AlfalfaGEDB | Msa0890320

M. sativa cultivar zhongmu-4 / Msa0890320

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771
PFAM: PF00403.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0890320	PNY08923.1	100.000	140	0	0	1	140	1	140	2.42e-100	293

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0890320	sp\|Q84K70\|HIP31_ARATH	75.714	140	34	0	1	140	1	140	3.88e-65	197

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0890320	A0A2K3P106	100.000	140	0	0	1	140	1	140	1.16e-100	293

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000190	Msa0890320	0.828618	8.135964e-55	-8.615850e-47
Msa0017510	Msa0890320	0.832310	1.016966e-55	-8.615850e-47
Msa0024550	Msa0890320	0.823941	1.056267e-53	-8.615850e-47
Msa0026800	Msa0890320	0.801476	8.845009e-49	-8.615850e-47
Msa0028640	Msa0890320	0.804634	1.965692e-49	-8.615850e-47
Msa0089630	Msa0890320	0.811780	5.898176e-51	-8.615850e-47
Msa0112570	Msa0890320	0.829648	4.577775e-55	-8.615850e-47
Msa0120400	Msa0890320	0.811520	6.719674e-51	-8.615850e-47
Msa0669320	Msa0890320	0.815242	1.021959e-51	-8.615850e-47
Msa0678930	Msa0890320	0.820934	5.275593e-53	-8.615850e-47
Msa0741240	Msa0890320	0.801563	8.488694e-49	-8.615850e-47
Msa0769180	Msa0890320	0.805477	1.310005e-49	-8.615850e-47
Msa0786500	Msa0890320	0.844850	5.854846e-59	-8.615850e-47
Msa0816150	Msa0890320	0.851220	1.022933e-60	-8.615850e-47
Msa0822870	Msa0890320	0.830017	3.721041e-55	-8.615850e-47
Msa0824840	Msa0890320	0.823367	1.439139e-53	-8.615850e-47
Msa0122040	Msa0890320	0.811522	6.713227e-51	-8.615850e-47
Msa0124280	Msa0890320	0.802259	6.108126e-49	-8.615850e-47
Msa0139060	Msa0890320	0.831053	2.075161e-55	-8.615850e-47
Msa0157290	Msa0890320	0.832255	1.049481e-55	-8.615850e-47
Msa0158600	Msa0890320	0.804524	2.072612e-49	-8.615850e-47
Msa0164330	Msa0890320	0.801620	8.262829e-49	-8.615850e-47
Msa0200260	Msa0890320	0.828447	8.947351e-55	-8.615850e-47
Msa0230740	Msa0890320	0.825661	4.151649e-54	-8.615850e-47
Msa0392420	Msa0890320	0.831037	2.094989e-55	-8.615850e-47
Msa0392460	Msa0890320	0.822657	2.106506e-53	-8.615850e-47
Msa0392490	Msa0890320	0.831848	1.322598e-55	-8.615850e-47
Msa0392510	Msa0890320	0.813238	2.832206e-51	-8.615850e-47
Msa0406120	Msa0890320	0.853494	2.302345e-61	-8.615850e-47
Msa0436780	Msa0890320	0.807068	6.055165e-50	-8.615850e-47
Msa0453120	Msa0890320	0.814732	1.326118e-51	-8.615850e-47
Msa0243100	Msa0890320	0.809960	1.461180e-50	-8.615850e-47
Msa0261340	Msa0890320	0.809072	2.266971e-50	-8.615850e-47
Msa0344570	Msa0890320	0.805160	1.526468e-49	-8.615850e-47
Msa0357340	Msa0890320	0.816950	4.246478e-52	-8.615850e-47
Msa0363070	Msa0890320	0.804480	2.117345e-49	-8.615850e-47
Msa0487570	Msa0890320	0.834619	2.699844e-56	-8.615850e-47
Msa0487630	Msa0890320	0.842184	3.019218e-58	-8.615850e-47
Msa0602240	Msa0890320	0.803381	3.581318e-49	-8.615850e-47
Msa0602250	Msa0890320	0.801655	8.126047e-49	-8.615850e-47
Msa0861870	Msa0890320	0.810772	9.760174e-51	-8.615850e-47
Msa0876550	Msa0890320	0.803044	4.206777e-49	-8.615850e-47
Msa0876560	Msa0890320	0.805656	1.201518e-49	-8.615850e-47
Msa0880140	Msa0890320	0.827125	1.859191e-54	-8.615850e-47
Msa0888420	Msa0890320	0.819835	9.427261e-53	-8.615850e-47
Msa0890320	Msa0925180	0.854683	1.045302e-61	-8.615850e-47
Msa0890320	Msa0955080	0.844811	5.999477e-59	-8.615850e-47
Msa0890320	Msa0967380	0.801534	8.604297e-49	-8.615850e-47
Msa0890320	Msa0981370	0.837816	4.156705e-57	-8.615850e-47
Msa0890320	Msa0990540	0.829287	5.600531e-55	-8.615850e-47
Msa0890320	Msa1019000	0.804444	2.154303e-49	-8.615850e-47
