Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743890 | XP_024639157.1 | 61.967 | 539 | 145 | 6 | 15 | 499 | 3 | 535 | 0.0 | 623 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743890 | G7K4M4 | 61.326 | 543 | 146 | 6 | 15 | 499 | 3 | 539 | 0.0 | 622 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa0743890 | 0.820059 | 8.378130e-53 | -8.615850e-47 |
| Msa0003890 | Msa0743890 | 0.804816 | 1.801259e-49 | -8.615850e-47 |
| Msa0017510 | Msa0743890 | 0.865459 | 5.817803e-65 | -8.615850e-47 |
| Msa0024550 | Msa0743890 | 0.807300 | 5.406691e-50 | -8.615850e-47 |
| Msa0028640 | Msa0743890 | 0.829746 | 4.331828e-55 | -8.615850e-47 |
| Msa0074240 | Msa0743890 | 0.813548 | 2.420638e-51 | -8.615850e-47 |
| Msa0089630 | Msa0743890 | 0.803675 | 3.112686e-49 | -8.615850e-47 |
| Msa0110970 | Msa0743890 | 0.806996 | 6.270005e-50 | -8.615850e-47 |
| Msa0120400 | Msa0743890 | 0.807950 | 3.934792e-50 | -8.615850e-47 |
| Msa0625720 | Msa0743890 | 0.802065 | 6.694510e-49 | -8.615850e-47 |
| Msa0648880 | Msa0743890 | 0.801793 | 7.614519e-49 | -8.615850e-47 |
| Msa0657970 | Msa0743890 | 0.824517 | 7.733990e-54 | -8.615850e-47 |
| Msa0669320 | Msa0743890 | 0.822226 | 2.653001e-53 | -8.615850e-47 |
| Msa0683510 | Msa0743890 | 0.804742 | 1.867076e-49 | -8.615850e-47 |
| Msa0691380 | Msa0743890 | 0.814565 | 1.443895e-51 | -8.615850e-47 |
| Msa0730430 | Msa0743890 | 0.803787 | 2.951225e-49 | -8.615850e-47 |
| Msa0731940 | Msa0743890 | 0.801645 | 8.166600e-49 | -8.615850e-47 |
| Msa0741840 | Msa0743890 | 0.809519 | 1.817933e-50 | -8.615850e-47 |
| Msa0743890 | Msa0769920 | 0.824328 | 8.565127e-54 | -8.615850e-47 |
| Msa0743890 | Msa0770720 | 0.806461 | 8.134481e-50 | -8.615850e-47 |
| Msa0743890 | Msa0786500 | 0.825221 | 5.274638e-54 | -8.615850e-47 |
| Msa0743890 | Msa0816150 | 0.892072 | 2.223494e-74 | -8.615850e-47 |
| Msa0743890 | Msa0822870 | 0.810491 | 1.122860e-50 | -8.615850e-47 |
| Msa0743890 | Msa0824840 | 0.898309 | 6.018235e-77 | -8.615850e-47 |
| Msa0743890 | Msa0828560 | 0.817730 | 2.833662e-52 | -8.615850e-47 |
| Msa0743890 | Msa0838580 | 0.803675 | 3.113528e-49 | -8.615850e-47 |
| Msa0743890 | Msa0870640 | 0.827237 | 1.747959e-54 | -8.615850e-47 |
| Msa0743890 | Msa0876190 | 0.808006 | 3.828601e-50 | -8.615850e-47 |
| Msa0743890 | Msa0880140 | 0.862909 | 3.628450e-64 | -8.615850e-47 |
| Msa0743890 | Msa0909120 | 0.837350 | 5.473385e-57 | -8.615850e-47 |
| Msa0743890 | Msa0918220 | 0.820483 | 6.697104e-53 | -8.615850e-47 |
| Msa0743890 | Msa0938220 | 0.809954 | 1.465917e-50 | -8.615850e-47 |
| Msa0743890 | Msa0948290 | 0.810409 | 1.169364e-50 | -8.615850e-47 |
| Msa0743890 | Msa0955080 | 0.805865 | 1.086041e-49 | -8.615850e-47 |
| Msa0743890 | Msa0959360 | 0.804536 | 2.060449e-49 | -8.615850e-47 |
| Msa0743890 | Msa0969520 | 0.800301 | 1.537074e-48 | -8.615850e-47 |
| Msa0743890 | Msa1014540 | 0.808367 | 3.206930e-50 | -8.615850e-47 |
| Msa0743890 | Msa1019000 | 0.802212 | 6.245540e-49 | -8.615850e-47 |
| Msa0743890 | Msa1019430 | 0.811407 | 7.109627e-51 | -8.615850e-47 |
| Msa0743890 | Msa1019470 | 0.809467 | 1.865334e-50 | -8.615850e-47 |
| Msa0743890 | Msa1045200 | 0.803498 | 3.386857e-49 | -8.615850e-47 |
| Msa0743890 | Msa1085200 | 0.817663 | 2.934547e-52 | -8.615850e-47 |
| Msa0743890 | Msa1137570 | 0.808158 | 3.553345e-50 | -8.615850e-47 |
| Msa0743890 | Msa1151910 | 0.805694 | 1.179344e-49 | -8.615850e-47 |
| Msa0743890 | Msa1154710 | 0.815646 | 8.307574e-52 | -8.615850e-47 |
| Msa0743890 | Msa1172450 | 0.800060 | 1.720827e-48 | -8.615850e-47 |
| Msa0743890 | Msa1173100 | 0.801798 | 7.596506e-49 | -8.615850e-47 |
| Msa0743890 | Msa1186060 | 0.801982 | 6.964396e-49 | -8.615850e-47 |
| Msa0743890 | Msa1209460 | 0.809512 | 1.823789e-50 | -8.615850e-47 |
| Msa0743890 | Msa1271290 | 0.803344 | 3.646246e-49 | -8.615850e-47 |
| Msa0743890 | Msa1283840 | 0.800719 | 1.262856e-48 | -8.615850e-47 |
| Msa0743890 | Msa1283860 | 0.813359 | 2.663675e-51 | -8.615850e-47 |
| Msa0743890 | Msa1284260 | 0.805527 | 1.278588e-49 | -8.615850e-47 |
| Msa0743890 | Msa1284680 | 0.804379 | 2.222703e-49 | -8.615850e-47 |
| Msa0743890 | Msa1302830 | 0.812111 | 4.995999e-51 | -8.615850e-47 |
| Msa0743890 | Msa1308380 | 0.807325 | 5.341802e-50 | -8.615850e-47 |
| Msa0743890 | Msa1309030 | 0.808377 | 3.191384e-50 | -8.615850e-47 |
| Msa0743890 | Msa1322860 | 0.806284 | 8.865282e-50 | -8.615850e-47 |
| Msa0743890 | Msa1324500 | 0.804585 | 2.013329e-49 | -8.615850e-47 |
| Msa0743890 | Msa1327050 | 0.808985 | 2.366650e-50 | -8.615850e-47 |
| Msa0743890 | Msa1366340 | 0.804315 | 2.291205e-49 | -8.615850e-47 |
| Msa0743890 | Msa1372760 | 0.814426 | 1.550296e-51 | -8.615850e-47 |
| Msa0743890 | Msa1374550 | 0.821366 | 4.194928e-53 | -8.615850e-47 |
| Msa0743890 | Msa1397860 | 0.818195 | 2.225202e-52 | -8.615850e-47 |
| Msa0743890 | Msa1409870 | 0.804128 | 2.506273e-49 | -8.615850e-47 |
| Msa0743890 | Msa1438250 | 0.830884 | 2.284339e-55 | -8.615850e-47 |
| Msa0743890 | Msa1466540 | 0.811205 | 7.864556e-51 | -8.615850e-47 |
| Msa0139060 | Msa0743890 | 0.937413 | 3.607731e-98 | -8.615850e-47 |
| Msa0157290 | Msa0743890 | 0.865456 | 5.830184e-65 | -8.615850e-47 |
| Msa0166560 | Msa0743890 | 0.807963 | 3.910163e-50 | -8.615850e-47 |
| Msa0200260 | Msa0743890 | 0.823821 | 1.126835e-53 | -8.615850e-47 |
| Msa0211150 | Msa0743890 | 0.816306 | 5.920621e-52 | -8.615850e-47 |
| Msa0220740 | Msa0743890 | 0.814130 | 1.801661e-51 | -8.615850e-47 |
| Msa0392510 | Msa0743890 | 0.819946 | 8.891980e-53 | -8.615850e-47 |
| Msa0393080 | Msa0743890 | 0.803790 | 2.946216e-49 | -8.615850e-47 |
| Msa0402290 | Msa0743890 | 0.816508 | 5.334795e-52 | -8.615850e-47 |
