AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0120050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120050 MtrunA17_Chr1g0178161 95.918 196 8 0 1 196 1 196 2.06e-120 338
Msa0120050 MtrunA17_Chr1g0178191 77.041 196 43 1 1 196 1 194 2.52e-93 270
Msa0120050 MtrunA17_Chr1g0178181 80.102 196 38 1 1 196 1 195 9.05e-92 266
Msa0120050 MtrunA17_Chr2g0321671 52.857 210 83 1 2 195 10 219 1.81e-59 185
Msa0120050 MtrunA17_Chr7g0217691 45.263 190 100 1 7 196 1 186 2.62e-52 166
Msa0120050 MtrunA17_Chr4g0042551 42.197 173 100 0 23 195 44 216 2.93e-47 154
Msa0120050 MtrunA17_Chr5g0417761 40.722 194 102 2 4 196 5 186 1.15e-41 139
Msa0120050 MtrunA17_Chr4g0021111 34.615 156 87 4 37 189 7 150 3.16e-18 77.8
Msa0120050 MtrunA17_Chr2g0303151 34.167 120 73 3 73 189 69 185 1.27e-12 63.9
Msa0120050 MtrunA17_Chr3g0109681 27.564 156 96 3 42 193 49 191 3.74e-11 60.1
Msa0120050 MtrunA17_Chr8g0381001 29.114 158 99 4 42 189 30 184 5.02e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120050 AT2G36100.1 54.950 202 84 2 2 196 5 206 3.36e-68 207
Msa0120050 AT3G11550.1 60.500 200 74 1 2 196 5 204 2.83e-64 197
Msa0120050 AT2G27370.1 55.978 184 74 1 12 195 43 219 7.01e-64 197
Msa0120050 AT5G06200.1 58.586 198 77 2 2 195 5 201 1.07e-63 196
Msa0120050 AT5G15290.1 44.000 150 84 0 27 176 17 166 4.72e-44 145
Msa0120050 AT1G14160.1 40.000 165 99 0 32 196 45 209 8.61e-42 140
Msa0120050 AT1G03700.1 30.769 169 99 3 21 189 1 151 2.00e-17 76.3
Msa0120050 AT1G17200.1 26.984 189 125 5 9 193 2 181 2.42e-14 68.9
Msa0120050 AT4G03540.1 32.258 124 75 2 55 178 26 140 1.09e-13 66.2
Msa0120050 AT3G06390.1 27.820 133 91 2 38 165 37 169 5.83e-11 59.7

Find 42 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCCATTTGCAACCAATT+TGG 0.187527 1_3:+44696441 Msa0120050:CDS
GTTGGTTGTGATGTCTTCTT+TGG 0.281389 1_3:+44696530 Msa0120050:CDS
GTGATGTCTTCTTTGGCTCT+TGG 0.299534 1_3:+44696537 Msa0120050:CDS
TCTTAGAACAAAATCCATTA+TGG 0.318159 1_3:-44695374 None:intergenic
ATGATGGTTACTATGGAAAA+TGG 0.329026 1_3:-44695783 None:intergenic
TGATGTCTTCTTTGGCTCTT+GGG 0.348436 1_3:+44696538 Msa0120050:CDS
AGCAGCTGCCATGGTTTACT+TGG 0.359773 1_3:+44696389 Msa0120050:CDS
GGCATTTGTGGGTGGCTACC+TGG 0.401958 1_3:+44695749 Msa0120050:CDS
AATGTCAACCACTATTGATA+TGG 0.415102 1_3:+44695267 None:intergenic
AGGGCGAATGATGGTTACTA+TGG 0.422728 1_3:-44695790 None:intergenic
CATAACTAGCTTCAAATTGA+AGG 0.426220 1_3:-44695477 None:intergenic
ATTGGAGCCACTGCAAGGCC+TGG 0.429435 1_3:+44695331 Msa0120050:CDS
ATGGCAATCAAGACTCAAAC+TGG 0.433393 1_3:+44696418 Msa0120050:CDS