Msa0890320	Msa1019430	0.818838	1.590292e-52	-8.615850e-47
Msa0890320	Msa1019470	0.805011	1.640127e-49	-8.615850e-47
Msa0890320	Msa1024240	0.817212	3.706684e-52	-8.615850e-47
Msa0890320	Msa1125000	0.807533	4.825783e-50	-8.615850e-47
Msa0890320	Msa1270240	0.802750	4.838497e-49	-8.615850e-47
Msa0890320	Msa1324500	0.801669	8.072977e-49	-8.615850e-47
Msa0890320	Msa1366340	0.805000	1.649057e-49	-8.615850e-47
Msa0890320	Msa1372230	0.807203	5.670181e-50	-8.615850e-47
Msa0890320	Msa1374550	0.845400	4.158040e-59	-8.615850e-47
Msa0890320	Msa1433120	0.822740	2.015107e-53	-8.615850e-47
Msa0890320	Msa1438250	0.849915	2.380306e-60	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0890320	MtrunA17_Chr6g0471231	99.286	140	1	0	1	140	1	140	5.48e-104	293
Msa0890320	MtrunA17_Chr2g0325601	39.597	149	69	8	4	140	3	142	4.14e-25	93.2
Msa0890320	MtrunA17_Chr3g0124411	38.235	136	69	4	5	140	32	152	1.83e-22	86.7
Msa0890320	MtrunA17_Chr3g0145621	35.664	143	71	6	5	140	28	156	3.74e-22	86.3
Msa0890320	MtrunA17_Chr1g0160201	36.029	136	72	5	5	140	27	147	5.90e-22	85.5
Msa0890320	MtrunA17_Chr3g0115421	37.405	131	67	4	11	140	33	149	6.83e-22	85.1
Msa0890320	MtrunA17_Chr5g0405811	38.028	142	71	6	3	140	29	157	8.78e-22	85.1
Msa0890320	MtrunA17_Chr4g0036931	37.589	141	73	4	3	140	28	156	2.49e-21	84.0
Msa0890320	MtrunA17_Chr8g0382721	36.957	138	70	5	5	140	31	153	6.16e-21	82.8
Msa0890320	MtrunA17_Chr5g0407821	34.058	138	72	6	5	140	25	145	5.29e-20	80.1
Msa0890320	MtrunA17_Chr1g0189221	42.391	92	43	3	5	96	55	136	7.33e-18	75.5
Msa0890320	MtrunA17_Chr6g0448861	35.461	141	69	7	5	140	32	155	3.09e-17	73.2
Msa0890320	MtrunA17_Chr7g0251491	31.655	139	74	7	5	140	50	170	5.58e-16	70.5
Msa0890320	MtrunA17_Chr6g0460361	39.474	114	59	7	30	140	4	110	1.49e-13	62.8
Msa0890320	MtrunA17_Chr5g0422891	29.412	136	81	5	5	140	27	147	7.19e-13	61.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0890320	AT3G48970.1	75.714	140	34	0	1	140	1	140	3.95e-66	197
Msa0890320	AT3G48970.2	76.471	136	32	0	5	140	3	138	6.98e-65	194
Msa0890320	AT3G48970.3	76.471	136	32	0	5	140	3	138	6.98e-65	194
Msa0890320	AT3G56891.1	36.364	154	79	4	3	140	16	166	4.43e-28	102
Msa0890320	AT3G56891.2	36.552	145	74	3	12	140	1	143	8.50e-28	100
Msa0890320	AT4G08570.1	40.876	137	66	5	5	140	28	150	1.04e-24	92.8
Msa0890320	AT2G18196.2	37.879	132	68	4	14	140	3	125	8.22e-24	89.7
Msa0890320	AT2G18196.1	37.879	132	68	4	14	140	56	178	4.80e-23	89.4
Msa0890320	AT1G06330.1	37.342	158	66	9	5	140	4	150	6.18e-23	88.2
Msa0890320	AT1G71050.1	37.984	129	68	3	12	140	36	152	2.76e-22	86.7
Msa0890320	AT5G66110.3	37.857	140	70	5	5	140	21	147	1.39e-20	82.0
Msa0890320	AT5G66110.1	37.857	140	70	5	5	140	21	147	1.39e-20	82.0
Msa0890320	AT5G66110.2	37.594	133	67	4	12	140	1	121	3.05e-20	80.5
Msa0890320	AT4G35060.1	37.324	142	72	5	3	140	25	153	4.60e-20	80.9
Msa0890320	AT4G10465.1	37.410	139	76	5	5	140	53	183	1.04e-19	80.9
Msa0890320	AT1G22990.1	37.226	137	70	7	5	140	31	152	1.50e-19	79.7
Msa0890320	AT1G22990.2	37.692	130	66	6	12	140	32	147	2.06e-19	79.0
Msa0890320	AT4G39700.1	38.849	139	68	5	5	140	34	158	5.91e-19	78.2
Msa0890320	AT4G38580.1	32.857	140	80	3	3	140	26	153	3.36e-18	76.3
Msa0890320	AT4G38580.2	32.857	140	80	3	3	140	26	153	3.36e-18	76.3
Msa0890320	AT5G17450.1	35.766	137	72	6	5	140	28	149	9.45e-18	74.7
Msa0890320	AT1G29100.2	33.333	153	83	7	1	140	1	147	1.93e-16	71.6
Msa0890320	AT1G29100.1	32.653	147	80	7	7	140	1	141	5.04e-14	65.1
Msa0890320	AT5G17450.2	37.500	112	55	5	30	140	8	105	8.99e-13	60.8

Find 42 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGTACCAATAACTGTTTAAA+AGG	0.123298	6_1:+63270148	Msa0890320:five_prime_UTR