| Msa0410650 | Msa0743890 | 0.816267 | 6.039611e-52 | -8.615850e-47 |
| Msa0417880 | Msa0743890 | 0.800499 | 1.400584e-48 | -8.615850e-47 |
| Msa0424790 | Msa0743890 | 0.805383 | 1.370691e-49 | -8.615850e-47 |
| Msa0440750 | Msa0743890 | 0.818838 | 1.590769e-52 | -8.615850e-47 |
| Msa0443260 | Msa0743890 | 0.806841 | 6.763227e-50 | -8.615850e-47 |
| Msa0464680 | Msa0743890 | 0.820713 | 5.931542e-53 | -8.615850e-47 |
| Msa0467490 | Msa0743890 | 0.805869 | 1.083695e-49 | -8.615850e-47 |
| Msa0243100 | Msa0743890 | 0.818309 | 2.096710e-52 | -8.615850e-47 |
| Msa0261340 | Msa0743890 | 0.831619 | 1.506477e-55 | -8.615850e-47 |
| Msa0283450 | Msa0743890 | 0.804717 | 1.889379e-49 | -8.615850e-47 |
| Msa0284420 | Msa0743890 | 0.804641 | 1.959533e-49 | -8.615850e-47 |
| Msa0287650 | Msa0743890 | 0.808920 | 2.443799e-50 | -8.615850e-47 |
| Msa0291540 | Msa0743890 | 0.805537 | 1.272602e-49 | -8.615850e-47 |
| Msa0300690 | Msa0743890 | 0.804376 | 2.225141e-49 | -8.615850e-47 |
| Msa0332000 | Msa0743890 | 0.807995 | 3.848935e-50 | -8.615850e-47 |
| Msa0345970 | Msa0743890 | 0.818672 | 1.734704e-52 | -8.615850e-47 |
| Msa0355220 | Msa0743890 | 0.808284 | 3.340576e-50 | -8.615850e-47 |
| Msa0357340 | Msa0743890 | 0.853802 | 1.877549e-61 | -8.615850e-47 |
| Msa0488560 | Msa0743890 | 0.817804 | 2.727598e-52 | -8.615850e-47 |
| Msa0498060 | Msa0743890 | 0.801811 | 7.551218e-49 | -8.615850e-47 |
| Msa0503580 | Msa0743890 | 0.800594 | 1.339379e-48 | -8.615850e-47 |
| Msa0507680 | Msa0743890 | 0.811719 | 6.082143e-51 | -8.615850e-47 |
| Msa0602240 | Msa0743890 | 0.804274 | 2.336590e-49 | -8.615850e-47 |
| Msa0602250 | Msa0743890 | 0.808849 | 2.530625e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743890 | MtrunA17_Chr5g0446191 | 56.554 | 534 | 164 | 10 | 26 | 499 | 20 | 545 | 0.0 | 532 |
| Msa0743890 | MtrunA17_Chr5g0446231 | 55.229 | 545 | 169 | 13 | 22 | 499 | 1 | 537 | 0.0 | 526 |
| Msa0743890 | MtrunA17_Chr5g0446171 | 72.222 | 144 | 39 | 1 | 1 | 143 | 1 | 144 | 1.26e-63 | 207 |
| Msa0743890 | MtrunA17_Chr4g0012551 | 34.211 | 266 | 147 | 9 | 219 | 478 | 1 | 244 | 4.65e-35 | 131 |
| Msa0743890 | MtrunA17_Chr5g0413371 | 61.207 | 116 | 37 | 1 | 18 | 133 | 2 | 109 | 1.04e-33 | 135 |
| Msa0743890 | MtrunA17_Chr5g0445771 | 45.806 | 155 | 66 | 3 | 4 | 143 | 2 | 153 | 8.94e-25 | 107 |
| Msa0743890 | MtrunA17_Chr5g0445831 | 42.169 | 166 | 67 | 3 | 1 | 144 | 1 | 159 | 1.59e-24 | 105 |
| Msa0743890 | MtrunA17_Chr6g0462331 | 28.620 | 297 | 184 | 10 | 221 | 500 | 8 | 293 | 8.59e-24 | 103 |
| Msa0743890 | MtrunA17_Chr5g0445861 | 40.761 | 184 | 65 | 7 | 1 | 143 | 1 | 181 | 9.72e-24 | 103 |
| Msa0743890 | MtrunA17_Chr5g0445881 | 37.811 | 201 | 61 | 6 | 1 | 144 | 1 | 194 | 1.64e-22 | 100 |
| Msa0743890 | MtrunA17_Chr6g0477621 | 37.333 | 150 | 85 | 3 | 328 | 474 | 11 | 154 | 1.16e-19 | 89.0 |
| Msa0743890 | MtrunA17_Chr3g0085601 | 29.442 | 197 | 120 | 6 | 304 | 494 | 2 | 185 | 3.22e-18 | 85.5 |
| Msa0743890 | MtrunA17_Chr1g0174681 | 37.037 | 108 | 61 | 2 | 371 | 478 | 11 | 111 | 7.25e-18 | 83.6 |
| Msa0743890 | MtrunA17_Chr5g0416551 | 29.213 | 178 | 111 | 5 | 301 | 474 | 1 | 167 | 4.30e-14 | 71.2 |
| Msa0743890 | MtrunA17_Chr5g0445961 | 31.609 | 174 | 84 | 4 | 1 | 142 | 1 | 171 | 6.47e-14 | 74.3 |
| Msa0743890 | MtrunA17_Chr5g0446181 | 40.845 | 142 | 61 | 4 | 1 | 126 | 1 | 135 | 1.92e-13 | 72.0 |
| Msa0743890 | MtrunA17_Chr7g0215391 | 28.571 | 245 | 150 | 9 | 223 | 451 | 19 | 254 | 1.60e-12 | 69.7 |
| Msa0743890 | MtrunA17_Chr1g0194781 | 28.571 | 245 | 150 | 9 | 223 | 451 | 19 | 254 | 1.60e-12 | 69.7 |
| Msa0743890 | MtrunA17_Chr1g0202531 | 27.972 | 286 | 178 | 12 | 223 | 489 | 26 | 302 | 1.02e-11 | 67.0 |
| Msa0743890 | MtrunA17_Chr5g0445811 | 36.842 | 190 | 49 | 8 | 1 | 144 | 1 | 165 | 2.83e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 116 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACAACCCAGGTTCGATTT+TGG | 0.201779 | 5_1:-64406982 | None:intergenic |
| GTTCTTTGCAAATGCATATC+TGG | 0.205513 | 5_1:+64409971 | Msa0743890:CDS |
| AGAGCACTATTCGAAGTTTC+TGG | 0.226886 | 5_1:+64409809 | Msa0743890:CDS |
| AAAATTATCAATGGATTGTT+TGG | 0.246344 | 5_1:+64410080 | Msa0743890:CDS |
| TTATAGTTCCCATCTTCTTT+AGG | 0.261328 | 5_1:-64409999 | None:intergenic |
| TTATGTCATTTAAGTTATAA+TGG | 0.279777 | 5_1:-64410564 | None:intergenic |
| AGGGTTGGGGTTGCCCATTT+TGG | 0.308578 | 5_1:+64408419 | Msa0743890:CDS |
| GTACAAATTCTCAGATATTC+AGG | 0.317285 | 5_1:+64409875 | Msa0743890:CDS |
| CATTGACTGGTTCGCCCTTA+AGG | 0.319854 | 5_1:-64410361 | None:intergenic |
| TAGAGGGTTCACGTCCAAAA+TGG | 0.327794 | 5_1:-64408433 | None:intergenic |
| CTTCCTAACCCAATCGGCCT+CGG | 0.330220 | 5_1:-64410195 | None:intergenic |
| GTCTCCTAGCAAATGACCTT+CGG | 0.339559 | 5_1:+64410390 | Msa0743890:CDS |
| CTTGATAACTGCAATCCTTA+AGG | 0.357132 | 5_1:+64410346 | Msa0743890:CDS |
| AAGAAAGAAGAATAATGAAT+TGG | 0.367091 | 5_1:+64407319 | Msa0743890:CDS |
| CTTGGAAGACATGAGCATTC+AGG | 0.367632 | 5_1:+64407022 | Msa0743890:CDS |
| TCTTCAAGAGAAGTTTGAAT+TGG | 0.370237 | 5_1:+64407148 | Msa0743890:CDS |
| ATGCTTTAGCAGTGGGTGTC+AGG | 0.376463 | 5_1:-64410253 | None:intergenic |
| GTGCAGGCCCGAGGCCGATT+GGG | 0.381424 | 5_1:+64410187 | Msa0743890:CDS |
| TGTGCAGGCCCGAGGCCGAT+TGG | 0.385248 | 5_1:+64410186 | Msa0743890:CDS |
| GAGCATTCAGGAACTTGTTT+CGG | 0.395229 | 5_1:+64407034 | Msa0743890:CDS |
| CCTCTATTACCTCTTTATGT+AGG | 0.400563 | 5_1:+64408450 | Msa0743890:CDS |
| AAATTATCAATGGATTGTTT+GGG | 0.400666 | 5_1:+64410081 | Msa0743890:CDS |
| CGGTGTCGCGTACAGCGTTT+CGG | 0.405596 | 5_1:+64407054 | Msa0743890:CDS |
| TTGATAACTGCAATCCTTAA+GGG | 0.407477 | 5_1:+64410347 | Msa0743890:CDS |