ATCTCCAAATTGGTTGCAAA+TGG 0.439108 1_3:-44696445 None:intergenic
TGTTATTGCAATGGCATTTG+TGG 0.446696 1_3:+44695737 Msa0120050:CDS
GTTATTGCAATGGCATTTGT+GGG 0.458726 1_3:+44695738 Msa0120050:CDS
TGATTCTGCCATATCAATAG+TGG 0.478795 1_3:-44695275 None:intergenic
ATCATTCGCCCTCATGCACC+TGG 0.484461 1_3:+44695801 Msa0120050:CDS
TGGTTACTATGGAAAATGGT+AGG 0.486275 1_3:-44695779 None:intergenic
TGGTGCTTCAGCAGCTGCCA+TGG 0.489524 1_3:+44696380 Msa0120050:CDS
TGAAGGAACTGAGTGAAGAA+AGG 0.493692 1_3:-44695460 None:intergenic
CCACTGCAAGGCCTGGAGGA+TGG 0.524990 1_3:+44695338 Msa0120050:CDS
TGCAGCAAGAGAAGCTGCTA+TGG 0.527344 1_3:-44695404 None:intergenic
CCATCCTCCAGGCCTTGCAG+TGG 0.532661 1_3:-44695338 None:intergenic
ATGAGGAAAAGCCTTGGTCC+AGG 0.542585 1_3:-44695819 None:intergenic
CTTTAATTGGAGCCACTGCA+AGG 0.554612 1_3:+44695326 Msa0120050:CDS
GGTTACTATGGAAAATGGTA+GGG 0.561081 1_3:-44695778 None:intergenic
AGCCTTGGTCCAGGTGCATG+AGG 0.573726 1_3:-44695810 None:intergenic
AGGTGCATGAGGGCGAATGA+TGG 0.573876 1_3:-44695799 None:intergenic
GCCCTCATGCACCTGGACCA+AGG 0.587519 1_3:+44695808 Msa0120050:CDS
TGCTGAAGCACCACTAGCAG+TGG 0.592321 1_3:-44696370 None:intergenic
AATCTGATCACTAGTTGCCA+TGG 0.596028 1_3:-44695434 None:intergenic
ATTGCAATGGCATTTGTGGG+TGG 0.596308 1_3:+44695741 Msa0120050:CDS
ATGACATTAGCCACTGCTAG+TGG 0.602800 1_3:+44696360 Msa0120050:CDS
ATGGTTTACTTGGCACACAA+TGG 0.608727 1_3:+44696399 Msa0120050:CDS
GCGATGATGAGGAAAAGCCT+TGG 0.613791 1_3:-44695825 None:intergenic
GCCTTGGTCCAGGTGCATGA+GGG 0.623258 1_3:-44695809 None:intergenic
GGAGCCACTGCAAGGCCTGG+AGG 0.665040 1_3:+44695334 Msa0120050:CDS
TTACTGTGTCTGCGATGATG+AGG 0.667059 1_3:-44695836 None:intergenic
TCTTGCTGCAACTATCACCA+TGG 0.694318 1_3:+44695417 Msa0120050:CDS
AAAATGGTAGGGATAAGACC+AGG 0.708096 1_3:-44695767 None:intergenic
ATTGTGTGCCAAGTAAACCA+TGG 0.791669 1_3:-44696397 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTATTTGTTTAAGTTAG+AGG - chr1_3:44695538-44695557 None:intergenic 15.0%
!! TAAGAATTAATTAGGAAATT+AGG - chr1_3:44695869-44695888 None:intergenic 15.0%
!! ACTCTAATTAAGAATTAATT+AGG - chr1_3:44695877-44695896 None:intergenic 15.0%
!! TCATGTAAAAAAAATTTGAA+GGG - chr1_3:44695920-44695939 None:intergenic 15.0%
!! TTCATGTAAAAAAAATTTGA+AGG - chr1_3:44695921-44695940 None:intergenic 15.0%
!! AAAAAAAATCAATAAAGCAA+TGG - chr1_3:44696026-44696045 None:intergenic 15.0%
!!! AGAAACTATTATTTTAAAAG+TGG + chr1_3:44696250-44696269 Msa0120050:intron 15.0%
!!! AAATTATTTGTTTAAGTTAG+AGG - chr1_3:44695538-44695557 None:intergenic 15.0%
