AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0402330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0402330 MtrunA17_Chr3g0091791 95.652 138 6 0 1 138 1 138 5.45e-94 268
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0402330 AT1G26550.1 87.603 121 15 0 18 138 16 136 1.12e-68 204

Find 67 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACATGAAAGGTTTGAATT+TGG 0.166483 3_2:-30317180 None:intergenic
GTTGCAGAGTTTAGAAATTC+AGG 0.225335 3_2:+30317061 None:intergenic
AAAGATGGCTGGCCCATTTC+AGG 0.234412 3_2:-30314437 Msa0402330:CDS
AACATGAAAGGTTTGAATTT+GGG 0.296289 3_2:-30317179 None:intergenic
CATATATAATAACAACTAGA+AGG 0.357563 3_2:+30314347 None:intergenic
ACCATCTTGCAGCTTCTTGT+AGG 0.370602 3_2:+30315181 None:intergenic
TGGGTCTGTGCTACACGAAA+TGG 0.418234 3_2:-30317151 Msa0402330:five_prime_UTR
TTGAAGGCAACTTCCTGAAA+TGG 0.431848 3_2:+30314424 None:intergenic
TTGGCTTGACAATGGGGATA+AGG 0.432340 3_2:-30315159 Msa0402330:CDS
GAGTATTCTGAATGCCCATC+AGG 0.445595 3_2:-30314496 Msa0402330:CDS
TATACCTTTGCAAACTCTGC+TGG 0.446252 3_2:+30315131 None:intergenic
TCTCCACCCTTCTTTCCTGA+TGG 0.455060 3_2:+30314481 None:intergenic
CTCCACCCTTCTTTCCTGAT+GGG 0.462426 3_2:+30314482 None:intergenic
GGTTTGAATTTGGGCCCAAT+GGG 0.464112 3_2:-30317170 Msa0402330:five_prime_UTR
GGGAAAGCTGCTGATGGGCT+TGG 0.479109 3_2:-30315605 Msa0402330:CDS
AGGTTTGAATTTGGGCCCAA+TGG 0.481040 3_2:-30317171 Msa0402330:five_prime_UTR
GGAGCACTGGTAACTCCAAC+AGG 0.481302 3_2:+30314397 None:intergenic
CGCAAAGGCAAAGGAGTCAA+AGG 0.482750 3_2:-30315690 Msa0402330:CDS
GGCAAAGGAGTCAAAGGGTA+AGG 0.483433 3_2:-30315684 Msa0402330:CDS
TTCGTGTAGCACAGACCCAT+TGG 0.485171 3_2:+30317155 None:intergenic
GGAAAGAAGGGTGGAGACCT+TGG 0.487014 3_2:-30314475 Msa0402330:CDS
ATGTGATTCCTCGTCTCGAC+TGG 0.487810 3_2:-30317127 Msa0402330:five_prime_UTR
GTCAAAGGGTAAGGGAAAGC+AGG 0.489595 3_2:-30315675 Msa0402330:CDS
GAGAATGCTTCCAAGGGAAA+AGG 0.493127 3_2:-30315635 Msa0402330:CDS
TGAATGCCCATCAGGAAAGA+AGG 0.494243 3_2:-30314488 Msa0402330:CDS
TGAAGGCAACTTCCTGAAAT+GGG 0.494251 3_2:+30314425 None:intergenic
ATGGTTTCCACGGGGAAAGA+TGG 0.495650 3_2:-30314452 Msa0402330:CDS
GAGACCTTGGATGGTTTCCA+CGG 0.503599 3_2:-30314462 Msa0402330:CDS
AACTCCAACAGGTGTGTTGA+AGG 0.504286 3_2:+30314408 None:intergenic
TCGTGTAGCACAGACCCATT+GGG 0.508316 3_2:+30317156 None:intergenic
AAGATGGTTGGCTTGACAAT+GGG 0.509183 3_2:-30315166 Msa0402330:CDS
CGTTGATTTGAAAGGAGCAC+TGG 0.509492 3_2:+30314384 None:intergenic
TGAATAGTTGTTCGAACGAT+GGG 0.520110 3_2:-30315719 Msa0402330:intron
AAAGGTGGGAAAGCTGCTGA+TGG 0.525616 3_2:-30315611 Msa0402330:CDS
GAGCAATACGTTGATTTGAA+AGG 0.530210 3_2:+30314376 None:intergenic
