Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964350 | XP_024642012.1 | 99.057 | 106 | 1 | 0 | 1 | 106 | 1 | 106 | 9.99e-72 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964350 | sp|Q94C12|NDBAB_ARATH | 78.302 | 106 | 23 | 0 | 1 | 106 | 1 | 106 | 5.00e-59 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964350 | I3S9E3 | 99.057 | 106 | 1 | 0 | 1 | 106 | 1 | 106 | 4.77e-72 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076040 | Msa0964350 | 0.809360 | 1.966956e-50 | -8.615850e-47 |
| Msa0082280 | Msa0964350 | 0.810244 | 1.269335e-50 | -8.615850e-47 |
| Msa0659030 | Msa0964350 | 0.832773 | 7.806351e-56 | -8.615850e-47 |
| Msa0705000 | Msa0964350 | 0.831572 | 1.547506e-55 | -8.615850e-47 |
| Msa0705040 | Msa0964350 | 0.841065 | 5.954686e-58 | -8.615850e-47 |
| Msa0174770 | Msa0964350 | 0.819657 | 1.035118e-52 | -8.615850e-47 |
| Msa0181610 | Msa0964350 | 0.823930 | 1.062256e-53 | -8.615850e-47 |
| Msa0402330 | Msa0964350 | 0.801395 | 9.188548e-49 | -8.615850e-47 |
| Msa0568470 | Msa0964350 | 0.814094 | 1.835145e-51 | -8.615850e-47 |
| Msa0581070 | Msa0964350 | 0.811030 | 8.583096e-51 | -8.615850e-47 |
| Msa0964350 | Msa1126510 | 0.809923 | 1.488082e-50 | -8.615850e-47 |
| Msa0964350 | Msa1126770 | 0.809091 | 2.246271e-50 | -8.615850e-47 |
| Msa0964350 | Msa1166860 | 0.803193 | 3.918249e-49 | -8.615850e-47 |
| Msa0964350 | Msa1184370 | 0.827455 | 1.549579e-54 | -8.615850e-47 |
| Msa0964350 | Msa1227690 | 0.818695 | 1.714080e-52 | -8.615850e-47 |
| Msa0964350 | Msa1370860 | 0.813772 | 2.161488e-51 | -8.615850e-47 |
| Msa0964350 | Msa1442850 | 0.830300 | 3.173180e-55 | -8.615850e-47 |
| Msa0964350 | Msa1465080 | 0.811124 | 8.188944e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964350 | MtrunA17_Chr6g0484541 | 99.057 | 106 | 1 | 0 | 1 | 106 | 1 | 106 | 9.19e-76 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964350 | AT3G18410.1 | 78.302 | 106 | 23 | 0 | 1 | 106 | 1 | 106 | 5.08e-60 | 179 |
| Msa0964350 | AT3G18410.2 | 78.302 | 106 | 23 | 0 | 1 | 106 | 1 | 106 | 5.08e-60 | 179 |
| Msa0964350 | AT1G49140.1 | 75.962 | 104 | 25 | 0 | 1 | 104 | 1 | 104 | 7.49e-57 | 171 |
| Msa0964350 | AT1G49140.2 | 75.962 | 104 | 25 | 0 | 1 | 104 | 1 | 104 | 7.49e-57 | 171 |
Find 42 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTCAACTGCCTCAACTTT+TGG | 0.240924 | 6_3:-90774779 | None:intergenic |
| AAAAGCTTCGTTGGTGTTAT+AGG | 0.264593 | 6_3:+90771714 | Msa0964350:CDS |
| CCTCCACCTACAATCTGATT+AGG | 0.273689 | 6_3:-90776265 | None:intergenic |
| GGTCGTCACCCTTCTCTTCA+TGG | 0.286257 | 6_3:+90771824 | Msa0964350:CDS |
| TTTCCCCGTGGATAAATAAA+AGG | 0.316740 | 6_3:+90774809 | Msa0964350:three_prime_UTR |
| TTGCTTTGCCTTGGCTTACA+AGG | 0.351482 | 6_3:+90776359 | Msa0964350:three_prime_UTR |
| TATCACCCTAATCAGATTGT+AGG | 0.378789 | 6_3:+90776259 | Msa0964350:three_prime_UTR |
| CTCCACCTACAATCTGATTA+GGG | 0.395090 | 6_3:-90776264 | None:intergenic |
| AGTCTACAAGAGGGATTGGT+TGG | 0.425193 | 6_3:+90771792 | Msa0964350:CDS |
| GTCTACAAGAGGGATTGGTT+GGG | 0.428793 | 6_3:+90771793 | Msa0964350:CDS |
| CGTTGGTGTTATAGGATTGA+AGG | 0.432641 | 6_3:+90771722 | Msa0964350:CDS |
| TTATCCACGGGGAAATCATT+CGG | 0.443943 | 6_3:-90774801 | None:intergenic |
| CTCATTTCAAGCATCGCCAC+TGG | 0.450051 | 6_3:-90771635 | None:intergenic |
| ATCGCCACTGGATCTTTGTA+TGG | 0.463916 | 6_3:-90771623 | None:intergenic |
| CTTGAGTCTACAAGAGGGAT+TGG | 0.465339 | 6_3:+90771788 | Msa0964350:CDS |
| GGGAAGGAAGAAGGGGTATG+TGG | 0.484400 | 6_3:+90771559 | Msa0964350:CDS |
| TCTACAAGAGGGATTGGTTG+GGG | 0.493170 | 6_3:+90771794 | Msa0964350:CDS |
| AAACACAACAGCTTGAACAT+AGG | 0.507005 | 6_3:-90776292 | None:intergenic |
| TTCGCCGGATCGAAATCATC+TGG | 0.511283 | 6_3:-90771599 | None:intergenic |
| AAAATACAGTTGTAGTTCAC+AGG | 0.518418 | 6_3:-90776338 | None:intergenic |
| GGATCTTTGTATGGATTCGC+CGG | 0.537785 | 6_3:-90771614 | None:intergenic |
| CAGTGGCGATGCTTGAAATG+AGG | 0.540040 | 6_3:+90771636 | Msa0964350:CDS |
| GTTGGTGTTATAGGATTGAA+GGG | 0.554470 | 6_3:+90771723 | Msa0964350:CDS |
| AAACACAAACCATGAAGAGA+AGG | 0.554780 | 6_3:-90771833 | None:intergenic |