AAAGCTCTCTTCAAACTTAA+AGG	0.212136	6_1:+63270507	Msa0890320:CDS
GAAGGAGTATGCCTCAAATA+TGG	0.262354	6_1:+63270058	Msa0890320:five_prime_UTR
GTTGTGGTGTGGTCACTGTT+TGG	0.360321	6_1:-63270223	None:intergenic
AGATGATGTAGAAGTTGAAA+TGG	0.361767	6_1:+63271374	Msa0890320:CDS
TTGTGGTGTGGTCACTGTTT+GGG	0.363498	6_1:-63270222	None:intergenic
CACCCTTCACAATCAAGATT+TGG	0.367580	6_1:-63270468	None:intergenic
AAAATGAAGCAAAATGAGTA+TGG	0.404963	6_1:-63271503	None:intergenic
TGAGTATGGCCCGGTAGAAA+TGG	0.409085	6_1:-63271489	None:intergenic
AGAGCCATGGCCATTTCTAC+CGG	0.422803	6_1:+63271479	Msa0890320:CDS
AAGGAGTATGCCTCAAATAT+GGG	0.432186	6_1:+63270059	Msa0890320:five_prime_UTR
GAACAAAGTGTCGTTGTTGT+TGG	0.442412	6_1:-63270196	None:intergenic
TACAAAAGTGAAGCAACAAA+TGG	0.472564	6_1:+63271570	Msa0890320:CDS
GTACCAATAACTGTTTAAAA+GGG	0.475755	6_1:+63270149	Msa0890320:five_prime_UTR
TTACTAAAGTGTTCTTTGAA+AGG	0.492784	6_1:-63270173	None:intergenic
AAGATAACAGTCAGAGGCTA+TGG	0.503785	6_1:+63271405	Msa0890320:CDS
TTGAAAGCAATCAAACGTGC+AGG	0.508044	6_1:+63271447	Msa0890320:CDS
TAATGATTAACAATGTAACT+TGG	0.510139	6_1:-63271534	None:intergenic
CTTGCACTATAATGTAAGCT+AGG	0.522795	6_1:+63271688	Msa0890320:exon
TACATTATAGTGCAAGCATG+AGG	0.547669	6_1:-63271681	None:intergenic
AGTTGCTGTTGCATCTGATG+AGG	0.552668	6_1:+63271629	Msa0890320:CDS
ATTGTTGTAGAATATGGTTG+AGG	0.553241	6_1:+63270437	Msa0890320:intron
CAGGGAAAGCAGCAGAGCCA+TGG	0.556682	6_1:+63271466	Msa0890320:CDS
GTACCAAATCTTGATTGTGA+AGG	0.573579	6_1:+63270465	Msa0890320:CDS
GAGCCATGGCCATTTCTACC+GGG	0.573615	6_1:+63271480	Msa0890320:CDS
AAGAGGTGAAAGTTTGAGTG+AGG	0.574908	6_1:+63271768	Msa0890320:three_prime_UTR
TACCAAATCTTGATTGTGAA+GGG	0.580631	6_1:+63270466	Msa0890320:CDS
AAGAGAGTTGTGTTCTGTTG+TGG	0.581126	6_1:-63270239	None:intergenic
GAAGCAAAATGAGTATGGCC+CGG	0.593575	6_1:-63271498	None:intergenic
AGGAGTATGCCTCAAATATG+GGG	0.603014	6_1:+63270060	Msa0890320:five_prime_UTR
CATAATGAGAGACAAGGTGA+AGG	0.610425	6_1:+63270040	Msa0890320:five_prime_UTR
CAGCAACTGAATAAACAGAA+GGG	0.615737	6_1:-63271614	None:intergenic
TGATGTAGAAGTTGAAATGG+AGG	0.626665	6_1:+63271377	Msa0890320:CDS
AGCAACTGAATAAACAGAAG+GGG	0.630032	6_1:-63271613	None:intergenic
ACAGCAACTGAATAAACAGA+AGG	0.630530	6_1:-63271615	None:intergenic
AGTTGTGTTCTGTTGTGGTG+TGG	0.634601	6_1:-63270234	None:intergenic
ACATTATAGTGCAAGCATGA+GGG	0.647161	6_1:-63271680	None:intergenic
TGAAAGCAATCAAACGTGCA+GGG	0.647389	6_1:+63271448	Msa0890320:CDS
TGGCCCGGTAGAAATGGCCA+TGG	0.647640	6_1:-63271483	None:intergenic
GCACAAAAGATAACAGTCAG+AGG	0.657965	6_1:+63271399	Msa0890320:CDS
ATGAGACATAATGAGAGACA+AGG	0.689159	6_1:+63270034	None:intergenic
GGAGTATGCCTCAAATATGG+GGG	0.690405	6_1:+63270061	Msa0890320:five_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTAAAGAAAAAATAATACTT+TGG	+	chr6_1:63271036-63271055	Msa0890320:intron	10.0%
!!	TTAAAGAAAAAATAATACTT+TGG	+	chr6_1:63271036-63271055	Msa0890320:intron	10.0%
!!	AATTAAATTATGACTAATGT+TGG	+	chr6_1:63270399-63270418	Msa0890320:intron	15.0%
!!!	TTCATATAACATATTTTGTT+CGG	+	chr6_1:63270751-63270770	Msa0890320:intron	15.0%
!!!	TTTGATTTGTTAAAAAATGA+AGG	+	chr6_1:63270809-63270828	Msa0890320:intron	15.0%
!!!	AGACAAAATTAATGTTATTT+TGG	-	chr6_1:63270992-63271011	None:intergenic	15.0%
!!	TCATTGTCTTAAATTATTAA+TGG	+	chr6_1:63271141-63271160	Msa0890320:intron	15.0%
!!!	TTTTTACTTATAATAGTGAT+CGG	-	chr6_1:63271204-63271223	None:intergenic	15.0%
!!	AATTAAATTATGACTAATGT+TGG	+	chr6_1:63270399-63270418	Msa0890320:intron	15.0%