| GGGATCTAACATTGATCATC+AGG | 0.407482 | 5_1:+64410148 | Msa0743890:CDS |
| TCTATCCATTTCACGGTGAC+TGG | 0.412297 | 5_1:-64410533 | None:intergenic |
| TTCACGGTGACTGGTCTAGA+TGG | 0.418534 | 5_1:-64410524 | None:intergenic |
| CTAGACCAGTCACCGTGAAA+TGG | 0.419439 | 5_1:+64410528 | Msa0743890:CDS |
| ATCTTTCTTCCTAACCCAAT+CGG | 0.420963 | 5_1:-64410201 | None:intergenic |
| ACAGTTTGATGAACTTGAAA+AGG | 0.427108 | 5_1:+64407082 | Msa0743890:CDS |
| TCTCCTAGCAAATGACCTTC+GGG | 0.429048 | 5_1:+64410391 | Msa0743890:CDS |
| AAGAAAACTAGTTTAGTTGA+AGG | 0.432212 | 5_1:+64407278 | Msa0743890:CDS |
| AGGAGACGGCCGACATTGAC+TGG | 0.436580 | 5_1:-64410374 | None:intergenic |
| CTTAAGGATTGCAGTTATCA+AGG | 0.437445 | 5_1:-64410345 | None:intergenic |
| GGCCCGAGGCCGATTGGGTT+AGG | 0.439711 | 5_1:+64410192 | Msa0743890:CDS |
| TTTCATGAGAAAATTATCAA+TGG | 0.445312 | 5_1:+64410071 | Msa0743890:CDS |
| ATGATCAATGTTAGATCCCT+TGG | 0.447829 | 5_1:-64410144 | None:intergenic |
| TTCCTAACCCAATCGGCCTC+GGG | 0.448443 | 5_1:-64410194 | None:intergenic |
| AGAATTTGTACCCTTCCAAC+TGG | 0.450224 | 5_1:-64409863 | None:intergenic |
| CTGGGTCCTCCTAAAGAAGA+TGG | 0.457044 | 5_1:+64409990 | Msa0743890:CDS |
| ACTTCGAATAGTGCTCTTGA+TGG | 0.457825 | 5_1:-64409803 | None:intergenic |
| GAACTAAAAGAGCTAGGGTT+GGG | 0.458419 | 5_1:+64408405 | Msa0743890:CDS |
| AGAGGGTTCACGTCCAAAAT+GGG | 0.465355 | 5_1:-64408432 | None:intergenic |
| GAAGAATAATGAATTGGAGT+TGG | 0.472786 | 5_1:+64407325 | Msa0743890:CDS |
| CCTACATAAAGAGGTAATAG+AGG | 0.474454 | 5_1:-64408450 | None:intergenic |
| TCTTGCCGCTCATCTACTAT+AGG | 0.475363 | 5_1:-64408494 | None:intergenic |
| TTAGTTGAAGGAGACATTGT+TGG | 0.478274 | 5_1:+64407290 | Msa0743890:CDS |
| GTGTTCATTTGAAGCAAGAA+AGG | 0.479787 | 5_1:+64410121 | Msa0743890:CDS |
| CTCTATTACCTCTTTATGTA+GGG | 0.480394 | 5_1:+64408451 | Msa0743890:CDS |
| CATAAACCCAAAATCGAACC+TGG | 0.482521 | 5_1:+64406975 | Msa0743890:CDS |
| TTATCAAGGTTGCTTTCTGA+AGG | 0.485245 | 5_1:-64410331 | None:intergenic |
| TTCAAGCTGAAGAAGATTTG+AGG | 0.489086 | 5_1:+64407186 | Msa0743890:CDS |
| GATCAACAAGCTTTGTGAAA+GGG | 0.494192 | 5_1:+64410463 | Msa0743890:CDS |
| TCTGACAACATTTGCAAAAG+AGG | 0.496897 | 5_1:+64409926 | Msa0743890:CDS |
| TTCTTTGCAAATGCATATCT+GGG | 0.497315 | 5_1:+64409972 | Msa0743890:CDS |
| CATCATACCTGCACGTCTGA+TGG | 0.501556 | 5_1:-64408575 | None:intergenic |
| TAGTTCCCATCTTCTTTAGG+AGG | 0.502708 | 5_1:-64409996 | None:intergenic |
| AACTATGCGAAAGAGGGAAA+AGG | 0.504170 | 5_1:+64407219 | Msa0743890:CDS |
| GCTCAAGGTGAATCATCATC+TGG | 0.509285 | 5_1:+64407401 | Msa0743890:CDS |
| ACAAGCTTTGTGAAAGGGTG+AGG | 0.511043 | 5_1:+64410468 | Msa0743890:CDS |
| GAGTAATTATGAAACATTGT+TGG | 0.513700 | 5_1:+64407247 | Msa0743890:CDS |
| ATGATAGTGACCAGAGGATG+GGG | 0.517665 | 5_1:+64409900 | Msa0743890:CDS |
| TGCACGCTCCCTACATAAAG+AGG | 0.520005 | 5_1:-64408459 | None:intergenic |
| CGGCACGAACTAAAAGAGCT+AGG | 0.525867 | 5_1:+64408399 | Msa0743890:CDS |
| CAATGATAGTGACCAGAGGA+TGG | 0.529533 | 5_1:+64409898 | Msa0743890:CDS |
| GAGAGGAACTATGCGAAAGA+GGG | 0.529712 | 5_1:+64407213 | Msa0743890:CDS |
| ATCAAGGTTGCTTTCTGAAG+GGG | 0.531107 | 5_1:-64410329 | None:intergenic |
| AACTAAAAGAGCTAGGGTTG+GGG | 0.531167 | 5_1:+64408406 | Msa0743890:CDS |
| AGAGAGGAACTATGCGAAAG+AGG | 0.532815 | 5_1:+64407212 | Msa0743890:CDS |
| ATTTGAAGCAAGAAAGGCCA+AGG | 0.533782 | 5_1:+64410127 | Msa0743890:CDS |
| TGAGAAAGTTGAAGCGAAAG+TGG | 0.545305 | 5_1:+64407360 | Msa0743890:CDS |
| GCATGGTTTATGTAGCTTGT+GGG | 0.546630 | 5_1:-64410434 | None:intergenic |
| AATGATAGTGACCAGAGGAT+GGG | 0.548642 | 5_1:+64409899 | Msa0743890:CDS |
| ACTATGCGAAAGAGGGAAAA+GGG | 0.558476 | 5_1:+64407220 | Msa0743890:CDS |
| AGATTCTTAGTACTCTGTGC+AGG | 0.562380 | 5_1:+64410171 | Msa0743890:CDS |
| TAATTATGAAACATTGTTGG+AGG | 0.563738 | 5_1:+64407250 | Msa0743890:CDS |
| TGATCAACAAGCTTTGTGAA+AGG | 0.564096 | 5_1:+64410462 | Msa0743890:CDS |
| TGACCCTCCATCAGACGTGC+AGG | 0.565116 | 5_1:+64408568 | Msa0743890:CDS |
| AACAGTTCGCTGTGGCCCGA+AGG | 0.565934 | 5_1:-64410406 | None:intergenic |
| TATCAAGGTTGCTTTCTGAA+GGG | 0.569374 | 5_1:-64410330 | None:intergenic |
| TAGTACTCTGTGCAGGCCCG+AGG | 0.571519 | 5_1:+64410178 | Msa0743890:CDS |
| TGGCCCGAAGGTCATTTGCT+AGG | 0.575481 | 5_1:-64410394 | None:intergenic |
| CATACCTGCACGTCTGATGG+AGG | 0.576479 | 5_1:-64408572 | None:intergenic |
| TTGAATTGGAGAGACTAATG+AGG | 0.577255 | 5_1:+64407162 | Msa0743890:CDS |
| GATTGGGTTAGGAAGAAAGA+TGG | 0.578358 | 5_1:+64410203 | Msa0743890:CDS |
| TGGGTCCTCCTAAAGAAGAT+GGG | 0.581164 | 5_1:+64409991 | Msa0743890:CDS |
| CACATTTGAACACGGAAGCA+AGG | 0.582698 | 5_1:-64410297 | None:intergenic |
| GACACCCACTGCTAAAGCAT+GGG | 0.585381 | 5_1:+64410256 | Msa0743890:CDS |
| TGACACCCACTGCTAAAGCA+TGG | 0.585774 | 5_1:+64410255 | Msa0743890:CDS |
| CGAACTAAAAGAGCTAGGGT+TGG | 0.592003 | 5_1:+64408404 | Msa0743890:CDS |
| TGGTCATTCGAAGACAACCC+AGG | 0.592494 | 5_1:-64406993 | None:intergenic |
| AAAGTTGAAGCGAAAGTGGT+TGG | 0.594562 | 5_1:+64407364 | Msa0743890:CDS |
| GAAGGTCATTTGCTAGGAGA+CGG | 0.595497 | 5_1:-64410388 | None:intergenic |
| CTACATAAAGAGGTAATAGA+GGG | 0.601936 | 5_1:-64408449 | None:intergenic |
| GGAACTAGATGAGACGTTGG+TGG | 0.604691 | 5_1:-64409751 | None:intergenic |
| AGAAGATTTGAGGAAAAGAG+AGG | 0.614227 | 5_1:+64407196 | Msa0743890:CDS |
| GGCACGAACTAAAAGAGCTA+GGG | 0.614763 | 5_1:+64408400 | Msa0743890:CDS |
| GCTTGTTGATCAATGATGCA+TGG | 0.616686 | 5_1:-64410451 | None:intergenic |
| TGCATGGTTTATGTAGCTTG+TGG | 0.616762 | 5_1:-64410435 | None:intergenic |
| GGTGTACCCTGAAAAGAATG+AGG | 0.620543 | 5_1:+64410490 | Msa0743890:CDS |
| TGACAACGTTCATATCTCAC+AGG | 0.621939 | 5_1:+64408520 | Msa0743890:CDS |
