AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0955080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0955080 MtrunA17_Chr6g0471231 88.571 140 1 1 1 125 1 140 1.29e-87 251
Msa0955080 MtrunA17_Chr1g0160201 31.618 136 63 6 5 125 27 147 3.74e-14 64.7
Msa0955080 MtrunA17_Chr3g0124411 33.824 136 60 5 5 125 32 152 5.88e-14 64.3
Msa0955080 MtrunA17_Chr3g0115421 33.588 131 57 5 11 125 33 149 9.74e-14 63.5
Msa0955080 MtrunA17_Chr3g0145621 31.469 143 62 7 5 125 28 156 6.94e-13 61.6
Msa0955080 MtrunA17_Chr8g0382721 32.609 138 61 6 5 125 31 153 1.33e-12 60.8
Msa0955080 MtrunA17_Chr4g0036931 33.099 142 63 6 3 125 28 156 2.58e-12 60.1
Msa0955080 MtrunA17_Chr5g0407821 28.986 138 64 7 5 125 25 145 1.92e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0955080 AT3G48970.1 65.714 140 33 1 1 125 1 140 5.07e-60 181
Msa0955080 AT3G48970.2 66.176 136 31 1 5 125 3 138 8.39e-59 178
Msa0955080 AT3G48970.3 66.176 136 31 1 5 125 3 138 8.39e-59 178
Msa0955080 AT3G56891.1 31.373 153 71 5 4 125 17 166 1.27e-17 74.3
Msa0955080 AT3G56891.2 31.034 145 67 4 12 125 1 143 3.11e-17 72.8
Msa0955080 AT4G08570.1 35.766 137 58 6 5 125 28 150 6.12e-16 69.7
Msa0955080 AT1G71050.1 33.333 129 59 4 12 125 36 152 1.52e-14 66.2
Msa0955080 AT5G66110.3 34.286 140 60 6 5 125 21 147 1.48e-13 63.5
Msa0955080 AT5G66110.1 34.286 140 60 6 5 125 21 147 1.48e-13 63.5
Msa0955080 AT2G18196.2 31.818 132 61 5 14 125 3 125 3.76e-13 62.0
Msa0955080 AT5G66110.2 33.835 133 57 5 12 125 1 121 5.17e-13 61.2
Msa0955080 AT1G22990.1 33.577 137 60 8 5 125 31 152 1.52e-12 60.8
Msa0955080 AT2G18196.1 31.818 132 61 5 14 125 56 178 1.72e-12 61.2
Msa0955080 AT1G22990.2 33.846 130 56 7 12 125 32 147 2.03e-12 60.5
Msa0955080 AT1G06330.1 31.646 158 60 10 5 125 4 150 3.43e-12 60.1
Msa0955080 AT4G10465.1 33.813 139 66 8 5 125 53 183 4.21e-11 57.8

Find 36 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTACCAATAACTGTTTAAA+AGG 0.123298 6_3:-58884325 Msa0955080:five_prime_UTR
AAAGCTCTCTTCAAACTTAA+AGG 0.212136 6_3:-58883959 Msa0955080:intron
GAAGGAGTATGCCTCAAATA+TGG 0.262354 6_3:-58884415 Msa0955080:five_prime_UTR
ACAGACATTATTGCTTGTTT+AGG 0.316520 6_3:+58884151 None:intergenic
CACCCTTCACAATCAAGATT+TGG 0.367580 6_3:+58883998 None:intergenic
AAAATGAAGCAAAATGAGTA+TGG 0.404963 6_3:+58882959 None:intergenic
AAGGAGTATGCCTCAAATAT+GGG 0.432186 6_3:-58884414 Msa0955080:five_prime_UTR
TGAGTATGGCCAGGTAGAAA+TGG 0.434741 6_3:+58882973 None:intergenic
GTTGTGGTGTGGTCACTGTT+TGG 0.436064 6_3:+58884250 None:intergenic
GAACAAAGTGTCGTTGTTGT+TGG 0.455252 6_3:+58884277 None:intergenic
AAGATAACAGTCAGCGGCTA+TGG 0.464885 6_3:-58883057 Msa0955080:intron