TTTCCACGGGGAAAGATGGC+TGG 0.533452 3_2:-30314448 Msa0402330:CDS
GGTACTTGCACTTATGTCAA+AGG 0.560594 3_2:-30315584 Msa0402330:intron
AGACCTTGGATGGTTTCCAC+GGG 0.562266 3_2:-30314461 Msa0402330:CDS
GCTTCCAAGGGAAAAGGAAA+AGG 0.563501 3_2:-30315629 Msa0402330:CDS
AAGTGATGAGAATGCTTCCA+AGG 0.564213 3_2:-30315642 Msa0402330:CDS
AGAAGGGTGGAGACCTTGGA+TGG 0.573215 3_2:-30314471 Msa0402330:CDS
AAATTCAGGAAGAACAATCA+AGG 0.573745 3_2:+30317075 None:intergenic
TCCAAGGGAAAAGGAAAAGG+TGG 0.576313 3_2:-30315626 Msa0402330:CDS
GTTGCCTTCAACACACCTGT+TGG 0.577492 3_2:-30314412 Msa0402330:CDS
ATGAATAGTTGTTCGAACGA+TGG 0.579048 3_2:-30315720 Msa0402330:intron
GCAAAGGCAAAGGAGTCAAA+GGG 0.585236 3_2:-30315689 Msa0402330:CDS
AAGGGAAAGCAGGCTGCAAG+TGG 0.585506 3_2:-30315665 Msa0402330:CDS
CAAGATGGTTGGCTTGACAA+TGG 0.586005 3_2:-30315167 Msa0402330:CDS
ACAAGAAGCTGCAAGATGGT+TGG 0.586477 3_2:-30315178 Msa0402330:CDS
GGGAAAAGACGCAAAGGCAA+AGG 0.594129 3_2:-30315699 Msa0402330:CDS
GAATGCCCATCAGGAAAGAA+GGG 0.596490 3_2:-30314487 Msa0402330:CDS
GCCTACAAGAAGCTGCAAGA+TGG 0.599336 3_2:-30315182 Msa0402330:CDS
AAGGTGGGAAAGCTGCTGAT+GGG 0.609652 3_2:-30315610 Msa0402330:CDS
AACGATGGGAAAAGACGCAA+AGG 0.622639 3_2:-30315705 Msa0402330:exon
TCCTCCAGCAGAGTTTGCAA+AGG 0.623533 3_2:-30315135 Msa0402330:intron
ACCTTTGCAAACTCTGCTGG+AGG 0.624084 3_2:+30315134 None:intergenic
ATATATAATAACAACTAGAA+GGG 0.625968 3_2:+30314348 None:intergenic
TTCCCCGTGGAAACCATCCA+AGG 0.629084 3_2:+30314458 None:intergenic
GCAAAGGAGTCAAAGGGTAA+GGG 0.629245 3_2:-30315683 Msa0402330:CDS
CATATCTTATGTGAGAAACA+AGG 0.634519 3_2:-30315218 Msa0402330:CDS
AGTGATGAGAATGCTTCCAA+GGG 0.642736 3_2:-30315641 Msa0402330:CDS
TGCCCATCAGGAAAGAAGGG+TGG 0.643391 3_2:-30314484 Msa0402330:CDS
CCAAGGGAAAAGGAAAAGGT+GGG 0.647496 3_2:-30315625 Msa0402330:CDS
AGATGGTTGGCTTGACAATG+GGG 0.681394 3_2:-30315165 Msa0402330:CDS
TATTCACACCAGTCGAGACG+AGG 0.685763 3_2:+30317119 None:intergenic
GGGCCAGCCATCTTTCCCCG+TGG 0.694677 3_2:+30314445 None:intergenic
GACCTTGGATGGTTTCCACG+GGG 0.727134 3_2:-30314460 Msa0402330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTAATAGATGATAAT+TGG - chr3_2:30314677-30314696 Msa0402330:intron 10.0%
!!! TATTATTATTTTCTTTACTT+TGG - chr3_2:30316396-30316415 Msa0402330:intron 10.0%
!!! TTTTAAAAGCAAATTTGAAA+CGG + chr3_2:30314818-30314837 None:intergenic 15.0%
!!! TTCAAATTTGCTTTTAAAAA+TGG - chr3_2:30314819-30314838 Msa0402330:intron 15.0%
!!! TCAAATTTGCTTTTAAAAAT+GGG - chr3_2:30314820-30314839 Msa0402330:intron 15.0%
!! ATCCTTATTATTCATTTATA+TGG - chr3_2:30314999-30315018 Msa0402330:intron 15.0%
