679910 None:intergenic 20.0%
!!! ATTCTATTTTAAGAAAGTGT+AGG - chr7_1:70679892-70679911 None:intergenic 20.0%
!!! ATTTAGTGTTAAATGACTTT+TGG + chr7_1:70680034-70680053 Msa1034950:intron 20.0%
!! AACAATTTCTGTCTAATTTA+TGG + chr7_1:70680352-70680371 Msa1034950:intron 20.0%
!! AACATATTGAACAATCAAAT+TGG + chr7_1:70680618-70680637 Msa1034950:CDS 20.0%
!! AAACATAATTGTCTTAAAAG+GGG - chr7_1:70681169-70681188 None:intergenic 20.0%
!! AGATCTTCAAAAACAATTAA+AGG + chr7_1:70681274-70681293 Msa1034950:CDS 20.0%
!! CTTTATGATTAAAAGGATTA+TGG - chr7_1:70679589-70679608 None:intergenic 20.0%
!!! CATAATCCTTTTAATCATAA+AGG + chr7_1:70679587-70679606 Msa1034950:intron 20.0%
!!! TTCTATTTTAAGAAAGTGTA+GGG - chr7_1:70679891-70679910 None:intergenic 20.0%
!!! ATTCTATTTTAAGAAAGTGT+AGG - chr7_1:70679892-70679911 None:intergenic 20.0%
!!! ATTTAGTGTTAAATGACTTT+TGG + chr7_1:70680034-70680053 Msa1034950:intron 20.0%
!! AACAATTTCTGTCTAATTTA+TGG + chr7_1:70680352-70680371 Msa1034950:intron 20.0%
!! AACATATTGAACAATCAAAT+TGG + chr7_1:70680618-70680637 Msa1034950:CDS 20.0%
!! AAACATAATTGTCTTAAAAG+GGG - chr7_1:70681169-70681188 None:intergenic 20.0%
!! AGATCTTCAAAAACAATTAA+AGG + chr7_1:70681274-70681293 Msa1034950:CDS 20.0%
! TTGTCACCTTTATGATTAAA+AGG - chr7_1:70679596-70679615 None:intergenic 25.0%
!! TTTCTTCTAGACAACTTTTT+AGG + chr7_1:70679837-70679856 Msa1034950:intron 25.0%
!!! GCAATTTTTTGTGAATATAG+TGG + chr7_1:70679952-70679971 Msa1034950:intron 25.0%
! ACTAAAATTGTATCTTGTGT+TGG - chr7_1:70679994-70680013 None:intergenic 25.0%
! TGTATTTCATTGTAGTTACA+TGG + chr7_1:70680220-70680239 Msa1034950:intron 25.0%
! TGCATATAAATGTAAATTGC+AGG + chr7_1:70680522-70680541 Msa1034950:intron 25.0%
! GCATATAAATGTAAATTGCA+GGG + chr7_1:70680523-70680542 Msa1034950:intron 25.0%
!! AACATTTCTGATGATTTTCT+TGG - chr7_1:70680948-70680967 None:intergenic 25.0%
! ATCATCAGAAATGTTTATTG+TGG + chr7_1:70680953-70680972 Msa1034950:intron 25.0%
! AATGTTTATTGTGGAGAATT+TGG + chr7_1:70680962-70680981 Msa1034950:CDS 25.0%
! AACATAATTGTCTTAAAAGG+GGG - chr7_1:70681168-70681187 None:intergenic 25.0%
! TTGTCACCTTTATGATTAAA+AGG - chr7_1:70679596-70679615 None:intergenic 25.0%
!! TTTCTTCTAGACAACTTTTT+AGG + chr7_1:70679837-70679856 Msa1034950:intron 25.0%
!!! GCAATTTTTTGTGAATATAG+TGG + chr7_1:70679952-70679971 Msa1034950:intron 25.0%
! ACTAAAATTGTATCTTGTGT+TGG - chr7_1:70679994-70680013 None:intergenic 25.0%