TACAAAAGTGAAGCAACAAA+TGG 0.472564 6_3:-58882892 Msa0955080:CDS
GTACCAATAACTGTTTAAAA+GGG 0.475755 6_3:-58884324 Msa0955080:five_prime_UTR
TTACTAAAGTGTTCTTTGAA+AGG 0.492784 6_3:+58884300 None:intergenic
TTGAAAGCAATCAAACGTGC+AGG 0.508044 6_3:-58883015 Msa0955080:CDS
TAATGATTAACAATGTAACT+TGG 0.510139 6_3:+58882928 None:intergenic
TACATTATAGTGCAAGCATG+AGG 0.547669 6_3:+58882781 None:intergenic
AGTTGCTGTTGCATCTGATG+AGG 0.552668 6_3:-58882833 Msa0955080:CDS
ATTGTTGTAGAATATGGTTG+AGG 0.553241 6_3:-58884029 Msa0955080:intron
GAAGCAAAATGAGTATGGCC+AGG 0.561335 6_3:+58882964 None:intergenic
GAACCATGGCCATTTCTACC+TGG 0.561424 6_3:-58882982 Msa0955080:CDS
GTACCAAATCTTGATTGTGA+AGG 0.573579 6_3:-58884001 Msa0955080:CDS
TACCAAATCTTGATTGTGAA+GGG 0.580631 6_3:-58884000 Msa0955080:CDS
AAGAGAGTTGTGTTCTGTTG+TGG 0.581126 6_3:+58884234 None:intergenic
AGGAGTATGCCTCAAATATG+GGG 0.603014 6_3:-58884413 Msa0955080:five_prime_UTR
CATGATGAGAGACAAGGTGA+AGG 0.608400 6_3:-58884433 Msa0955080:five_prime_UTR
CAGGGAAAGCAGCAGAACCA+TGG 0.611728 6_3:-58882996 Msa0955080:CDS
CAGCAACTGAATAAACAGAA+GGG 0.615737 6_3:+58882848 None:intergenic
AGCAACTGAATAAACAGAAG+GGG 0.630032 6_3:+58882849 None:intergenic
ACAGCAACTGAATAAACAGA+AGG 0.630530 6_3:+58882847 None:intergenic
AGTTGTGTTCTGTTGTGGTG+TGG 0.634601 6_3:+58884239 None:intergenic
TGGCCAGGTAGAAATGGCCA+TGG 0.640241 6_3:+58882979 None:intergenic
ACATTATAGTGCAAGCATGA+GGG 0.647161 6_3:+58882782 None:intergenic
TGAAAGCAATCAAACGTGCA+GGG 0.647389 6_3:-58883014 Msa0955080:CDS
GGAGTATGCCTCAAATATGG+GGG 0.690405 6_3:-58884412 Msa0955080:five_prime_UTR
ATGAGACATGATGAGAGACA+AGG 0.695802 6_3:-58884439 Msa0955080:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAGAAAAAATAATACTT+TGG - chr6_3:58883788-58883807 Msa0955080:intron 10.0%
!! TTAAAGAAAAAATAATACTT+TGG - chr6_3:58883788-58883807 Msa0955080:intron 10.0%
!! AATTAAATTATGACTAATGT+TGG - chr6_3:58883150-58883169 Msa0955080:intron 15.0%
!!! TTCATATAACATATTTTGTT+CGG - chr6_3:58883502-58883521 Msa0955080:intron 15.0%
!!! TTGATTTGTTAAAAAAATGA+AGG - chr6_3:58883561-58883580 Msa0955080:intron 15.0%
!! TCATTGTCTTAAATTATTAA+TGG - chr6_3:58883896-58883915 Msa0955080:intron 15.0%
!! AATTAAATTATGACTAATGT+TGG - chr6_3:58883150-58883169 Msa0955080:intron 15.0%
!!! TTCATATAACATATTTTGTT+CGG - chr6_3:58883502-58883521 Msa0955080:intron 15.0%
!!! TTGATTTGTTAAAAAAATGA+AGG - chr6_3:58883561-58883580 Msa0955080:intron 15.0%
!! TCATTGTCTTAAATTATTAA+TGG - chr6_3:58883896-58883915 Msa0955080:intron 15.0%
!! TGATATATTGTTGTAGAATA+TGG - chr6_3:58883182-58883201 Msa0955080:intron 20.0%
!!! AATTTTGTCTAATCAACTAT+TGG - chr6_3:58883754-58883773 Msa0955080:intron 20.0%