!! ATCCATATAAATGAATAATA+AGG + chr3_2:30315004-30315023 None:intergenic 15.0%
!!! AAATGCTTTTCAAAAATAAA+CGG - chr3_2:30316177-30316196 Msa0402330:intron 15.0%
!!! ATATTTTGATATCAACAAAT+CGG + chr3_2:30316786-30316805 None:intergenic 15.0%
!! ATATATAATAACAACTAGAA+GGG + chr3_2:30317161-30317180 None:intergenic 15.0%
!!! GATTAGTTAGCTTATAATTA+TGG - chr3_2:30314617-30314636 Msa0402330:intron 20.0%
!! TTAGCTTATAATTATGGTTT+GGG - chr3_2:30314623-30314642 Msa0402330:intron 20.0%
!! AATTTAGTCCTATAAAATCA+CGG - chr3_2:30314853-30314872 Msa0402330:intron 20.0%
!!! TTGCAAATAGATTGAAATTT+TGG - chr3_2:30316080-30316099 Msa0402330:intron 20.0%
!!! TTGTTTTCATTGTTTTTGAA+AGG - chr3_2:30316116-30316135 Msa0402330:intron 20.0%
!!! AATGCTTTTCAAAAATAAAC+GGG - chr3_2:30316178-30316197 Msa0402330:intron 20.0%
!! TTAAATAGAAAGCCAAATAA+GGG + chr3_2:30316600-30316619 None:intergenic 20.0%
!! TTTAAATAGAAAGCCAAATA+AGG + chr3_2:30316601-30316620 None:intergenic 20.0%
!!! ATTTGGCTTTCTATTTAAAA+TGG - chr3_2:30316602-30316621 Msa0402330:intron 20.0%
!!! TTTGGCTTTCTATTTAAAAT+GGG - chr3_2:30316603-30316622 Msa0402330:intron 20.0%
!! CATATATAATAACAACTAGA+AGG + chr3_2:30317162-30317181 None:intergenic 20.0%
!! TTTTATTCATTTGTGCTTAG+AGG - chr3_2:30314470-30314489 Msa0402330:CDS 25.0%
! TGTAGATTGAAATTCAACTT+GGG + chr3_2:30314584-30314603 None:intergenic 25.0%
! ATGTAGATTGAAATTCAACT+TGG + chr3_2:30314585-30314604 None:intergenic 25.0%
!! GTTAGCTTATAATTATGGTT+TGG - chr3_2:30314622-30314641 Msa0402330:intron 25.0%
! ATTTAGTCCTATAAAATCAC+GGG - chr3_2:30314854-30314873 Msa0402330:intron 25.0%
! AAAAAGGACTAAATCATCTA+AGG + chr3_2:30314894-30314913 None:intergenic 25.0%
!! AGATGATTTAGTCCTTTTTA+AGG - chr3_2:30314895-30314914 Msa0402330:intron 25.0%
! TTATCTCTATGGATATCAAA+TGG - chr3_2:30315422-30315441 Msa0402330:intron 25.0%
! AATAAATCAGAAACTAACTC+TGG - chr3_2:30315571-30315590 Msa0402330:intron 25.0%
! AATTTCTTCATCTTCTATGT+TGG + chr3_2:30315660-30315679 None:intergenic 25.0%
! GTTGAAGTGAAAATAAAAAC+AGG + chr3_2:30316002-30316021 None:intergenic 25.0%
! AACTGTAAAATGAACATAGT+GGG + chr3_2:30316059-30316078 None:intergenic 25.0%
! AAACTGTAAAATGAACATAG+TGG + chr3_2:30316060-30316079 None:intergenic 25.0%
!! ATGCTTTTCAAAAATAAACG+GGG - chr3_2:30316179-30316198 Msa0402330:intron 25.0%
! CGTAGAATTACATTCATTTA+TGG - chr3_2:30316244-30316263 Msa0402330:intron 25.0%
! TATACACTAGGATAAAACAT+AGG - chr3_2:30316423-30316442 Msa0402330:intron 25.0%
!! ACTGCTTGGAAATTTTTAAA+AGG - chr3_2:30316494-30316513 Msa0402330:intron 25.0%
!!! CTGCTTGGAAATTTTTAAAA+GGG - chr3_2:30316495-30316514 Msa0402330:intron 25.0%
!! TTGGCTTTCTATTTAAAATG+GGG - chr3_2:30316604-30316623 Msa0402330:intron 25.0%