| AGTGGCGATGCTTGAAATGA+GGG | 0.559643 | 6_3:+90771637 | Msa0964350:CDS |
| TTATTCGTGAAAAGCTTCGT+TGG | 0.561335 | 6_3:+90771705 | Msa0964350:CDS |
| CACCCTAATCAGATTGTAGG+TGG | 0.573862 | 6_3:+90776262 | Msa0964350:three_prime_UTR |
| CCCACCAGATGATTTCGATC+CGG | 0.583849 | 6_3:+90771595 | Msa0964350:CDS |
| CCTAATCAGATTGTAGGTGG+AGG | 0.587143 | 6_3:+90776265 | Msa0964350:three_prime_UTR |
| GCCGGATCGAAATCATCTGG+TGG | 0.604138 | 6_3:-90771596 | None:intergenic |
| CAGTATCTTGAGTCTACAAG+AGG | 0.608923 | 6_3:+90771782 | Msa0964350:CDS |
| CCGGATCGAAATCATCTGGT+GGG | 0.615720 | 6_3:-90771595 | None:intergenic |
| AATAAAAGCCTTGTAAGCCA+AGG | 0.619008 | 6_3:-90776367 | None:intergenic |
| CTACAAGAGGGATTGGTTGG+GGG | 0.631686 | 6_3:+90771795 | Msa0964350:CDS |
| AACACAAACCATGAAGAGAA+GGG | 0.648401 | 6_3:-90771832 | None:intergenic |
| TGAACCAGGACCAAAAGTTG+AGG | 0.649485 | 6_3:+90774769 | Msa0964350:intron |
| AAACATAAACACAAACACAA+AGG | 0.672622 | 6_3:+90771478 | Msa0964350:five_prime_UTR |
| AGTTCACAGGAAATTGACCA+AGG | 0.678824 | 6_3:-90776325 | None:intergenic |
| AGTATCTTGAGTCTACAAGA+GGG | 0.684407 | 6_3:+90771783 | Msa0964350:CDS |
| AAGCACACATCATAATAACA+AGG | 0.687576 | 6_3:-90776476 | None:intergenic |
| GAATCCATACAAAGATCCAG+TGG | 0.700973 | 6_3:+90771619 | Msa0964350:CDS |
| GAGTCCGAATGATTTCCCCG+TGG | 0.780966 | 6_3:+90774797 | Msa0964350:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTAAAATTGTTTAATT+CGG | + | chr6_3:90773687-90773706 | Msa0964350:intron | 10.0% |
| !! | AAGTAAATTAAAATAAACTA+TGG | + | chr6_3:90775133-90775152 | Msa0964350:intron | 10.0% |
| !!! | TGGATTTTTTTTTGTTTAAT+TGG | + | chr6_3:90771877-90771896 | Msa0964350:intron | 15.0% |
| !!! | TTTCATGTTTTTGTTAATTA+AGG | + | chr6_3:90772211-90772230 | Msa0964350:intron | 15.0% |
| !!! | TTCATGTTTTTGTTAATTAA+GGG | + | chr6_3:90772212-90772231 | Msa0964350:intron | 15.0% |
| !!! | TTTTGTTTTTTTTTTTGTTG+TGG | + | chr6_3:90772765-90772784 | Msa0964350:intron | 15.0% |
| !!! | AGTTGTCATTTTTATTATAA+AGG | + | chr6_3:90773514-90773533 | Msa0964350:intron | 15.0% |
| !!! | AACAATTTTAAAATGAAAAG+TGG | - | chr6_3:90773682-90773701 | None:intergenic | 15.0% |
| !!! | ATCAACTTTAATTTCAATTA+TGG | + | chr6_3:90773860-90773879 | Msa0964350:intron | 15.0% |
| !!! | TGATTTTTTCAAATTATTAC+CGG | + | chr6_3:90774136-90774155 | Msa0964350:intron | 15.0% |
| !!! | TTTTATTGCTATTGATATTT+GGG | + | chr6_3:90774520-90774539 | Msa0964350:intron | 15.0% |
| !! | TGTTAAAAAAAAAGAAAAAG+AGG | + | chr6_3:90775274-90775293 | Msa0964350:intron | 15.0% |
| !!! | GGATATATTTTATATATATC+TGG | + | chr6_3:90775438-90775457 | Msa0964350:intron | 15.0% |
| !!! | ATCAGTTATTTTAAAAGTTT+TGG | + | chr6_3:90776068-90776087 | Msa0964350:intron | 15.0% |
| !!! | TTTGTTGTGTAATTATGAAA+TGG | + | chr6_3:90771902-90771921 | Msa0964350:intron | 20.0% |
| !! | TTGTTGTGTAATTATGAAAT+GGG | + | chr6_3:90771903-90771922 | Msa0964350:intron | 20.0% |
| !!! | TTTGATGTATTTGTTGATTA+AGG | + | chr6_3:90771972-90771991 | Msa0964350:intron | 20.0% |
| !!! | TTGATGTATTTGTTGATTAA+GGG | + | chr6_3:90771973-90771992 | Msa0964350:intron | 20.0% |
| !! | TTATAGACATAGAAATTGTT+TGG | + | chr6_3:90772058-90772077 | Msa0964350:intron | 20.0% |
| !!! | TGATCTCTCTTTTATTTTTT+TGG | + | chr6_3:90772726-90772745 | Msa0964350:intron | 20.0% |
| !!! | GATCTCTCTTTTATTTTTTT+GGG | + | chr6_3:90772727-90772746 | Msa0964350:intron | 20.0% |
| !!! | ATCTCTCTTTTATTTTTTTG+GGG | + | chr6_3:90772728-90772747 | Msa0964350:intron | 20.0% |
| !! | TCAAATAAACCAATTCAAAT+CGG | - | chr6_3:90772942-90772961 | None:intergenic | 20.0% |
| !! | CAATAGCTTATAATGAATAA+GGG | + | chr6_3:90773362-90773381 | Msa0964350:intron | 20.0% |
| !! | AATAGCTTATAATGAATAAG+GGG | + | chr6_3:90773363-90773382 | Msa0964350:intron | 20.0% |
| !!! | CTTATTTTGTAAACTTGATT+CGG | + | chr6_3:90773766-90773785 | Msa0964350:intron | 20.0% |
| !! | TAATTTCAATTATGGAGTAA+CGG | + | chr6_3:90773868-90773887 | Msa0964350:intron | 20.0% |
| !!! | TATCTTATTGTGATGTTTTA+AGG | + | chr6_3:90774358-90774377 | Msa0964350:intron | 20.0% |