| GTTGCCCATGCTTTAGCAGT+GGG | 0.624509 | 5_1:-64410260 | None:intergenic |
| CAAGCTTTGTGAAAGGGTGA+GGG | 0.624867 | 5_1:+64410469 | Msa0743890:CDS |
| ATACCTGCACGTCTGATGGA+GGG | 0.628808 | 5_1:-64408571 | None:intergenic |
| GATGATAGCAATGCTGCTCA+AGG | 0.637953 | 5_1:+64407386 | Msa0743890:CDS |
| TGTTGCCCATGCTTTAGCAG+TGG | 0.654029 | 5_1:-64410261 | None:intergenic |
| TTTGAAGCAAGAAAGGCCAA+GGG | 0.664841 | 5_1:+64410128 | Msa0743890:CDS |
| AAGGGCGAACCAGTCAATGT+CGG | 0.669594 | 5_1:+64410365 | Msa0743890:CDS |
| ATAAACCCAAAATCGAACCT+GGG | 0.669846 | 5_1:+64406976 | Msa0743890:CDS |
| AAAGGAACTAGATGAGACGT+TGG | 0.686332 | 5_1:-64409754 | None:intergenic |
| TGATAGTGACCAGAGGATGG+GGG | 0.689252 | 5_1:+64409901 | Msa0743890:CDS |
| AAGTCTGACACATTTGAACA+CGG | 0.704591 | 5_1:-64410305 | None:intergenic |
| CAACGTTCATATCTCACAGG+AGG | 0.705255 | 5_1:+64408523 | Msa0743890:CDS |
| CAGGCAATGATAGTGACCAG+AGG | 0.712647 | 5_1:+64409894 | Msa0743890:CDS |
| ATGCACCTATAGTAGATGAG+CGG | 0.720441 | 5_1:+64408489 | Msa0743890:CDS |
| GGGAGAAGAACAGTTCGCTG+TGG | 0.729789 | 5_1:-64410414 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATATATTTCTTATCA+GGG | + | chr5_1:64408375-64408394 | Msa0743890:intron | 10.0% |
| !!! | TAAGTTATGTTTTAAAAAAT+GGG | + | chr5_1:64409469-64409488 | Msa0743890:intron | 10.0% |
| !!! | AAATTATGATTTTGAGTAAT+GGG | - | chr5_1:64407781-64407800 | None:intergenic | 15.0% |
| !!! | TATCTCTTTTAATATTTTCT+AGG | - | chr5_1:64408094-64408113 | None:intergenic | 15.0% |
| !! | TATTCAAAATGTAATTCATT+AGG | - | chr5_1:64408293-64408312 | None:intergenic | 15.0% |
| !!! | TAATGAATTACATTTTGAAT+AGG | + | chr5_1:64408292-64408311 | Msa0743890:intron | 15.0% |
| !! | CAATTAATATATTTCTTATC+AGG | + | chr5_1:64408374-64408393 | Msa0743890:intron | 15.0% |
| !!! | TTTATTTGAGTTTTTGTTTT+TGG | + | chr5_1:64409012-64409031 | Msa0743890:intron | 15.0% |
| !!! | TTATTTGAGTTTTTGTTTTT+GGG | + | chr5_1:64409013-64409032 | Msa0743890:intron | 15.0% |
| !!! | GTAAGTTATGTTTTAAAAAA+TGG | + | chr5_1:64409468-64409487 | Msa0743890:intron | 15.0% |
| !! | AAGAAAGAAGAATAATGAAT+TGG | + | chr5_1:64407319-64407338 | Msa0743890:CDS | 20.0% |
| !! | CAACTTGATATATAAATTCA+TGG | - | chr5_1:64407607-64407626 | None:intergenic | 20.0% |
| !!! | CAAATTATGATTTTGAGTAA+TGG | - | chr5_1:64407782-64407801 | None:intergenic | 20.0% |
| !! | ACATAAATTCATTTAGCATT+AGG | + | chr5_1:64407985-64408004 | Msa0743890:intron | 20.0% |
| !!! | ATGATTTATGATTTGTAGTT+GGG | - | chr5_1:64408055-64408074 | None:intergenic | 20.0% |
| !! | AGATTCAAATCAAATACATA+AGG | + | chr5_1:64408150-64408169 | Msa0743890:intron | 20.0% |
| !!! | TAAGGTCAGAAATTTTAAAT+GGG | - | chr5_1:64408257-64408276 | None:intergenic | 20.0% |
| !!! | TTAAGGTCAGAAATTTTAAA+TGG | - | chr5_1:64408258-64408277 | None:intergenic | 20.0% |
| !!! | TCAATTACATCTAGAATTAT+GGG | + | chr5_1:64408602-64408621 | Msa0743890:intron | 20.0% |
| !! | TAAATTTCTTCAATTCACTA+GGG | - | chr5_1:64408645-64408664 | None:intergenic | 20.0% |
| !!! | TGAGTTAATTACATTTTACA+GGG | - | chr5_1:64408678-64408697 | None:intergenic | 20.0% |
| !!! | ATGAGTTAATTACATTTTAC+AGG | - | chr5_1:64408679-64408698 | None:intergenic | 20.0% |
| !! | TAAGTTTATTCCAATTTCTA+TGG | + | chr5_1:64409242-64409261 | Msa0743890:intron | 20.0% |
| !!! | TTTATTACCATTTTTCCTAA+TGG | + | chr5_1:64409266-64409285 | Msa0743890:intron | 20.0% |
| !! | TTCAAAAAGAATAGTATATG+AGG | + | chr5_1:64409396-64409415 | Msa0743890:intron | 20.0% |
| !! | TAAAACATAACTTACTAACT+TGG | - | chr5_1:64409463-64409482 | None:intergenic | 20.0% |
| !!! | TTATGTTTTAAAAAATGGGT+AGG | + | chr5_1:64409473-64409492 | Msa0743890:intron | 20.0% |
| !!! | TATGTTTTAAAAAATGGGTA+GGG | + | chr5_1:64409474-64409493 | Msa0743890:intron | 20.0% |
| !! | TTAATCATTGTTGAATTTGT+TGG | + | chr5_1:64409514-64409533 | Msa0743890:intron | 20.0% |
| !!! | TAATCATTGTTGAATTTGTT+GGG | + | chr5_1:64409515-64409534 | Msa0743890:intron | 20.0% |
| !!! | TTGTAATTTTATTTGTGACT+AGG | + | chr5_1:64409595-64409614 | Msa0743890:intron | 20.0% |
| !!! | TTTTTATCTTTGCTTTGTTT+TGG | - | chr5_1:64409725-64409744 | None:intergenic | 20.0% |
| !! | AAACAAAGCAAAGATAAAAA+AGG | + | chr5_1:64409725-64409744 | Msa0743890:CDS | 20.0% |
| !!! | TTGATAATTTTCTCATGAAA+TGG | - | chr5_1:64410071-64410090 | None:intergenic | 20.0% |
| !! | TTTCATGAGAAAATTATCAA+TGG | + | chr5_1:64410071-64410090 | Msa0743890:CDS | 20.0% |
| !!! | AAAATTATCAATGGATTGTT+TGG | + | chr5_1:64410080-64410099 | Msa0743890:CDS | 20.0% |
| !!! | AAATTATCAATGGATTGTTT+GGG | + | chr5_1:64410081-64410100 | Msa0743890:CDS | 20.0% |
| ! | GAGTAATTATGAAACATTGT+TGG | + | chr5_1:64407247-64407266 | Msa0743890:CDS | 25.0% |
| ! | TAATTATGAAACATTGTTGG+AGG | + | chr5_1:64407250-64407269 | Msa0743890:CDS | 25.0% |
| !! | AAGAAAACTAGTTTAGTTGA+AGG | + | chr5_1:64407278-64407297 | Msa0743890:CDS | 25.0% |
| ! | GGAAAAAATGCATAATATAC+AGG | - | chr5_1:64407458-64407477 | None:intergenic | 25.0% |
| ! | CAATATTTATAAAGCAGCAT+TGG | - | chr5_1:64407479-64407498 | None:intergenic | 25.0% |
| ! | AATTCAATACAAGTGATGAT+CGG | + | chr5_1:64407499-64407518 | Msa0743890:intron | 25.0% |
| !! | TGCCATGGAAATATAATTTT+TGG | + | chr5_1:64407552-64407571 | Msa0743890:intron | 25.0% |
| ! | GTCCAAAAATTATATTTCCA+TGG | - | chr5_1:64407557-64407576 | None:intergenic | 25.0% |
| !!! | ATATAATTTTTGGACCAATG+AGG | + | chr5_1:64407562-64407581 | Msa0743890:intron | 25.0% |
| !!! | TATAATTTTTGGACCAATGA+GGG | + | chr5_1:64407563-64407582 | Msa0743890:intron | 25.0% |
| ! | ATGAATGTATAATGTGTTGT+TGG | + | chr5_1:64407633-64407652 | Msa0743890:intron | 25.0% |
| ! | TAGTTAGTCAATTGTTAGAA+GGG | - | chr5_1:64407935-64407954 | None:intergenic | 25.0% |