!!! TTTTGTCTAACTTTTATGTT+TGG - chr6_3:58883855-58883874 Msa0955080:intron 20.0%
!!! AACTTTTATGTTTGGAATTA+TGG - chr6_3:58883863-58883882 Msa0955080:intron 20.0%
!!! TTTAAGACAATGAATTAATG+CGG + chr6_3:58883889-58883908 None:intergenic 20.0%
!!! TTTTTACTTATACTAGTGAT+CGG + chr6_3:58883959-58883978 None:intergenic 20.0%
!! TAATGATTAACAATGTAACT+TGG + chr6_3:58884292-58884311 None:intergenic 20.0%
!! TGATATATTGTTGTAGAATA+TGG - chr6_3:58883182-58883201 Msa0955080:intron 20.0%
!!! AATTTTGTCTAATCAACTAT+TGG - chr6_3:58883754-58883773 Msa0955080:intron 20.0%
!!! TTTTGTCTAACTTTTATGTT+TGG - chr6_3:58883855-58883874 Msa0955080:intron 20.0%
!!! AACTTTTATGTTTGGAATTA+TGG - chr6_3:58883863-58883882 Msa0955080:intron 20.0%
!!! TTTAAGACAATGAATTAATG+CGG + chr6_3:58883889-58883908 None:intergenic 20.0%
!!! TTTTTACTTATACTAGTGAT+CGG + chr6_3:58883959-58883978 None:intergenic 20.0%
!! TAATGATTAACAATGTAACT+TGG + chr6_3:58884292-58884311 None:intergenic 20.0%
! AACAGTTATTGGTACAAAAA+AGG + chr6_3:58882888-58882907 None:intergenic 25.0%
! TGTACCAATAACTGTTTAAA+AGG - chr6_3:58882892-58882911 Msa0955080:CDS 25.0%
! GTACCAATAACTGTTTAAAA+GGG - chr6_3:58882893-58882912 Msa0955080:CDS 25.0%
!! TTACTAAAGTGTTCTTTGAA+AGG + chr6_3:58882920-58882939 None:intergenic 25.0%
! CATAAACATATTGAACCTTA+GGG + chr6_3:58883114-58883133 None:intergenic 25.0%
! ACATAAACATATTGAACCTT+AGG + chr6_3:58883115-58883134 None:intergenic 25.0%
!!! CTAAAGGAACATTTTTTTTG+CGG - chr6_3:58883377-58883396 Msa0955080:intron 25.0%
! GTGTGATATTTAAGAAATGA+GGG + chr6_3:58883463-58883482 None:intergenic 25.0%
! AGTGTGATATTTAAGAAATG+AGG + chr6_3:58883464-58883483 None:intergenic 25.0%
! TTGTTAAAAAAATGAAGGAC+AGG - chr6_3:58883566-58883585 Msa0955080:intron 25.0%
!!! TTGATTTGTAAAACTGTTTC+AGG - chr6_3:58883615-58883634 Msa0955080:intron 25.0%
!! TGATTTGTAAAACTGTTTCA+GGG - chr6_3:58883616-58883635 Msa0955080:intron 25.0%
! GTTATTCAACGAATCTAAAA+AGG + chr6_3:58883985-58884004 None:intergenic 25.0%
!!! ATTTTGATTGCCTGATTTAT+AGG - chr6_3:58884103-58884122 Msa0955080:intron 25.0%
! AAAATGAAGCAAAATGAGTA+TGG + chr6_3:58884261-58884280 None:intergenic 25.0%
! AACAGTTATTGGTACAAAAA+AGG + chr6_3:58882888-58882907 None:intergenic 25.0%
! TGTACCAATAACTGTTTAAA+AGG - chr6_3:58882892-58882911 Msa0955080:CDS 25.0%
! GTACCAATAACTGTTTAAAA+GGG - chr6_3:58882893-58882912 Msa0955080:CDS 25.0%
!! TTACTAAAGTGTTCTTTGAA+AGG + chr6_3:58882920-58882939 None:intergenic 25.0%
! CATAAACATATTGAACCTTA+GGG + chr6_3:58883114-58883133 None:intergenic 25.0%
! ACATAAACATATTGAACCTT+AGG + chr6_3:58883115-58883134 None:intergenic 25.0%
!!! CTAAAGGAACATTTTTTTTG+CGG - chr6_3:58883377-58883396 Msa0955080:intron 25.0%