| !!! | CTTTTATTGCTATTGATATT+TGG | + | chr6_3:90774519-90774538 | Msa0964350:intron | 20.0% |
| !! | AAACAAAACTCAAACTATAA+TGG | - | chr6_3:90774641-90774660 | None:intergenic | 20.0% |
| !!! | TAGTTTGAGTTTTGTTTTTT+CGG | + | chr6_3:90774644-90774663 | Msa0964350:intron | 20.0% |
| !! | ATGGCTATAAAAATCAAATT+AGG | - | chr6_3:90775051-90775070 | None:intergenic | 20.0% |
| !! | AAATCTAGAAATGAGTTTAA+TGG | - | chr6_3:90775070-90775089 | None:intergenic | 20.0% |
| !!! | TAAACTCATTTCTAGATTTA+AGG | + | chr6_3:90775071-90775090 | Msa0964350:intron | 20.0% |
| !!! | AAACTCATTTCTAGATTTAA+GGG | + | chr6_3:90775072-90775091 | Msa0964350:intron | 20.0% |
| !!! | GTTTATTTTAATTTACTTCC+AGG | - | chr6_3:90775131-90775150 | None:intergenic | 20.0% |
| !! | AATTAAAATAAACTATGGTG+CGG | + | chr6_3:90775138-90775157 | Msa0964350:intron | 20.0% |
| !! | AGAAAAAAATTGCAGAAAAT+AGG | + | chr6_3:90775207-90775226 | Msa0964350:intron | 20.0% |
| !! | AAAAAAAAAGAAAAAGAGGA+AGG | + | chr6_3:90775278-90775297 | Msa0964350:intron | 20.0% |
| !!! | TTGAATCTTTTAGATACATT+GGG | - | chr6_3:90775519-90775538 | None:intergenic | 20.0% |
| !!! | TTTGAATCTTTTAGATACAT+TGG | - | chr6_3:90775520-90775539 | None:intergenic | 20.0% |
| !! | TTTGATGTAAAATATTCTCT+AGG | - | chr6_3:90775897-90775916 | None:intergenic | 20.0% |
| !!! | AATATGCTTAAATGTAGTTT+TGG | - | chr6_3:90776155-90776174 | None:intergenic | 20.0% |
| !!! | TTTGTGTGTAGAGTTTTATT+GGG | - | chr6_3:90771461-90771480 | None:intergenic | 25.0% |
| ! | AAACATAAACACAAACACAA+AGG | + | chr6_3:90771478-90771497 | Msa0964350:five_prime_UTR | 25.0% |
| !!! | TGATTTTTGTGTAGTATTGA+AGG | + | chr6_3:90771948-90771967 | Msa0964350:intron | 25.0% |
| !!! | GATTTTTGTGTAGTATTGAA+GGG | + | chr6_3:90771949-90771968 | Msa0964350:intron | 25.0% |
| ! | TATTAAGCATTTGTAGTGTA+AGG | + | chr6_3:90772088-90772107 | Msa0964350:intron | 25.0% |
| ! | ATTAAGCATTTGTAGTGTAA+GGG | + | chr6_3:90772089-90772108 | Msa0964350:intron | 25.0% |
| !!! | TTTTGTTGTGAATTGTCAAA+TGG | + | chr6_3:90772139-90772158 | Msa0964350:intron | 25.0% |
| !! | TTTGTTGTGAATTGTCAAAT+GGG | + | chr6_3:90772140-90772159 | Msa0964350:intron | 25.0% |
| !! | GTTGAGATTTTTATGTAGTA+TGG | + | chr6_3:90772183-90772202 | Msa0964350:intron | 25.0% |
| !! | AGATTTTTATGTAGTATGGA+AGG | + | chr6_3:90772187-90772206 | Msa0964350:intron | 25.0% |
| !! | TTGTTAATTAAGGGTATGTT+TGG | + | chr6_3:90772221-90772240 | Msa0964350:intron | 25.0% |
| ! | ATACTATTTGAGAGAACTTA+TGG | - | chr6_3:90772642-90772661 | None:intergenic | 25.0% |
| !!! | TTTTGTTGTGGATTGTTAAA+TGG | + | chr6_3:90772777-90772796 | Msa0964350:intron | 25.0% |
| !! | TTTGTTGTGGATTGTTAAAT+GGG | + | chr6_3:90772778-90772797 | Msa0964350:intron | 25.0% |
| !!! | TGTTTGATTGGTTTTTTTTG+AGG | + | chr6_3:90772866-90772885 | Msa0964350:intron | 25.0% |
| !! | CTTCATTTTATCTTTTGTGA+TGG | + | chr6_3:90773053-90773072 | Msa0964350:intron | 25.0% |
| ! | GTGAAAACATATTATAGACA+GGG | - | chr6_3:90773245-90773264 | None:intergenic | 25.0% |
| ! | GCAATAGCTTATAATGAATA+AGG | + | chr6_3:90773361-90773380 | Msa0964350:intron | 25.0% |
| ! | ATAGCTTATAATGAATAAGG+GGG | + | chr6_3:90773364-90773383 | Msa0964350:intron | 25.0% |
| !! | ATTATAAAGGATTTTCGTGT+TGG | + | chr6_3:90773527-90773546 | Msa0964350:intron | 25.0% |
| ! | TAGACAAAAGTAAATTTAGC+TGG | + | chr6_3:90773978-90773997 | Msa0964350:intron | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | - | chr6_3:90774111-90774130 | None:intergenic | 25.0% |
| ! | AAAGCAAAAAAGCTCAAATT+TGG | - | chr6_3:90774299-90774318 | None:intergenic | 25.0% |
| ! | CAATAGCAATAAAAGCTTAA+TGG | - | chr6_3:90774514-90774533 | None:intergenic | 25.0% |
| !!! | AGTTTGAGTTTTGTTTTTTC+GGG | + | chr6_3:90774645-90774664 | Msa0964350:intron | 25.0% |
| !!! | ATTACCTTTTATTTATCCAC+GGG | - | chr6_3:90774816-90774835 | None:intergenic | 25.0% |
| !!! | GATTACCTTTTATTTATCCA+CGG | - | chr6_3:90774817-90774836 | None:intergenic | 25.0% |
| ! | TTTATCCTACTGCAAATAAT+TGG | + | chr6_3:90774864-90774883 | Msa0964350:intron | 25.0% |
| !!! | TGGTAACAAAAATTTCTAGT+CGG | - | chr6_3:90774913-90774932 | None:intergenic | 25.0% |