| !!! | TGTTCTTTGTTTTGTTTGAT+AGG | - | chr5_1:64407968-64407987 | None:intergenic | 25.0% |
| ! | CATTTAGCATTAGGTTATTA+TGG | + | chr5_1:64407994-64408013 | Msa0743890:intron | 25.0% |
| !! | TGATTTATGATTTGTAGTTG+GGG | - | chr5_1:64408054-64408073 | None:intergenic | 25.0% |
| !! | GATGATTTATGATTTGTAGT+TGG | - | chr5_1:64408056-64408075 | None:intergenic | 25.0% |
| !! | TTGATTTGAATCTCTTCTAT+AGG | - | chr5_1:64408143-64408162 | None:intergenic | 25.0% |
| ! | AATATATTTCTTATCAGGGA+CGG | + | chr5_1:64408379-64408398 | Msa0743890:intron | 25.0% |
| !! | CTCAATTACATCTAGAATTA+TGG | + | chr5_1:64408601-64408620 | Msa0743890:intron | 25.0% |
| ! | CTAAATTTCTTCAATTCACT+AGG | - | chr5_1:64408646-64408665 | None:intergenic | 25.0% |
| ! | GAATTGAAGAAATTTAGATG+TGG | + | chr5_1:64408649-64408668 | Msa0743890:intron | 25.0% |
| ! | TAAAAAAGAGGAAAAGAGAA+TGG | - | chr5_1:64409205-64409224 | None:intergenic | 25.0% |
| ! | AGAGAAATCTGATAAAAAAG+AGG | - | chr5_1:64409217-64409236 | None:intergenic | 25.0% |
| ! | GGTAATAAATCCATAGAAAT+TGG | - | chr5_1:64409255-64409274 | None:intergenic | 25.0% |
| ! | TATGAAGTGAAAAATGTCAA+AGG | - | chr5_1:64409775-64409794 | None:intergenic | 25.0% |
| !! | CATTTTTCACTTCATATCAT+TGG | + | chr5_1:64409779-64409798 | Msa0743890:CDS | 25.0% |
| !! | TTCTAACACAAACTTTTTGT+TGG | - | chr5_1:64409835-64409854 | None:intergenic | 25.0% |
| ! | GTTAGAAAAAAATTTCCAGT+TGG | + | chr5_1:64409848-64409867 | Msa0743890:CDS | 25.0% |
| ! | AAAAAAATTTCCAGTTGGAA+GGG | + | chr5_1:64409853-64409872 | Msa0743890:CDS | 25.0% |
| !!! | TCAGAAGAGTTAAGTTTTAT+TGG | - | chr5_1:64410233-64410252 | None:intergenic | 25.0% |
| !!! | TGTTTTTTCTATCCATTTCA+CGG | - | chr5_1:64410543-64410562 | None:intergenic | 25.0% |
| TTCGAATGACCATAAAAACT+TGG | + | chr5_1:64407004-64407023 | Msa0743890:CDS | 30.0% | |
| ! | TCATGTCTTCCAAGTTTTTA+TGG | - | chr5_1:64407016-64407035 | None:intergenic | 30.0% |
| ACAGTTTGATGAACTTGAAA+AGG | + | chr5_1:64407082-64407101 | Msa0743890:CDS | 30.0% | |
| TCTTCAAGAGAAGTTTGAAT+TGG | + | chr5_1:64407148-64407167 | Msa0743890:CDS | 30.0% | |
| GAAGAATAATGAATTGGAGT+TGG | + | chr5_1:64407325-64407344 | Msa0743890:CDS | 30.0% | |
| ACAGGTAGAATTTGAAAGAA+AGG | - | chr5_1:64407667-64407686 | None:intergenic | 30.0% | |
| ! | TTGAGTAATGGGACTTAAAT+GGG | - | chr5_1:64407770-64407789 | None:intergenic | 30.0% |
| ! | TTTGAGTAATGGGACTTAAA+TGG | - | chr5_1:64407771-64407790 | None:intergenic | 30.0% |
| GTAGTTAGTCAATTGTTAGA+AGG | - | chr5_1:64407936-64407955 | None:intergenic | 30.0% | |
| GGGGATTTAATTCAGATTAA+AGG | - | chr5_1:64408035-64408054 | None:intergenic | 30.0% | |
| TTAGGTAAGAACAAGCATTA+AGG | - | chr5_1:64408275-64408294 | None:intergenic | 30.0% | |
| CTACATAAAGAGGTAATAGA+GGG | - | chr5_1:64408452-64408471 | None:intergenic | 30.0% | |
| CTCTATTACCTCTTTATGTA+GGG | + | chr5_1:64408451-64408470 | Msa0743890:CDS | 30.0% | |
| AGAATGAACTTCAAAAACTG+AGG | - | chr5_1:64409081-64409100 | None:intergenic | 30.0% | |
| TCTCAAACCATTAGGAAAAA+TGG | - | chr5_1:64409276-64409295 | None:intergenic | 30.0% | |
| !! | TTTGGATGAGATTTTGATGT+TGG | + | chr5_1:64409338-64409357 | Msa0743890:intron | 30.0% |
| ATAACTTACTAACTTGGTTG+TGG | - | chr5_1:64409457-64409476 | None:intergenic | 30.0% | |
| !!! | TTGTTCTTGACTGTTTTTGT+AGG | + | chr5_1:64409686-64409705 | Msa0743890:intron | 30.0% |
| !!! | ACTGTTTTTGTAGGAACAAA+TGG | + | chr5_1:64409695-64409714 | Msa0743890:intron | 30.0% |
| GAAAAAAATTTCCAGTTGGA+AGG | + | chr5_1:64409852-64409871 | Msa0743890:CDS | 30.0% | |
| GTACAAATTCTCAGATATTC+AGG | + | chr5_1:64409875-64409894 | Msa0743890:CDS | 30.0% | |
| TTCTTTGCAAATGCATATCT+GGG | + | chr5_1:64409972-64409991 | Msa0743890:CDS | 30.0% | |
| TTATAGTTCCCATCTTCTTT+AGG | - | chr5_1:64410002-64410021 | None:intergenic | 30.0% | |
| !!! | AAATTCACTAGTTTTGTGAG+AGG | + | chr5_1:64410035-64410054 | Msa0743890:CDS | 30.0% |
| !!! | AATTCACTAGTTTTGTGAGA+GGG | + | chr5_1:64410036-64410055 | Msa0743890:CDS | 30.0% |
| ! | TTGATAACTGCAATCCTTAA+GGG | + | chr5_1:64410347-64410366 | Msa0743890:CDS | 30.0% |
| ! | CAATTTCCTCATTCTTTTCA+GGG | - | chr5_1:64410499-64410518 | None:intergenic | 30.0% |
| ! | ACAATTTCCTCATTCTTTTC+AGG | - | chr5_1:64410500-64410519 | None:intergenic | 30.0% |
| ATAAACCCAAAATCGAACCT+GGG | + | chr5_1:64406976-64406995 | Msa0743890:CDS | 35.0% | |
| TTGAATTGGAGAGACTAATG+AGG | + | chr5_1:64407162-64407181 | Msa0743890:CDS | 35.0% | |
| TTCAAGCTGAAGAAGATTTG+AGG | + | chr5_1:64407186-64407205 | Msa0743890:CDS | 35.0% | |
| AGAAGATTTGAGGAAAAGAG+AGG | + | chr5_1:64407196-64407215 | Msa0743890:CDS | 35.0% | |
| TTAGTTGAAGGAGACATTGT+TGG | + | chr5_1:64407290-64407309 | Msa0743890:CDS | 35.0% | |
| CTAAGAACAAATACCCTCAT+TGG | - | chr5_1:64407579-64407598 | None:intergenic | 35.0% | |
| TACACACAAATATTCACACG+CGG | - | chr5_1:64407700-64407719 | None:intergenic | 35.0% | |
| TGTGTGTAATTATGTCCCTT+TGG | + | chr5_1:64407712-64407731 | Msa0743890:intron | 35.0% | |
| ACGTTGAAGGAGATTTAAGA+AGG | + | chr5_1:64407874-64407893 | Msa0743890:intron | 35.0% | |
| TTGAAGGAGATTTAAGAAGG+AGG | + | chr5_1:64407877-64407896 | Msa0743890:intron | 35.0% | |
| GATTAAAGGCTATCTTGTCT+AGG | - | chr5_1:64408021-64408040 | None:intergenic | 35.0% | |
| !! | TTTTCATGAGTGTTGTGGAT+GGG | - | chr5_1:64408192-64408211 | None:intergenic | 35.0% |
| !! | ATTTTCATGAGTGTTGTGGA+TGG | - | chr5_1:64408193-64408212 | None:intergenic | 35.0% |
| !! | ATGGATTTTCATGAGTGTTG+TGG | - | chr5_1:64408197-64408216 | None:intergenic | 35.0% |
| CCTACATAAAGAGGTAATAG+AGG | - | chr5_1:64408453-64408472 | None:intergenic | 35.0% | |