! TGTATTTCATTGTAGTTACA+TGG + chr7_1:70680220-70680239 Msa1034950:intron 25.0%
! TGCATATAAATGTAAATTGC+AGG + chr7_1:70680522-70680541 Msa1034950:intron 25.0%
! GCATATAAATGTAAATTGCA+GGG + chr7_1:70680523-70680542 Msa1034950:intron 25.0%
!! AACATTTCTGATGATTTTCT+TGG - chr7_1:70680948-70680967 None:intergenic 25.0%
! ATCATCAGAAATGTTTATTG+TGG + chr7_1:70680953-70680972 Msa1034950:intron 25.0%
! AATGTTTATTGTGGAGAATT+TGG + chr7_1:70680962-70680981 Msa1034950:CDS 25.0%
! AACATAATTGTCTTAAAAGG+GGG - chr7_1:70681168-70681187 None:intergenic 25.0%
!!! TTGAATTTGGTTGGTTTTGT+TGG - chr7_1:70679472-70679491 None:intergenic 30.0%
AACAAAACCAACCAAATTCA+AGG + chr7_1:70679471-70679490 Msa1034950:CDS 30.0%
! ATCTACCTTTAGAGAATTCA+TGG + chr7_1:70679562-70679581 Msa1034950:intron 30.0%
TATAGAATGGATCAACACAA+AGG + chr7_1:70679668-70679687 Msa1034950:CDS 30.0%
TACTACAATACCATTTCCAA+AGG - chr7_1:70679762-70679781 None:intergenic 30.0%
! GCTAGTTCAATGTTTCTTTT+GGG + chr7_1:70679859-70679878 Msa1034950:intron 30.0%
! CTAGTTCAATGTTTCTTTTG+GGG + chr7_1:70679860-70679879 Msa1034950:intron 30.0%
! TAGTTCAATGTTTCTTTTGG+GGG + chr7_1:70679861-70679880 Msa1034950:intron 30.0%
AAGTTATTTATGTACAAGGG+AGG + chr7_1:70680303-70680322 Msa1034950:intron 30.0%
GATTCAAATCATGAGATAGT+AGG + chr7_1:70680391-70680410 Msa1034950:intron 30.0%
CTAATGTGATTCATATTGCT+AGG - chr7_1:70680476-70680495 None:intergenic 30.0%
!! AAAGGTGTTGAAAACTATGA+TGG + chr7_1:70680558-70680577 Msa1034950:CDS 30.0%
!! AAGGTGTTGAAAACTATGAT+GGG + chr7_1:70680559-70680578 Msa1034950:CDS 30.0%
GTTATGTGATAACATTCTCA+AGG - chr7_1:70680667-70680686 None:intergenic 30.0%
!! TATCACATAACTCTAAAACG+AGG + chr7_1:70680676-70680695 Msa1034950:CDS 30.0%
AATGAGGATGCTCAATATTA+TGG + chr7_1:70680750-70680769 Msa1034950:CDS 30.0%
CATTTATGATTCTAATGACC+AGG + chr7_1:70680782-70680801 Msa1034950:intron 30.0%
AAGTTAACCTGTTATATACC+TGG - chr7_1:70680803-70680822 None:intergenic 30.0%
TAGGAGACAAAATTGCATTT+AGG - chr7_1:70680841-70680860 None:intergenic 30.0%
AATTGCGAATCAGCAAAATT+AGG - chr7_1:70680860-70680879 None:intergenic 30.0%
ATTCTGACCTTATCAATGTT+TGG - chr7_1:70681119-70681138 None:intergenic 30.0%
TAACTGCATGGAAATGAATA+GGG - chr7_1:70681336-70681355 None:intergenic 30.0%
TTAACTGCATGGAAATGAAT+AGG - chr7_1:70681337-70681356 None:intergenic 30.0%
ACTAATCATGATTAACTGCA+TGG - chr7_1:70681348-70681367 None:intergenic 30.0%
!!! TTGAATTTGGTTGGTTTTGT+TGG - chr7_1:70679472-70679491 None:intergenic 30.0%