| ! | CACAATAATGAAAAGTTAAG+TGG | - | chr6_3:90774933-90774952 | None:intergenic | 25.0% |
| ! | TTATTGTGCATTCAAAACTT+TGG | + | chr6_3:90774945-90774964 | Msa0964350:intron | 25.0% |
| !! | AACTCATTTCTAGATTTAAG+GGG | + | chr6_3:90775073-90775092 | Msa0964350:intron | 25.0% |
| !! | AATTACTAGTTCTTAACTAC+CGG | - | chr6_3:90775418-90775437 | None:intergenic | 25.0% |
| !!! | AAACCTTTGTTTTGCTAATT+TGG | + | chr6_3:90775465-90775484 | Msa0964350:intron | 25.0% |
| !! | TGAATCTTTTAGATACATTG+GGG | - | chr6_3:90775518-90775537 | None:intergenic | 25.0% |
| ! | CAAAAGACATTAGAATATCA+CGG | - | chr6_3:90775638-90775657 | None:intergenic | 25.0% |
| ! | TGGCAGTTTAAATATTTGTT+AGG | + | chr6_3:90775664-90775683 | Msa0964350:intron | 25.0% |
| !! | CACTTAATAACTCATTTTAG+TGG | - | chr6_3:90775866-90775885 | None:intergenic | 25.0% |
| ! | CTAAAATGAGTTATTAAGTG+AGG | + | chr6_3:90775866-90775885 | Msa0964350:intron | 25.0% |
| !!! | ATTTTGAGATAGAATGTTGA+TGG | - | chr6_3:90776021-90776040 | None:intergenic | 25.0% |
| ! | AAAATGTATTAATGTGTAGC+TGG | + | chr6_3:90776036-90776055 | Msa0964350:intron | 25.0% |
| !! | ATCTCAATATTTCTAATCCA+CGG | - | chr6_3:90776102-90776121 | None:intergenic | 25.0% |
| ! | TCGTAAATGAAACAAAATAG+AGG | + | chr6_3:90776127-90776146 | Msa0964350:intron | 25.0% |
| ! | CGTAAATGAAACAAAATAGA+GGG | + | chr6_3:90776128-90776147 | Msa0964350:intron | 25.0% |
| ! | TTCATACAGACACATAATTA+TGG | - | chr6_3:90776207-90776226 | None:intergenic | 25.0% |
| ! | TCTGTATGAAATTAAAGAGT+TGG | + | chr6_3:90776217-90776236 | Msa0964350:intron | 25.0% |
| !! | GTTTGTGTGTAGAGTTTTAT+TGG | - | chr6_3:90771462-90771481 | None:intergenic | 30.0% |
| AACACATTGTTCGTGAAAAA+TGG | + | chr6_3:90771660-90771679 | Msa0964350:CDS | 30.0% | |
| ! | CTTCTCTTTTCTTCTCTTTT+TGG | + | chr6_3:90771857-90771876 | Msa0964350:intron | 30.0% |
| TTATATGAGTGACAAGTAGT+TGG | + | chr6_3:90772017-90772036 | Msa0964350:intron | 30.0% | |
| TATATGAGTGACAAGTAGTT+GGG | + | chr6_3:90772018-90772037 | Msa0964350:intron | 30.0% | |
| ! | AATTAAGGGTATGTTTGGAT+TGG | + | chr6_3:90772226-90772245 | Msa0964350:intron | 30.0% |
| TATCTATCCAAGCAATGTAT+TGG | + | chr6_3:90772428-90772447 | Msa0964350:intron | 30.0% | |
| AACTAAACCAATACATTGCT+TGG | - | chr6_3:90772438-90772457 | None:intergenic | 30.0% | |
| !!! | AGTCGACACATGATATTTTT+TGG | + | chr6_3:90772666-90772685 | Msa0964350:intron | 30.0% |
| !!! | GTCGACACATGATATTTTTT+GGG | + | chr6_3:90772667-90772686 | Msa0964350:intron | 30.0% |
| !!! | TCGACACATGATATTTTTTG+GGG | + | chr6_3:90772668-90772687 | Msa0964350:intron | 30.0% |
| !!! | TTTGGTTTGTTGTTTTTGAG+TGG | + | chr6_3:90772825-90772844 | Msa0964350:intron | 30.0% |
| !!! | TTGAGTGGTTTTGTTGATTA+AGG | + | chr6_3:90772840-90772859 | Msa0964350:intron | 30.0% |
| !!! | TGAGTGGTTTTGTTGATTAA+GGG | + | chr6_3:90772841-90772860 | Msa0964350:intron | 30.0% |
| ! | TGATTAAGGGTTTGTTTGAT+TGG | + | chr6_3:90772854-90772873 | Msa0964350:intron | 30.0% |
| !! | ACTTATGAACCGATTTGAAT+TGG | + | chr6_3:90772930-90772949 | Msa0964350:intron | 30.0% |
| GGTGAAAACATATTATAGAC+AGG | - | chr6_3:90773246-90773265 | None:intergenic | 30.0% | |
| ATAGAGAGAATAGGGAAATA+AGG | - | chr6_3:90773267-90773286 | None:intergenic | 30.0% | |
| AGCTCATGAAAATAGCTTAT+AGG | + | chr6_3:90773290-90773309 | Msa0964350:intron | 30.0% | |
| TTAGTTGTGAATTCTCAAGT+TGG | + | chr6_3:90773473-90773492 | Msa0964350:intron | 30.0% | |
| !!! | GTGTTGATTGGAATTGTTTT+TGG | + | chr6_3:90773556-90773575 | Msa0964350:intron | 30.0% |
| !!! | TTGATTGGAATTGTTTTTGG+AGG | + | chr6_3:90773559-90773578 | Msa0964350:intron | 30.0% |
| !! | TGGTGTGATGTTTTTATTTG+TGG | + | chr6_3:90773628-90773647 | Msa0964350:intron | 30.0% |
| !! | TGTGATGTTTTTATTTGTGG+TGG | + | chr6_3:90773631-90773650 | Msa0964350:intron | 30.0% |
| !! | GTGATGTTTTTATTTGTGGT+GGG | + | chr6_3:90773632-90773651 | Msa0964350:intron | 30.0% |
| AGTACAAAAACATGTGTTTG+TGG | - | chr6_3:90774010-90774029 | None:intergenic | 30.0% | |
| GATTCATGTTCAATGTAGAA+AGG | + | chr6_3:90774046-90774065 | Msa0964350:intron | 30.0% | |