! GAAACTTATTATGTGGTAAA+TGG - chr3_2:30316631-30316650 Msa0402330:intron 25.0%
AAATTCAGGAAGAACAATCA+AGG + chr3_2:30314434-30314453 None:intergenic 30.0%
AACAGTGAACTGAAACAAAA+AGG + chr3_2:30314517-30314536 None:intergenic 30.0%
! TTGAAAACCCGTGATTTTAT+AGG + chr3_2:30314864-30314883 None:intergenic 30.0%
TTGGTTGCATAATATATGCA+TGG + chr3_2:30314956-30314975 None:intergenic 30.0%
TCATTGAAAAAAAGTCTACG+AGG - chr3_2:30315167-30315186 Msa0402330:CDS 30.0%
ATGAATGTTGCTAGTCATTT+CGG - chr3_2:30315322-30315341 Msa0402330:intron 30.0%
AGATTACAGTTAGAATCAGT+TGG + chr3_2:30315549-30315568 None:intergenic 30.0%
ACTGTAAAATGAACATAGTG+GGG + chr3_2:30316058-30316077 None:intergenic 30.0%
CATATCTTATGTGAGAAACA+AGG - chr3_2:30316288-30316307 Msa0402330:intron 30.0%
! TACTTTGGAAGTTATACACT+AGG - chr3_2:30316411-30316430 Msa0402330:intron 30.0%
AAAAAGAGACTATAACTGCT+TGG - chr3_2:30316480-30316499 Msa0402330:intron 30.0%
GTATACACTAAACCCTTATT+TGG - chr3_2:30316585-30316604 Msa0402330:intron 30.0%
!! ACATGCATATGTATTTTGGA+GGG + chr3_2:30316875-30316894 None:intergenic 30.0%
! ACTGACATGCATATGTATTT+TGG + chr3_2:30316879-30316898 None:intergenic 30.0%
GTTGCAGAGTTTAGAAATTC+AGG + chr3_2:30314448-30314467 None:intergenic 35.0%
TCAACTTGGGTTTCAGAAAA+TGG + chr3_2:30314571-30314590 None:intergenic 35.0%
!!! TCCTTTTTAAGGTGAATGAG+TGG - chr3_2:30314906-30314925 Msa0402330:intron 35.0%
!!! CCTTTTTAAGGTGAATGAGT+GGG - chr3_2:30314907-30314926 Msa0402330:intron 35.0%
!!! CTTTTTAAGGTGAATGAGTG+GGG - chr3_2:30314908-30314927 Msa0402330:intron 35.0%
! CATAATATATGCATGGACTG+GGG + chr3_2:30314949-30314968 None:intergenic 35.0%
GCATAATATATGCATGGACT+GGG + chr3_2:30314950-30314969 None:intergenic 35.0%
TGCATAATATATGCATGGAC+TGG + chr3_2:30314951-30314970 None:intergenic 35.0%
ATGCTGATGCTAAACATGAA+AGG - chr3_2:30315069-30315088 Msa0402330:intron 35.0%
CTAGCTAACCTTTGAATAAG+TGG - chr3_2:30315127-30315146 Msa0402330:intron 35.0%
TCACAACTCAATTTCAGTCA+AGG + chr3_2:30315220-30315239 None:intergenic 35.0%
! TTGAGTTGTGAAACTTAGAC+AGG - chr3_2:30315229-30315248 Msa0402330:intron 35.0%
!!! TTACTGATTTTGCTTTCTCC+AGG - chr3_2:30315252-30315271 Msa0402330:intron 35.0%
ATGAAGATTACACTTACACC+TGG + chr3_2:30315273-30315292 None:intergenic 35.0%
! TCTATATGTGCTCGTTTTGT+TGG - chr3_2:30315395-30315414 Msa0402330:intron 35.0%
!! CTATATGTGCTCGTTTTGTT+GGG - chr3_2:30315396-30315415 Msa0402330:intron 35.0%
! TTGTTGGGTTGTTATCTCTA+TGG - chr3_2:30315411-30315430 Msa0402330:intron 35.0%
TAGGTATCAAAACGAAAACG+TGG - chr3_2:30315465-30315484 Msa0402330:intron 35.0%
! AGAAAGCGTGTTTAACACTA+CGG - chr3_2:30315503-30315522 Msa0402330:intron 35.0%