!! TAAGAATTAATTAGGAAATT+AGG - chr1_3:44695869-44695888 None:intergenic 15.0%
!! ACTCTAATTAAGAATTAATT+AGG - chr1_3:44695877-44695896 None:intergenic 15.0%
!! TCATGTAAAAAAAATTTGAA+GGG - chr1_3:44695920-44695939 None:intergenic 15.0%
!! TTCATGTAAAAAAAATTTGA+AGG - chr1_3:44695921-44695940 None:intergenic 15.0%
!! AAAAAAAATCAATAAAGCAA+TGG - chr1_3:44696026-44696045 None:intergenic 15.0%
!!! AGAAACTATTATTTTAAAAG+TGG + chr1_3:44696250-44696269 Msa0120050:intron 15.0%
!! AATGTTTATTGTAAATATGC+AGG + chr1_3:44695709-44695728 Msa0120050:intron 20.0%
!! ATGAACATATATATTCTAGT+AGG + chr1_3:44695936-44695955 Msa0120050:intron 20.0%
!!! GTTAAGTACTTTTAAAAAAC+TGG + chr1_3:44696221-44696240 Msa0120050:intron 20.0%
!! AATGTTTATTGTAAATATGC+AGG + chr1_3:44695709-44695728 Msa0120050:intron 20.0%
!! ATGAACATATATATTCTAGT+AGG + chr1_3:44695936-44695955 Msa0120050:intron 20.0%
!!! GTTAAGTACTTTTAAAAAAC+TGG + chr1_3:44696221-44696240 Msa0120050:intron 20.0%
!! AATGAAAAAGCTGCTTTAAT+TGG + chr1_3:44695313-44695332 Msa0120050:CDS 25.0%
! TCTTAGAACAAAATCCATTA+TGG - chr1_3:44695377-44695396 None:intergenic 25.0%
!!! ATGGATTTTGTTCTAAGATT+AGG + chr1_3:44695379-44695398 Msa0120050:CDS 25.0%
! GGTCATTTGAAAATAAATAG+AGG - chr1_3:44696005-44696024 None:intergenic 25.0%
! AATGAGGAAATGAACTATTA+AGG + chr1_3:44696136-44696155 Msa0120050:intron 25.0%
!! AATGAAAAAGCTGCTTTAAT+TGG + chr1_3:44695313-44695332 Msa0120050:CDS 25.0%
! TCTTAGAACAAAATCCATTA+TGG - chr1_3:44695377-44695396 None:intergenic 25.0%
!!! ATGGATTTTGTTCTAAGATT+AGG + chr1_3:44695379-44695398 Msa0120050:CDS 25.0%
! GGTCATTTGAAAATAAATAG+AGG - chr1_3:44696005-44696024 None:intergenic 25.0%
! AATGAGGAAATGAACTATTA+AGG + chr1_3:44696136-44696155 Msa0120050:intron 25.0%
! CATAACTAGCTTCAAATTGA+AGG - chr1_3:44695480-44695499 None:intergenic 30.0%
! AATACACCTAGGTTTTACAA+TGG - chr1_3:44695572-44695591 None:intergenic 30.0%
TGGACTAAATAAATACACCT+AGG - chr1_3:44695583-44695602 None:intergenic 30.0%
! GTGTAGTTCAAATTTTGTGT+TGG - chr1_3:44695603-44695622 None:intergenic 30.0%
!!! CAGGTTTTTTGTTATTGCAA+TGG + chr1_3:44695728-44695747 Msa0120050:intron 30.0%
ATGATGGTTACTATGGAAAA+TGG - chr1_3:44695786-44695805 None:intergenic 30.0%
ATTACTCCTTGTGTTTCTTT+CGG + chr1_3:44695979-44695998 Msa0120050:intron 30.0%
GAAGATAAATTGCTACAATG+AGG + chr1_3:44696120-44696139 Msa0120050:intron 30.0%
TAATGTCATAAACACCTACA+CGG - chr1_3:44696349-44696368 None:intergenic 30.0%
!!! TATTGCTGTGGTTGTTTTAA+TGG + chr1_3:44696506-44696525 Msa0120050:CDS 30.0%