AACAAAACCAACCAAATTCA+AGG + chr7_1:70679471-70679490 Msa1034950:CDS 30.0%
! ATCTACCTTTAGAGAATTCA+TGG + chr7_1:70679562-70679581 Msa1034950:intron 30.0%
TATAGAATGGATCAACACAA+AGG + chr7_1:70679668-70679687 Msa1034950:CDS 30.0%
TACTACAATACCATTTCCAA+AGG - chr7_1:70679762-70679781 None:intergenic 30.0%
! GCTAGTTCAATGTTTCTTTT+GGG + chr7_1:70679859-70679878 Msa1034950:intron 30.0%
! CTAGTTCAATGTTTCTTTTG+GGG + chr7_1:70679860-70679879 Msa1034950:intron 30.0%
! TAGTTCAATGTTTCTTTTGG+GGG + chr7_1:70679861-70679880 Msa1034950:intron 30.0%
AAGTTATTTATGTACAAGGG+AGG + chr7_1:70680303-70680322 Msa1034950:intron 30.0%
GATTCAAATCATGAGATAGT+AGG + chr7_1:70680391-70680410 Msa1034950:intron 30.0%
CTAATGTGATTCATATTGCT+AGG - chr7_1:70680476-70680495 None:intergenic 30.0%
!! AAAGGTGTTGAAAACTATGA+TGG + chr7_1:70680558-70680577 Msa1034950:CDS 30.0%
!! AAGGTGTTGAAAACTATGAT+GGG + chr7_1:70680559-70680578 Msa1034950:CDS 30.0%
GTTATGTGATAACATTCTCA+AGG - chr7_1:70680667-70680686 None:intergenic 30.0%
!! TATCACATAACTCTAAAACG+AGG + chr7_1:70680676-70680695 Msa1034950:CDS 30.0%
AATGAGGATGCTCAATATTA+TGG + chr7_1:70680750-70680769 Msa1034950:CDS 30.0%
CATTTATGATTCTAATGACC+AGG + chr7_1:70680782-70680801 Msa1034950:intron 30.0%
AAGTTAACCTGTTATATACC+TGG - chr7_1:70680803-70680822 None:intergenic 30.0%
TAGGAGACAAAATTGCATTT+AGG - chr7_1:70680841-70680860 None:intergenic 30.0%
AATTGCGAATCAGCAAAATT+AGG - chr7_1:70680860-70680879 None:intergenic 30.0%
ATTCTGACCTTATCAATGTT+TGG - chr7_1:70681119-70681138 None:intergenic 30.0%
TAACTGCATGGAAATGAATA+GGG - chr7_1:70681336-70681355 None:intergenic 30.0%
TTAACTGCATGGAAATGAAT+AGG - chr7_1:70681337-70681356 None:intergenic 30.0%
ACTAATCATGATTAACTGCA+TGG - chr7_1:70681348-70681367 None:intergenic 30.0%
AAACGAAGCAACCTTGAATT+TGG - chr7_1:70679485-70679504 None:intergenic 35.0%
TCAAGTTTCAAACAAGCTGA+AGG + chr7_1:70679509-70679528 Msa1034950:CDS 35.0%
ATGGTCCATGAATTCTCTAA+AGG - chr7_1:70679570-70679589 None:intergenic 35.0%
!!! ACCAATCTTTTAAGACAGAG+TGG + chr7_1:70679698-70679717 Msa1034950:CDS 35.0%
ACCACTCTGTCTTAAAAGAT+TGG - chr7_1:70679702-70679721 None:intergenic 35.0%
AAAGGAGATGATGTTGTTGT+TGG - chr7_1:70679744-70679763 None:intergenic 35.0%
AACAACAACATCATCTCCTT+TGG + chr7_1:70679743-70679762 Msa1034950:CDS 35.0%
! AACATCATCTCCTTTGGAAA+TGG + chr7_1:70679749-70679768 Msa1034950:CDS 35.0%
!! GGCTAGTTCAATGTTTCTTT+TGG + chr7_1:70679858-70679877 Msa1034950:intron 35.0%