ATGAATAGTTGTTCGAACGA+TGG - chr3_2:30315786-30315805 Msa0402330:intron 35.0%
TGAATAGTTGTTCGAACGAT+GGG - chr3_2:30315787-30315806 Msa0402330:intron 35.0%
ATTGAAGTAAATGAACCCTG+AGG + chr3_2:30315974-30315993 None:intergenic 35.0%
TGAAAGAAATTTAGCGTGTC+TGG + chr3_2:30316214-30316233 None:intergenic 35.0%
GGAAGGGGATAAAATAACTA+TGG + chr3_2:30316664-30316683 None:intergenic 35.0%
!! ATGCATATGTATTTTGGAGG+GGG + chr3_2:30316873-30316892 None:intergenic 35.0%
!! CATGCATATGTATTTTGGAG+GGG + chr3_2:30316874-30316893 None:intergenic 35.0%
!! GACATGCATATGTATTTTGG+AGG + chr3_2:30316876-30316895 None:intergenic 35.0%
!! GAGCAATACGTTGATTTGAA+AGG + chr3_2:30317133-30317152 None:intergenic 35.0%
AAGCTGAAATGCAAGTTGCT+AGG + chr3_2:30314759-30314778 None:intergenic 40.0%
CCCACTCATTCACCTTAAAA+AGG + chr3_2:30314910-30314929 None:intergenic 40.0%
AACCAACTGAGCTATGATCA+CGG - chr3_2:30314970-30314989 Msa0402330:intron 40.0%
CATAAGCGCCACTTATTCAA+AGG + chr3_2:30315138-30315157 None:intergenic 40.0%
AAAGTCTACGAGGTCTTCTT+AGG - chr3_2:30315177-30315196 Msa0402330:CDS 40.0%
! TCAAGGTGTTCAACCAAATG+TGG + chr3_2:30315203-30315222 None:intergenic 40.0%
TGGAGCTCGTGAATCAATTT+CGG - chr3_2:30315364-30315383 Msa0402330:intron 40.0%
!! TGACGTCGATTTCTTTAGCT+AGG - chr3_2:30315446-30315465 Msa0402330:intron 40.0%
GTGGAGATTGTTAGATGATC+AGG + chr3_2:30315613-30315632 None:intergenic 40.0%
TATCACACATCAGGTTACAG+TGG + chr3_2:30315632-30315651 None:intergenic 40.0%
TTGGATGTCTATCACACATC+AGG + chr3_2:30315641-30315660 None:intergenic 40.0%
AAGTGATGAGAATGCTTCCA+AGG - chr3_2:30315864-30315883 Msa0402330:intron 40.0%
AGTGATGAGAATGCTTCCAA+GGG - chr3_2:30315865-30315884 Msa0402330:intron 40.0%
GGTACTTGCACTTATGTCAA+AGG - chr3_2:30315922-30315941 Msa0402330:intron 40.0%
! GAACATAGTGGGGAAACTAT+TGG + chr3_2:30316048-30316067 None:intergenic 40.0%
!! AAGATGGTTGGCTTGACAAT+GGG - chr3_2:30316340-30316359 Msa0402330:intron 40.0%
TATACCTTTGCAAACTCTGC+TGG + chr3_2:30316378-30316397 None:intergenic 40.0%
GGGCTGAGAAACTTATTATG+TGG - chr3_2:30316624-30316643 Msa0402330:intron 40.0%
GCATTGAATCCATTTCTGAG+CGG + chr3_2:30316685-30316704 None:intergenic 40.0%
GTCAGTAAATACCCGTCAAT+GGG + chr3_2:30316833-30316852 None:intergenic 40.0%
!! TGCATATGTATTTTGGAGGG+GGG + chr3_2:30316872-30316891 None:intergenic 40.0%
!! ATGCATGTCAGTTTTGTCGA+AGG - chr3_2:30316887-30316906 Msa0402330:intron 40.0%
TGAAGGCAACTTCCTGAAAT+GGG + chr3_2:30317084-30317103 None:intergenic 40.0%
TTGAAGGCAACTTCCTGAAA+TGG + chr3_2:30317085-30317104 None:intergenic 40.0%
AGGTTTGAATTTGGGCCCAA+TGG - chr3_2:30314335-30314354 Msa0402330:CDS 45.0%