| CCTCTATTACCTCTTTATGT+AGG | + | chr5_1:64408450-64408469 | Msa0743890:CDS | 35.0% | |
| AATTGCAAGTCATACTGAAC+TGG | + | chr5_1:64408814-64408833 | Msa0743890:intron | 35.0% | |
| ATTGCAAGTCATACTGAACT+GGG | + | chr5_1:64408815-64408834 | Msa0743890:intron | 35.0% | |
| CAAAATCTCATCCAAACTGT+GGG | - | chr5_1:64409334-64409353 | None:intergenic | 35.0% | |
| TCAAAATCTCATCCAAACTG+TGG | - | chr5_1:64409335-64409354 | None:intergenic | 35.0% | |
| ! | ATGTTGGTTGTCGTGATTAT+GGG | + | chr5_1:64409354-64409373 | Msa0743890:intron | 35.0% |
| GTTATGCATCCAACTATTTC+AGG | + | chr5_1:64409426-64409445 | Msa0743890:intron | 35.0% | |
| ATAGGTCCTTGTTCTAACTT+TGG | + | chr5_1:64409650-64409669 | Msa0743890:intron | 35.0% | |
| TAGCATCCAAAGTTAGAACA+AGG | - | chr5_1:64409659-64409678 | None:intergenic | 35.0% | |
| TCTGACAACATTTGCAAAAG+AGG | + | chr5_1:64409926-64409945 | Msa0743890:CDS | 35.0% | |
| GTTCTTTGCAAATGCATATC+TGG | + | chr5_1:64409971-64409990 | Msa0743890:CDS | 35.0% | |
| ! | GTGTTCATTTGAAGCAAGAA+AGG | + | chr5_1:64410121-64410140 | Msa0743890:CDS | 35.0% |
| ATGATCAATGTTAGATCCCT+TGG | - | chr5_1:64410147-64410166 | None:intergenic | 35.0% | |
| ATCTTTCTTCCTAACCCAAT+CGG | - | chr5_1:64410204-64410223 | None:intergenic | 35.0% | |
| AAGTCTGACACATTTGAACA+CGG | - | chr5_1:64410308-64410327 | None:intergenic | 35.0% | |
| ! | TATCAAGGTTGCTTTCTGAA+GGG | - | chr5_1:64410333-64410352 | None:intergenic | 35.0% |
| ! | TTATCAAGGTTGCTTTCTGA+AGG | - | chr5_1:64410334-64410353 | None:intergenic | 35.0% |
| CTTAAGGATTGCAGTTATCA+AGG | - | chr5_1:64410348-64410367 | None:intergenic | 35.0% | |
| ! | CTTGATAACTGCAATCCTTA+AGG | + | chr5_1:64410346-64410365 | Msa0743890:CDS | 35.0% |
| ! | TGATCAACAAGCTTTGTGAA+AGG | + | chr5_1:64410462-64410481 | Msa0743890:CDS | 35.0% |
| ! | GATCAACAAGCTTTGTGAAA+GGG | + | chr5_1:64410463-64410482 | Msa0743890:CDS | 35.0% |
| CATAAACCCAAAATCGAACC+TGG | + | chr5_1:64406975-64406994 | Msa0743890:CDS | 40.0% | |
| ! | GAGCATTCAGGAACTTGTTT+CGG | + | chr5_1:64407034-64407053 | Msa0743890:CDS | 40.0% |
| AACTATGCGAAAGAGGGAAA+AGG | + | chr5_1:64407219-64407238 | Msa0743890:CDS | 40.0% | |
| ACTATGCGAAAGAGGGAAAA+GGG | + | chr5_1:64407220-64407239 | Msa0743890:CDS | 40.0% | |
| TGAGAAAGTTGAAGCGAAAG+TGG | + | chr5_1:64407360-64407379 | Msa0743890:CDS | 40.0% | |
| AAAGTTGAAGCGAAAGTGGT+TGG | + | chr5_1:64407364-64407383 | Msa0743890:CDS | 40.0% | |
| !! | GATTTTTCGATAGCTTGCCA+TGG | + | chr5_1:64407537-64407556 | Msa0743890:intron | 40.0% |
| ! | ATCGAACAAGTTGGACCAAA+GGG | - | chr5_1:64407730-64407749 | None:intergenic | 40.0% |
| ! | AATCGAACAAGTTGGACCAA+AGG | - | chr5_1:64407731-64407750 | None:intergenic | 40.0% |
| ! | TTTGGTCCAACTTGTTCGAT+TGG | + | chr5_1:64407730-64407749 | Msa0743890:intron | 40.0% |
| AATGGGACTTAAATGGGAAC+AGG | - | chr5_1:64407764-64407783 | None:intergenic | 40.0% | |
| TAGTTTCCGGGAATCAAATC+CGG | - | chr5_1:64407905-64407924 | None:intergenic | 40.0% | |
| ! | AAGGGAGAATGTTAGTTTCC+GGG | - | chr5_1:64407917-64407936 | None:intergenic | 40.0% |
| ! | GAAGGGAGAATGTTAGTTTC+CGG | - | chr5_1:64407918-64407937 | None:intergenic | 40.0% |
| !! | TTCTAGGACTCATCACTCTT+AGG | - | chr5_1:64408078-64408097 | None:intergenic | 40.0% |
| ACTTCTAGACTGCATAAGCA+TGG | - | chr5_1:64408216-64408235 | None:intergenic | 40.0% | |
| GAACTAAAAGAGCTAGGGTT+GGG | + | chr5_1:64408405-64408424 | Msa0743890:CDS | 40.0% | |
| AACTAAAAGAGCTAGGGTTG+GGG | + | chr5_1:64408406-64408425 | Msa0743890:CDS | 40.0% | |
| ATGCACCTATAGTAGATGAG+CGG | + | chr5_1:64408489-64408508 | Msa0743890:CDS | 40.0% | |
| TGACAACGTTCATATCTCAC+AGG | + | chr5_1:64408520-64408539 | Msa0743890:CDS | 40.0% | |
| TTGCAAGTCATACTGAACTG+GGG | + | chr5_1:64408816-64408835 | Msa0743890:intron | 40.0% | |
| !! | TTACTTGTTCCGTACTGACT+TGG | + | chr5_1:64408908-64408927 | Msa0743890:intron | 40.0% |
| !! | TGCAGTATAGTTGGTGATTG+AGG | + | chr5_1:64408983-64409002 | Msa0743890:intron | 40.0% |
| !! | AGTATAGTTGGTGATTGAGG+TGG | + | chr5_1:64408986-64409005 | Msa0743890:intron | 40.0% |
| !!! | GAGTTTTTGTTTTTGGGCGT+TGG | + | chr5_1:64409019-64409038 | Msa0743890:intron | 40.0% |
| CTTTCAGCTCTCAAACCATT+AGG | - | chr5_1:64409284-64409303 | None:intergenic | 40.0% | |
| TTTCTTTCCTTCCCACAGTT+TGG | + | chr5_1:64409320-64409339 | Msa0743890:intron | 40.0% | |
| ! | GATGTTGGTTGTCGTGATTA+TGG | + | chr5_1:64409353-64409372 | Msa0743890:intron | 40.0% |
| GCATCCAACTATTTCAGGAA+AGG | + | chr5_1:64409431-64409450 | Msa0743890:intron | 40.0% | |
| GATGCACGAGTATGATGAAA+TGG | + | chr5_1:64409571-64409590 | Msa0743890:intron | 40.0% | |
| ACTAGGCATGCTTGTGTTAA+GGG | + | chr5_1:64409612-64409631 | Msa0743890:intron | 40.0% | |
| AAAGGAACTAGATGAGACGT+TGG | - | chr5_1:64409757-64409776 | None:intergenic | 40.0% | |
| ACTTCGAATAGTGCTCTTGA+TGG | - | chr5_1:64409806-64409825 | None:intergenic | 40.0% | |
| ! | AGAGCACTATTCGAAGTTTC+TGG | + | chr5_1:64409809-64409828 | Msa0743890:CDS | 40.0% |
| AGAATTTGTACCCTTCCAAC+TGG | - | chr5_1:64409866-64409885 | None:intergenic | 40.0% | |
| ! | AATGATAGTGACCAGAGGAT+GGG | + | chr5_1:64409899-64409918 | Msa0743890:CDS | 40.0% |
| TAGTTCCCATCTTCTTTAGG+AGG | - | chr5_1:64409999-64410018 | None:intergenic | 40.0% | |
| !!! | TAGTTTTGTGAGAGGGAAGA+AGG | + | chr5_1:64410043-64410062 | Msa0743890:CDS | 40.0% |
| ! | ATTTGAAGCAAGAAAGGCCA+AGG | + | chr5_1:64410127-64410146 | Msa0743890:CDS | 40.0% |
| ! | TTTGAAGCAAGAAAGGCCAA+GGG | + | chr5_1:64410128-64410147 | Msa0743890:CDS | 40.0% |
| GGGATCTAACATTGATCATC+AGG | + | chr5_1:64410148-64410167 | Msa0743890:CDS | 40.0% | |
| AGATTCTTAGTACTCTGTGC+AGG | + | chr5_1:64410171-64410190 | Msa0743890:CDS | 40.0% | |