! CATAACTAGCTTCAAATTGA+AGG - chr1_3:44695480-44695499 None:intergenic 30.0%
! AATACACCTAGGTTTTACAA+TGG - chr1_3:44695572-44695591 None:intergenic 30.0%
TGGACTAAATAAATACACCT+AGG - chr1_3:44695583-44695602 None:intergenic 30.0%
! GTGTAGTTCAAATTTTGTGT+TGG - chr1_3:44695603-44695622 None:intergenic 30.0%
!!! CAGGTTTTTTGTTATTGCAA+TGG + chr1_3:44695728-44695747 Msa0120050:intron 30.0%
ATGATGGTTACTATGGAAAA+TGG - chr1_3:44695786-44695805 None:intergenic 30.0%
ATTACTCCTTGTGTTTCTTT+CGG + chr1_3:44695979-44695998 Msa0120050:intron 30.0%
GAAGATAAATTGCTACAATG+AGG + chr1_3:44696120-44696139 Msa0120050:intron 30.0%
TAATGTCATAAACACCTACA+CGG - chr1_3:44696349-44696368 None:intergenic 30.0%
!!! TATTGCTGTGGTTGTTTTAA+TGG + chr1_3:44696506-44696525 Msa0120050:CDS 30.0%
TGATTCTGCCATATCAATAG+TGG - chr1_3:44695278-44695297 None:intergenic 35.0%
! GAAAAAAGGCATAGCCATAA+TGG + chr1_3:44695360-44695379 Msa0120050:CDS 35.0%
GAGGTTTAAATGTGACATAC+TGG - chr1_3:44695519-44695538 None:intergenic 35.0%
TGTTATTGCAATGGCATTTG+TGG + chr1_3:44695737-44695756 Msa0120050:CDS 35.0%
GTTATTGCAATGGCATTTGT+GGG + chr1_3:44695738-44695757 Msa0120050:CDS 35.0%
GGTTACTATGGAAAATGGTA+GGG - chr1_3:44695781-44695800 None:intergenic 35.0%
TGGTTACTATGGAAAATGGT+AGG - chr1_3:44695782-44695801 None:intergenic 35.0%
! AAACTCAAACTTTTCCGTGT+AGG + chr1_3:44696332-44696351 Msa0120050:intron 35.0%
ATCTCCAAATTGGTTGCAAA+TGG - chr1_3:44696448-44696467 None:intergenic 35.0%
GAGCACAAAAATCTCCAAAT+TGG - chr1_3:44696458-44696477 None:intergenic 35.0%
! GATTTTTGTGCTCAAACAAG+TGG + chr1_3:44696465-44696484 Msa0120050:CDS 35.0%
!! TGTGTCATGTTTTATTGCTG+TGG + chr1_3:44696494-44696513 Msa0120050:CDS 35.0%
!!! TGTGGTTGTTTTAATGGTGT+TGG + chr1_3:44696512-44696531 Msa0120050:CDS 35.0%
TGATTCTGCCATATCAATAG+TGG - chr1_3:44695278-44695297 None:intergenic 35.0%
! GAAAAAAGGCATAGCCATAA+TGG + chr1_3:44695360-44695379 Msa0120050:CDS 35.0%
GAGGTTTAAATGTGACATAC+TGG - chr1_3:44695519-44695538 None:intergenic 35.0%
TGTTATTGCAATGGCATTTG+TGG + chr1_3:44695737-44695756 Msa0120050:CDS 35.0%
GTTATTGCAATGGCATTTGT+GGG + chr1_3:44695738-44695757 Msa0120050:CDS 35.0%
GGTTACTATGGAAAATGGTA+GGG - chr1_3:44695781-44695800 None:intergenic 35.0%
TGGTTACTATGGAAAATGGT+AGG - chr1_3:44695782-44695801 None:intergenic 35.0%
! AAACTCAAACTTTTCCGTGT+AGG + chr1_3:44696332-44696351 Msa0120050:intron 35.0%
ATCTCCAAATTGGTTGCAAA+TGG - chr1_3:44696448-44696467 None:intergenic 35.0%
GAGCACAAAAATCTCCAAAT+TGG - chr1_3:44696458-44696477 None:intergenic 35.0%