GGTTTGAATTTGGGCCCAAT+GGG - chr3_2:30314336-30314355 Msa0402330:CDS 45.0%
TACAGTAGCACCATCACTAG+CGG - chr3_2:30314778-30314797 Msa0402330:intron 45.0%
ACCAACTGAGCTATGATCAC+GGG - chr3_2:30314971-30314990 Msa0402330:intron 45.0%
AGGTCTTCTTAGGCCACATT+TGG - chr3_2:30315187-30315206 Msa0402330:CDS 45.0%
GTACGAGTCATGTGTTTGTC+TGG - chr3_2:30315344-30315363 Msa0402330:intron 45.0%
AACGATGGGAAAAGACGCAA+AGG - chr3_2:30315801-30315820 Msa0402330:intron 45.0%
GCAAAGGCAAAGGAGTCAAA+GGG - chr3_2:30315817-30315836 Msa0402330:intron 45.0%
GCAAAGGAGTCAAAGGGTAA+GGG - chr3_2:30315823-30315842 Msa0402330:intron 45.0%
GAGAATGCTTCCAAGGGAAA+AGG - chr3_2:30315871-30315890 Msa0402330:intron 45.0%
GCTTCCAAGGGAAAAGGAAA+AGG - chr3_2:30315877-30315896 Msa0402330:intron 45.0%
TCCAAGGGAAAAGGAAAAGG+TGG - chr3_2:30315880-30315899 Msa0402330:intron 45.0%
CCAAGGGAAAAGGAAAAGGT+GGG - chr3_2:30315881-30315900 Msa0402330:intron 45.0%
ACCATCTTGCAGCTTCTTGT+AGG + chr3_2:30316328-30316347 None:intergenic 45.0%
ACAAGAAGCTGCAAGATGGT+TGG - chr3_2:30316328-30316347 Msa0402330:intron 45.0%
!! CAAGATGGTTGGCTTGACAA+TGG - chr3_2:30316339-30316358 Msa0402330:intron 45.0%
!! AGATGGTTGGCTTGACAATG+GGG - chr3_2:30316341-30316360 Msa0402330:intron 45.0%
! TTGGCTTGACAATGGGGATA+AGG - chr3_2:30316347-30316366 Msa0402330:intron 45.0%
AATCCATTTCTGAGCGGAAG+GGG + chr3_2:30316679-30316698 None:intergenic 45.0%
GAATCCATTTCTGAGCGGAA+GGG + chr3_2:30316680-30316699 None:intergenic 45.0%
TGAATCCATTTCTGAGCGGA+AGG + chr3_2:30316681-30316700 None:intergenic 45.0%
ACAGCTGAATTCAAGACTGC+TGG + chr3_2:30316719-30316738 None:intergenic 45.0%
GCAGTCTTGAATTCAGCTGT+AGG - chr3_2:30316719-30316738 Msa0402330:intron 45.0%
CTGCATACAATGCCCATTGA+CGG - chr3_2:30316818-30316837 Msa0402330:intron 45.0%
TGCATACAATGCCCATTGAC+GGG - chr3_2:30316819-30316838 Msa0402330:intron 45.0%
GGTCAGTAAATACCCGTCAA+TGG + chr3_2:30316834-30316853 None:intergenic 45.0%
GAGTATTCTGAATGCCCATC+AGG - chr3_2:30317010-30317029 Msa0402330:intron 45.0%
TGAATGCCCATCAGGAAAGA+AGG - chr3_2:30317018-30317037 Msa0402330:intron 45.0%
GAATGCCCATCAGGAAAGAA+GGG - chr3_2:30317019-30317038 Msa0402330:intron 45.0%
AACTCCAACAGGTGTGTTGA+AGG + chr3_2:30317101-30317120 None:intergenic 45.0%
!! CGTTGATTTGAAAGGAGCAC+TGG + chr3_2:30317125-30317144 None:intergenic 45.0%
TCGTGTAGCACAGACCCATT+GGG + chr3_2:30314353-30314372 None:intergenic 50.0%
TTCGTGTAGCACAGACCCAT+TGG + chr3_2:30314354-30314373 None:intergenic 50.0%
TGGGTCTGTGCTACACGAAA+TGG - chr3_2:30314355-30314374 Msa0402330:CDS 50.0%
ATGTGATTCCTCGTCTCGAC+TGG - chr3_2:30314379-30314398 Msa0402330:CDS 50.0%
TATTCACACCAGTCGAGACG+AGG + chr3_2:30314390-30314409 None:intergenic 50.0%