| ! | GATTGGGTTAGGAAGAAAGA+TGG | + | chr5_1:64410203-64410222 | Msa0743890:CDS | 40.0% |
| ! | ATCAAGGTTGCTTTCTGAAG+GGG | - | chr5_1:64410332-64410351 | None:intergenic | 40.0% |
| ! | GCATGGTTTATGTAGCTTGT+GGG | - | chr5_1:64410437-64410456 | None:intergenic | 40.0% |
| TGCATGGTTTATGTAGCTTG+TGG | - | chr5_1:64410438-64410457 | None:intergenic | 40.0% | |
| ! | GCTTGTTGATCAATGATGCA+TGG | - | chr5_1:64410454-64410473 | None:intergenic | 40.0% |
| ! | GACAACCCAGGTTCGATTTT+GGG | - | chr5_1:64406984-64407003 | None:intergenic | 45.0% |
| ! | AGACAACCCAGGTTCGATTT+TGG | - | chr5_1:64406985-64407004 | None:intergenic | 45.0% |
| CTTGGAAGACATGAGCATTC+AGG | + | chr5_1:64407022-64407041 | Msa0743890:CDS | 45.0% | |
| AGAGAGGAACTATGCGAAAG+AGG | + | chr5_1:64407212-64407231 | Msa0743890:CDS | 45.0% | |
| GAGAGGAACTATGCGAAAGA+GGG | + | chr5_1:64407213-64407232 | Msa0743890:CDS | 45.0% | |
| GATGATAGCAATGCTGCTCA+AGG | + | chr5_1:64407386-64407405 | Msa0743890:CDS | 45.0% | |
| GCTCAAGGTGAATCATCATC+TGG | + | chr5_1:64407401-64407420 | Msa0743890:CDS | 45.0% | |
| CAATCGCCAATCGAACAAGT+TGG | - | chr5_1:64407739-64407758 | None:intergenic | 45.0% | |
| ! | CAACTTGTTCGATTGGCGAT+TGG | + | chr5_1:64407737-64407756 | Msa0743890:intron | 45.0% |
| AGATAAACACTTCCCCGCAT+AGG | + | chr5_1:64407828-64407847 | Msa0743890:intron | 45.0% | |
| TAGCTCGGTTGTTGAGCTAA+AGG | + | chr5_1:64407851-64407870 | Msa0743890:intron | 45.0% | |
| GTTGAGCTAAAGGACGTTGA+AGG | + | chr5_1:64407861-64407880 | Msa0743890:intron | 45.0% | |
| GAGATTTAAGAAGGAGGTCC+CGG | + | chr5_1:64407883-64407902 | Msa0743890:intron | 45.0% | |
| AGTTTCCGGGAATCAAATCC+GGG | - | chr5_1:64407904-64407923 | None:intergenic | 45.0% | |
| GGCACGAACTAAAAGAGCTA+GGG | + | chr5_1:64408400-64408419 | Msa0743890:CDS | 45.0% | |
| CGAACTAAAAGAGCTAGGGT+TGG | + | chr5_1:64408404-64408423 | Msa0743890:CDS | 45.0% | |
| AGAGGGTTCACGTCCAAAAT+GGG | - | chr5_1:64408435-64408454 | None:intergenic | 45.0% | |
| TAGAGGGTTCACGTCCAAAA+TGG | - | chr5_1:64408436-64408455 | None:intergenic | 45.0% | |
| TCTTGCCGCTCATCTACTAT+AGG | - | chr5_1:64408497-64408516 | None:intergenic | 45.0% | |
| CAACGTTCATATCTCACAGG+AGG | + | chr5_1:64408523-64408542 | Msa0743890:CDS | 45.0% | |
| !! | AGAATGAGGCCAAAAGCGTT+TGG | - | chr5_1:64408869-64408888 | None:intergenic | 45.0% |
| ! | AAACGCTTTTGGCCTCATTC+TGG | + | chr5_1:64408868-64408887 | Msa0743890:intron | 45.0% |
| CAGTTAAGCACTCCAGAATG+AGG | - | chr5_1:64408883-64408902 | None:intergenic | 45.0% | |
| AGGCTTTGCATAAGAGAGGT+AGG | - | chr5_1:64409126-64409145 | None:intergenic | 45.0% | |
| GAGAAGGCTTTGCATAAGAG+AGG | - | chr5_1:64409130-64409149 | None:intergenic | 45.0% | |
| GAGAATGGTTGTGCGACATT+GGG | - | chr5_1:64409190-64409209 | None:intergenic | 45.0% | |
| AGAGAATGGTTGTGCGACAT+TGG | - | chr5_1:64409191-64409210 | None:intergenic | 45.0% | |
| ATCTCATCCAAACTGTGGGA+AGG | - | chr5_1:64409330-64409349 | None:intergenic | 45.0% | |
| GTTGTCGTGATTATGGGTAC+TGG | + | chr5_1:64409360-64409379 | Msa0743890:intron | 45.0% | |
| GTGGCCTTTCCTGAAATAGT+TGG | - | chr5_1:64409438-64409457 | None:intergenic | 45.0% | |
| GACTAGGCATGCTTGTGTTA+AGG | + | chr5_1:64409611-64409630 | Msa0743890:intron | 45.0% | |
| CTAGGCATGCTTGTGTTAAG+GGG | + | chr5_1:64409613-64409632 | Msa0743890:intron | 45.0% | |
| GGGGATGGTTACTTGTTCAT+AGG | + | chr5_1:64409632-64409651 | Msa0743890:intron | 45.0% | |
| ! | CAATGATAGTGACCAGAGGA+TGG | + | chr5_1:64409898-64409917 | Msa0743890:CDS | 45.0% |
| ! | ATGATAGTGACCAGAGGATG+GGG | + | chr5_1:64409900-64409919 | Msa0743890:CDS | 45.0% |
| TGGGTCCTCCTAAAGAAGAT+GGG | + | chr5_1:64409991-64410010 | Msa0743890:CDS | 45.0% | |
| CACATTTGAACACGGAAGCA+AGG | - | chr5_1:64410300-64410319 | None:intergenic | 45.0% | |
| ! | GAAGGTCATTTGCTAGGAGA+CGG | - | chr5_1:64410391-64410410 | None:intergenic | 45.0% |
| GTCTCCTAGCAAATGACCTT+CGG | + | chr5_1:64410390-64410409 | Msa0743890:CDS | 45.0% | |
| TCTCCTAGCAAATGACCTTC+GGG | + | chr5_1:64410391-64410410 | Msa0743890:CDS | 45.0% | |
| ! | ACAAGCTTTGTGAAAGGGTG+AGG | + | chr5_1:64410468-64410487 | Msa0743890:CDS | 45.0% |
| ! | CAAGCTTTGTGAAAGGGTGA+GGG | + | chr5_1:64410469-64410488 | Msa0743890:CDS | 45.0% |
| GGTGTACCCTGAAAAGAATG+AGG | + | chr5_1:64410490-64410509 | Msa0743890:CDS | 45.0% | |
| TCTATCCATTTCACGGTGAC+TGG | - | chr5_1:64410536-64410555 | None:intergenic | 45.0% | |
| TGGTCATTCGAAGACAACCC+AGG | - | chr5_1:64406996-64407015 | None:intergenic | 50.0% | |
| ACACGCGGTATACACACTAC+AGG | - | chr5_1:64407685-64407704 | None:intergenic | 50.0% | |
| AACAACCGAGCTACCTATGC+GGG | - | chr5_1:64407844-64407863 | None:intergenic | 50.0% | |
| CAACAACCGAGCTACCTATG+CGG | - | chr5_1:64407845-64407864 | None:intergenic | 50.0% | |
| CGGCACGAACTAAAAGAGCT+AGG | + | chr5_1:64408399-64408418 | Msa0743890:CDS | 50.0% | |
| TGCACGCTCCCTACATAAAG+AGG | - | chr5_1:64408462-64408481 | None:intergenic | 50.0% | |
| ATACCTGCACGTCTGATGGA+GGG | - | chr5_1:64408574-64408593 | None:intergenic | 50.0% | |
| CATCATACCTGCACGTCTGA+TGG | - | chr5_1:64408578-64408597 | None:intergenic | 50.0% | |
| !! | TGCAAAGAGGCACTCCAATG+CGG | - | chr5_1:64408934-64408953 | None:intergenic | 50.0% |
| TGTGCGCTAAGCATGCAAAG+AGG | - | chr5_1:64408947-64408966 | None:intergenic | 50.0% | |
| ! | ATCTTTGCCTGGGTTGAGGA+GGG | - | chr5_1:64409152-64409171 | None:intergenic | 50.0% |
| ! | AATCTTTGCCTGGGTTGAGG+AGG | - | chr5_1:64409153-64409172 | None:intergenic | 50.0% |
| CAGAATCTTTGCCTGGGTTG+AGG | - | chr5_1:64409156-64409175 | None:intergenic | 50.0% | |
| GGTGGTCAGAATCTTTGCCT+GGG | - | chr5_1:64409162-64409181 | None:intergenic | 50.0% | |
| AGGTGGTCAGAATCTTTGCC+TGG | - | chr5_1:64409163-64409182 | None:intergenic | 50.0% | |