! GTGTGATATTTAAGAAATGA+GGG + chr6_3:58883463-58883482 None:intergenic 25.0%
! AGTGTGATATTTAAGAAATG+AGG + chr6_3:58883464-58883483 None:intergenic 25.0%
! TTGTTAAAAAAATGAAGGAC+AGG - chr6_3:58883566-58883585 Msa0955080:intron 25.0%
!!! TTGATTTGTAAAACTGTTTC+AGG - chr6_3:58883615-58883634 Msa0955080:intron 25.0%
!! TGATTTGTAAAACTGTTTCA+GGG - chr6_3:58883616-58883635 Msa0955080:intron 25.0%
! GTTATTCAACGAATCTAAAA+AGG + chr6_3:58883985-58884004 None:intergenic 25.0%
!!! ATTTTGATTGCCTGATTTAT+AGG - chr6_3:58884103-58884122 Msa0955080:intron 25.0%
! AAAATGAAGCAAAATGAGTA+TGG + chr6_3:58884261-58884280 None:intergenic 25.0%
! CAAAAAAGGTTGTTGTGTTT+TGG + chr6_3:58882874-58882893 None:intergenic 30.0%
ACAGACATTATTGCTTGTTT+AGG + chr6_3:58883069-58883088 None:intergenic 30.0%
! TGTTTATGTCTTTGAAGAGT+TGG - chr6_3:58883126-58883145 Msa0955080:intron 30.0%
ATTGTTGTAGAATATGGTTG+AGG - chr6_3:58883188-58883207 Msa0955080:intron 30.0%
TACCAAATCTTGATTGTGAA+GGG - chr6_3:58883217-58883236 Msa0955080:intron 30.0%
AAAGCTCTCTTCAAACTTAA+AGG - chr6_3:58883258-58883277 Msa0955080:intron 30.0%
! TTGTACCCTTTAATTTCTTG+TGG - chr6_3:58883334-58883353 Msa0955080:intron 30.0%
CATTGCCACAAGAAATTAAA+GGG + chr6_3:58883342-58883361 None:intergenic 30.0%
TCATTGCCACAAGAAATTAA+AGG + chr6_3:58883343-58883362 None:intergenic 30.0%
TAATTTCTTGTGGCAATGAA+TGG - chr6_3:58883344-58883363 Msa0955080:intron 30.0%
CGCAAAAAAAATGTTCCTTT+AGG + chr6_3:58883379-58883398 None:intergenic 30.0%
! AAATTGCTCCATGTGATTTT+GGG + chr6_3:58883434-58883453 None:intergenic 30.0%
! AAAATTGCTCCATGTGATTT+TGG + chr6_3:58883435-58883454 None:intergenic 30.0%
CTAGTAGACAATACAATATC+CGG - chr6_3:58883532-58883551 Msa0955080:intron 30.0%
TAGTAGACAATACAATATCC+GGG - chr6_3:58883533-58883552 Msa0955080:intron 30.0%
TTTAACAAATCAAACACACC+CGG + chr6_3:58883554-58883573 None:intergenic 30.0%
! CAGTTTTACAAATCAAACAC+TGG + chr6_3:58883611-58883630 None:intergenic 30.0%
! TCAAAATCAGTTACTTTCCT+CGG + chr6_3:58884090-58884109 None:intergenic 30.0%
ATCATCTACTCCTATAAATC+AGG + chr6_3:58884116-58884135 None:intergenic 30.0%
AGATGATGTAGAAGTTGAAA+TGG - chr6_3:58884129-58884148 Msa0955080:intron 30.0%
TACAAAAGTGAAGCAACAAA+TGG - chr6_3:58884325-58884344 Msa0955080:five_prime_UTR 30.0%
! CAAAAAAGGTTGTTGTGTTT+TGG + chr6_3:58882874-58882893 None:intergenic 30.0%
ACAGACATTATTGCTTGTTT+AGG + chr6_3:58883069-58883088 None:intergenic 30.0%
! TGTTTATGTCTTTGAAGAGT+TGG - chr6_3:58883126-58883145 Msa0955080:intron 30.0%
ATTGTTGTAGAATATGGTTG+AGG - chr6_3:58883188-58883207 Msa0955080:intron 30.0%
TACCAAATCTTGATTGTGAA+GGG - chr6_3:58883217-58883236 Msa0955080:intron 30.0%