CCAACTGAGCTATGATCACG+GGG - chr3_2:30314972-30314991 Msa0402330:intron 50.0%
GGGAAAAGACGCAAAGGCAA+AGG - chr3_2:30315807-30315826 Msa0402330:intron 50.0%
CGCAAAGGCAAAGGAGTCAA+AGG - chr3_2:30315816-30315835 Msa0402330:intron 50.0%
GGCAAAGGAGTCAAAGGGTA+AGG - chr3_2:30315822-30315841 Msa0402330:intron 50.0%
GTCAAAGGGTAAGGGAAAGC+AGG - chr3_2:30315831-30315850 Msa0402330:intron 50.0%
! CCCACCTTTTCCTTTTCCCT+TGG + chr3_2:30315884-30315903 None:intergenic 50.0%
AAAGGTGGGAAAGCTGCTGA+TGG - chr3_2:30315895-30315914 Msa0402330:intron 50.0%
AAGGTGGGAAAGCTGCTGAT+GGG - chr3_2:30315896-30315915 Msa0402330:intron 50.0%
! ACCCTGAGGTGCTTGTGAAT+GGG + chr3_2:30315960-30315979 None:intergenic 50.0%
! AACCCTGAGGTGCTTGTGAA+TGG + chr3_2:30315961-30315980 None:intergenic 50.0%
GCCTACAAGAAGCTGCAAGA+TGG - chr3_2:30316324-30316343 Msa0402330:intron 50.0%
TCCTCCAGCAGAGTTTGCAA+AGG - chr3_2:30316371-30316390 Msa0402330:intron 50.0%
ACCTTTGCAAACTCTGCTGG+AGG + chr3_2:30316375-30316394 None:intergenic 50.0%
TATCCCCTTCCGCTCAGAAA+TGG - chr3_2:30316673-30316692 Msa0402330:intron 50.0%
GACGGGTATTTACTGACCAC+AGG - chr3_2:30316836-30316855 Msa0402330:intron 50.0%
!! TGTATTTTGGAGGGGGGATC+AGG + chr3_2:30316866-30316885 None:intergenic 50.0%
TAATATTTCGCCGACCTCGC+AGG - chr3_2:30316979-30316998 Msa0402330:intron 50.0%
ATACTCTTGAGCTACCTGCG+AGG + chr3_2:30316996-30317015 None:intergenic 50.0%
CTCCACCCTTCTTTCCTGAT+GGG + chr3_2:30317027-30317046 None:intergenic 50.0%
TCTCCACCCTTCTTTCCTGA+TGG + chr3_2:30317028-30317047 None:intergenic 50.0%
GAGACCTTGGATGGTTTCCA+CGG - chr3_2:30317044-30317063 Msa0402330:five_prime_UTR 50.0%
AGACCTTGGATGGTTTCCAC+GGG - chr3_2:30317045-30317064 Msa0402330:five_prime_UTR 50.0%
ATGGTTTCCACGGGGAAAGA+TGG - chr3_2:30317054-30317073 Msa0402330:five_prime_UTR 50.0%
! AAAGATGGCTGGCCCATTTC+AGG - chr3_2:30317069-30317088 Msa0402330:five_prime_UTR 50.0%
GTTGCCTTCAACACACCTGT+TGG - chr3_2:30317094-30317113 Msa0402330:five_prime_UTR 50.0%
ACCATCACTAGCGGCTGCTA+CGG - chr3_2:30314787-30314806 Msa0402330:intron 55.0%
! AGGTGAATGAGTGGGGTGTC+TGG - chr3_2:30314915-30314934 Msa0402330:intron 55.0%
CCCCGTGATCATAGCTCAGT+TGG + chr3_2:30314975-30314994 None:intergenic 55.0%
AAGGGAAAGCAGGCTGCAAG+TGG - chr3_2:30315841-30315860 Msa0402330:intron 55.0%
TCCCCATTCACAAGCACCTC+AGG - chr3_2:30315955-30315974 Msa0402330:intron 55.0%
! CCCTGAGGTGCTTGTGAATG+GGG + chr3_2:30315959-30315978 None:intergenic 55.0%
CCCCATTCACAAGCACCTCA+GGG - chr3_2:30315956-30315975 Msa0402330:intron 55.0%
TCTTGAGCTACCTGCGAGGT+CGG + chr3_2:30316992-30317011 None:intergenic 55.0%
TGCCCATCAGGAAAGAAGGG+TGG - chr3_2:30317022-30317041 Msa0402330:intron 55.0%