! GATTTTTGTGCTCAAACAAG+TGG + chr1_3:44696465-44696484 Msa0120050:CDS 35.0%
!! TGTGTCATGTTTTATTGCTG+TGG + chr1_3:44696494-44696513 Msa0120050:CDS 35.0%
!!! TGTGGTTGTTTTAATGGTGT+TGG + chr1_3:44696512-44696531 Msa0120050:CDS 35.0%
AATCTGATCACTAGTTGCCA+TGG - chr1_3:44695437-44695456 None:intergenic 40.0%
TGAAGGAACTGAGTGAAGAA+AGG - chr1_3:44695463-44695482 None:intergenic 40.0%
! CACCTAGGTTTTACAATGGA+GGG - chr1_3:44695568-44695587 None:intergenic 40.0%
! ACACCTAGGTTTTACAATGG+AGG - chr1_3:44695569-44695588 None:intergenic 40.0%
AAAATGGTAGGGATAAGACC+AGG - chr1_3:44695770-44695789 None:intergenic 40.0%
ATTGTGTGCCAAGTAAACCA+TGG - chr1_3:44696400-44696419 None:intergenic 40.0%
ATGGTTTACTTGGCACACAA+TGG + chr1_3:44696399-44696418 Msa0120050:CDS 40.0%
ATGGCAATCAAGACTCAAAC+TGG + chr1_3:44696418-44696437 Msa0120050:CDS 40.0%
! CTTGCCATTTGCAACCAATT+TGG + chr1_3:44696441-44696460 Msa0120050:CDS 40.0%
GTTGGTTGTGATGTCTTCTT+TGG + chr1_3:44696530-44696549 Msa0120050:CDS 40.0%
!! TGATGTCTTCTTTGGCTCTT+GGG + chr1_3:44696538-44696557 Msa0120050:CDS 40.0%
AATCTGATCACTAGTTGCCA+TGG - chr1_3:44695437-44695456 None:intergenic 40.0%
TGAAGGAACTGAGTGAAGAA+AGG - chr1_3:44695463-44695482 None:intergenic 40.0%
! CACCTAGGTTTTACAATGGA+GGG - chr1_3:44695568-44695587 None:intergenic 40.0%
! ACACCTAGGTTTTACAATGG+AGG - chr1_3:44695569-44695588 None:intergenic 40.0%
AAAATGGTAGGGATAAGACC+AGG - chr1_3:44695770-44695789 None:intergenic 40.0%
ATTGTGTGCCAAGTAAACCA+TGG - chr1_3:44696400-44696419 None:intergenic 40.0%
ATGGTTTACTTGGCACACAA+TGG + chr1_3:44696399-44696418 Msa0120050:CDS 40.0%
ATGGCAATCAAGACTCAAAC+TGG + chr1_3:44696418-44696437 Msa0120050:CDS 40.0%
! CTTGCCATTTGCAACCAATT+TGG + chr1_3:44696441-44696460 Msa0120050:CDS 40.0%
GTTGGTTGTGATGTCTTCTT+TGG + chr1_3:44696530-44696549 Msa0120050:CDS 40.0%
!! TGATGTCTTCTTTGGCTCTT+GGG + chr1_3:44696538-44696557 Msa0120050:CDS 40.0%
CTTTAATTGGAGCCACTGCA+AGG + chr1_3:44695326-44695345 Msa0120050:CDS 45.0%
!!! ATGCCTTTTTTCCATCCTCC+AGG - chr1_3:44695352-44695371 None:intergenic 45.0%
TCTTGCTGCAACTATCACCA+TGG + chr1_3:44695417-44695436 Msa0120050:CDS 45.0%
CTCCCTCCATTGTAAAACCT+AGG + chr1_3:44695563-44695582 Msa0120050:intron 45.0%
ATTGCAATGGCATTTGTGGG+TGG + chr1_3:44695741-44695760 Msa0120050:CDS 45.0%
AGGGCGAATGATGGTTACTA+TGG - chr1_3:44695793-44695812 None:intergenic 45.0%
TTACTGTGTCTGCGATGATG+AGG - chr1_3:44695839-44695858 None:intergenic 45.0%
TAGAGGCCGAAAGAAACACA+AGG - chr1_3:44695988-44696007 None:intergenic 45.0%
ATGACATTAGCCACTGCTAG+TGG + chr1_3:44696360-44696379 Msa0120050:CDS 45.0%