| TTTCAAATTATTACCGGTGT+CGG | + | chr6_3:90774142-90774161 | Msa0964350:intron | 30.0% | |
| !! | TTTTTAGGGATTAGCAAGTT+AGG | + | chr6_3:90774208-90774227 | Msa0964350:intron | 30.0% |
| !! | TTTTAGGGATTAGCAAGTTA+GGG | + | chr6_3:90774209-90774228 | Msa0964350:intron | 30.0% |
| ! | TGCTTTTAGTCTCTCATTTA+TGG | + | chr6_3:90774320-90774339 | Msa0964350:intron | 30.0% |
| GAGATGAATTAGTTAGTGAA+TGG | + | chr6_3:90774481-90774500 | Msa0964350:intron | 30.0% | |
| !!! | TTCTCTTTTTTGTTGACCTT+TGG | + | chr6_3:90774708-90774727 | Msa0964350:intron | 30.0% |
| !!! | TCTCTTTTTTGTTGACCTTT+GGG | + | chr6_3:90774709-90774728 | Msa0964350:intron | 30.0% |
| CATAAGATATTATCACACAG+AGG | - | chr6_3:90774735-90774754 | None:intergenic | 30.0% | |
| !! | TTACCTTTTATTTATCCACG+GGG | - | chr6_3:90774815-90774834 | None:intergenic | 30.0% |
| TAGTGTAGTTACAATGGTAA+AGG | - | chr6_3:90774991-90775010 | None:intergenic | 30.0% | |
| CAAACTTAGTGTAGTTACAA+TGG | - | chr6_3:90774997-90775016 | None:intergenic | 30.0% | |
| GAATGACTGGTATGAAATAA+GGG | + | chr6_3:90775095-90775114 | Msa0964350:intron | 30.0% | |
| GGTAGTTAAGAACTAGTAAT+TGG | + | chr6_3:90775417-90775436 | Msa0964350:intron | 30.0% | |
| CAACCAAATTAGCAAAACAA+AGG | - | chr6_3:90775471-90775490 | None:intergenic | 30.0% | |
| ! | TCTAATGTCTTTTGCTCTAT+TGG | + | chr6_3:90775644-90775663 | Msa0964350:intron | 30.0% |
| ATTCAGCCACAAAATGTTAT+AGG | - | chr6_3:90775796-90775815 | None:intergenic | 30.0% | |
| !! | TGTGTTTTGTTCATTTTCCT+TGG | + | chr6_3:90776308-90776327 | Msa0964350:three_prime_UTR | 30.0% |
| AAAATACAGTTGTAGTTCAC+AGG | - | chr6_3:90776341-90776360 | None:intergenic | 30.0% | |
| AAGCACACATCATAATAACA+AGG | - | chr6_3:90776479-90776498 | None:intergenic | 30.0% | |
| ATCTCCGAAAGAGTGAAAAA+TGG | + | chr6_3:90771538-90771557 | Msa0964350:exon | 35.0% | |
| TCTCCGAAAGAGTGAAAAAT+GGG | + | chr6_3:90771539-90771558 | Msa0964350:exon | 35.0% | |
| !! | CTTCCCATTTTTCACTCTTT+CGG | - | chr6_3:90771545-90771564 | None:intergenic | 35.0% |
| TGAAAAATGGGAAGGAAGAA+GGG | + | chr6_3:90771551-90771570 | Msa0964350:exon | 35.0% | |
| TTATTCGTGAAAAGCTTCGT+TGG | + | chr6_3:90771705-90771724 | Msa0964350:CDS | 35.0% | |
| !! | AAAAGCTTCGTTGGTGTTAT+AGG | + | chr6_3:90771714-90771733 | Msa0964350:CDS | 35.0% |
| !! | GTTGGTGTTATAGGATTGAA+GGG | + | chr6_3:90771723-90771742 | Msa0964350:CDS | 35.0% |
| AGTATCTTGAGTCTACAAGA+GGG | + | chr6_3:90771783-90771802 | Msa0964350:CDS | 35.0% | |
| AACACAAACCATGAAGAGAA+GGG | - | chr6_3:90771835-90771854 | None:intergenic | 35.0% | |
| AAACACAAACCATGAAGAGA+AGG | - | chr6_3:90771836-90771855 | None:intergenic | 35.0% | |
| TTGTGAATTGTCAAATGGGT+TGG | + | chr6_3:90772144-90772163 | Msa0964350:intron | 35.0% | |
| AAAGAGAGATCAACAAACCA+TGG | - | chr6_3:90772718-90772737 | None:intergenic | 35.0% | |
| ! | GATTGTTAAATGGGTTTGTG+TGG | + | chr6_3:90772787-90772806 | Msa0964350:intron | 35.0% |
| CATCTCACAAGTGTTTATGT+CGG | - | chr6_3:90772974-90772993 | None:intergenic | 35.0% | |
| AAAACAGTGTTTGTCCAAAC+AGG | + | chr6_3:90773218-90773237 | Msa0964350:intron | 35.0% | |
| AAACAGTGTTTGTCCAAACA+GGG | + | chr6_3:90773219-90773238 | Msa0964350:intron | 35.0% | |
| GAGCTATCATAGAGAGAATA+GGG | - | chr6_3:90773275-90773294 | None:intergenic | 35.0% | |
| TGAGCTATCATAGAGAGAAT+AGG | - | chr6_3:90773276-90773295 | None:intergenic | 35.0% | |
| AGTCAGTTGTTAAGTGTCTT+TGG | + | chr6_3:90773394-90773413 | Msa0964350:intron | 35.0% | |
| GTCAGTTGTTAAGTGTCTTT+GGG | + | chr6_3:90773395-90773414 | Msa0964350:intron | 35.0% | |
| TGTTAAGCGAATTGTGAAGT+GGG | + | chr6_3:90773586-90773605 | Msa0964350:intron | 35.0% | |
| !! | TGGGTGATTAAAAGTGTCTT+TGG | + | chr6_3:90773651-90773670 | Msa0964350:intron | 35.0% |
| !! | GGGTGATTAAAAGTGTCTTT+GGG | + | chr6_3:90773652-90773671 | Msa0964350:intron | 35.0% |
| ! | TTCGGTATGCTGTTTGTAAA+AGG | + | chr6_3:90773705-90773724 | Msa0964350:intron | 35.0% |
| !!! | AGGTTTTTAGCTATGAAGCA+TGG | + | chr6_3:90774066-90774085 | Msa0964350:intron | 35.0% |
| TTTGGGAAGGGAAATTGAAA+TGG | + | chr6_3:90774270-90774289 | Msa0964350:intron | 35.0% | |