CTAATTCTAACGCTATTCGT+TGG - chr7_1:70680194-70680213 None:intergenic 35.0%
CTATGCTTGTTTAGCATTTG+TGG - chr7_1:70680425-70680444 None:intergenic 35.0%
CACAAATGCTAAACAAGCAT+AGG + chr7_1:70680423-70680442 Msa1034950:intron 35.0%
AAATGCTAAACAAGCATAGG+TGG + chr7_1:70680426-70680445 Msa1034950:intron 35.0%
!! AGGTGTTGAAAACTATGATG+GGG + chr7_1:70680560-70680579 Msa1034950:CDS 35.0%
GATAACATTCTCAAGGAAGA+AGG - chr7_1:70680660-70680679 None:intergenic 35.0%
CTAATGACCAGGTATATAAC+AGG + chr7_1:70680793-70680812 Msa1034950:intron 35.0%
TTTGATGTTACTCAGAACGT+AGG + chr7_1:70680879-70680898 Msa1034950:intron 35.0%
TTGATGTTACTCAGAACGTA+GGG + chr7_1:70680880-70680899 Msa1034950:intron 35.0%
ACGAATGAGAAAATTGCAAG+AGG + chr7_1:70681088-70681107 Msa1034950:CDS 35.0%
GGTTGTTCCAAACATTGATA+AGG + chr7_1:70681109-70681128 Msa1034950:CDS 35.0%
CACATCAGAAATGTTAGACT+TGG + chr7_1:70681235-70681254 Msa1034950:CDS 35.0%
AACTGCATGGAAATGAATAG+GGG - chr7_1:70681335-70681354 None:intergenic 35.0%
AAACGAAGCAACCTTGAATT+TGG - chr7_1:70679485-70679504 None:intergenic 35.0%
TCAAGTTTCAAACAAGCTGA+AGG + chr7_1:70679509-70679528 Msa1034950:CDS 35.0%
ATGGTCCATGAATTCTCTAA+AGG - chr7_1:70679570-70679589 None:intergenic 35.0%
!!! ACCAATCTTTTAAGACAGAG+TGG + chr7_1:70679698-70679717 Msa1034950:CDS 35.0%
ACCACTCTGTCTTAAAAGAT+TGG - chr7_1:70679702-70679721 None:intergenic 35.0%
AAAGGAGATGATGTTGTTGT+TGG - chr7_1:70679744-70679763 None:intergenic 35.0%
AACAACAACATCATCTCCTT+TGG + chr7_1:70679743-70679762 Msa1034950:CDS 35.0%
! AACATCATCTCCTTTGGAAA+TGG + chr7_1:70679749-70679768 Msa1034950:CDS 35.0%
!! GGCTAGTTCAATGTTTCTTT+TGG + chr7_1:70679858-70679877 Msa1034950:intron 35.0%
CTAATTCTAACGCTATTCGT+TGG - chr7_1:70680194-70680213 None:intergenic 35.0%
CTATGCTTGTTTAGCATTTG+TGG - chr7_1:70680425-70680444 None:intergenic 35.0%
CACAAATGCTAAACAAGCAT+AGG + chr7_1:70680423-70680442 Msa1034950:intron 35.0%
AAATGCTAAACAAGCATAGG+TGG + chr7_1:70680426-70680445 Msa1034950:intron 35.0%
!! AGGTGTTGAAAACTATGATG+GGG + chr7_1:70680560-70680579 Msa1034950:CDS 35.0%
GATAACATTCTCAAGGAAGA+AGG - chr7_1:70680660-70680679 None:intergenic 35.0%
CTAATGACCAGGTATATAAC+AGG + chr7_1:70680793-70680812 Msa1034950:intron 35.0%
TTTGATGTTACTCAGAACGT+AGG + chr7_1:70680879-70680898 Msa1034950:intron 35.0%
TTGATGTTACTCAGAACGTA+GGG + chr7_1:70680880-70680899 Msa1034950:intron 35.0%
ACGAATGAGAAAATTGCAAG+AGG + chr7_1:70681088-70681107 Msa1034950:CDS 35.0%