| GCATGCTTGTGTTAAGGGGA+TGG | + | chr5_1:64409617-64409636 | Msa0743890:intron | 50.0% | |
| GGAACTAGATGAGACGTTGG+TGG | - | chr5_1:64409754-64409773 | None:intergenic | 50.0% | |
| ! | CAGGCAATGATAGTGACCAG+AGG | + | chr5_1:64409894-64409913 | Msa0743890:CDS | 50.0% |
| ! | TGATAGTGACCAGAGGATGG+GGG | + | chr5_1:64409901-64409920 | Msa0743890:CDS | 50.0% |
| CTGGGTCCTCCTAAAGAAGA+TGG | + | chr5_1:64409990-64410009 | Msa0743890:CDS | 50.0% | |
| ATGCTTTAGCAGTGGGTGTC+AGG | - | chr5_1:64410256-64410275 | None:intergenic | 50.0% | |
| TGACACCCACTGCTAAAGCA+TGG | + | chr5_1:64410255-64410274 | Msa0743890:CDS | 50.0% | |
| GACACCCACTGCTAAAGCAT+GGG | + | chr5_1:64410256-64410275 | Msa0743890:CDS | 50.0% | |
| GTTGCCCATGCTTTAGCAGT+GGG | - | chr5_1:64410263-64410282 | None:intergenic | 50.0% | |
| TGTTGCCCATGCTTTAGCAG+TGG | - | chr5_1:64410264-64410283 | None:intergenic | 50.0% | |
| !! | CATTGACTGGTTCGCCCTTA+AGG | - | chr5_1:64410364-64410383 | None:intergenic | 50.0% |
| AAGGGCGAACCAGTCAATGT+CGG | + | chr5_1:64410365-64410384 | Msa0743890:CDS | 50.0% | |
| !! | TTCACGGTGACTGGTCTAGA+TGG | - | chr5_1:64410527-64410546 | None:intergenic | 50.0% |
| CTAGACCAGTCACCGTGAAA+TGG | + | chr5_1:64410528-64410547 | Msa0743890:CDS | 50.0% | |
| ACTTCCCCGCATAGGTAGCT+CGG | + | chr5_1:64407836-64407855 | Msa0743890:intron | 55.0% | |
| ACAACCGAGCTACCTATGCG+GGG | - | chr5_1:64407843-64407862 | None:intergenic | 55.0% | |
| GAGGTCCCGGATTTGATTCC+CGG | + | chr5_1:64407896-64407915 | Msa0743890:intron | 55.0% | |
| ! | AGGGTTGGGGTTGCCCATTT+TGG | + | chr5_1:64408419-64408438 | Msa0743890:CDS | 55.0% |
| CATACCTGCACGTCTGATGG+AGG | - | chr5_1:64408575-64408594 | None:intergenic | 55.0% | |
| ! | GGGCACGTTCCAAACGCTTT+TGG | + | chr5_1:64408857-64408876 | Msa0743890:intron | 55.0% |
| CCAATGCGGCCAAGTCAGTA+CGG | - | chr5_1:64408920-64408939 | None:intergenic | 55.0% | |
| TGCATGCTTAGCGCACATGC+TGG | + | chr5_1:64408950-64408969 | Msa0743890:intron | 55.0% | |
| CGCGCTGAGTGCAGTATAGT+TGG | + | chr5_1:64408974-64408993 | Msa0743890:intron | 55.0% | |
| GTTGTGCGACATTGGGCATG+AGG | - | chr5_1:64409183-64409202 | None:intergenic | 55.0% | |
| TTCCTAACCCAATCGGCCTC+GGG | - | chr5_1:64410197-64410216 | None:intergenic | 55.0% | |
| CTTCCTAACCCAATCGGCCT+CGG | - | chr5_1:64410198-64410217 | None:intergenic | 55.0% | |
| TGGCCCGAAGGTCATTTGCT+AGG | - | chr5_1:64410397-64410416 | None:intergenic | 55.0% | |
| GGGAGAAGAACAGTTCGCTG+TGG | - | chr5_1:64410417-64410436 | None:intergenic | 55.0% | |
| !! | CGGTGTCGCGTACAGCGTTT+CGG | + | chr5_1:64407054-64407073 | Msa0743890:CDS | 60.0% |
| TGACCCTCCATCAGACGTGC+AGG | + | chr5_1:64408568-64408587 | Msa0743890:CDS | 60.0% | |
| GGCTTCCACCTGTGCGCTTA+GGG | + | chr5_1:64408837-64408856 | Msa0743890:intron | 60.0% | |
| !! | CCGTACTGACTTGGCCGCAT+TGG | + | chr5_1:64408917-64408936 | Msa0743890:intron | 60.0% |
| !!! | GTTTTTGGGCGTTGGAGCGC+AGG | + | chr5_1:64409027-64409046 | Msa0743890:intron | 60.0% |
| GTGCGACATTGGGCATGAGG+TGG | - | chr5_1:64409180-64409199 | None:intergenic | 60.0% | |
| TGTCAGATGCCCCCATCCTC+TGG | - | chr5_1:64409913-64409932 | None:intergenic | 60.0% | |
| TAGTACTCTGTGCAGGCCCG+AGG | + | chr5_1:64410178-64410197 | Msa0743890:CDS | 60.0% | |
| AGGAGACGGCCGACATTGAC+TGG | - | chr5_1:64410377-64410396 | None:intergenic | 60.0% | |
| AACAGTTCGCTGTGGCCCGA+AGG | - | chr5_1:64410409-64410428 | None:intergenic | 60.0% | |
| GGGCTTCCACCTGTGCGCTT+AGG | + | chr5_1:64408836-64408855 | Msa0743890:intron | 65.0% | |
| ACGTGCCCTAAGCGCACAGG+TGG | - | chr5_1:64408845-64408864 | None:intergenic | 65.0% | |
| GGAACGTGCCCTAAGCGCAC+AGG | - | chr5_1:64408848-64408867 | None:intergenic | 65.0% | |
| !! | TTTGGGCGTTGGAGCGCAGG+AGG | + | chr5_1:64409030-64409049 | Msa0743890:intron | 65.0% |
| !! | TTGGGCGTTGGAGCGCAGGA+GGG | + | chr5_1:64409031-64409050 | Msa0743890:intron | 65.0% |
| GCCTTCTCCCTCCTCAACCC+AGG | + | chr5_1:64409142-64409161 | Msa0743890:intron | 65.0% | |
| ! | GCCTGGGTTGAGGAGGGAGA+AGG | - | chr5_1:64409146-64409165 | None:intergenic | 65.0% |
| CGCGCTGGGGTTCTGCTGCA+TGG | + | chr5_1:64409055-64409074 | Msa0743890:intron | 70.0% | |
| TGTGCAGGCCCGAGGCCGAT+TGG | + | chr5_1:64410186-64410205 | Msa0743890:CDS | 70.0% | |
| GTGCAGGCCCGAGGCCGATT+GGG | + | chr5_1:64410187-64410206 | Msa0743890:CDS | 70.0% | |
| GGCCCGAGGCCGATTGGGTT+AGG | + | chr5_1:64410192-64410211 | Msa0743890:CDS | 70.0% | |
| GAGCGCAGGAGGGACGCGCT+GGG | + | chr5_1:64409041-64409060 | Msa0743890:intron | 75.0% | |
| AGCGCAGGAGGGACGCGCTG+GGG | + | chr5_1:64409042-64409061 | Msa0743890:intron | 75.0% | |
| ! | GGAGCGCAGGAGGGACGCGC+TGG | + | chr5_1:64409040-64409059 | Msa0743890:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 64406969 | 64410577 | 64406969 | ID=Msa0743890;Name=Msa0743890 |
| chr5_1 | mRNA | 64406969 | 64410577 | 64406969 | ID=Msa0743890-mRNA-1;Parent=Msa0743890;Name=Msa0743890-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0|1|1|1|3|0|505 |
| chr5_1 | exon | 64406969 | 64407422 | 64406969 | ID=Msa0743890-mRNA-1:exon:19051;Parent=Msa0743890-mRNA-1 |
| chr5_1 | exon | 64408396 | 64408589 | 64408396 | ID=Msa0743890-mRNA-1:exon:19052;Parent=Msa0743890-mRNA-1 |
| chr5_1 | exon | 64409708 | 64410577 | 64409708 | ID=Msa0743890-mRNA-1:exon:19053;Parent=Msa0743890-mRNA-1 |
| chr5_1 | CDS | 64406969 | 64407422 | 64406969 | ID=Msa0743890-mRNA-1:cds;Parent=Msa0743890-mRNA-1 |
| chr5_1 | CDS | 64408396 | 64408589 | 64408396 | ID=Msa0743890-mRNA-1:cds;Parent=Msa0743890-mRNA-1 |
| chr5_1 | CDS | 64409708 | 64410577 | 64409708 | ID=Msa0743890-mRNA-1:cds;Parent=Msa0743890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