| AAAAACACAACTTAGCTGAG+AGG | - | chr6_3:90774435-90774454 | None:intergenic | 35.0% | |
| !! | GTTGTGTTTTTGTGTGTGTA+AGG | + | chr6_3:90774444-90774463 | Msa0964350:intron | 35.0% |
| ! | TCGTGTTAATTTTCTGAACC+AGG | + | chr6_3:90774755-90774774 | Msa0964350:intron | 35.0% |
| TTTCCCCGTGGATAAATAAA+AGG | + | chr6_3:90774809-90774828 | Msa0964350:three_prime_UTR | 35.0% | |
| CATGTCCAATTATTTGCAGT+AGG | - | chr6_3:90774872-90774891 | None:intergenic | 35.0% | |
| TTGTGCATTCAAAACTTTGG+TGG | + | chr6_3:90774948-90774967 | Msa0964350:intron | 35.0% | |
| GGAATGACTGGTATGAAATA+AGG | + | chr6_3:90775094-90775113 | Msa0964350:intron | 35.0% | |
| GGTATGAAATAAGGGCAATA+TGG | + | chr6_3:90775103-90775122 | Msa0964350:intron | 35.0% | |
| TGCAAGCGATCTTAATTCAT+TGG | + | chr6_3:90775317-90775336 | Msa0964350:intron | 35.0% | |
| ! | TATCACTTGGTGGCAAAATA+TGG | - | chr6_3:90775375-90775394 | None:intergenic | 35.0% |
| AGATACATTGGGGAAGAATT+TGG | - | chr6_3:90775508-90775527 | None:intergenic | 35.0% | |
| AGATCCTTGATTTCGAAAGA+GGG | - | chr6_3:90775735-90775754 | None:intergenic | 35.0% | |
| AAGATCCTTGATTTCGAAAG+AGG | - | chr6_3:90775736-90775755 | None:intergenic | 35.0% | |
| GTTATAGGTGGAGAAAAAGT+CGG | - | chr6_3:90775781-90775800 | None:intergenic | 35.0% | |
| ! | TCTCCACCTATAACATTTTG+TGG | + | chr6_3:90775787-90775806 | Msa0964350:intron | 35.0% |
| ATGTATTAATGTGTAGCTGG+AGG | + | chr6_3:90776039-90776058 | Msa0964350:intron | 35.0% | |
| TGATAAAACTTCCCTGCAAA+AGG | - | chr6_3:90776244-90776263 | None:intergenic | 35.0% | |
| TATCACCCTAATCAGATTGT+AGG | + | chr6_3:90776259-90776278 | Msa0964350:three_prime_UTR | 35.0% | |
| AAACACAACAGCTTGAACAT+AGG | - | chr6_3:90776295-90776314 | None:intergenic | 35.0% | |
| ! | AACTGTATTTTGCTTTGCCT+TGG | + | chr6_3:90776350-90776369 | Msa0964350:three_prime_UTR | 35.0% |
| ! | AATAAAAGCCTTGTAAGCCA+AGG | - | chr6_3:90776370-90776389 | None:intergenic | 35.0% |
| !!! | GTGTAGAGTTTTATTGGGCT+GGG | - | chr6_3:90771456-90771475 | None:intergenic | 40.0% |
| !!! | TGTGTAGAGTTTTATTGGGC+TGG | - | chr6_3:90771457-90771476 | None:intergenic | 40.0% |
| CGAAAGAGTGAAAAATGGGA+AGG | + | chr6_3:90771543-90771562 | Msa0964350:exon | 40.0% | |
| GTGAAAAATGGGAAGGAAGA+AGG | + | chr6_3:90771550-90771569 | Msa0964350:exon | 40.0% | |
| GAAAAATGGGAAGGAAGAAG+GGG | + | chr6_3:90771552-90771571 | Msa0964350:exon | 40.0% | |
| GAATCCATACAAAGATCCAG+TGG | + | chr6_3:90771619-90771638 | Msa0964350:CDS | 40.0% | |
| !! | CGTTGGTGTTATAGGATTGA+AGG | + | chr6_3:90771722-90771741 | Msa0964350:CDS | 40.0% |
| CAGTATCTTGAGTCTACAAG+AGG | + | chr6_3:90771782-90771801 | Msa0964350:CDS | 40.0% | |
| !! | TTGGATTGGTTGCAAGAACT+TGG | + | chr6_3:90772240-90772259 | Msa0964350:intron | 40.0% |
| !! | TGGATTGGTTGCAAGAACTT+GGG | + | chr6_3:90772241-90772260 | Msa0964350:intron | 40.0% |
| !! | TTTATCGACTTGCAAGCACT+TGG | + | chr6_3:90772461-90772480 | Msa0964350:intron | 40.0% |
| !! | TTATCGACTTGCAAGCACTT+GGG | + | chr6_3:90772462-90772481 | Msa0964350:intron | 40.0% |
| ! | TTGTGTGGTGTGAAAAGTGT+TGG | + | chr6_3:90772802-90772821 | Msa0964350:intron | 40.0% |
| !! | TGGTGTGAAAAGTGTTGGTT+TGG | + | chr6_3:90772807-90772826 | Msa0964350:intron | 40.0% |
| CGACATAAACACTTGTGAGA+TGG | + | chr6_3:90772972-90772991 | Msa0964350:intron | 40.0% | |
| AGTGTCTTTGGGTAGCTAAA+AGG | + | chr6_3:90773406-90773425 | Msa0964350:intron | 40.0% | |
| !! | GGTAGCTAAAAGGTGTCTTT+GGG | + | chr6_3:90773416-90773435 | Msa0964350:intron | 40.0% |
| GCATTCCATTGTATGCTGTT+TGG | + | chr6_3:90773438-90773457 | Msa0964350:intron | 40.0% | |
| CTAAGCCAAACAGCATACAA+TGG | - | chr6_3:90773446-90773465 | None:intergenic | 40.0% | |
| CTGTTAAGCGAATTGTGAAG+TGG | + | chr6_3:90773585-90773604 | Msa0964350:intron | 40.0% | |
| GTTAAGCGAATTGTGAAGTG+GGG | + | chr6_3:90773587-90773606 | Msa0964350:intron | 40.0% | |
| GGTGTTTGTAATTGCTCTCA+TGG | + | chr6_3:90773608-90773627 | Msa0964350:intron | 40.0% | |
| AAACCTATGAAGCACGGATA+TGG | - | chr6_3:90774191-90774210 | None:intergenic | 40.0% | |