GGTTGTTCCAAACATTGATA+AGG + chr7_1:70681109-70681128 Msa1034950:CDS 35.0%
CACATCAGAAATGTTAGACT+TGG + chr7_1:70681235-70681254 Msa1034950:CDS 35.0%
AACTGCATGGAAATGAATAG+GGG - chr7_1:70681335-70681354 None:intergenic 35.0%
GAAGCAACCTTGAATTTGGT+TGG - chr7_1:70679481-70679500 None:intergenic 40.0%
GAAGGTTGTGCTACAAATTC+TGG + chr7_1:70679527-70679546 Msa1034950:CDS 40.0%
AAGACACATGAATTCTCAGC+AGG + chr7_1:70679643-70679662 Msa1034950:CDS 40.0%
AGACACATGAATTCTCAGCA+GGG + chr7_1:70679644-70679663 Msa1034950:CDS 40.0%
TTCTCAGCAGGGTTATAGAA+TGG + chr7_1:70679655-70679674 Msa1034950:CDS 40.0%
GTGAATATAGTGGTCAGCTA+AGG + chr7_1:70679962-70679981 Msa1034950:intron 40.0%
TATAGTGGTCAGCTAAGGTT+TGG + chr7_1:70679967-70679986 Msa1034950:intron 40.0%
GCAGGGTATGAATCTATGAA+AGG + chr7_1:70680540-70680559 Msa1034950:intron 40.0%
!! AACTCTAAAACGAGGAGTGA+TGG + chr7_1:70680684-70680703 Msa1034950:CDS 40.0%
TGATGTTACTCAGAACGTAG+GGG + chr7_1:70680881-70680900 Msa1034950:intron 40.0%
GAAGCAACCTTGAATTTGGT+TGG - chr7_1:70679481-70679500 None:intergenic 40.0%
GAAGGTTGTGCTACAAATTC+TGG + chr7_1:70679527-70679546 Msa1034950:CDS 40.0%
AAGACACATGAATTCTCAGC+AGG + chr7_1:70679643-70679662 Msa1034950:CDS 40.0%
AGACACATGAATTCTCAGCA+GGG + chr7_1:70679644-70679663 Msa1034950:CDS 40.0%
TTCTCAGCAGGGTTATAGAA+TGG + chr7_1:70679655-70679674 Msa1034950:CDS 40.0%
GTGAATATAGTGGTCAGCTA+AGG + chr7_1:70679962-70679981 Msa1034950:intron 40.0%
TATAGTGGTCAGCTAAGGTT+TGG + chr7_1:70679967-70679986 Msa1034950:intron 40.0%
GCAGGGTATGAATCTATGAA+AGG + chr7_1:70680540-70680559 Msa1034950:intron 40.0%
!! AACTCTAAAACGAGGAGTGA+TGG + chr7_1:70680684-70680703 Msa1034950:CDS 40.0%
TGATGTTACTCAGAACGTAG+GGG + chr7_1:70680881-70680900 Msa1034950:intron 40.0%
GTTGGAGAAATGACCAGCAT+GGG - chr7_1:70679726-70679745 None:intergenic 45.0%
TGTTGGAGAAATGACCAGCA+TGG - chr7_1:70679727-70679746 None:intergenic 45.0%
CTCAAGGAAGAAGGACTTCT+TGG - chr7_1:70680651-70680670 None:intergenic 45.0%
AAAACGAGGAGTGATGGCAT+TGG + chr7_1:70680690-70680709 Msa1034950:CDS 45.0%
CTCCTTGTCTTCGATCATCA+CGG - chr7_1:70680725-70680744 None:intergenic 45.0%
AAGACAAGGAGGTAGCAATG+AGG + chr7_1:70680734-70680753 Msa1034950:CDS 45.0%
TCGGAACAGAATCTGGAAAC+TGG - chr7_1:70680989-70681008 None:intergenic 45.0%
TTCTTCTTACCCTTTCGGCA+AGG - chr7_1:70681055-70681074 None:intergenic 45.0%
CCGAGTTCTTCTTACCCTTT+CGG - chr7_1:70681060-70681079 None:intergenic 45.0%