!!!	TTCATATAACATATTTTGTT+CGG	+	chr6_1:63270751-63270770	Msa0890320:intron	15.0%
!!!	TTTGATTTGTTAAAAAATGA+AGG	+	chr6_1:63270809-63270828	Msa0890320:intron	15.0%
!!!	AGACAAAATTAATGTTATTT+TGG	-	chr6_1:63270992-63271011	None:intergenic	15.0%
!!	TCATTGTCTTAAATTATTAA+TGG	+	chr6_1:63271141-63271160	Msa0890320:intron	15.0%
!!!	TTTTTACTTATAATAGTGAT+CGG	-	chr6_1:63271204-63271223	None:intergenic	15.0%
!!!	AATTTTGTCTAATCAACTAT+TGG	+	chr6_1:63271002-63271021	Msa0890320:intron	20.0%
!!!	TTTTGTCTAACTTTTATGTT+TGG	+	chr6_1:63271100-63271119	Msa0890320:intron	20.0%
!!!	AACTTTTATGTTTGGAATTA+TGG	+	chr6_1:63271108-63271127	Msa0890320:intron	20.0%
!!!	TTTAAGACAATGAATTAATG+CGG	-	chr6_1:63271134-63271153	None:intergenic	20.0%
!!	TCAAAAATCAATTACTTTCT+CGG	-	chr6_1:63271335-63271354	None:intergenic	20.0%
!!	TAATGATTAACAATGTAACT+TGG	-	chr6_1:63271537-63271556	None:intergenic	20.0%
!!!	TTTTTTAAATGAAGATGAAG+AGG	+	chr6_1:63271751-63271770	Msa0890320:three_prime_UTR	20.0%
!!!	AATTTTGTCTAATCAACTAT+TGG	+	chr6_1:63271002-63271021	Msa0890320:intron	20.0%
!!!	TTTTGTCTAACTTTTATGTT+TGG	+	chr6_1:63271100-63271119	Msa0890320:intron	20.0%
!!!	AACTTTTATGTTTGGAATTA+TGG	+	chr6_1:63271108-63271127	Msa0890320:intron	20.0%
!!!	TTTAAGACAATGAATTAATG+CGG	-	chr6_1:63271134-63271153	None:intergenic	20.0%
!!	TCAAAAATCAATTACTTTCT+CGG	-	chr6_1:63271335-63271354	None:intergenic	20.0%
!!	TAATGATTAACAATGTAACT+TGG	-	chr6_1:63271537-63271556	None:intergenic	20.0%
!!!	TTTTTTAAATGAAGATGAAG+AGG	+	chr6_1:63271751-63271770	Msa0890320:three_prime_UTR	20.0%
!	AACAGTTATTGGTACAAAAA+AGG	-	chr6_1:63270144-63270163	None:intergenic	25.0%
!	TGTACCAATAACTGTTTAAA+AGG	+	chr6_1:63270148-63270167	Msa0890320:five_prime_UTR	25.0%
!	GTACCAATAACTGTTTAAAA+GGG	+	chr6_1:63270149-63270168	Msa0890320:five_prime_UTR	25.0%
!!	TTACTAAAGTGTTCTTTGAA+AGG	-	chr6_1:63270176-63270195	None:intergenic	25.0%
!	TGTTTATGTCTTTGAATAGT+CGG	+	chr6_1:63270375-63270394	Msa0890320:intron	25.0%
!!!	CTAAAGGAACATTTTTTTTG+CGG	+	chr6_1:63270626-63270645	Msa0890320:intron	25.0%
!	GTGTGATATTTAAGAAATGA+GGG	-	chr6_1:63270712-63270731	None:intergenic	25.0%
!	AGTGTGATATTTAAGAAATG+AGG	-	chr6_1:63270713-63270732	None:intergenic	25.0%
!	TTTGTTAAAAAATGAAGGAC+AGG	+	chr6_1:63270814-63270833	Msa0890320:intron	25.0%
!!!	TTGATTTGTAAAACTGTTTC+AGG	+	chr6_1:63270863-63270882	Msa0890320:intron	25.0%
!!	TGATTTGTAAAACTGTTTCA+GGG	+	chr6_1:63270864-63270883	Msa0890320:intron	25.0%
!	GTTATTCAACGAATCTAAAA+AGG	-	chr6_1:63271230-63271249	None:intergenic	25.0%
!	CAAAAATCAATTACTTTCTC+GGG	-	chr6_1:63271334-63271353	None:intergenic	25.0%
!	AAAATGAAGCAAAATGAGTA+TGG	-	chr6_1:63271506-63271525	None:intergenic	25.0%
!!	AGTGTTTTGTGTTTGTTTAT+TGG	+	chr6_1:63271823-63271842	Msa0890320:three_prime_UTR	25.0%
!	AACAGTTATTGGTACAAAAA+AGG	-	chr6_1:63270144-63270163	None:intergenic	25.0%
!	TGTACCAATAACTGTTTAAA+AGG	+	chr6_1:63270148-63270167	Msa0890320:five_prime_UTR	25.0%
!	GTACCAATAACTGTTTAAAA+GGG	+	chr6_1:63270149-63270168	Msa0890320:five_prime_UTR	25.0%
!!	TTACTAAAGTGTTCTTTGAA+AGG	-	chr6_1:63270176-63270195	None:intergenic	25.0%
!	TGTTTATGTCTTTGAATAGT+CGG	+	chr6_1:63270375-63270394	Msa0890320:intron	25.0%
!!!	CTAAAGGAACATTTTTTTTG+CGG	+	chr6_1:63270626-63270645	Msa0890320:intron	25.0%
!	GTGTGATATTTAAGAAATGA+GGG	-	chr6_1:63270712-63270731	None:intergenic	25.0%
!	AGTGTGATATTTAAGAAATG+AGG	-	chr6_1:63270713-63270732	None:intergenic	25.0%
!	TTTGTTAAAAAATGAAGGAC+AGG	+	chr6_1:63270814-63270833	Msa0890320:intron	25.0%
!!!	TTGATTTGTAAAACTGTTTC+AGG	+	chr6_1:63270863-63270882	Msa0890320:intron	25.0%