AAAGCTCTCTTCAAACTTAA+AGG - chr6_3:58883258-58883277 Msa0955080:intron 30.0%
! TTGTACCCTTTAATTTCTTG+TGG - chr6_3:58883334-58883353 Msa0955080:intron 30.0%
CATTGCCACAAGAAATTAAA+GGG + chr6_3:58883342-58883361 None:intergenic 30.0%
TCATTGCCACAAGAAATTAA+AGG + chr6_3:58883343-58883362 None:intergenic 30.0%
TAATTTCTTGTGGCAATGAA+TGG - chr6_3:58883344-58883363 Msa0955080:intron 30.0%
CGCAAAAAAAATGTTCCTTT+AGG + chr6_3:58883379-58883398 None:intergenic 30.0%
! AAATTGCTCCATGTGATTTT+GGG + chr6_3:58883434-58883453 None:intergenic 30.0%
! AAAATTGCTCCATGTGATTT+TGG + chr6_3:58883435-58883454 None:intergenic 30.0%
CTAGTAGACAATACAATATC+CGG - chr6_3:58883532-58883551 Msa0955080:intron 30.0%
TAGTAGACAATACAATATCC+GGG - chr6_3:58883533-58883552 Msa0955080:intron 30.0%
TTTAACAAATCAAACACACC+CGG + chr6_3:58883554-58883573 None:intergenic 30.0%
! CAGTTTTACAAATCAAACAC+TGG + chr6_3:58883611-58883630 None:intergenic 30.0%
! TCAAAATCAGTTACTTTCCT+CGG + chr6_3:58884090-58884109 None:intergenic 30.0%
ATCATCTACTCCTATAAATC+AGG + chr6_3:58884116-58884135 None:intergenic 30.0%
AGATGATGTAGAAGTTGAAA+TGG - chr6_3:58884129-58884148 Msa0955080:intron 30.0%
TACAAAAGTGAAGCAACAAA+TGG - chr6_3:58884325-58884344 Msa0955080:five_prime_UTR 30.0%
! AAGGAGTATGCCTCAAATAT+GGG - chr6_3:58882803-58882822 Msa0955080:CDS 35.0%
! GGTCCCTTTTAAACAGTTAT+TGG + chr6_3:58882899-58882918 None:intergenic 35.0%
TGAACCTTAGGGAAAATAGA+GGG + chr6_3:58883103-58883122 None:intergenic 35.0%
TTGAACCTTAGGGAAAATAG+AGG + chr6_3:58883104-58883123 None:intergenic 35.0%
GTACCAAATCTTGATTGTGA+AGG - chr6_3:58883216-58883235 Msa0955080:intron 35.0%
CTTTGATTCCCAAAATCACA+TGG - chr6_3:58883423-58883442 Msa0955080:intron 35.0%
!! GTTTTAGACAACTTGTACGT+GGG + chr6_3:58883720-58883739 None:intergenic 35.0%
!! TGTTTTAGACAACTTGTACG+TGG + chr6_3:58883721-58883740 None:intergenic 35.0%
TTGTTTATAATAGTGACCCG+AGG - chr6_3:58884070-58884089 Msa0955080:intron 35.0%
! CAAAATCAGTTACTTTCCTC+GGG + chr6_3:58884089-58884108 None:intergenic 35.0%
TGATGTAGAAGTTGAAATGG+AGG - chr6_3:58884132-58884151 Msa0955080:intron 35.0%
AGCAACTGAATAAACAGAAG+GGG + chr6_3:58884371-58884390 None:intergenic 35.0%
CAGCAACTGAATAAACAGAA+GGG + chr6_3:58884372-58884391 None:intergenic 35.0%
ACAGCAACTGAATAAACAGA+AGG + chr6_3:58884373-58884392 None:intergenic 35.0%
ACATTATAGTGCAAGCATGA+GGG + chr6_3:58884438-58884457 None:intergenic 35.0%
TACATTATAGTGCAAGCATG+AGG + chr6_3:58884439-58884458 None:intergenic 35.0%
! AAGGAGTATGCCTCAAATAT+GGG - chr6_3:58882803-58882822 Msa0955080:CDS 35.0%
! GGTCCCTTTTAAACAGTTAT+TGG + chr6_3:58882899-58882918 None:intergenic 35.0%
TGAACCTTAGGGAAAATAGA+GGG + chr6_3:58883103-58883122 None:intergenic 35.0%