CCGAAAGGGTAAGAAGAACT+CGG + chr7_1:70681057-70681076 Msa1034950:CDS 45.0%
GTTGGAGAAATGACCAGCAT+GGG - chr7_1:70679726-70679745 None:intergenic 45.0%
TGTTGGAGAAATGACCAGCA+TGG - chr7_1:70679727-70679746 None:intergenic 45.0%
CTCAAGGAAGAAGGACTTCT+TGG - chr7_1:70680651-70680670 None:intergenic 45.0%
AAAACGAGGAGTGATGGCAT+TGG + chr7_1:70680690-70680709 Msa1034950:CDS 45.0%
CTCCTTGTCTTCGATCATCA+CGG - chr7_1:70680725-70680744 None:intergenic 45.0%
AAGACAAGGAGGTAGCAATG+AGG + chr7_1:70680734-70680753 Msa1034950:CDS 45.0%
TCGGAACAGAATCTGGAAAC+TGG - chr7_1:70680989-70681008 None:intergenic 45.0%
TTCTTCTTACCCTTTCGGCA+AGG - chr7_1:70681055-70681074 None:intergenic 45.0%
CCGAGTTCTTCTTACCCTTT+CGG - chr7_1:70681060-70681079 None:intergenic 45.0%
CCGAAAGGGTAAGAAGAACT+CGG + chr7_1:70681057-70681076 Msa1034950:CDS 45.0%
GATGGGGTGAATGACAGTGA+TGG + chr7_1:70680576-70680595 Msa1034950:CDS 50.0%
AGCCGTGATGATCGAAGACA+AGG + chr7_1:70680720-70680739 Msa1034950:CDS 50.0%
CGTGATGATCGAAGACAAGG+AGG + chr7_1:70680723-70680742 Msa1034950:CDS 50.0%
ATGCTGCTCGGAACAGAATC+TGG - chr7_1:70680996-70681015 None:intergenic 50.0%
CTCTTTGCTCTGATGCTGCT+CGG - chr7_1:70681008-70681027 None:intergenic 50.0%
AGCAGCATCAGAGCAAAGAG+AGG + chr7_1:70681008-70681027 Msa1034950:CDS 50.0%
ATCCTAGAAGCCTTGCCGAA+AGG + chr7_1:70681042-70681061 Msa1034950:CDS 50.0%
TCCTAGAAGCCTTGCCGAAA+GGG + chr7_1:70681043-70681062 Msa1034950:CDS 50.0%
GATGGGGTGAATGACAGTGA+TGG + chr7_1:70680576-70680595 Msa1034950:CDS 50.0%
AGCCGTGATGATCGAAGACA+AGG + chr7_1:70680720-70680739 Msa1034950:CDS 50.0%
CGTGATGATCGAAGACAAGG+AGG + chr7_1:70680723-70680742 Msa1034950:CDS 50.0%
ATGCTGCTCGGAACAGAATC+TGG - chr7_1:70680996-70681015 None:intergenic 50.0%
CTCTTTGCTCTGATGCTGCT+CGG - chr7_1:70681008-70681027 None:intergenic 50.0%
AGCAGCATCAGAGCAAAGAG+AGG + chr7_1:70681008-70681027 Msa1034950:CDS 50.0%
ATCCTAGAAGCCTTGCCGAA+AGG + chr7_1:70681042-70681061 Msa1034950:CDS 50.0%
TCCTAGAAGCCTTGCCGAAA+GGG + chr7_1:70681043-70681062 Msa1034950:CDS 50.0%
AGACAGAGTGGTTCCCATGC+TGG + chr7_1:70679710-70679729 Msa1034950:CDS 55.0%
ACCCTTTCGGCAAGGCTTCT+AGG - chr7_1:70681047-70681066 None:intergenic 55.0%
AGACAGAGTGGTTCCCATGC+TGG + chr7_1:70679710-70679729 Msa1034950:CDS 55.0%
ACCCTTTCGGCAAGGCTTCT+AGG - chr7_1:70681047-70681066 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 70679440 70681455 70679440 ID=Msa1034950;Name=Msa1034950