!!	TGATTTGTAAAACTGTTTCA+GGG	+	chr6_1:63270864-63270883	Msa0890320:intron	25.0%
!	GTTATTCAACGAATCTAAAA+AGG	-	chr6_1:63271230-63271249	None:intergenic	25.0%
!	CAAAAATCAATTACTTTCTC+GGG	-	chr6_1:63271334-63271353	None:intergenic	25.0%
!	AAAATGAAGCAAAATGAGTA+TGG	-	chr6_1:63271506-63271525	None:intergenic	25.0%
!!	AGTGTTTTGTGTTTGTTTAT+TGG	+	chr6_1:63271823-63271842	Msa0890320:three_prime_UTR	25.0%
!	CAAAAAAGGTTGTTGTGTTT+TGG	-	chr6_1:63270130-63270149	None:intergenic	30.0%
	CATAAACATCATGAACCATA+GGG	-	chr6_1:63270363-63270382	None:intergenic	30.0%
	ACATAAACATCATGAACCAT+AGG	-	chr6_1:63270364-63270383	None:intergenic	30.0%
	GGGTATATTGTTGTAGAATA+TGG	+	chr6_1:63270431-63270450	Msa0890320:intron	30.0%
	ATTGTTGTAGAATATGGTTG+AGG	+	chr6_1:63270437-63270456	Msa0890320:intron	30.0%
	TACCAAATCTTGATTGTGAA+GGG	+	chr6_1:63270466-63270485	Msa0890320:CDS	30.0%
	AAAGCTCTCTTCAAACTTAA+AGG	+	chr6_1:63270507-63270526	Msa0890320:CDS	30.0%
!	TTGTACCCTTTAATTTCTTG+TGG	+	chr6_1:63270583-63270602	Msa0890320:intron	30.0%
	CATTGCCACAAGAAATTAAA+GGG	-	chr6_1:63270591-63270610	None:intergenic	30.0%
	TCATTGCCACAAGAAATTAA+AGG	-	chr6_1:63270592-63270611	None:intergenic	30.0%
	TAATTTCTTGTGGCAATGAA+TGG	+	chr6_1:63270593-63270612	Msa0890320:intron	30.0%
	CGCAAAAAAAATGTTCCTTT+AGG	-	chr6_1:63270628-63270647	None:intergenic	30.0%
!	AAATTGCTCCATGTGATTTT+GGG	-	chr6_1:63270683-63270702	None:intergenic	30.0%
!	AAAATTGCTCCATGTGATTT+TGG	-	chr6_1:63270684-63270703	None:intergenic	30.0%
	CTAGTAGACAATACAATATC+CGG	+	chr6_1:63270781-63270800	Msa0890320:intron	30.0%
	TAGTAGACAATACAATATCC+GGG	+	chr6_1:63270782-63270801	Msa0890320:intron	30.0%
	TTTAACAAATCAAACACACC+CGG	-	chr6_1:63270803-63270822	None:intergenic	30.0%
!	CAGTTTTACAAATCAAACAC+TGG	-	chr6_1:63270859-63270878	None:intergenic	30.0%
!!	TTTTTGATTGCCTGATTTAC+AGG	+	chr6_1:63271348-63271367	Msa0890320:intron	30.0%
	AGATGATGTAGAAGTTGAAA+TGG	+	chr6_1:63271374-63271393	Msa0890320:CDS	30.0%
	TACAAAAGTGAAGCAACAAA+TGG	+	chr6_1:63271570-63271589	Msa0890320:CDS	30.0%
!	CAAAAAAGGTTGTTGTGTTT+TGG	-	chr6_1:63270130-63270149	None:intergenic	30.0%
	CATAAACATCATGAACCATA+GGG	-	chr6_1:63270363-63270382	None:intergenic	30.0%
	ACATAAACATCATGAACCAT+AGG	-	chr6_1:63270364-63270383	None:intergenic	30.0%
	GGGTATATTGTTGTAGAATA+TGG	+	chr6_1:63270431-63270450	Msa0890320:intron	30.0%
	ATTGTTGTAGAATATGGTTG+AGG	+	chr6_1:63270437-63270456	Msa0890320:intron	30.0%
	TACCAAATCTTGATTGTGAA+GGG	+	chr6_1:63270466-63270485	Msa0890320:CDS	30.0%
	AAAGCTCTCTTCAAACTTAA+AGG	+	chr6_1:63270507-63270526	Msa0890320:CDS	30.0%
!	TTGTACCCTTTAATTTCTTG+TGG	+	chr6_1:63270583-63270602	Msa0890320:intron	30.0%
	CATTGCCACAAGAAATTAAA+GGG	-	chr6_1:63270591-63270610	None:intergenic	30.0%
	TCATTGCCACAAGAAATTAA+AGG	-	chr6_1:63270592-63270611	None:intergenic	30.0%
	TAATTTCTTGTGGCAATGAA+TGG	+	chr6_1:63270593-63270612	Msa0890320:intron	30.0%
	CGCAAAAAAAATGTTCCTTT+AGG	-	chr6_1:63270628-63270647	None:intergenic	30.0%
!	AAATTGCTCCATGTGATTTT+GGG	-	chr6_1:63270683-63270702	None:intergenic	30.0%
!	AAAATTGCTCCATGTGATTT+TGG	-	chr6_1:63270684-63270703	None:intergenic	30.0%
	CTAGTAGACAATACAATATC+CGG	+	chr6_1:63270781-63270800	Msa0890320:intron	30.0%
	TAGTAGACAATACAATATCC+GGG	+	chr6_1:63270782-63270801	Msa0890320:intron	30.0%
	TTTAACAAATCAAACACACC+CGG	-	chr6_1:63270803-63270822	None:intergenic	30.0%
!	CAGTTTTACAAATCAAACAC+TGG	-	chr6_1:63270859-63270878	None:intergenic	30.0%
!!	TTTTTGATTGCCTGATTTAC+AGG	+	chr6_1:63271348-63271367	Msa0890320:intron	30.0%
	AGATGATGTAGAAGTTGAAA+TGG	+	chr6_1:63271374-63271393	Msa0890320:CDS	30.0%
	TACAAAAGTGAAGCAACAAA+TGG	+	chr6_1:63271570-63271589	Msa0890320:CDS	30.0%