| ! | TCCGTGCTTCATAGGTTTTT+AGG | + | chr6_3:90774193-90774212 | Msa0964350:intron | 40.0% |
| CCCTAAAAACCTATGAAGCA+CGG | - | chr6_3:90774197-90774216 | None:intergenic | 40.0% | |
| ! | CCGTGCTTCATAGGTTTTTA+GGG | + | chr6_3:90774194-90774213 | Msa0964350:intron | 40.0% |
| ATTCTTTCGCCTGTGCTTAA+AGG | + | chr6_3:90774242-90774261 | Msa0964350:intron | 40.0% | |
| TTCTTTCGCCTGTGCTTAAA+GGG | + | chr6_3:90774243-90774262 | Msa0964350:intron | 40.0% | |
| !! | TGTGCTTAAAGGGTGTCTTT+GGG | + | chr6_3:90774253-90774272 | Msa0964350:intron | 40.0% |
| !! | TTAAAGGGTGTCTTTGGGAA+GGG | + | chr6_3:90774258-90774277 | Msa0964350:intron | 40.0% |
| GCCAAGATGAAATTGAAGCA+AGG | + | chr6_3:90774588-90774607 | Msa0964350:intron | 40.0% | |
| GCCTTGCTTCAATTTCATCT+TGG | - | chr6_3:90774592-90774611 | None:intergenic | 40.0% | |
| TTATCCACGGGGAAATCATT+CGG | - | chr6_3:90774804-90774823 | None:intergenic | 40.0% | |
| TGCATTCAAAACTTTGGTGG+AGG | + | chr6_3:90774951-90774970 | Msa0964350:intron | 40.0% | |
| GCATTCAAAACTTTGGTGGA+GGG | + | chr6_3:90774952-90774971 | Msa0964350:intron | 40.0% | |
| CTAGATTTAAGGGGAATGAC+TGG | + | chr6_3:90775082-90775101 | Msa0964350:intron | 40.0% | |
| ! | ACTTGGTGGCAAAATATGGA+GGG | - | chr6_3:90775371-90775390 | None:intergenic | 40.0% |
| ATGAGTCGTCAACTATCACT+TGG | - | chr6_3:90775388-90775407 | None:intergenic | 40.0% | |
| GTTGAACTATGCATCTGCAT+AGG | - | chr6_3:90775547-90775566 | None:intergenic | 40.0% | |
| ATCTCCCTCTTTCGAAATCA+AGG | + | chr6_3:90775728-90775747 | Msa0964350:intron | 40.0% | |
| TAGTCCCCAAGTGTTTGAAA+TGG | + | chr6_3:90775755-90775774 | Msa0964350:intron | 40.0% | |
| CAGCCACAAAATGTTATAGG+TGG | - | chr6_3:90775793-90775812 | None:intergenic | 40.0% | |
| !!! | GTGGCTGAATTTTGATGATG+TGG | + | chr6_3:90775806-90775825 | Msa0964350:intron | 40.0% |
| !! | AAGTTTTGGCACTAAAACCG+TGG | + | chr6_3:90776082-90776101 | Msa0964350:intron | 40.0% |
| !! | TAAAGAGTTGGTCCTTTTGC+AGG | + | chr6_3:90776229-90776248 | Msa0964350:intron | 40.0% |
| !! | AAAGAGTTGGTCCTTTTGCA+GGG | + | chr6_3:90776230-90776249 | Msa0964350:intron | 40.0% |
| CTCCACCTACAATCTGATTA+GGG | - | chr6_3:90776267-90776286 | None:intergenic | 40.0% | |
| AGTTCACAGGAAATTGACCA+AGG | - | chr6_3:90776328-90776347 | None:intergenic | 40.0% | |
| GGATCTTTGTATGGATTCGC+CGG | - | chr6_3:90771617-90771636 | None:intergenic | 45.0% | |
| ATCGCCACTGGATCTTTGTA+TGG | - | chr6_3:90771626-90771645 | None:intergenic | 45.0% | |
| AGTGGCGATGCTTGAAATGA+GGG | + | chr6_3:90771637-90771656 | Msa0964350:CDS | 45.0% | |
| CTTGAGTCTACAAGAGGGAT+TGG | + | chr6_3:90771788-90771807 | Msa0964350:CDS | 45.0% | |
| ! | AGTCTACAAGAGGGATTGGT+TGG | + | chr6_3:90771792-90771811 | Msa0964350:CDS | 45.0% |
| !! | GTCTACAAGAGGGATTGGTT+GGG | + | chr6_3:90771793-90771812 | Msa0964350:CDS | 45.0% |
| !! | TCTACAAGAGGGATTGGTTG+GGG | + | chr6_3:90771794-90771813 | Msa0964350:CDS | 45.0% |
| ATGAGTGACAAGTAGTTGGG+AGG | + | chr6_3:90772021-90772040 | Msa0964350:intron | 45.0% | |
| ACAAGTAGTTGGGAGGCTTA+TGG | + | chr6_3:90772028-90772047 | Msa0964350:intron | 45.0% | |
| AGTCACTACTCTTCTCTCCA+TGG | + | chr6_3:90772698-90772717 | Msa0964350:intron | 45.0% | |
| ATTATAGACAGGGCCCTGTT+TGG | - | chr6_3:90773235-90773254 | None:intergenic | 45.0% | |
| !! | GGGTAGCTAAAAGGTGTCTT+TGG | + | chr6_3:90773415-90773434 | Msa0964350:intron | 45.0% |
| !! | TGTTGGTTCGCTGTGTTGAT+TGG | + | chr6_3:90773544-90773563 | Msa0964350:intron | 45.0% |
| ATGAAGCACGGATATGGACA+CGG | - | chr6_3:90774185-90774204 | None:intergenic | 45.0% | |
| TGTCCATATCCGTGCTTCAT+AGG | + | chr6_3:90774185-90774204 | Msa0964350:intron | 45.0% | |
| CAAAGACACCCTTTAAGCAC+AGG | - | chr6_3:90774254-90774273 | None:intergenic | 45.0% | |
| !! | CTGTGCTTAAAGGGTGTCTT+TGG | + | chr6_3:90774252-90774271 | Msa0964350:intron | 45.0% |
| !! | CTTAAAGGGTGTCTTTGGGA+AGG | + | chr6_3:90774257-90774276 | Msa0964350:intron | 45.0% |
| AACACAACTTAGCTGAGAGG+AGG | - | chr6_3:90774432-90774451 | None:intergenic | 45.0% | |
| ATTATCACACAGAGGCCCAA+AGG | - | chr6_3:90774727-90774746 | None:intergenic | 45.0% | |