TTGAACCTTAGGGAAAATAG+AGG + chr6_3:58883104-58883123 None:intergenic 35.0%
GTACCAAATCTTGATTGTGA+AGG - chr6_3:58883216-58883235 Msa0955080:intron 35.0%
CTTTGATTCCCAAAATCACA+TGG - chr6_3:58883423-58883442 Msa0955080:intron 35.0%
!! GTTTTAGACAACTTGTACGT+GGG + chr6_3:58883720-58883739 None:intergenic 35.0%
!! TGTTTTAGACAACTTGTACG+TGG + chr6_3:58883721-58883740 None:intergenic 35.0%
TTGTTTATAATAGTGACCCG+AGG - chr6_3:58884070-58884089 Msa0955080:intron 35.0%
! CAAAATCAGTTACTTTCCTC+GGG + chr6_3:58884089-58884108 None:intergenic 35.0%
TGATGTAGAAGTTGAAATGG+AGG - chr6_3:58884132-58884151 Msa0955080:intron 35.0%
AGCAACTGAATAAACAGAAG+GGG + chr6_3:58884371-58884390 None:intergenic 35.0%
CAGCAACTGAATAAACAGAA+GGG + chr6_3:58884372-58884391 None:intergenic 35.0%
ACAGCAACTGAATAAACAGA+AGG + chr6_3:58884373-58884392 None:intergenic 35.0%
ACATTATAGTGCAAGCATGA+GGG + chr6_3:58884438-58884457 None:intergenic 35.0%
TACATTATAGTGCAAGCATG+AGG + chr6_3:58884439-58884458 None:intergenic 35.0%
! GAAGGAGTATGCCTCAAATA+TGG - chr6_3:58882802-58882821 Msa0955080:CDS 40.0%
! AGGAGTATGCCTCAAATATG+GGG - chr6_3:58882804-58882823 Msa0955080:CDS 40.0%
!! GAACAAAGTGTCGTTGTTGT+TGG + chr6_3:58882943-58882962 None:intergenic 40.0%
AAGAGAGTTGTGTTCTGTTG+TGG + chr6_3:58882986-58883005 None:intergenic 40.0%
! TACTCCCTCTATTTTCCCTA+AGG - chr6_3:58883096-58883115 Msa0955080:intron 40.0%
CACCCTTCACAATCAAGATT+TGG + chr6_3:58883222-58883241 None:intergenic 40.0%
TTTCTTGTGGCAATGAATGG+TGG - chr6_3:58883347-58883366 Msa0955080:intron 40.0%
CAAAAAGTTGTGGTGTGGTT+TGG + chr6_3:58883696-58883715 None:intergenic 40.0%
GCACAAAAGATAACAGTCAG+CGG - chr6_3:58884154-58884173 Msa0955080:exon 40.0%
TTGAAAGCAATCAAACGTGC+AGG - chr6_3:58884202-58884221 Msa0955080:five_prime_UTR 40.0%
TGAAAGCAATCAAACGTGCA+GGG - chr6_3:58884203-58884222 Msa0955080:five_prime_UTR 40.0%
! GAAGGAGTATGCCTCAAATA+TGG - chr6_3:58882802-58882821 Msa0955080:CDS 40.0%
! AGGAGTATGCCTCAAATATG+GGG - chr6_3:58882804-58882823 Msa0955080:CDS 40.0%
!! GAACAAAGTGTCGTTGTTGT+TGG + chr6_3:58882943-58882962 None:intergenic 40.0%
AAGAGAGTTGTGTTCTGTTG+TGG + chr6_3:58882986-58883005 None:intergenic 40.0%
! TACTCCCTCTATTTTCCCTA+AGG - chr6_3:58883096-58883115 Msa0955080:intron 40.0%
CACCCTTCACAATCAAGATT+TGG + chr6_3:58883222-58883241 None:intergenic 40.0%
TTTCTTGTGGCAATGAATGG+TGG - chr6_3:58883347-58883366 Msa0955080:intron 40.0%
CAAAAAGTTGTGGTGTGGTT+TGG + chr6_3:58883696-58883715 None:intergenic 40.0%
GCACAAAAGATAACAGTCAG+CGG - chr6_3:58884154-58884173 Msa0955080:exon 40.0%
TTGAAAGCAATCAAACGTGC+AGG - chr6_3:58884202-58884221 Msa0955080:five_prime_UTR 40.0%