!	AAGGAGTATGCCTCAAATAT+GGG	+	chr6_1:63270059-63270078	Msa0890320:five_prime_UTR	35.0%
!	GGTCCCTTTTAAACAGTTAT+TGG	-	chr6_1:63270155-63270174	None:intergenic	35.0%
	TGAACCATAGGGAAAATAGA+GGG	-	chr6_1:63270352-63270371	None:intergenic	35.0%
	ATGAACCATAGGGAAAATAG+AGG	-	chr6_1:63270353-63270372	None:intergenic	35.0%
	TGACTAATGTTGGTGTAATG+TGG	+	chr6_1:63270409-63270428	Msa0890320:intron	35.0%
	GACTAATGTTGGTGTAATGT+GGG	+	chr6_1:63270410-63270429	Msa0890320:intron	35.0%
	ACTAATGTTGGTGTAATGTG+GGG	+	chr6_1:63270411-63270430	Msa0890320:intron	35.0%
	GTACCAAATCTTGATTGTGA+AGG	+	chr6_1:63270465-63270484	Msa0890320:CDS	35.0%
	CTTTGATTCCCAAAATCACA+TGG	+	chr6_1:63270672-63270691	Msa0890320:intron	35.0%
	CAAAAAGTTGTGATGTGGTT+TGG	-	chr6_1:63270944-63270963	None:intergenic	35.0%
!!	GTTTTAGACAACTTGTACGT+GGG	-	chr6_1:63270968-63270987	None:intergenic	35.0%
!!	TGTTTTAGACAACTTGTACG+TGG	-	chr6_1:63270969-63270988	None:intergenic	35.0%
	ATCATCTACTCCTGTAAATC+AGG	-	chr6_1:63271361-63271380	None:intergenic	35.0%
	TGATGTAGAAGTTGAAATGG+AGG	+	chr6_1:63271377-63271396	Msa0890320:CDS	35.0%
	AGCAACTGAATAAACAGAAG+GGG	-	chr6_1:63271616-63271635	None:intergenic	35.0%
	CAGCAACTGAATAAACAGAA+GGG	-	chr6_1:63271617-63271636	None:intergenic	35.0%
	ACAGCAACTGAATAAACAGA+AGG	-	chr6_1:63271618-63271637	None:intergenic	35.0%
	ACATTATAGTGCAAGCATGA+GGG	-	chr6_1:63271683-63271702	None:intergenic	35.0%
	TACATTATAGTGCAAGCATG+AGG	-	chr6_1:63271684-63271703	None:intergenic	35.0%
	CTTGCACTATAATGTAAGCT+AGG	+	chr6_1:63271688-63271707	Msa0890320:exon	35.0%
!	AAGGAGTATGCCTCAAATAT+GGG	+	chr6_1:63270059-63270078	Msa0890320:five_prime_UTR	35.0%
!	GGTCCCTTTTAAACAGTTAT+TGG	-	chr6_1:63270155-63270174	None:intergenic	35.0%
	TGAACCATAGGGAAAATAGA+GGG	-	chr6_1:63270352-63270371	None:intergenic	35.0%
	ATGAACCATAGGGAAAATAG+AGG	-	chr6_1:63270353-63270372	None:intergenic	35.0%
	TGACTAATGTTGGTGTAATG+TGG	+	chr6_1:63270409-63270428	Msa0890320:intron	35.0%
	GACTAATGTTGGTGTAATGT+GGG	+	chr6_1:63270410-63270429	Msa0890320:intron	35.0%
	ACTAATGTTGGTGTAATGTG+GGG	+	chr6_1:63270411-63270430	Msa0890320:intron	35.0%
	GTACCAAATCTTGATTGTGA+AGG	+	chr6_1:63270465-63270484	Msa0890320:CDS	35.0%
	CTTTGATTCCCAAAATCACA+TGG	+	chr6_1:63270672-63270691	Msa0890320:intron	35.0%
	CAAAAAGTTGTGATGTGGTT+TGG	-	chr6_1:63270944-63270963	None:intergenic	35.0%
!!	GTTTTAGACAACTTGTACGT+GGG	-	chr6_1:63270968-63270987	None:intergenic	35.0%
!!	TGTTTTAGACAACTTGTACG+TGG	-	chr6_1:63270969-63270988	None:intergenic	35.0%
	ATCATCTACTCCTGTAAATC+AGG	-	chr6_1:63271361-63271380	None:intergenic	35.0%
	TGATGTAGAAGTTGAAATGG+AGG	+	chr6_1:63271377-63271396	Msa0890320:CDS	35.0%
	AGCAACTGAATAAACAGAAG+GGG	-	chr6_1:63271616-63271635	None:intergenic	35.0%
	CAGCAACTGAATAAACAGAA+GGG	-	chr6_1:63271617-63271636	None:intergenic	35.0%
	ACAGCAACTGAATAAACAGA+AGG	-	chr6_1:63271618-63271637	None:intergenic	35.0%
	ACATTATAGTGCAAGCATGA+GGG	-	chr6_1:63271683-63271702	None:intergenic	35.0%
	TACATTATAGTGCAAGCATG+AGG	-	chr6_1:63271684-63271703	None:intergenic	35.0%
	CTTGCACTATAATGTAAGCT+AGG	+	chr6_1:63271688-63271707	Msa0890320:exon	35.0%
	CATAATGAGAGACAAGGTGA+AGG	+	chr6_1:63270040-63270059	Msa0890320:five_prime_UTR	40.0%
!	GAAGGAGTATGCCTCAAATA+TGG	+	chr6_1:63270058-63270077	Msa0890320:five_prime_UTR	40.0%
!	AGGAGTATGCCTCAAATATG+GGG	+	chr6_1:63270060-63270079	Msa0890320:five_prime_UTR	40.0%
!!	GAACAAAGTGTCGTTGTTGT+TGG	-	chr6_1:63270199-63270218	None:intergenic	40.0%
	AAGAGAGTTGTGTTCTGTTG+TGG	-	chr6_1:63270242-63270261	None:intergenic	40.0%