| TGAACCAGGACCAAAAGTTG+AGG | + | chr6_3:90774769-90774788 | Msa0964350:intron | 45.0% | |
| ! | GACTCAACTGCCTCAACTTT+TGG | - | chr6_3:90774782-90774801 | None:intergenic | 45.0% |
| AATAAGGGCAATATGGCTCC+TGG | + | chr6_3:90775110-90775129 | Msa0964350:intron | 45.0% | |
| TGTCACGCGTCATTAGATGA+AGG | + | chr6_3:90775240-90775259 | Msa0964350:intron | 45.0% | |
| GGATAGGAAGCAAGGATAAG+TGG | - | chr6_3:90775347-90775366 | None:intergenic | 45.0% | |
| GCAAAATATGGAGGGAGGAT+AGG | - | chr6_3:90775363-90775382 | None:intergenic | 45.0% | |
| ! | CACTTGGTGGCAAAATATGG+AGG | - | chr6_3:90775372-90775391 | None:intergenic | 45.0% |
| AGTCGTCAACTATCACTTGG+TGG | - | chr6_3:90775385-90775404 | None:intergenic | 45.0% | |
| TTGACGACTCATTGCAATGC+CGG | + | chr6_3:90775396-90775415 | Msa0964350:intron | 45.0% | |
| TCGGCCATTTCAAACACTTG+GGG | - | chr6_3:90775762-90775781 | None:intergenic | 45.0% | |
| GTCGGCCATTTCAAACACTT+GGG | - | chr6_3:90775763-90775782 | None:intergenic | 45.0% | |
| AGTCGGCCATTTCAAACACT+TGG | - | chr6_3:90775764-90775783 | None:intergenic | 45.0% | |
| CACCCTAATCAGATTGTAGG+TGG | + | chr6_3:90776262-90776281 | Msa0964350:three_prime_UTR | 45.0% | |
| CCTCCACCTACAATCTGATT+AGG | - | chr6_3:90776268-90776287 | None:intergenic | 45.0% | |
| CCTAATCAGATTGTAGGTGG+AGG | + | chr6_3:90776265-90776284 | Msa0964350:three_prime_UTR | 45.0% | |
| TTGCTTTGCCTTGGCTTACA+AGG | + | chr6_3:90776359-90776378 | Msa0964350:three_prime_UTR | 45.0% | |
| !! | AAATAAAATATATACATATT+TGG | - | chr6_3:90774561-90774580 | None:intergenic | 5.0% |
| CCGGATCGAAATCATCTGGT+GGG | - | chr6_3:90771598-90771617 | None:intergenic | 50.0% | |
| CCCACCAGATGATTTCGATC+CGG | + | chr6_3:90771595-90771614 | Msa0964350:CDS | 50.0% | |
| TTCGCCGGATCGAAATCATC+TGG | - | chr6_3:90771602-90771621 | None:intergenic | 50.0% | |
| ! | CTCATTTCAAGCATCGCCAC+TGG | - | chr6_3:90771638-90771657 | None:intergenic | 50.0% |
| CAGTGGCGATGCTTGAAATG+AGG | + | chr6_3:90771636-90771655 | Msa0964350:CDS | 50.0% | |
| !! | CTACAAGAGGGATTGGTTGG+GGG | + | chr6_3:90771795-90771814 | Msa0964350:CDS | 50.0% |
| ! | ACTGCCTCAACTTTTGGTCC+TGG | - | chr6_3:90774776-90774795 | None:intergenic | 50.0% |
| TGGTGGCAAAATATGGAGGG+AGG | - | chr6_3:90775368-90775387 | None:intergenic | 50.0% | |
| ! | GGGAAGGAAGAAGGGGTATG+TGG | + | chr6_3:90771559-90771578 | Msa0964350:CDS | 55.0% |
| GCCGGATCGAAATCATCTGG+TGG | - | chr6_3:90771599-90771618 | None:intergenic | 55.0% | |
| !! | GGGATTGGTTGGGGGAAAGA+TGG | + | chr6_3:90771803-90771822 | Msa0964350:CDS | 55.0% |
| GGTCGTCACCCTTCTCTTCA+TGG | + | chr6_3:90771824-90771843 | Msa0964350:CDS | 55.0% | |
| GAGTCCGAATGATTTCCCCG+TGG | + | chr6_3:90774797-90774816 | Msa0964350:exon | 55.0% | |
| TGGAGGGAGGATAGGAAGCA+AGG | - | chr6_3:90775355-90775374 | None:intergenic | 55.0% | |
| CGACACAGACATGCCGACAC+CGG | - | chr6_3:90774158-90774177 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 90771447 | 90776528 | 90771447 | ID=Msa0964350;Name=Msa0964350 |
| chr6_3 | mRNA | 90771447 | 90776528 | 90771447 | ID=Msa0964350-mRNA-1;Parent=Msa0964350;Name=Msa0964350-mRNA-1;_AED=0.01;_eAED=0.01;_QI=110|1|1|1|0|0.33|3|300|106 |
| chr6_3 | exon | 90771447 | 90771845 | 90771447 | ID=Msa0964350-mRNA-1:exon:16312;Parent=Msa0964350-mRNA-1 |
| chr6_3 | exon | 90774777 | 90774830 | 90774777 | ID=Msa0964350-mRNA-1:exon:16313;Parent=Msa0964350-mRNA-1 |
| chr6_3 | exon | 90776251 | 90776528 | 90776251 | ID=Msa0964350-mRNA-1:exon:16314;Parent=Msa0964350-mRNA-1 |
| chr6_3 | five_prime_UTR | 90771447 | 90771556 | 90771447 | ID=Msa0964350-mRNA-1:five_prime_utr;Parent=Msa0964350-mRNA-1 |
| chr6_3 | CDS | 90771557 | 90771845 | 90771557 | ID=Msa0964350-mRNA-1:cds;Parent=Msa0964350-mRNA-1 |
| chr6_3 | CDS | 90774777 | 90774808 | 90774777 | ID=Msa0964350-mRNA-1:cds;Parent=Msa0964350-mRNA-1 |
| chr6_3 | three_prime_UTR | 90774809 | 90774830 | 90774809 | ID=Msa0964350-mRNA-1:three_prime_utr;Parent=Msa0964350-mRNA-1 |
| chr6_3 | three_prime_UTR | 90776251 | 90776528 | 90776251 | ID=Msa0964350-mRNA-1:three_prime_utr;Parent=Msa0964350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