TGAAAGCAATCAAACGTGCA+GGG - chr6_3:58884203-58884222 Msa0955080:five_prime_UTR 40.0%
CATGATGAGAGACAAGGTGA+AGG - chr6_3:58882784-58882803 Msa0955080:CDS 45.0%
GGAGTATGCCTCAAATATGG+GGG - chr6_3:58882805-58882824 Msa0955080:CDS 45.0%
! TATGGGGGAGCGCAATAAAA+AGG - chr6_3:58882820-58882839 Msa0955080:CDS 45.0%
! GCGCAATAAAAAGGCATGCT+TGG - chr6_3:58882829-58882848 Msa0955080:CDS 45.0%
AGTTGTGTTCTGTTGTGGTG+TGG + chr6_3:58882981-58883000 None:intergenic 45.0%
GTTTCAGGGACAGAACAAAC+TGG - chr6_3:58883630-58883649 Msa0955080:intron 45.0%
ACAGAACAAACTGGAGGCAA+AGG - chr6_3:58883639-58883658 Msa0955080:intron 45.0%
TGGGACAAAAAGTTGTGGTG+TGG + chr6_3:58883701-58883720 None:intergenic 45.0%
GTACGTGGGACAAAAAGTTG+TGG + chr6_3:58883706-58883725 None:intergenic 45.0%
AAGATAACAGTCAGCGGCTA+TGG - chr6_3:58884160-58884179 Msa0955080:five_prime_UTR 45.0%
TGAGTATGGCCAGGTAGAAA+TGG + chr6_3:58884247-58884266 None:intergenic 45.0%
GAAGCAAAATGAGTATGGCC+AGG + chr6_3:58884256-58884275 None:intergenic 45.0%
! AGTTGCTGTTGCATCTGATG+AGG - chr6_3:58884384-58884403 Msa0955080:five_prime_UTR 45.0%
CATGATGAGAGACAAGGTGA+AGG - chr6_3:58882784-58882803 Msa0955080:CDS 45.0%
GGAGTATGCCTCAAATATGG+GGG - chr6_3:58882805-58882824 Msa0955080:CDS 45.0%
! TATGGGGGAGCGCAATAAAA+AGG - chr6_3:58882820-58882839 Msa0955080:CDS 45.0%
! GCGCAATAAAAAGGCATGCT+TGG - chr6_3:58882829-58882848 Msa0955080:CDS 45.0%
AGTTGTGTTCTGTTGTGGTG+TGG + chr6_3:58882981-58883000 None:intergenic 45.0%
GTTTCAGGGACAGAACAAAC+TGG - chr6_3:58883630-58883649 Msa0955080:intron 45.0%
ACAGAACAAACTGGAGGCAA+AGG - chr6_3:58883639-58883658 Msa0955080:intron 45.0%
TGGGACAAAAAGTTGTGGTG+TGG + chr6_3:58883701-58883720 None:intergenic 45.0%
GTACGTGGGACAAAAAGTTG+TGG + chr6_3:58883706-58883725 None:intergenic 45.0%
AAGATAACAGTCAGCGGCTA+TGG - chr6_3:58884160-58884179 Msa0955080:five_prime_UTR 45.0%
TGAGTATGGCCAGGTAGAAA+TGG + chr6_3:58884247-58884266 None:intergenic 45.0%
GAAGCAAAATGAGTATGGCC+AGG + chr6_3:58884256-58884275 None:intergenic 45.0%
! AGTTGCTGTTGCATCTGATG+AGG - chr6_3:58884384-58884403 Msa0955080:five_prime_UTR 45.0%
ATTGCGCTCCCCCATATTTG+AGG + chr6_3:58882816-58882835 None:intergenic 50.0%
GTTGTGGTGTGGTCACTGTT+TGG + chr6_3:58882970-58882989 None:intergenic 50.0%
!! GTGGCAATGAATGGTGGACA+TGG - chr6_3:58883353-58883372 Msa0955080:intron 50.0%
!! GAATGGTGGACATGGCCTAA+AGG - chr6_3:58883361-58883380 Msa0955080:intron 50.0%
TCAGGGACAGAACAAACTGG+AGG - chr6_3:58883633-58883652 Msa0955080:intron 50.0%
ACAAACTGGAGGCAAAGGAC+AGG - chr6_3:58883644-58883663 Msa0955080:intron 50.0%
!! GTTGTGGTGTGGTTTGGTGA+GGG + chr6_3:58883690-58883709 None:intergenic 50.0%