chr7_1 mRNA 70679440 70681455 70679440 ID=Msa1034950-mRNA-1;Parent=Msa1034950;Name=Msa1034950-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|0.6|0.33|6|0|261
chr7_1 exon 70679440 70679548 70679440 ID=Msa1034950-mRNA-1:exon:16914;Parent=Msa1034950-mRNA-1
chr7_1 exon 70679609 70679770 70679609 ID=Msa1034950-mRNA-1:exon:16915;Parent=Msa1034950-mRNA-1
chr7_1 exon 70680544 70680771 70680544 ID=Msa1034950-mRNA-1:exon:16916;Parent=Msa1034950-mRNA-1
chr7_1 exon 70680961 70681130 70680961 ID=Msa1034950-mRNA-1:exon:16917;Parent=Msa1034950-mRNA-1
chr7_1 exon 70681227 70681295 70681227 ID=Msa1034950-mRNA-1:exon:16918;Parent=Msa1034950-mRNA-1
chr7_1 exon 70681408 70681455 70681408 ID=Msa1034950-mRNA-1:exon:16919;Parent=Msa1034950-mRNA-1
chr7_1 CDS 70679440 70679548 70679440 ID=Msa1034950-mRNA-1:cds;Parent=Msa1034950-mRNA-1
chr7_1 CDS 70679609 70679770 70679609 ID=Msa1034950-mRNA-1:cds;Parent=Msa1034950-mRNA-1
chr7_1 CDS 70680544 70680771 70680544 ID=Msa1034950-mRNA-1:cds;Parent=Msa1034950-mRNA-1
chr7_1 CDS 70680961 70681130 70680961 ID=Msa1034950-mRNA-1:cds;Parent=Msa1034950-mRNA-1
chr7_1 CDS 70681227 70681295 70681227 ID=Msa1034950-mRNA-1:cds;Parent=Msa1034950-mRNA-1
chr7_1 CDS 70681408 70681455 70681408 ID=Msa1034950-mRNA-1:cds;Parent=Msa1034950-mRNA-1
Gene Sequence

>Msa1034950

ATGGATTTGAATTCTCATTATCAACAACTCCAACAAAACCAACCAAATTCAAGGTTGCTTCGTTTTCGTTCAAGTTTCAAACAAGCTGAAGGTTGTGCTACAAATTCTGGTGACAACAACAACAACGAGTCTTCATTATCTCAAAGACACATGAATTCTCAGCAGGGTTATAGAATGGATCAACACAAAGGTTTTTATACCAATCTTTTAAGACAGAGTGGTTCCCATGCTGGTCATTTCTCCAACAACAACATCATCTCCTTTGGAAATGGGTATGAATCTATGAAAGGTGTTGAAAACTATGATGGGGTGAATGACAGTGATGGTGAACTTACTCTATCTATGAACATATTGAACAATCAAATTGGCTTCTCACCAAGAAGTCCTTCTTCCTTGAGAATGTTATCACATAACTCTAAAACGAGGAGTGATGGCATTGGAACAACTAGCCGTGATGATCGAAGACAAGGAGGTAGCAATGAGGATGCTCAATATTATGAAATGTTTATTGTGGAGAATTTGGTCCAGTTTCCAGATTCTGTTCCGAGCAGCATCAGAGCAAAGAGAGGCTTTGCAACACATCCTAGAAGCCTTGCCGAAAGGGTAAGAAGAACTCGGATAAGTGAACGAATGAGAAAATTGCAAGAGGTTGTTCCAAACATTGATAAGCAAACTTGCACATCAGAAATGTTAGACTTGGCTGTAGAGTACATTAAAGATCTTCAAAAACAATTAAAGACTATGAGTGCAAAAAGAGCTAAGTGCAGATGCAGAAACAAGAAATGA

Protein sequence

>Msa1034950

MDLNSHYQQLQQNQPNSRLLRFRSSFKQAEGCATNSGDNNNNESSLSQRHMNSQQGYRMDQHKGFYTNLLRQSGSHAGHFSNNNIISFGNGYESMKGVENYDGVNDSDGELTLSMNILNNQIGFSPRSPSSLRMLSHNSKTRSDGIGTTSRDDRRQGGSNEDAQYYEMFIVENLVQFPDSVPSSIRAKRGFATHPRSLAERVRRTRISERMRKLQEVVPNIDKQTCTSEMLDLAVEYIKDLQKQLKTMSAKRAKCRCRNKK*