!	TACTCCCTCTATTTTCCCTA+TGG	+	chr6_1:63270345-63270364	Msa0890320:intron	40.0%
	CACCCTTCACAATCAAGATT+TGG	-	chr6_1:63270471-63270490	None:intergenic	40.0%
	TTTCTTGTGGCAATGAATGG+TGG	+	chr6_1:63270596-63270615	Msa0890320:intron	40.0%
	ACAAACTGGAGGATTATGAC+AGG	+	chr6_1:63270892-63270911	Msa0890320:intron	40.0%
	TGGGACAAAAAGTTGTGATG+TGG	-	chr6_1:63270949-63270968	None:intergenic	40.0%
	GCACAAAAGATAACAGTCAG+AGG	+	chr6_1:63271399-63271418	Msa0890320:CDS	40.0%
	AAGATAACAGTCAGAGGCTA+TGG	+	chr6_1:63271405-63271424	Msa0890320:CDS	40.0%
	TTGAAAGCAATCAAACGTGC+AGG	+	chr6_1:63271447-63271466	Msa0890320:CDS	40.0%
	TGAAAGCAATCAAACGTGCA+GGG	+	chr6_1:63271448-63271467	Msa0890320:CDS	40.0%
	AAGAGGTGAAAGTTTGAGTG+AGG	+	chr6_1:63271768-63271787	Msa0890320:three_prime_UTR	40.0%
	CATAATGAGAGACAAGGTGA+AGG	+	chr6_1:63270040-63270059	Msa0890320:five_prime_UTR	40.0%
!	GAAGGAGTATGCCTCAAATA+TGG	+	chr6_1:63270058-63270077	Msa0890320:five_prime_UTR	40.0%
!	AGGAGTATGCCTCAAATATG+GGG	+	chr6_1:63270060-63270079	Msa0890320:five_prime_UTR	40.0%
!!	GAACAAAGTGTCGTTGTTGT+TGG	-	chr6_1:63270199-63270218	None:intergenic	40.0%
	AAGAGAGTTGTGTTCTGTTG+TGG	-	chr6_1:63270242-63270261	None:intergenic	40.0%
!	TACTCCCTCTATTTTCCCTA+TGG	+	chr6_1:63270345-63270364	Msa0890320:intron	40.0%
	CACCCTTCACAATCAAGATT+TGG	-	chr6_1:63270471-63270490	None:intergenic	40.0%
	TTTCTTGTGGCAATGAATGG+TGG	+	chr6_1:63270596-63270615	Msa0890320:intron	40.0%
	ACAAACTGGAGGATTATGAC+AGG	+	chr6_1:63270892-63270911	Msa0890320:intron	40.0%
	TGGGACAAAAAGTTGTGATG+TGG	-	chr6_1:63270949-63270968	None:intergenic	40.0%
	GCACAAAAGATAACAGTCAG+AGG	+	chr6_1:63271399-63271418	Msa0890320:CDS	40.0%
	AAGATAACAGTCAGAGGCTA+TGG	+	chr6_1:63271405-63271424	Msa0890320:CDS	40.0%
	TTGAAAGCAATCAAACGTGC+AGG	+	chr6_1:63271447-63271466	Msa0890320:CDS	40.0%
	TGAAAGCAATCAAACGTGCA+GGG	+	chr6_1:63271448-63271467	Msa0890320:CDS	40.0%
	AAGAGGTGAAAGTTTGAGTG+AGG	+	chr6_1:63271768-63271787	Msa0890320:three_prime_UTR	40.0%
	GGAGTATGCCTCAAATATGG+GGG	+	chr6_1:63270061-63270080	Msa0890320:five_prime_UTR	45.0%
!	TATGGGGGAGCGCAATAAAA+AGG	+	chr6_1:63270076-63270095	Msa0890320:five_prime_UTR	45.0%
!	GCGCAATAAAAAGGCATGCT+TGG	+	chr6_1:63270085-63270104	Msa0890320:five_prime_UTR	45.0%
	TTGTGGTGTGGTCACTGTTT+GGG	-	chr6_1:63270225-63270244	None:intergenic	45.0%
	AGTTGTGTTCTGTTGTGGTG+TGG	-	chr6_1:63270237-63270256	None:intergenic	45.0%
	GTTTCAGGGACAGAACAAAC+TGG	+	chr6_1:63270878-63270897	Msa0890320:intron	45.0%
!!	GTTGTGATGTGGTTTGGTGA+GGG	-	chr6_1:63270938-63270957	None:intergenic	45.0%
!!	AGTTGTGATGTGGTTTGGTG+AGG	-	chr6_1:63270939-63270958	None:intergenic	45.0%
	GAAGCAAAATGAGTATGGCC+CGG	-	chr6_1:63271501-63271520	None:intergenic	45.0%
!	AGTTGCTGTTGCATCTGATG+AGG	+	chr6_1:63271629-63271648	Msa0890320:CDS	45.0%
!	AGGCATGTTTTCGCACTTCT+AGG	+	chr6_1:63271788-63271807	Msa0890320:three_prime_UTR	45.0%
!	GGCATGTTTTCGCACTTCTA+GGG	+	chr6_1:63271789-63271808	Msa0890320:three_prime_UTR	45.0%
	GGAGTATGCCTCAAATATGG+GGG	+	chr6_1:63270061-63270080	Msa0890320:five_prime_UTR	45.0%
!	TATGGGGGAGCGCAATAAAA+AGG	+	chr6_1:63270076-63270095	Msa0890320:five_prime_UTR	45.0%
!	GCGCAATAAAAAGGCATGCT+TGG	+	chr6_1:63270085-63270104	Msa0890320:five_prime_UTR	45.0%
	TTGTGGTGTGGTCACTGTTT+GGG	-	chr6_1:63270225-63270244	None:intergenic	45.0%
	AGTTGTGTTCTGTTGTGGTG+TGG	-	chr6_1:63270237-63270256	None:intergenic	45.0%
	GTTTCAGGGACAGAACAAAC+TGG	+	chr6_1:63270878-63270897	Msa0890320:intron	45.0%
!!	GTTGTGATGTGGTTTGGTGA+GGG	-	chr6_1:63270938-63270957	None:intergenic	45.0%
!!	AGTTGTGATGTGGTTTGGTG+AGG	-	chr6_1:63270939-63270958	None:intergenic	45.0%