!! GTGATGTCTTCTTTGGCTCT+TGG + chr1_3:44696537-44696556 Msa0120050:CDS 45.0%
CTTTAATTGGAGCCACTGCA+AGG + chr1_3:44695326-44695345 Msa0120050:CDS 45.0%
!!! ATGCCTTTTTTCCATCCTCC+AGG - chr1_3:44695352-44695371 None:intergenic 45.0%
TCTTGCTGCAACTATCACCA+TGG + chr1_3:44695417-44695436 Msa0120050:CDS 45.0%
CTCCCTCCATTGTAAAACCT+AGG + chr1_3:44695563-44695582 Msa0120050:intron 45.0%
ATTGCAATGGCATTTGTGGG+TGG + chr1_3:44695741-44695760 Msa0120050:CDS 45.0%
AGGGCGAATGATGGTTACTA+TGG - chr1_3:44695793-44695812 None:intergenic 45.0%
TTACTGTGTCTGCGATGATG+AGG - chr1_3:44695839-44695858 None:intergenic 45.0%
TAGAGGCCGAAAGAAACACA+AGG - chr1_3:44695988-44696007 None:intergenic 45.0%
ATGACATTAGCCACTGCTAG+TGG + chr1_3:44696360-44696379 Msa0120050:CDS 45.0%
!! GTGATGTCTTCTTTGGCTCT+TGG + chr1_3:44696537-44696556 Msa0120050:CDS 45.0%
AGGCCTGGAGGATGGAAAAA+AGG + chr1_3:44695346-44695365 Msa0120050:CDS 50.0%
TGCAGCAAGAGAAGCTGCTA+TGG - chr1_3:44695407-44695426 None:intergenic 50.0%
ATGAGGAAAAGCCTTGGTCC+AGG - chr1_3:44695822-44695841 None:intergenic 50.0%
GCGATGATGAGGAAAAGCCT+TGG - chr1_3:44695828-44695847 None:intergenic 50.0%
AGCAGCTGCCATGGTTTACT+TGG + chr1_3:44696389-44696408 Msa0120050:CDS 50.0%
AGGCCTGGAGGATGGAAAAA+AGG + chr1_3:44695346-44695365 Msa0120050:CDS 50.0%
TGCAGCAAGAGAAGCTGCTA+TGG - chr1_3:44695407-44695426 None:intergenic 50.0%
ATGAGGAAAAGCCTTGGTCC+AGG - chr1_3:44695822-44695841 None:intergenic 50.0%
GCGATGATGAGGAAAAGCCT+TGG - chr1_3:44695828-44695847 None:intergenic 50.0%
AGCAGCTGCCATGGTTTACT+TGG + chr1_3:44696389-44696408 Msa0120050:CDS 50.0%
AGGTGCATGAGGGCGAATGA+TGG - chr1_3:44695802-44695821 None:intergenic 55.0%
ATCATTCGCCCTCATGCACC+TGG + chr1_3:44695801-44695820 Msa0120050:CDS 55.0%
! TGCTGAAGCACCACTAGCAG+TGG - chr1_3:44696373-44696392 None:intergenic 55.0%
AGGTGCATGAGGGCGAATGA+TGG - chr1_3:44695802-44695821 None:intergenic 55.0%
ATCATTCGCCCTCATGCACC+TGG + chr1_3:44695801-44695820 Msa0120050:CDS 55.0%
! TGCTGAAGCACCACTAGCAG+TGG - chr1_3:44696373-44696392 None:intergenic 55.0%
ATTGGAGCCACTGCAAGGCC+TGG + chr1_3:44695331-44695350 Msa0120050:CDS 60.0%
GGCATTTGTGGGTGGCTACC+TGG + chr1_3:44695749-44695768 Msa0120050:CDS 60.0%
GCCTTGGTCCAGGTGCATGA+GGG - chr1_3:44695812-44695831 None:intergenic 60.0%
AGCCTTGGTCCAGGTGCATG+AGG - chr1_3:44695813-44695832 None:intergenic 60.0%
TGGTGCTTCAGCAGCTGCCA+TGG + chr1_3:44696380-44696399 Msa0120050:CDS 60.0%
ATTGGAGCCACTGCAAGGCC+TGG + chr1_3:44695331-44695350 Msa0120050:CDS 60.0%
GGCATTTGTGGGTGGCTACC+TGG + chr1_3:44695749-44695768 Msa0120050:CDS 60.0%