!! AGTTGTGGTGTGGTTTGGTG+AGG + chr6_3:58883691-58883710 None:intergenic 50.0%
GAACCATGGCCATTTCTACC+TGG - chr6_3:58884235-58884254 Msa0955080:five_prime_UTR 50.0%
ATTGCGCTCCCCCATATTTG+AGG + chr6_3:58882816-58882835 None:intergenic 50.0%
GTTGTGGTGTGGTCACTGTT+TGG + chr6_3:58882970-58882989 None:intergenic 50.0%
!! GTGGCAATGAATGGTGGACA+TGG - chr6_3:58883353-58883372 Msa0955080:intron 50.0%
!! GAATGGTGGACATGGCCTAA+AGG - chr6_3:58883361-58883380 Msa0955080:intron 50.0%
TCAGGGACAGAACAAACTGG+AGG - chr6_3:58883633-58883652 Msa0955080:intron 50.0%
ACAAACTGGAGGCAAAGGAC+AGG - chr6_3:58883644-58883663 Msa0955080:intron 50.0%
!! GTTGTGGTGTGGTTTGGTGA+GGG + chr6_3:58883690-58883709 None:intergenic 50.0%
!! AGTTGTGGTGTGGTTTGGTG+AGG + chr6_3:58883691-58883710 None:intergenic 50.0%
GAACCATGGCCATTTCTACC+TGG - chr6_3:58884235-58884254 Msa0955080:five_prime_UTR 50.0%
CAGGGAAAGCAGCAGAACCA+TGG - chr6_3:58884221-58884240 Msa0955080:five_prime_UTR 55.0%
TGGCCAGGTAGAAATGGCCA+TGG + chr6_3:58884241-58884260 None:intergenic 55.0%
CAGGGAAAGCAGCAGAACCA+TGG - chr6_3:58884221-58884240 Msa0955080:five_prime_UTR 55.0%
TGGCCAGGTAGAAATGGCCA+TGG + chr6_3:58884241-58884260 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 58882780 58884459 58882780 ID=Msa0955080;Name=Msa0955080
chr6_3 mRNA 58882780 58884459 58882780 ID=Msa0955080-mRNA-1;Parent=Msa0955080;Name=Msa0955080-mRNA-1;_AED=0.11;_eAED=0.11;_QI=301|0.5|0.66|1|0.5|0.66|3|0|125
chr6_3 exon 58882780 58883069 58882780 ID=Msa0955080-mRNA-1:exon:11585;Parent=Msa0955080-mRNA-1
chr6_3 exon 58883960 58884041 58883960 ID=Msa0955080-mRNA-1:exon:11584;Parent=Msa0955080-mRNA-1
chr6_3 exon 58884153 58884459 58884153 ID=Msa0955080-mRNA-1:exon:11583;Parent=Msa0955080-mRNA-1
chr6_3 five_prime_UTR 58884159 58884459 58884159 ID=Msa0955080-mRNA-1:five_prime_utr;Parent=Msa0955080-mRNA-1
chr6_3 CDS 58884153 58884158 58884153 ID=Msa0955080-mRNA-1:cds;Parent=Msa0955080-mRNA-1
chr6_3 CDS 58883960 58884041 58883960 ID=Msa0955080-mRNA-1:cds;Parent=Msa0955080-mRNA-1
chr6_3 CDS 58882780 58883069 58882780 ID=Msa0955080-mRNA-1:cds;Parent=Msa0955080-mRNA-1
Gene Sequence

>Msa0955080

ATGTCTAATATGGTTGAGGTTAGAGTACCAAATCTTGATTGTGAAGGGTGTGCTTCAAAACTAAAGAAAGCTCTCTTCAAACTTAAAGTCAGCGGCTATGGTTTAGAAGAAAAAAAAGTATTGAAAGCAATCAAACGTGCAGGGAAAGCAGCAGAACCATGGCCATTTCTACCTGGCCATACTCATTTTGCTTCATTTTACAAGTATCCAAGTTACATTGTTAATCATTATTATAATGATGCATACAAAAGTGAAGCAACAAATGGAGTTCATACTTTTTTTCATACCCCTTCTGTTTATTCAGTTGCTGTTGCATCTGATGAGGCTTTTGCTTCAATGTTTAGTGATGATAACCCTCATGCTTGCACTATAATGTAA
Protein sequence

>Msa0955080

MSNMVEVRVPNLDCEGCASKLKKALFKLKVSGYGLEEKKVLKAIKRAGKAAEPWPFLPGHTHFASFYKYPSYIVNHYYNDAYKSEATNGVHTFFHTPSVYSVAVASDEAFASMFSDDNPHACTIM*