	GAAGCAAAATGAGTATGGCC+CGG	-	chr6_1:63271501-63271520	None:intergenic	45.0%
!	AGTTGCTGTTGCATCTGATG+AGG	+	chr6_1:63271629-63271648	Msa0890320:CDS	45.0%
!	AGGCATGTTTTCGCACTTCT+AGG	+	chr6_1:63271788-63271807	Msa0890320:three_prime_UTR	45.0%
!	GGCATGTTTTCGCACTTCTA+GGG	+	chr6_1:63271789-63271808	Msa0890320:three_prime_UTR	45.0%
	ATTGCGCTCCCCCATATTTG+AGG	-	chr6_1:63270072-63270091	None:intergenic	50.0%
	GTTGTGGTGTGGTCACTGTT+TGG	-	chr6_1:63270226-63270245	None:intergenic	50.0%
!!	GTGGCAATGAATGGTGGACA+TGG	+	chr6_1:63270602-63270621	Msa0890320:intron	50.0%
!!	GAATGGTGGACATGGCCTAA+AGG	+	chr6_1:63270610-63270629	Msa0890320:intron	50.0%
	TCAGGGACAGAACAAACTGG+AGG	+	chr6_1:63270881-63270900	Msa0890320:intron	50.0%
	AGAGCCATGGCCATTTCTAC+CGG	+	chr6_1:63271479-63271498	Msa0890320:CDS	50.0%
	TGAGTATGGCCCGGTAGAAA+TGG	-	chr6_1:63271492-63271511	None:intergenic	50.0%
	ATTGCGCTCCCCCATATTTG+AGG	-	chr6_1:63270072-63270091	None:intergenic	50.0%
	GTTGTGGTGTGGTCACTGTT+TGG	-	chr6_1:63270226-63270245	None:intergenic	50.0%
!!	GTGGCAATGAATGGTGGACA+TGG	+	chr6_1:63270602-63270621	Msa0890320:intron	50.0%
!!	GAATGGTGGACATGGCCTAA+AGG	+	chr6_1:63270610-63270629	Msa0890320:intron	50.0%
	TCAGGGACAGAACAAACTGG+AGG	+	chr6_1:63270881-63270900	Msa0890320:intron	50.0%
	AGAGCCATGGCCATTTCTAC+CGG	+	chr6_1:63271479-63271498	Msa0890320:CDS	50.0%
	TGAGTATGGCCCGGTAGAAA+TGG	-	chr6_1:63271492-63271511	None:intergenic	50.0%
	GAGCCATGGCCATTTCTACC+GGG	+	chr6_1:63271480-63271499	Msa0890320:CDS	55.0%
	GAGCCATGGCCATTTCTACC+GGG	+	chr6_1:63271480-63271499	Msa0890320:CDS	55.0%
	CAGGGAAAGCAGCAGAGCCA+TGG	+	chr6_1:63271466-63271485	Msa0890320:CDS	60.0%
	TGGCCCGGTAGAAATGGCCA+TGG	-	chr6_1:63271486-63271505	None:intergenic	60.0%
	CAGGGAAAGCAGCAGAGCCA+TGG	+	chr6_1:63271466-63271485	Msa0890320:CDS	60.0%
	TGGCCCGGTAGAAATGGCCA+TGG	-	chr6_1:63271486-63271505	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	63270036	63271850	63270036	ID=Msa0890320;Name=Msa0890320
chr6_1	mRNA	63270036	63271850	63270036	ID=Msa0890320-mRNA-1;Parent=Msa0890320;Name=Msa0890320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=294\|1\|1\|1\|1\|1\|3\|146\|140
chr6_1	exon	63270036	63270335	63270036	ID=Msa0890320-mRNA-1:exon:11517;Parent=Msa0890320-mRNA-1
chr6_1	exon	63270447	63270528	63270447	ID=Msa0890320-mRNA-1:exon:11518;Parent=Msa0890320-mRNA-1
chr6_1	exon	63271370	63271850	63271370	ID=Msa0890320-mRNA-1:exon:11519;Parent=Msa0890320-mRNA-1
chr6_1	five_prime_UTR	63270036	63270329	63270036	ID=Msa0890320-mRNA-1:five_prime_utr;Parent=Msa0890320-mRNA-1
chr6_1	CDS	63270330	63270335	63270330	ID=Msa0890320-mRNA-1:cds;Parent=Msa0890320-mRNA-1
chr6_1	CDS	63270447	63270528	63270447	ID=Msa0890320-mRNA-1:cds;Parent=Msa0890320-mRNA-1
chr6_1	CDS	63271370	63271704	63271370	ID=Msa0890320-mRNA-1:cds;Parent=Msa0890320-mRNA-1
chr6_1	three_prime_UTR	63271705	63271850	63271705	ID=Msa0890320-mRNA-1:three_prime_utr;Parent=Msa0890320-mRNA-1

Gene Sequence

>Msa0890320

ATGTCTAATATGGTTGAGGTTAGAGTACCAAATCTTGATTGTGAAGGGTGTGCTTCAAAACTAAAGAAAGCTCTCTTCAAACTTAAAGGAGTAGATGATGTAGAAGTTGAAATGGAGGCACAAAAGATAACAGTCAGAGGCTATGGTTTAGAAGAAAAAAAAGTATTGAAAGCAATCAAACGTGCAGGGAAAGCAGCAGAGCCATGGCCATTTCTACCGGGCCATACTCATTTTGCTTCATTTTACAAGTATCCAAGTTACATTGTTAATCATTATTATAATGATGCATACAAAAGTGAAGCAACAAATGGAGTTCATACTTTTTTTCATACCCCTTCTGTTTATTCAGTTGCTGTTGCATCTGATGAGGCTTTTGCTTCAATGTTTAGTGATGATAACCCTCATGCTTGCACTATAATGTAA

Protein sequence

>Msa0890320

MSNMVEVRVPNLDCEGCASKLKKALFKLKGVDDVEVEMEAQKITVRGYGLEEKKVLKAIKRAGKAAEPWPFLPGHTHFASFYKYPSYIVNHYYNDAYKSEATNGVHTFFHTPSVYSVAVASDEAFASMFSDDNPHACTIM*