GCCTTGGTCCAGGTGCATGA+GGG - chr1_3:44695812-44695831 None:intergenic 60.0%
AGCCTTGGTCCAGGTGCATG+AGG - chr1_3:44695813-44695832 None:intergenic 60.0%
TGGTGCTTCAGCAGCTGCCA+TGG + chr1_3:44696380-44696399 Msa0120050:CDS 60.0%
CCATCCTCCAGGCCTTGCAG+TGG - chr1_3:44695341-44695360 None:intergenic 65.0%
CCACTGCAAGGCCTGGAGGA+TGG + chr1_3:44695338-44695357 Msa0120050:CDS 65.0%
GCCCTCATGCACCTGGACCA+AGG + chr1_3:44695808-44695827 Msa0120050:CDS 65.0%
CCATCCTCCAGGCCTTGCAG+TGG - chr1_3:44695341-44695360 None:intergenic 65.0%
CCACTGCAAGGCCTGGAGGA+TGG + chr1_3:44695338-44695357 Msa0120050:CDS 65.0%
GCCCTCATGCACCTGGACCA+AGG + chr1_3:44695808-44695827 Msa0120050:CDS 65.0%
GGAGCCACTGCAAGGCCTGG+AGG + chr1_3:44695334-44695353 Msa0120050:CDS 70.0%
GGAGCCACTGCAAGGCCTGG+AGG + chr1_3:44695334-44695353 Msa0120050:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 44695268 44696569 44695268 ID=Msa0120050;Name=Msa0120050
chr1_3 mRNA 44695268 44696569 44695268 ID=Msa0120050-mRNA-1;Parent=Msa0120050;Name=Msa0120050-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|196
chr1_3 exon 44695268 44695518 44695268 ID=Msa0120050-mRNA-1:exon:13323;Parent=Msa0120050-mRNA-1
chr1_3 exon 44695731 44695854 44695731 ID=Msa0120050-mRNA-1:exon:13324;Parent=Msa0120050-mRNA-1
chr1_3 exon 44696354 44696569 44696354 ID=Msa0120050-mRNA-1:exon:13325;Parent=Msa0120050-mRNA-1
chr1_3 CDS 44695268 44695518 44695268 ID=Msa0120050-mRNA-1:cds;Parent=Msa0120050-mRNA-1
chr1_3 CDS 44695731 44695854 44695731 ID=Msa0120050-mRNA-1:cds;Parent=Msa0120050-mRNA-1
chr1_3 CDS 44696354 44696569 44696354 ID=Msa0120050-mRNA-1:cds;Parent=Msa0120050-mRNA-1
Gene Sequence

>Msa0120050

ATGTCAACCACTATTGATATGGCAGAATCAAGCAACGCTCATGTTAATGAAAAAGCTGCTTTAATTGGAGCCACTGCAAGGCCTGGAGGATGGAAAAAAGGCATAGCCATAATGGATTTTGTTCTAAGATTAGGTGCCATAGCAGCTTCTCTTGCTGCAACTATCACCATGGCAACTAGTGATCAGATTCTTCCTTTCTTCACTCAGTTCCTTCAATTTGAAGCTAGTTATGATAGCTTTTCAACTTTCCAGTTTTTTGTTATTGCAATGGCATTTGTGGGTGGCTACCTGGTCTTATCCCTACCATTTTCCATAGTAACCATCATTCGCCCTCATGCACCTGGACCAAGGCTTTTCCTCATCATCGCAGACACAGTGTTTATGACATTAGCCACTGCTAGTGGTGCTTCAGCAGCTGCCATGGTTTACTTGGCACACAATGGCAATCAAGACTCAAACTGGCTTGCCATTTGCAACCAATTTGGAGATTTTTGTGCTCAAACAAGTGGAGCAGTTGTGTCATGTTTTATTGCTGTGGTTGTTTTAATGGTGTTGGTTGTGATGTCTTCTTTGGCTCTTGGGAAGCACTGA

Protein sequence

>Msa0120050

MSTTIDMAESSNAHVNEKAALIGATARPGGWKKGIAIMDFVLRLGAIAASLAATITMATSDQILPFFTQFLQFEASYDSFSTFQFFVIAMAFVGGYLVLSLPFSIVTIIRPHAPGPRLFLIIADTVFMTLATASGASAAAMVYLAHNGNQDSNWLAICNQFGDFCAQTSGAVVSCFIAVVVLMVLVVMSSLALGKH*