GGAAAGAAGGGTGGAGACCT+TGG - chr3_2:30317031-30317050 Msa0402330:intron 55.0%
AGAAGGGTGGAGACCTTGGA+TGG - chr3_2:30317035-30317054 Msa0402330:intron 55.0%
GACCTTGGATGGTTTCCACG+GGG - chr3_2:30317046-30317065 Msa0402330:five_prime_UTR 55.0%
TTCCCCGTGGAAACCATCCA+AGG + chr3_2:30317051-30317070 None:intergenic 55.0%
TTTCCACGGGGAAAGATGGC+TGG - chr3_2:30317058-30317077 Msa0402330:five_prime_UTR 55.0%
!! GGAGCACTGGTAACTCCAAC+AGG + chr3_2:30317112-30317131 None:intergenic 55.0%
ACCGTAGCAGCCGCTAGTGA+TGG + chr3_2:30314791-30314810 None:intergenic 60.0%
!! GGGAAAGCTGCTGATGGGCT+TGG - chr3_2:30315901-30315920 Msa0402330:intron 60.0%
GGGGGGATCAGGATTTCCTG+TGG + chr3_2:30316855-30316874 None:intergenic 60.0%
GGGCCAGCCATCTTTCCCCG+TGG + chr3_2:30317064-30317083 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 30314333 30317195 30314333 ID=Msa0402330;Name=Msa0402330
chr3_2 mRNA 30314333 30317195 30314333 ID=Msa0402330-mRNA-1;Parent=Msa0402330;Name=Msa0402330-mRNA-1;_AED=0.19;_eAED=0.19;_QI=170|1|0.75|1|0.66|0.5|4|0|147
chr3_2 exon 30314333 30314527 30314333 ID=Msa0402330-mRNA-1:exon:6102;Parent=Msa0402330-mRNA-1
chr3_2 exon 30315136 30315245 30315136 ID=Msa0402330-mRNA-1:exon:6101;Parent=Msa0402330-mRNA-1
chr3_2 exon 30315585 30315734 30315585 ID=Msa0402330-mRNA-1:exon:6100;Parent=Msa0402330-mRNA-1
chr3_2 exon 30317037 30317195 30317037 ID=Msa0402330-mRNA-1:exon:6099;Parent=Msa0402330-mRNA-1
chr3_2 five_prime_UTR 30317037 30317195 30317037 ID=Msa0402330-mRNA-1:five_prime_utr;Parent=Msa0402330-mRNA-1
chr3_2 five_prime_UTR 30315724 30315734 30315724 ID=Msa0402330-mRNA-1:five_prime_utr;Parent=Msa0402330-mRNA-1
chr3_2 CDS 30315585 30315723 30315585 ID=Msa0402330-mRNA-1:cds;Parent=Msa0402330-mRNA-1
chr3_2 CDS 30315136 30315245 30315136 ID=Msa0402330-mRNA-1:cds;Parent=Msa0402330-mRNA-1
chr3_2 CDS 30314333 30314527 30314333 ID=Msa0402330-mRNA-1:cds;Parent=Msa0402330-mRNA-1
Gene Sequence

>Msa0402330

ATGGGAAAAGACGCAAAGGCAAAGGAGTCAAAGGGTAAGGGAAAGCAGGCTGCAAGTGGAAGTGATGAGAATGCTTCCAAGGGAAAAGGAAAAGGTGGGAAAGCTGCTGATGGGCTTGGTACTTGCACTTATGTCAAAGCAAGACATATCTTATGTGAGAAACAAGGTAAGATTAATGAAGCCTACAAGAAGCTGCAAGATGGTTGGCTTGACAATGGGGATAAGGTTCCTCCAGCAGAGTTTGCAAAGGTAGCTCAAGAGTATTCTGAATGCCCATCAGGAAAGAAGGGTGGAGACCTTGGATGGTTTCCACGGGGAAAGATGGCTGGCCCATTTCAGGAAGTTGCCTTCAACACACCTGTTGGAGTTACCAGTGCTCCTTTCAAATCAACGTATTGCTCTCGCACCCTTCTAGTTGTTATTATATATGCATTATTGCTCTGA

Protein sequence

>Msa0402330

MGKDAKAKESKGKGKQAASGSDENASKGKGKGGKAADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLDNGDKVPPAEFAKVAQEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAPFKSTYCSRTLLVVIIYALLL*